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metal-organic compounds
Each Cu atom in the centrosymmetric dinuclear title compound, [Cu2(C3H5O5P)2(C12H8N2)2(H2O)2], is chelated by an N-heterocycle and is also coordinated by a molecule of water. The two Cu atoms are bridged by the 3-phosphonopropionate(2−) unit, giving rise to a square-pyramidal geometry for the metal centre. The molecules are linked by hydrogen bonds into a layer structure.
Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536803026370/wk6004sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536803026370/wk6004Isup2.hkl |
CCDC reference: 227756
Key indicators
- Single-crystal X-ray study
- T = 298 K
- Mean (C-C) = 0.006 Å
- R factor = 0.048
- wR factor = 0.133
- Data-to-parameter ratio = 14.2
checkCIF/PLATON results
No syntax errors found
Alert level A PLAT029_ALERT_3_A _diffrn_measured_fraction_theta_full Low ....... 0.95
Alert level C ABSTM02_ALERT_3_C The ratio of expected to reported Tmax/Tmin(RR') is < 0.90 Tmin and Tmax reported: 0.539 0.735 Tmin' and Tmax expected: 0.652 0.721 RR' = 0.810 Please check that your absorption correction is appropriate. PLAT061_ALERT_3_C Tmax/Tmin Range Test RR' too Large ............. 0.79 PLAT062_ALERT_4_C Rescale T(min) & T(max) by ..................... 0.98 PLAT125_ALERT_4_C No _symmetry_space_group_name_Hall Given ....... ? PLAT720_ALERT_4_C Number of Unusual/Non-Standard Label(s) ........ 2 PLAT731_ALERT_1_C Bond Calc 0.85(3), Rep 0.840(10) ...... 3.00 su-Rat O1W -H1W1 1.555 1.555 PLAT731_ALERT_1_C Bond Calc 0.83(3), Rep 0.830(10) ...... 3.00 su-Rat O1W -H1W2 1.555 1.555 PLAT731_ALERT_1_C Bond Calc 0.85(4), Rep 0.840(10) ...... 4.00 su-Rat O3 -H3O 1.555 1.555 PLAT735_ALERT_1_C D-H Calc 0.85(3), Rep 0.840(10) ...... 3.00 su-Rat O1W -H1# 1.555 1.555 PLAT735_ALERT_1_C D-H Calc 0.83(3), Rep 0.830(10) ...... 3.00 su-Rat O1W -H2# 1.555 1.555 PLAT735_ALERT_1_C D-H Calc 0.85(4), Rep 0.840(10) ...... 4.00 su-Rat O3 -H3O 1.555 1.555 PLAT736_ALERT_1_C H...A Calc 1.90(4), Rep 1.910(10) ...... 4.00 su-Rat H1# -O2 1.555 1.555 PLAT736_ALERT_1_C H...A Calc 1.75(5), Rep 1.76(2) ...... 2.50 su-Rat H3O -O2 1.555 2.666
1 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 13 ALERT level C = Check and explain 0 ALERT level G = General alerts; check 8 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 0 ALERT type 2 Indicator that the structure model may be wrong or deficient 3 ALERT type 3 Indicator that the structure quality may be low 3 ALERT type 4 Improvement, methodology, query or suggestion
Computing details top
Data collection: SMART (Bruker, 2001); cell refinement: SMART; data reduction: SAINT (Bruker, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEPII (Johnson, 1976); software used to prepare material for publication: SHELXL97.
