Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S160053680701817X/sj2291sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S160053680701817X/sj2291Isup2.hkl |
CCDC reference: 647596
Key indicators
- Single-crystal X-ray study
- T = 100 K
- Mean (C-C)= 0.003 Å
- R factor = 0.068
- wR factor = 0.152
- Data-to-parameter ratio = 19.3
checkCIF/PLATON results
No syntax errors found No errors found in this datablock
For related literature on hydrogen-bond motifs, see Bernstein et al. (1995) and on values of bond lengths and angles, see Allen et al. (1987). For related structures, see Shan et al. (2003); Shan et al. (2004); Tameem et al., 2006; Tameem et al., 2007. For related literature, see: Raj & Kurup (2006); Suliman & Soma (2002); Vogel et al. (2000).
The title compound (I) was prepared by the slow addition of phenylhydrazine (350 mg, 3.2 mmol) dissolved in 5 ml concentrated sulfuric acid to a 2-hydroxy-5-nitrobenzaldehyde (540 mg, 3.2 mmol) dissloved in 20 ml of 95% ethanol. The mixture was stirred for 15 min, and then left to stand at room temperature form 30 min. The resulting product was filtered off and washed with 20 ml 95% ethanol and an orange powder product was collected. Crystals suitable for X-ray diffraction analysis were grown by the slow evaporation of a saturated solution of the resultant product in ethanol.
The H atoms on the N and O atoms were located in a difference map and refined isotropically, with N—H = 0.85 (2)Å and O—H = 0.85 (3) Å. The remaining H atoms were positioned geometrically and treated as riding, with C—H = 0.93Å and the Uiso(H) = 1.2Ueq(C).
Several phenylhydrazone derivatives have been reported and were found to have versatile coordinating abilities towards different metal ions (Raj et al., 2006). Some of these compounds were used as monitors or detectors for formaldehyde (Suliman et al., 2001) and are also used to determine airbone aldehydes and ketones (Vogel et al., 2000). Phenylhydrazone and nitrophenylhydrazone derivatives have also been synthesized in our laboratory in order to investigate their structures and analytical application. The title compound (I) whose structure is reported here, (Fig. 1) is one of the series of related phenylhdrazone derivatives that we have prepared; the X-ray structures of two of this series have been studied previously (Tameem et al., 2006; Tameem et al., 2007).
The bond lengths and angles in (I) have normal values (Allen et al., 1987) and are comparable with those in the related structures (Shan et al., 2003; Shan et al., 2004). The molecule is essentially planar with the dihedral angle between the two benzene rings (C1—C6 and C8—C13) being 5.31 (10)°. The nitro group in the title compound, benzaldehyde 2-nitro-5-hydroxyphenylhydrazone, is attached at C10, meta to the phenylhydrazone substituent in the phenol ring [torsion angle of O2—N3—C10—C11 = -2.7 (3)°]. However, the corresponding nitro group in salicylaldehyde 4-nitrophenylhydrazone (Shan et al., 2003) is attached at C4 in para-position to the hydrazone group [torsion angle of O1—N1—C4—C5 = -6.2 (5)°].
An intramolecular O1—H1B···N2 interaction (Table 1 and Figure 1) generates an S(6) ring motif (Bernstein et al., 1995). In the crystal structure, the molecules are linked by intermolecular N1—H1C···O3i and C9—H9A···O1ii interactions into a three-dimensional framework (Figure 2). In addition, the crystal packing is stabilized by weak intermolecular π···π interactions involving the C8—C13 (Centroid Cg1) benzene ring with a Cg1···Cg1iii distance of 3.7279 (11)Å [symmetry code: (iii) 1 - x, 2 - y, -z].
For related literature on hydrogen-bond motifs, see Bernstein et al. (1995) and on values of bond lengths and angles, see Allen et al. (1987). For related structures, see Shan et al. (2003); Shan et al. (2004); Tameem et al., 2006; Tameem et al., 2007. For related literature, see: Raj & Kurup (2006); Suliman & Soma (2002); Vogel et al. (2000).
Data collection: APEX2 (Bruker, 2005); cell refinement: APEX2; data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXTL (Sheldrick, 1998); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL, PARST (Nardelli, 1995) and PLATON (Spek, 2003).
