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The title compound, C
9H
10N
2O
3S, is effectively planar, adopts an
E conformation about the central C—N bond and exists in the thione form. N—H
S and C—H
O hydrogen bonds link the molecules into ribbons. Layers of ribbons are connected to adjacent layers
via C—H
O interactions. The crystal is a non-merohedral twin, with the twin law describing a rotation of 180° around the [
00] direction.
Supporting information
CCDC reference: 621506
Key indicators
- Single-crystal X-ray study
- T = 150 K
- Mean (C-C) = 0.003 Å
- R factor = 0.052
- wR factor = 0.162
- Data-to-parameter ratio = 25.2
checkCIF/PLATON results
No syntax errors found
Alert level A
REFLT03_ALERT_3_A Reflection count > 15% excess reflns - sys abs data present?
From the CIF: _diffrn_reflns_theta_max 26.50
From the CIF: _diffrn_reflns_theta_full 26.50
From the CIF: _reflns_number_total 3481
TEST2: Reflns within _diffrn_reflns_theta_max
Count of symmetry unique reflns 2096
Completeness (_total/calc) 166.08%
| Author Response: The problem with the overestimated completeness is due to the
fact that the sample chosen for study was a twin.
The twin law is explained in the "_publ_section_exptl_refinement".
Since reflections from both twin components are used for refinement,
the completeness should ideally be at least 190%. But due to incomplete
overlap of some reflections (rejected) and to the fact that the data
collection strategy may not provide 99% complete data for both
components, we only get approximately 165% for this sample.
|
Further response to a query about the number of reflections used in the cell
refinement and the total number of reflections measured is also relevant and
is reproduced here.
TwinSolve integrated reflections out to a max theta of about 27.8deg.
So the numbers from the tsarchive.cif include reflections that apparently were
not used later, since the data collection section of the paper reports max
theta of 26.5deg. Therefore I've recalculated the numbers using 26.5 as the
cutoff. These numbers come from refining both components simultaneously so
that reflections from both components are used:
_cell_measurement_reflns_used 6050
_cell_measurement_theta_min 3.1
_cell_measurement_theta_max 26.5
The total number of reflections measured is 14293, not 3641 as shown in the
paper. The breakdown is this:
5912 non-overlapped component 1
5898 non-overlapped component 2
2483 1+2 overlapped
Once the equivalent reflections are averaged, keeping each group separate,
there are 3481 unique reflections, and the breakdown is: 1451 non-overlapped
component 1 1443 non-overlapped component 2 587 1+2 overlapped. The actual
hklf5 file contains 4068 reflections since the 587 overlaps are counted twice.
Regarding the value of "Rint": It is impossible to calculate just one value
for Rint. There is one for each set of reflections:
non-overlapped component 1, Rint = 0.035
non-overlapped component 2, Rint = 0.045
SHELX won't report an Rint for an HKLF 5 twin refinement because merging is
disabled (which is why the equivalent reflections within each component must
be merged in advance by TwinSolve)."
The 26.5 deg cut-off was applied so as to ensure data completeness.
PLAT707_ALERT_1_A D...A Calc 47.932(9), Rep 3.4435(19), Dev.. 4943.17 Sigma
N1 -S1 1.555 2.333
PLAT707_ALERT_1_A D...A Calc 28.262(6), Rep 3.481(3), Dev.. 4130.17 Sigma
C4 -O2 1.555 2.454
PLAT726_ALERT_1_A H...A Calc 47.66000, Rep 2.70000 Dev... 44.96 Ang.
H1# -S1 1.555 2.333
PLAT726_ALERT_1_A H...A Calc 27.42000, Rep 2.57000 Dev... 24.85 Ang.
H4 -O2 1.555 2.454
PLAT728_ALERT_1_A D-H..A Calc 108.00, Rep 142.00 Dev... 34.00 Deg.
N1 -H1# -S1 1.555 1.555 2.333
PLAT728_ALERT_1_A D-H..A Calc 152.00, Rep 162.00 Dev... 10.00 Deg.
C4 -H4 -O2 1.555 1.555 2.454
Alert level B
PLAT021_ALERT_1_B Ratio Unique / Expected Reflections too High ... 1.66
PLAT737_ALERT_1_B D...A Calc 47.932(9), Rep 3.4435(19) ...... 4.74 su-Ra
N1 -S1 1.555 2.333
Alert level C
PLAT029_ALERT_3_C _diffrn_measured_fraction_theta_full Low ....... 0.96
PLAT066_ALERT_1_C Predicted and Reported Transmissions Identical . ?