Bis[µ-3-phosphonopropionato(2-)]bis[aqua(1,10-phenanthroline)copper(II)] top
Crystal data top
[Cu2(C3H5O5P)2(C12H8N2)2(H2O)2] | Z = 1 |
Mr = 827.60 | F(000) = 422 |
Triclinic, P1 | Dx = 1.706 Mg m−3 |
a = 7.948 (1) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 10.384 (2) Å | Cell parameters from 1568 reflections |
c = 11.625 (2) Å | θ = 2.8–25.7° |
α = 111.707 (2)° | µ = 1.49 mm−1 |
β = 96.514 (2)° | T = 298 K |
γ = 109.965 (2)° | Block, blue |
V = 805.6 (2) Å3 | 0.28 × 0.24 × 0.22 mm |
Data collection top
Bruker APEX area-detector diffractometer | 3338 independent reflections |
Radiation source: fine-focus sealed tube | 2651 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.027 |
φ and ω scans | θmax = 27.0°, θmin = 2.0° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −10→9 |
Tmin = 0.539, Tmax = 0.735 | k = −13→11 |
4524 measured reflections | l = −13→14 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.048 | Hydrogen site location: geom and difmap |
wR(F2) = 0.133 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | w = 1/[σ2(Fo2) + (0.0715P)2] where P = (Fo2 + 2Fc2)/3 |
3338 reflections | (Δ/σ)max = 0.001 |
235 parameters | Δρmax = 0.74 e Å−3 |
4 restraints | Δρmin = −0.43 e Å−3 |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
x | y | z | Uiso*/Ueq | ||
Cu1 | 0.51748 (6) | 0.81219 (5) | 0.25798 (4) | 0.02660 (17) | |
P1 | 0.5995 (1) | 0.6427 (1) | 0.4190 (1) | 0.0263 (2) | |
O1 | 0.6025 (3) | 0.6794 (3) | 0.3049 (2) | 0.032 (1) | |
O2 | 0.4198 (3) | 0.6188 (3) | 0.4588 (3) | 0.035 (1) | |
O3 | 0.6397 (4) | 0.4972 (3) | 0.3813 (3) | 0.036 (1) | |
O1W | 0.3021 (4) | 0.7936 (3) | 0.3727 (2) | 0.034 (1) | |
O4 | 1.2899 (3) | 1.0020 (3) | 0.6031 (2) | 0.032 (1) | |
O5 | 1.1202 (4) | 1.0273 (3) | 0.7411 (2) | 0.040 (1) | |
N1 | 0.3486 (4) | 0.6337 (3) | 0.0898 (3) | 0.028 (1) | |
N2 | 0.4262 (4) | 0.9266 (3) | 0.1759 (3) | 0.030 (1) | |
C1 | 0.7887 (5) | 0.7916 (4) | 0.5552 (3) | 0.030 (1) | |
C2 | 0.9767 (5) | 0.8229 (4) | 0.5267 (4) | 0.033 (1) | |
C3 | 1.1375 (5) | 0.9609 (4) | 0.6334 (3) | 0.029 (1) | |