C13H11N3O3 | F(000) = 536 |
Mr = 257.25 | Dx = 1.441 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 2685 reflections |
a = 12.9019 (5) Å | θ = 1.7–30.2° |
b = 7.9909 (3) Å | µ = 0.11 mm−1 |
c = 12.5323 (5) Å | T = 100 K |
β = 113.418 (2)° | Plate, orange |
V = 1185.63 (8) Å3 | 0.35 × 0.29 × 0.03 mm |
Z = 4 |
Bruker SMART APEX2 CCD area-detector diffractometer | 3480 independent reflections |
Radiation source: fine-focus sealed tube | 2265 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.050 |
Detector resolution: 8.33 pixels mm-1 | θmax = 30.2°, θmin = 1.7° |
ω scans | h = −18→16 |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | k = −9→11 |
Tmin = 0.939, Tmax = 0.997 | l = −16→17 |
12742 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.068 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.152 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0569P)2 + 0.5968P] where P = (Fo2 + 2Fc2)/3 |
3480 reflections | (Δ/σ)max < 0.001 |
180 parameters | Δρmax = 0.42 e Å−3 |
0 restraints | Δρmin = −0.24 e Å−3 |
C13H11N3O3 | V = 1185.63 (8) Å3 |
Mr = 257.25 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 12.9019 (5) Å | µ = 0.11 mm−1 |
b = 7.9909 (3) Å | T = 100 K |
c = 12.5323 (5) Å | 0.35 × 0.29 × 0.03 mm |
β = 113.418 (2)° |
Bruker SMART APEX2 CCD area-detector diffractometer | 3480 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | 2265 reflections with I > 2σ(I) |
Tmin = 0.939, Tmax = 0.997 | Rint = 0.050 |
12742 measured reflections |
R[F2 > 2σ(F2)] = 0.068 | 0 restraints |
wR(F2) = 0.152 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | Δρmax = 0.42 e Å−3 |
3480 reflections | Δρmin = −0.24 e Å−3 |
180 parameters |
Experimental. The data was collected with the Oxford Cyrosystem Cobra low-temperature attachment. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.48565 (12) | 0.68203 (19) | 0.15079 (12) | 0.0262 (4) | |
O2 | 0.84393 (11) | 1.10514 (19) | 0.05297 (12) | 0.0308 (4) | |
O3 | 0.73542 (12) | 1.0344 (2) | −0.12240 (12) | 0.0387 (4) | |
N1 | 0.25322 (13) | 0.5634 (2) | −0.14691 (14) | 0.0231 (4) | |
N2 | 0.34887 (12) | 0.6265 (2) | −0.06494 (13) | 0.0200 (4) | |
N3 | 0.76112 (13) | 1.0327 (2) | −0.01671 (14) | 0.0236 (4) | |
C1 | 0.18662 (16) | 0.4549 (3) | −0.00323 (16) | 0.0236 (4) | |
H1A | 0.2441 | 0.5097 | 0.0569 | 0.028* | |
C2 | 0.10905 (17) | 0.3587 (3) | 0.02002 (18) | 0.0289 (5) | |
H2A | 0.1152 | 0.3485 | 0.0962 | 0.035* | |
C3 | 0.02226 (17) | 0.2773 (3) | −0.06842 (19) | 0.0302 (5) | |
H3A | −0.0287 | 0.2112 | −0.0517 | 0.036* | |
C4 | 0.01232 (17) | 0.2953 (3) | −0.18153 (18) | 0.0283 (5) | |
H4A | −0.0467 | 0.2428 | −0.2415 | 0.034* | |
C5 | 0.08898 (16) | 0.3903 (2) | −0.20658 (17) | 0.0235 (4) | |
H5A | 0.0814 | 0.4019 | −0.2832 | 0.028* | |
C6 | 0.17827 (15) | 0.4695 (2) | −0.11688 (16) | 0.0205 (4) | |