PLAT094_ALERT_2_C Ratio of Maximum / Minimum Residual Density .... 2.42
PLAT720_ALERT_4_C Number of Unusual/Non-Standard Label(s) ........ 1
7 ALERT level A = In general: serious problem
2 ALERT level B = Potentially serious problem
4 ALERT level C = Check and explain
0 ALERT level G = General alerts; check
9 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
1 ALERT type 2 Indicator that the structure model may be wrong or deficient
2 ALERT type 3 Indicator that the structure quality may be low
1 ALERT type 4 Improvement, methodology, query or suggestion
0 ALERT type 5 Informative message, check
checkCIF publication errors
Alert level A
PUBL024_ALERT_1_A The number of authors is greater than 5.
Please specify the role of each of the co-authors
for your paper.
| Author Response: Authors GAB, DJY and JLW were responsible for
the synthesis of the compound. The crystallography,
including the resolution of the twin, involved
the UTSA (GAB & ERTT) and Rigaku groups (REB and LMD).
|
1 ALERT level A = Data missing that is essential or data in wrong format
0 ALERT level G = General alerts. Data that may be required is missing
Data collection: CrystalClear (Rigaku/MSC, 2005); cell refinement: TwinSolve (Rigaku/MSC & Prekat, 2006); data reduction: TwinSolve; program(s) used to solve structure: SIR92 (Altomare et al., 1994); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEPII (Johnson, 1976) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: SHELXL97.
(
E)—
O-Ethyl
N-(4-nitrophenyl)thiocarbamate
top
Crystal data top
C9H10N2O3S | Z = 2 |
Mr = 226.25 | F(000) = 236 |
Triclinic, P1 | Dx = 1.485 Mg m−3 |
Hall symbol: -P 1 | Melting point = 451–452 K |
a = 6.9247 (12) Å | Mo Kα radiation, λ = 0.71070 Å |
b = 7.6430 (14) Å | Cell parameters from 6050 reflections |
c = 10.4772 (19) Å | θ = 3.1–26.5° |
α = 105.782 (8)° | µ = 0.31 mm−1 |
β = 90.136 (8)° | T = 150 K |
γ = 107.769 (7)° | Block, colorless |
V = 505.94 (16) Å3 | 0.22 × 0.13 × 0.13 mm |
Data collection top
Rigaku AFC12 κ/SATURN 724 diffractometer | 3481 independent reflections |
Radiation source: fine-focus sealed tube | 3295 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.035 |
ω scans | θmax = 26.5°, θmin = 3.1° |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | h = −8→8 |
Tmin = 0.935, Tmax = 0.961 | k = −9→9 |
14293 measured reflections | l = −13→13 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.052 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.162 | H-atom parameters constrained |
S = 1.10 | w = 1/[σ2(Fo2) + (0.0907P)2 + 0.4757P] where P = (Fo2 + 2Fc2)/3 |
3481 reflections | (Δ/σ)max = 0.001 |
138 parameters | Δρmax = 0.75 e Å−3 |
0 restraints | Δρmin = −0.31 e Å−3 |