C4 | 0.3132 (5) | 0.4865 (4) | 0.0500 (4) | 0.034 (1) | |
C5 | 0.1935 (5) | 0.3763 (4) | −0.0689 (4) | 0.038 (1) | |
C6 | 0.1058 (5) | 0.4157 (4) | −0.1486 (4) | 0.039 (1) | |
C7 | 0.1375 (5) | 0.5694 (4) | −0.1100 (3) | 0.035 (1) | |
C8 | 0.2622 (5) | 0.6742 (4) | 0.0120 (3) | 0.028 (1) | |
C9 | 0.0510 (6) | 0.6251 (5) | −0.1840 (4) | 0.047 (1) | |
C10 | 0.0878 (6) | 0.7739 (5) | −0.1399 (4) | 0.047 (1) | |
C11 | 0.2173 (5) | 0.8847 (5) | −0.0165 (4) | 0.037 (1) | |
C12 | 0.3021 (5) | 0.8334 (4) | 0.0586 (3) | 0.031 (1) | |
C13 | 0.2683 (6) | 1.0421 (5) | 0.0338 (4) | 0.045 (1) | |
C14 | 0.3913 (6) | 1.1359 (5) | 0.1519 (4) | 0.045 (1) | |
C15 | 0.4694 (6) | 1.0757 (4) | 0.2216 (4) | 0.038 (1) | |
H1W1 | 0.321 (5) | 0.729 (3) | 0.394 (3) | 0.041* | |
H1W2 | 0.360 (5) | 0.883 (2) | 0.429 (3) | 0.041* | |
H3O | 0.641 (6) | 0.476 (5) | 0.445 (3) | 0.043* | |
H1A | 0.7687 | 0.8842 | 0.5821 | 0.036* | |
H1B | 0.7898 | 0.7635 | 0.6260 | 0.036* | |
H2A | 1.0028 | 0.7340 | 0.5102 | 0.039* | |
H2B | 0.9694 | 0.8373 | 0.4487 | 0.039* | |
H4 | 0.3708 | 0.4572 | 0.1038 | 0.041* | |
H5 | 0.1731 | 0.2749 | −0.0943 | 0.045* | |
H6 | 0.0251 | 0.3415 | −0.2284 | 0.047* | |
H9 | −0.0325 | 0.5568 | −0.2644 | 0.056* | |
H10 | 0.0284 | 0.8061 | −0.1902 | 0.056* | |
H13 | 0.2181 | 1.0821 | −0.0134 | 0.054* | |
H14 | 0.4237 | 1.2402 | 0.1864 | 0.054* | |
H15 | 0.5539 | 1.1414 | 0.3021 | 0.046* |
Atomic displacement parameters (Å2) top
U11 | U22 | U33 | U12 | U13 | U23 | |
Cu1 | 0.0262 (3) | 0.0220 (3) | 0.0210 (2) | 0.0037 (2) | −0.0006 (2) | 0.0064 (2) |
P1 | 0.0240 (5) | 0.0244 (5) | 0.0255 (5) | 0.0054 (4) | 0.0036 (4) | 0.0110 (4) |
O1 | 0.033 (1) | 0.032 (1) | 0.030 (1) | 0.012 (1) | 0.005 (1) | 0.014 (1) |
O2 | 0.025 (1) | 0.041 (2) | 0.047 (2) | 0.011 (1) | 0.012 (1) | 0.027 (1) |
O3 | 0.041 (2) | 0.028 (1) | 0.039 (2) | 0.013 (1) | 0.012 (1) | 0.017 (1) |
O4 | 0.024 (1) | 0.028 (1) | 0.028 (1) | 0.003 (1) | 0.000 (1) | 0.006 (1) |
O5 | 0.047 (2) | 0.031 (2) | 0.026 (1) | 0.007 (1) | 0.005 (1) | 0.006 (1) |
O1W | 0.031 (1) | 0.035 (2) | 0.032 (1) | 0.012 (1) | 0.008 (1) | 0.012 (1) |