C7 | 0.41932 (15) | 0.7005 (2) | −0.09859 (15) | 0.0200 (4) | |
H7A | 0.4046 | 0.7061 | −0.1774 | 0.024* | |
C8 | 0.52188 (15) | 0.7755 (2) | −0.01390 (15) | 0.0184 (4) | |
C9 | 0.59248 (15) | 0.8645 (2) | −0.05285 (16) | 0.0197 (4) | |
H9A | 0.5749 | 0.8741 | −0.1321 | 0.024* | |
C10 | 0.68939 (15) | 0.9392 (2) | 0.02689 (16) | 0.0194 (4) | |
C11 | 0.71885 (15) | 0.9287 (2) | 0.14548 (16) | 0.0218 (4) | |
H11A | 0.7842 | 0.9799 | 0.1974 | 0.026* | |
C12 | 0.64949 (15) | 0.8409 (3) | 0.18517 (16) | 0.0227 (4) | |
H12A | 0.6684 | 0.8320 | 0.2647 | 0.027* | |
C13 | 0.55093 (15) | 0.7649 (2) | 0.10712 (15) | 0.0199 (4) | |
H1C | 0.2504 (16) | 0.564 (3) | −0.2155 (19) | 0.017 (5)* | |
H1B | 0.431 (2) | 0.649 (3) | 0.090 (2) | 0.051 (8)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0238 (7) | 0.0336 (9) | 0.0177 (7) | −0.0076 (6) | 0.0046 (6) | 0.0003 (6) |
O2 | 0.0240 (7) | 0.0339 (9) | 0.0311 (8) | −0.0097 (6) | 0.0073 (6) | −0.0029 (7) |
O3 | 0.0321 (8) | 0.0616 (12) | 0.0211 (7) | −0.0113 (8) | 0.0091 (6) | 0.0048 (7) |
N1 | 0.0214 (8) | 0.0300 (10) | 0.0143 (8) | −0.0056 (7) | 0.0033 (6) | −0.0018 (7) |
N2 | 0.0170 (7) | 0.0214 (9) | 0.0170 (7) | 0.0004 (6) | 0.0019 (6) | −0.0022 (6) |
N3 | 0.0196 (8) | 0.0263 (9) | 0.0234 (8) | 0.0011 (7) | 0.0071 (7) | 0.0024 (7) |
C1 | 0.0181 (9) | 0.0245 (11) | 0.0221 (9) | −0.0020 (8) | 0.0016 (7) | −0.0010 (8) |
C2 | 0.0258 (10) | 0.0342 (13) | 0.0253 (10) | 0.0001 (9) | 0.0088 (8) | 0.0036 (9) |
C3 | 0.0234 (10) | 0.0261 (11) | 0.0386 (12) | −0.0028 (9) | 0.0096 (9) | 0.0031 (9) |
C4 | 0.0208 (10) | 0.0227 (11) | 0.0329 (11) | −0.0031 (8) | 0.0017 (8) | −0.0033 (9) |
C5 | 0.0223 (9) | 0.0219 (10) | 0.0200 (9) | 0.0002 (8) | 0.0018 (7) | −0.0007 (8) |
C6 | 0.0183 (9) | 0.0180 (9) | 0.0217 (9) | 0.0011 (7) | 0.0042 (7) | −0.0002 (8) |
C7 | 0.0188 (9) | 0.0231 (10) | 0.0147 (8) | 0.0021 (8) | 0.0030 (7) | −0.0004 (7) |
C8 | 0.0176 (8) | 0.0182 (9) | 0.0163 (8) | 0.0033 (7) | 0.0034 (7) | 0.0002 (7) |
C9 | 0.0201 (9) | 0.0211 (10) | 0.0168 (8) | 0.0030 (8) | 0.0063 (7) | −0.0004 (7) |
C10 | 0.0161 (8) | 0.0199 (10) | 0.0220 (9) | 0.0022 (7) | 0.0072 (7) | 0.0013 (8) |
C11 | 0.0170 (9) | 0.0220 (10) | 0.0211 (9) | 0.0007 (8) | 0.0020 (7) | 0.0000 (8) |
C12 | 0.0219 (9) | 0.0283 (11) | 0.0135 (8) | −0.0001 (8) | 0.0025 (7) | 0.0004 (8) |
C13 | 0.0194 (9) | 0.0206 (10) | 0.0183 (9) | 0.0021 (8) | 0.0062 (7) | 0.0017 (7) |
O1—C13 | 1.347 (2) | C4—C5 | 1.379 (3) |
O1—H1B | 0.85 (3) | C4—H4A | 0.9300 |
O2—N3 | 1.224 (2) | C5—C6 | 1.401 (3) |
O3—N3 | 1.231 (2) | C5—H5A | 0.9300 |
N1—N2 | 1.351 (2) | C7—C8 | 1.456 (2) |
N1—C6 | 1.389 (3) | C7—H7A | 0.9300 |
N1—H1C | 0.85 (2) | C8—C9 | 1.389 (3) |
N2—C7 | 1.288 (2) | C8—C13 | 1.413 (2) |
N3—C10 | 1.454 (2) | C9—C10 | 1.387 (2) |
C1—C2 | 1.382 (3) | C9—H9A | 0.9300 |
C1—C6 | 1.390 (3) | C10—C11 | 1.383 (3) |