Special details top
Experimental. Spectroscopic analysis: 1H NMR (CDCl3, δ, p.p.m.): 1.48 (3H, t, J =
7.0 Hz, CH3), 4.67 (2H, q, J = 7.0 Hz, CH2), 7.57 (2H, br,
aryl-H), 8.23 (2H, m, aryl-H), 8.42 (1H, br, NH); IR (crystals):
ν(N—H) 3284 (br), ν(N—O2) 1548 (s), ν(CN) 1494 (s),
ν(N—O2) 1376 (m), ν(CS) 1032 (s) cm-1. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
S1 | 0.92292 (7) | 1.05291 (7) | 1.20033 (5) | 0.02160 (19) | |
O3 | 0.5460 (2) | −0.1845 (2) | 0.77860 (15) | 0.0238 (4) | |
O2 | 0.5533 (3) | −0.0994 (2) | 0.59690 (15) | 0.0287 (4) | |
O1 | 0.8260 (2) | 0.7001 (2) | 1.22545 (14) | 0.0210 (3) | |
N2 | 0.5736 (3) | −0.0618 (2) | 0.71902 (17) | 0.0190 (4) | |
N1 | 0.8098 (3) | 0.7171 (2) | 1.01606 (17) | 0.0190 (4) | |
H1N1 | 0.8223 | 0.7910 | 0.9631 | 0.023* | |
C5 | 0.6366 (3) | 0.1400 (3) | 0.7975 (2) | 0.0177 (4) | |
C4 | 0.6548 (3) | 0.2803 (3) | 0.7333 (2) | 0.0192 (4) | |
H4 | 0.6288 | 0.2472 | 0.6393 | 0.023* | |
C3 | 0.7117 (3) | 0.4698 (3) | 0.8100 (2) | 0.0195 (4) | |
H3 | 0.7247 | 0.5679 | 0.7680 | 0.023* | |
C2 | 0.7506 (3) | 0.5191 (3) | 0.9491 (2) | 0.0173 (4) | |
C7 | 0.7321 (3) | 0.3748 (3) | 1.0111 (2) | 0.0200 (4) | |
H7 | 0.7589 | 0.4065 | 1.1050 | 0.024* | |
C6 | 0.6744 (3) | 0.1847 (3) | 0.9340 (2) | 0.0193 (4) | |
H6 | 0.6608 | 0.0855 | 0.9750 | 0.023* | |
C1 | 0.8507 (3) | 0.8134 (3) | 1.1473 (2) | 0.0183 (4) | |
C8 | 0.8656 (3) | 0.7841 (3) | 1.3696 (2) | 0.0242 (5) | |
H8A | 0.7767 | 0.8634 | 1.4025 | 0.029* | |
H8B | 1.0094 | 0.8661 | 1.3937 | 0.029* | |
C9 | 0.8209 (4) | 0.6200 (4) | 1.4291 (2) | 0.0332 (5) | |
H9A | 0.8488 | 0.6697 | 1.5261 | 0.040* | |
H9B | 0.9073 | 0.5408 | 1.3937 | 0.040* | |
H9C | 0.6773 | 0.5420 | 1.4062 | 0.040* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
S1 | 0.0238 (3) | 0.0154 (3) | 0.0224 (3) | 0.0047 (2) | 0.0013 (2) | 0.0020 (2) |
O3 | 0.0298 (8) | 0.0162 (7) | 0.0255 (8) | 0.0064 (6) | 0.0032 (6) | 0.0070 (6) |
O2 | 0.0425 (9) | 0.0220 (8) | 0.0183 (7) | 0.0092 (7) | 0.0003 (7) | 0.0017 (6) |
O1 | 0.0262 (7) | 0.0181 (7) | 0.0159 (7) | 0.0045 (6) | 0.0007 (6) | 0.0030 (5) |
N2 | 0.0191 (8) | 0.0172 (9) | 0.0200 (8) | 0.0060 (7) | 0.0014 (6) | 0.0042 (7) |
N1 | 0.0221 (8) | 0.0156 (8) | 0.0185 (8) | 0.0041 (7) | 0.0013 (7) | 0.0058 (7) |
C5 | 0.0160 (9) | 0.0153 (10) | 0.0206 (10) | 0.0051 (8) | 0.0017 (7) | 0.0031 (8) |
C4 | 0.0218 (9) | 0.0196 (10) | 0.0159 (9) | 0.0070 (8) | −0.0001 (7) | 0.0041 (8) |
C3 | 0.0210 (9) | 0.0186 (10) | 0.0206 (10) | 0.0068 (8) | 0.0016 (7) | 0.0080 (8) |
C2 | 0.0160 (8) | 0.0149 (10) | 0.0202 (10) | 0.0051 (7) | 0.0022 (7) | 0.0035 (8) |
C7 | 0.0225 (9) | 0.0194 (10) | 0.0171 (9) | 0.0054 (8) | 0.0008 (7) | 0.0050 (8) |