N1 | 0.026 (2) | 0.025 (2) | 0.025 (2) | 0.006 (1) | −0.001 (1) | 0.007 (1) |
N2 | 0.032 (2) | 0.024 (2) | 0.025 (2) | 0.008 (1) | −0.001 (1) | 0.007 (1) |
C1 | 0.027 (2) | 0.033 (2) | 0.022 (2) | 0.007 (2) | 0.006 (2) | 0.008 (2) |
C2 | 0.028 (2) | 0.027 (2) | 0.027 (2) | 0.003 (2) | 0.002 (2) | 0.005 (2) |
C3 | 0.031 (2) | 0.022 (2) | 0.027 (2) | 0.008 (2) | −0.001 (2) | 0.011 (2) |
C4 | 0.037 (2) | 0.025 (2) | 0.032 (2) | 0.010 (2) | 0.005 (2) | 0.008 (2) |
C5 | 0.036 (2) | 0.025 (2) | 0.036 (2) | 0.007 (2) | 0.008 (2) | 0.002 (2) |
C6 | 0.035 (2) | 0.034 (2) | 0.026 (2) | 0.003 (2) | 0.002 (2) | 0.001 (2) |
C7 | 0.030 (2) | 0.038 (2) | 0.021 (2) | 0.004 (2) | 0.002 (2) | 0.007 (2) |
C8 | 0.027 (2) | 0.027 (2) | 0.02192) | 0.007 (2) | 0.002 (1) | 0.006 (1) |
C9 | 0.045 (3) | 0.046 (3) | 0.029 (2) | 0.004 (2) | −0.009 (2) | 0.014 (2) |
C10 | 0.048 (3) | 0.056 (3) | 0.036 (2) | 0.018 (2) | −0.001 (2) | 0.026 (2) |
C11 | 0.036 (2) | 0.041 (2) | 0.033 (2) | 0.013 (2) | 0.004 (2) | 0.021 (2) |
C12 | 0.030 (2) | 0.030 (2) | 0.024 (2) | 0.006 (2) | 0.002 (2) | 0.012 (2) |
C13 | 0.056 (3) | 0.045 (3) | 0.043 (2) | 0.026 (2) | 0.009 (2) | 0.027 (2) |
C14 | 0.061 (3) | 0.030 (2) | 0.044 (2) | 0.019 (2) | 0.011 (2) | 0.016 (2) |
C15 | 0.045 (2) | 0.023 (2) | 0.033 (2) | 0.006 (2) | 0.005 (2) | 0.008 (2) |
Geometric parameters (Å, º) top
Cu1—O1 | 1.940 (2) | C8—C12 | 1.437 (5) |
Cu1—O4i | 1.947 (2) | C9—C10 | 1.344 (6) |
Cu1—O1W | 2.287 (3) | C10—C11 | 1.441 (6) |
Cu1—N1 | 2.021 (3) | C11—C12 | 1.399 (5) |
Cu1—N2 | 2.029 (3) | C11—C13 | 1.401 (6) |
P1—O1 | 1.511 (3) | C13—C14 | 1.358 (6) |
P1—O2 | 1.519 (3) | C14—C15 | 1.400 (6) |
P1—O3 | 1.564 (3) | O1W—H1W1 | 0.84 (1) |
P1—C1 | 1.794 (3) | O1W—H1W2 | 0.83 (1) |
O4—C3 | 1.277 (4) | O3—H3O | 0.84 (1) |
O5—C3 | 1.235 (4) | C1—H1A | 0.97 |
N1—C4 | 1.336 (5) | C1—H1B | 0.97 |
N1—C8 | 1.343 (5) | C2—H2A | 0.97 |
N2—C15 | 1.336 (5) | C2—H2B | 0.97 |
N2—C12 | 1.355 (4) | C4—H4 | 0.93 |
C1—C2 | 1.519 (5) | C5—H5 | 0.93 |
C2—C3 | 1.517 (5) | C6—H6 | 0.93 |
C4—C5 | 1.383 (5) | C9—H9 | 0.93 |