C1—H1A | 0.9300 | C11—C12 | 1.376 (3) |
C2—C3 | 1.385 (3) | C11—H11A | 0.9300 |
C2—H2A | 0.9300 | C12—C13 | 1.398 (2) |
C3—C4 | 1.379 (3) | C12—H12A | 0.9300 |
C3—H3A | 0.9300 | ||
C13—O1—H1B | 103.0 (19) | N1—C6—C5 | 117.75 (17) |
N2—N1—C6 | 121.31 (16) | C1—C6—C5 | 119.26 (18) |
N2—N1—H1C | 115.4 (14) | N2—C7—C8 | 120.37 (17) |
C6—N1—H1C | 121.6 (14) | N2—C7—H7A | 119.8 |
C7—N2—N1 | 118.22 (16) | C8—C7—H7A | 119.8 |
O2—N3—O3 | 123.23 (17) | C9—C8—C13 | 118.48 (16) |
O2—N3—C10 | 118.71 (16) | C9—C8—C7 | 119.19 (16) |
O3—N3—C10 | 118.06 (15) | C13—C8—C7 | 122.30 (17) |
C2—C1—C6 | 119.67 (18) | C10—C9—C8 | 119.77 (17) |
C2—C1—H1A | 120.2 | C10—C9—H9A | 120.1 |
C6—C1—H1A | 120.2 | C8—C9—H9A | 120.1 |
C1—C2—C3 | 121.0 (2) | C11—C10—C9 | 122.15 (18) |
C1—C2—H2A | 119.5 | C11—C10—N3 | 119.41 (16) |
C3—C2—H2A | 119.5 | C9—C10—N3 | 118.44 (17) |
C4—C3—C2 | 119.3 (2) | C12—C11—C10 | 118.63 (17) |
C4—C3—H3A | 120.4 | C12—C11—H11A | 120.7 |
C2—C3—H3A | 120.4 | C10—C11—H11A | 120.7 |
C5—C4—C3 | 120.63 (19) | C11—C12—C13 | 120.66 (17) |
C5—C4—H4A | 119.7 | C11—C12—H12A | 119.7 |
C3—C4—H4A | 119.7 | C13—C12—H12A | 119.7 |
C4—C5—C6 | 120.11 (19) | O1—C13—C12 | 118.11 (16) |
C4—C5—H5A | 119.9 | O1—C13—C8 | 121.58 (16) |
C6—C5—H5A | 119.9 | C12—C13—C8 | 120.31 (18) |
N1—C6—C1 | 122.96 (16) | ||
C6—N1—N2—C7 | 174.30 (18) | C8—C9—C10—C11 | −0.2 (3) |
C6—C1—C2—C3 | −0.5 (3) | C8—C9—C10—N3 | −179.55 (17) |
C1—C2—C3—C4 | −1.1 (3) | O2—N3—C10—C11 | −2.7 (3) |
C2—C3—C4—C5 | 1.3 (3) | O3—N3—C10—C11 | 177.10 (18) |
C3—C4—C5—C6 | 0.2 (3) | O2—N3—C10—C9 | 176.73 (17) |
N2—N1—C6—C1 | 10.0 (3) | O3—N3—C10—C9 | −3.5 (3) |
N2—N1—C6—C5 | −171.80 (18) | C9—C10—C11—C12 | 0.1 (3) |
C2—C1—C6—N1 | −179.80 (19) | N3—C10—C11—C12 | 179.47 (17) |
C2—C1—C6—C5 | 2.0 (3) | C10—C11—C12—C13 | −0.4 (3) |
C4—C5—C6—N1 | 179.86 (18) | C11—C12—C13—O1 | −179.33 (18) |
C4—C5—C6—C1 | −1.8 (3) | C11—C12—C13—C8 | 0.8 (3) |
N1—N2—C7—C8 | 177.97 (17) | C9—C8—C13—O1 | 179.28 (17) |
N2—C7—C8—C9 | −175.53 (18) | C7—C8—C13—O1 | 1.1 (3) |
N2—C7—C8—C13 | 2.7 (3) | C9—C8—C13—C12 | −0.9 (3) |
C13—C8—C9—C10 | 0.5 (3) | C7—C8—C13—C12 | −179.07 (18) |
C7—C8—C9—C10 | 178.80 (18) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1B···N2 | 0.85 (2) | 1.81 (2) | 2.613 (2) | 156 (2) |
N1—H1C···O3i | 0.85 (2) | 2.12 (2) | 2.961 (2) | 170 (2) |
C9—H9A···O1ii | 0.93 | 2.54 | 3.430 (2) | 161 |
Symmetry codes: (i) −x+1, y−1/2, −z−1/2; (ii) x, −y+3/2, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | C13H11N3O3 |
Mr | 257.25 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 100 |
a, b, c (Å) | 12.9019 (5), 7.9909 (3), 12.5323 (5) |
β (°) | 113.418 (2) |
V (Å3) | 1185.63 (8) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.11 |
Crystal size (mm) | 0.35 × 0.29 × 0.03 |
Data collection | |
Diffractometer | Bruker SMART APEX2 CCD area-detector |