C6 | 0.0205 (9) | 0.0172 (10) | 0.0207 (10) | 0.0050 (8) | 0.0021 (7) | 0.0074 (8) |
C1 | 0.0149 (9) | 0.0183 (10) | 0.0210 (10) | 0.0059 (8) | 0.0017 (7) | 0.0036 (8) |
C8 | 0.0281 (10) | 0.0230 (11) | 0.0162 (10) | 0.0048 (9) | −0.0015 (8) | 0.0012 (8) |
C9 | 0.0472 (14) | 0.0303 (13) | 0.0206 (11) | 0.0112 (11) | −0.0002 (10) | 0.0063 (9) |
Geometric parameters (Å, º) top
S1—C1 | 1.672 (2) | C3—C2 | 1.406 (3) |
O3—N2 | 1.231 (2) | C3—H3 | 0.9500 |
O2—N2 | 1.230 (2) | C2—C7 | 1.400 (3) |
O1—C1 | 1.322 (3) | C7—C6 | 1.389 (3) |
O1—C8 | 1.460 (2) | C7—H7 | 0.9500 |
N2—C5 | 1.464 (2) | C6—H6 | 0.9500 |
N1—C1 | 1.354 (3) | C8—C9 | 1.499 (3) |
N1—C2 | 1.412 (3) | C8—H8A | 0.9900 |
N1—H1N1 | 0.8800 | C8—H8B | 0.9900 |
C5—C6 | 1.382 (3) | C9—H9A | 0.9800 |
C5—C4 | 1.389 (3) | C9—H9B | 0.9800 |
C4—C3 | 1.384 (3) | C9—H9C | 0.9800 |
C4—H4 | 0.9500 | | |
| | | |
C1—O1—C8 | 119.59 (16) | C6—C7—H7 | 120.3 |
O2—N2—O3 | 123.55 (17) | C2—C7—H7 | 120.3 |
O2—N2—C5 | 118.14 (17) | C5—C6—C7 | 119.92 (19) |
O3—N2—C5 | 118.30 (16) | C5—C6—H6 | 120.0 |
C1—N1—C2 | 131.38 (18) | C7—C6—H6 | 120.0 |
C1—N1—H1N1 | 114.3 | S1—C1—O1 | 124.93 (15) |
C2—N1—H1N1 | 114.3 | S1—C1—N1 | 121.58 (16) |
C6—C5—C4 | 121.97 (19) | O1—C1—N1 | 113.49 (17) |
C6—C5—N2 | 118.65 (18) | O1—C8—C9 | 106.55 (17) |
C4—C5—N2 | 119.37 (17) | O1—C8—H8A | 110.4 |
C3—C4—C5 | 118.20 (18) | C9—C8—H8A | 110.4 |
C3—C4—H4 | 120.9 | O1—C8—H8B | 110.4 |
C5—C4—H4 | 120.9 | C9—C8—H8B | 110.4 |
C4—C3—C2 | 120.98 (19) | H8A—C8—H8B | 108.6 |
C4—C3—H3 | 119.5 | C8—C9—H9A | 109.5 |
C2—C3—H3 | 119.5 | C8—C9—H9B | 109.5 |
C7—C2—C3 | 119.60 (19) | H9A—C9—H9B | 109.5 |
C7—C2—N1 | 124.77 (18) | C8—C9—H9C | 109.5 |
C3—C2—N1 | 115.63 (18) | H9A—C9—H9C | 109.5 |
C6—C7—C2 | 119.32 (19) | H9B—C9—H9C | 109.5 |
| | | |
O2—N2—C5—C6 | −175.30 (18) | C3—C2—C7—C6 | −0.4 (3) |
O3—N2—C5—C6 | 3.9 (3) | N1—C2—C7—C6 | −179.38 (18) |
C1—N1—C2—C3 | 177.19 (19) | C4—C5—C6—C7 | 0.1 (3) |
O2—N2—C5—C4 | 5.3 (3) | N2—C5—C6—C7 | −179.30 (18) |
O3—N2—C5—C4 | −175.49 (17) | C2—C7—C6—C5 | 0.3 (3) |
C6—C5—C4—C3 | −0.3 (3) | C8—O1—C1—N1 | 179.73 (17) |
N2—C5—C4—C3 | 179.10 (17) | C8—O1—C1—S1 | −0.9 (3) |
C5—C4—C3—C2 | 0.1 (3) | C2—N1—C1—O1 | −1.7 (3) |
C4—C3—C2—C7 | 0.2 (3) | C2—N1—C1—S1 | 178.88 (16) |
C4—C3—C2—N1 | 179.28 (17) | C1—O1—C8—C9 | 179.11 (18) |
C1—N1—C2—C7 | −3.8 (3) | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N1···S1i | 0.88 | 2.70 | 3.4435 (19) | 142 |
C4—H4···O2ii | 0.95 | 2.57 | 3.481 (3) | 162 |
C8—H8A···O2iii | 0.99 | 2.57 | 3.345 (3) | 135 |
C3—H3···O3iv | 0.95 | 2.54 | 3.275 (3) | 135 |
Symmetry codes: (i) −x−2, −y−2, −z−2; (ii) −x−1, −y, −z−1; (iii) x, y+1, z+1; (iv) x, y+1, z. |
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