C5—C6 | 1.356 (6) | C10—H10 | 0.93 |
C6—C7 | 1.408 (6) | C13—H13 | 0.93 |
C7—C8 | 1.407 (5) | C14—H14 | 0.93 |
C7—C9 | 1.432 (6) | C15—H15 | 0.93 |
O1—Cu1—O4i | 93.8 (1) | C12—C11—C13 | 116.9 (4) |
O1—Cu1—O1W | 92.6 (1) | C12—C11—C10 | 118.3 (4) |
O1—Cu1—N1 | 90.2 (1) | C13—C11—C10 | 124.8 (4) |
O1—Cu1—N2 | 169.6 (1) | N2—C12—C11 | 123.7 (3) |
O4i—Cu1—O1W | 94.7 (1) | N2—C12—C8 | 116.0 (3) |
O4i—Cu1—N1 | 167.9 (1) | C11—C12—C8 | 120.4 (3) |
O4i—Cu1—N2 | 93.4 (1) | C14—C13—C11 | 119.7 (4) |
O1W—Cu1—N1 | 96.5 (1) | C13—C14—C15 | 120.0 (4) |
O1W—Cu1—N2 | 94.2 (1) | N2—C15—C14 | 122.0 (4) |
N1—Cu1—N2 | 81.3 (1) | Cu1—O1W—H1W1 | 95 (3) |
O1—P1—O2 | 114.7 (2) | Cu1—O1W—H1W2 | 94 (3) |
O1—P1—O3 | 105.8 (2) | H1W1—O1W—H1W2 | 113 (2) |
O2—P1—O3 | 111.4 (2) | P1—O3—H3O | 107 (3) |
O1—P1—C1 | 109.9 (2) | C2—C1—H1A | 109.0 |
O2—P1—C1 | 108.4 (2) | P1—C1—H1A | 109.0 |
O3—P1—C1 | 106.3 (2) | C2—C1—H1B | 109.0 |
P1—O1—Cu1 | 132.0 (2) | P1—C1—H1B | 109.0 |
C3—O4—Cu1i | 111.8 (2) | H1A—C1—H1B | 107.8 |
C4—N1—C8 | 118.4 (3) | C3—C2—H2A | 108.6 |
C4—N1—Cu1 | 128.5 (3) | C1—C2—H2A | 108.6 |
C8—N1—Cu1 | 113.1 (2) | C3—C2—H2B | 108.6 |
C15—N2—C12 | 117.8 (3) | C1—C2—H2B | 108.6 |
C15—N2—Cu1 | 129.4 (3) | H2A—C2—H2B | 107.6 |
C12—N2—Cu1 | 112.8 (2) | N1—C4—H4 | 119.0 |
C2—C1—P1 | 112.8 (2) | C5—C4—H4 | 119.0 |
C3—C2—C1 | 114.5 (3) | C6—C5—H5 | 119.9 |
O5—C3—O4 | 123.2 (3) | C4—C5—H5 | 119.9 |
O5—C3—C2 | 121.9 (3) | C5—C6—H6 | 120.1 |
O4—C3—C2 | 114.9 (3) | C7—C6—H6 | 120.1 |
N1—C4—C5 | 122.0 (4) | C10—C9—H9 | 119.2 |
C6—C5—C4 | 120.2 (4) | C7—C9—H9 | 119.2 |
C5—C6—C7 | 119.7 (3) | C9—C10—H10 | 119.3 |
C8—C7—C6 | 116.4 (4) | C11—C10—H10 | 119.3 |
C8—C7—C9 | 118.5 (4) | C14—C13—H13 | 120.2 |
C6—C7—C9 | 125.1 (3) | C11—C13—H13 | 120.2 |
N1—C8—C7 | 123.3 (3) | C13—C14—H14 | 120.0 |
N1—C8—C12 | 116.8 (3) | C15—C14—H14 | 120.0 |
C7—C8—C12 | 119.9 (3) | N2—C15—H15 | 119.0 |
C10—C9—C7 | 121.5 (4) | C14—C15—H15 | 119.0 |
C9—C10—C11 | 121.4 (4) | ||
O2—P1—O1—Cu1 | 42.3 (3) | C4—C5—C6—C7 | 0.2 (6) |
O3—P1—O1—Cu1 | 165.4 (2) | C5—C6—C7—C8 | 0.3 (6) |
C1—P1—O1—Cu1 | −80.1 (2) | C5—C6—C7—C9 | −178.8 (4) |