Absorption correction | Multi-scan (SADABS; Bruker, 2005) |
Tmin, Tmax | 0.939, 0.997 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 12742, 3480, 2265 |
Rint | 0.050 |
(sin θ/λ)max (Å−1) | 0.708 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.068, 0.152, 1.04 |
No. of reflections | 3480 |
No. of parameters | 180 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.42, −0.24 |
Computer programs: APEX2 (Bruker, 2005), APEX2, SAINT (Bruker, 2005), SHELXTL (Sheldrick, 1998), SHELXTL, PARST (Nardelli, 1995) and PLATON (Spek, 2003).
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1B···N2 | 0.85 (2) | 1.81 (2) | 2.613 (2) | 156 (2) |
N1—H1C···O3i | 0.85 (2) | 2.12 (2) | 2.961 (2) | 170 (2) |
C9—H9A···O1ii | 0.93 | 2.54 | 3.430 (2) | 161 |
Symmetry codes: (i) −x+1, y−1/2, −z−1/2; (ii) x, −y+3/2, z−1/2. |
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Several phenylhydrazone derivatives have been reported and were found to have versatile coordinating abilities towards different metal ions (Raj et al., 2006). Some of these compounds were used as monitors or detectors for formaldehyde (Suliman et al., 2001) and are also used to determine airbone aldehydes and ketones (Vogel et al., 2000). Phenylhydrazone and nitrophenylhydrazone derivatives have also been synthesized in our laboratory in order to investigate their structures and analytical application. The title compound (I) whose structure is reported here, (Fig. 1) is one of the series of related phenylhdrazone derivatives that we have prepared; the X-ray structures of two of this series have been studied previously (Tameem et al., 2006; Tameem et al., 2007).
The bond lengths and angles in (I) have normal values (Allen et al., 1987) and are comparable with those in the related structures (Shan et al., 2003; Shan et al., 2004). The molecule is essentially planar with the dihedral angle between the two benzene rings (C1—C6 and C8—C13) being 5.31 (10)°. The nitro group in the title compound, benzaldehyde 2-nitro-5-hydroxyphenylhydrazone, is attached at C10, meta to the phenylhydrazone substituent in the phenol ring [torsion angle of O2—N3—C10—C11 = -2.7 (3)°]. However, the corresponding nitro group in salicylaldehyde 4-nitrophenylhydrazone (Shan et al., 2003) is attached at C4 in para-position to the hydrazone group [torsion angle of O1—N1—C4—C5 = -6.2 (5)°].
An intramolecular O1—H1B···N2 interaction (Table 1 and Figure 1) generates an S(6) ring motif (Bernstein et al., 1995). In the crystal structure, the molecules are linked by intermolecular N1—H1C···O3i and C9—H9A···O1ii interactions into a three-dimensional framework (Figure 2). In addition, the crystal packing is stabilized by weak intermolecular π···π interactions involving the C8—C13 (Centroid Cg1) benzene ring with a Cg1···Cg1iii distance of 3.7279 (11)Å [symmetry code: (iii) 1 - x, 2 - y, -z].