O4i—Cu1—O1—P1 | 69.2 (2) | C4—N1—C8—C7 | −0.6 (6) |
N1—Cu1—O1—P1 | −122.2 (2) | Cu1—N1—C8—C7 | −179.8 (3) |
N2—Cu1—O1—P1 | −156.8 (5) | C4—N1—C8—C12 | 179.3 (3) |
O1W—Cu1—O1—P1 | −25.7 (2) | Cu1—N1—C8—C12 | 0.2 (4) |
O1—Cu1—N1—C4 | 6.0 (3) | C6—C7—C8—N1 | 0.0 (6) |
O4i—Cu1—N1—C4 | 115.4 (5) | C9—C7—C8—N1 | 179.1 (4) |
N2—Cu1—N1—C4 | −180.0 (3) | C6—C7—C8—C12 | −180.0 (3) |
O1W—Cu1—N1—C4 | −86.7 (3) | C9—C7—C8—C12 | −0.9 (6) |
O1—Cu1—N1—C8 | −175.0 (3) | C8—C7—C9—C10 | 0.5 (7) |
O4i—Cu1—N1—C8 | −65.5 (6) | C6—C7—C9—C10 | 179.6 (4) |
N2—Cu1—N1—C8 | −0.9 (3) | C7—C9—C10—C11 | 0.6 (7) |
O1W—Cu1—N1—C8 | 92.4 (3) | C9—C10—C11—C12 | −1.3 (7) |
O1—Cu1—N2—C15 | −144.3 (6) | C9—C10—C11—C13 | 177.4 (5) |
O4i—Cu1—N2—C15 | −10.3 (4) | C15—N2—C12—C11 | −0.1 (6) |
N1—Cu1—N2—C15 | −179.3 (4) | Cu1—N2—C12—C11 | 179.2 (3) |
O1W—Cu1—N2—C15 | 84.7 (4) | C15—N2—C12—C8 | 178.8 (3) |
O1—Cu1—N2—C12 | 36.5 (8) | Cu1—N2—C12—C8 | −1.9 (4) |
O4i—Cu1—N2—C12 | 170.6 (3) | C13—C11—C12—N2 | 1.0 (6) |
N1—Cu1—N2—C12 | 1.5 (3) | C10—C11—C12—N2 | 179.9 (4) |
O1W—Cu1—N2—C12 | −94.5 (3) | C13—C11—C12—C8 | −177.9 (4) |
O1—P1—C1—C2 | −55.1 (3) | C10—C11—C12—C8 | 1.0 (6) |
O2—P1—C1—C2 | 178.9 (3) | N1—C8—C12—N2 | 1.2 (5) |
O3—P1—C1—C2 | 59.0 (3) | C7—C8—C12—N2 | −178.9 (3) |
P1—C1—C2—C3 | 172.6 (3) | N1—C8—C12—C11 | −179.8 (3) |
Cu1i—O4—C3—O5 | −3.9 (4) | C7—C8—C12—C11 | 0.1 (6) |
Cu1i—O4—C3—C2 | 176.0 (2) | C12—C11—C13—C14 | −1.6 (7) |
C1—C2—C3—O5 | 10.3 (5) | C10—C11—C13—C14 | 179.7 (4) |
C1—C2—C3—O4 | −169.7 (3) | C11—C13—C14—C15 | 1.3 (7) |
C8—N1—C4—C5 | 1.1 (6) | C12—N2—C15—C14 | −0.3 (6) |
Cu1—N1—C4—C5 | −179.9 (3) | Cu1—N2—C15—C14 | −179.4 (3) |
N1—C4—C5—C6 | −0.9 (6) | C13—C14—C15—N2 | −0.3 (7) |
Symmetry code: (i) −x+2, −y+2, −z+1. |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H1W1···O2 | 0.84 (1) | 1.91 (1) | 2.732 (4) | 167 (4) |
O1W—H1W2···O4ii | 0.83 (1) | 2.19 (3) | 2.789 (4) | 129 (4) |
O3—H3O···O2iii | 0.84 (1) | 1.76 (2) | 2.569 (4) | 162 (4) |
Symmetry codes: (ii) x−1, y, z; (iii) −x+1, −y+1, −z+1. |
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