Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536805027571/xu6047sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536805027571/xu6047Isup2.hkl |
CCDC reference: 287761
Key indicators
- Single-crystal X-ray study
- T = 294 K
- Mean (n-O) = 0.002 Å
- R factor = 0.042
- wR factor = 0.111
- Data-to-parameter ratio = 18.9
checkCIF/PLATON results
No syntax errors found
Alert level C PLAT042_ALERT_1_C Calc. and Rep. MoietyFormula Strings Differ .... ? PLAT242_ALERT_2_C Check Low Ueq as Compared to Neighbors for Mn PLAT601_ALERT_2_C Structure Contains Solvent Accessible VOIDS of . 54.00 A 3
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 3 ALERT level C = Check and explain 0 ALERT level G = General alerts; check 1 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 2 ALERT type 2 Indicator that the structure model may be wrong or deficient 0 ALERT type 3 Indicator that the structure quality may be low 0 ALERT type 4 Improvement, methodology, query or suggestion
An acetonitrile solution (12 ml) of MnCl2·4H2O (0.020 g, 3 mmol) and HMTA (0.042 g, 3 mmol) was transferred into a 23 ml Teflon-lined autoclave and heated at 358 K for 72 h. The autoclave was then cooled over a period of 12 h and the solution was filtered. Pale-yellow single crystals of (I) were obtained from the filtrate after 2 d. Elemental analysis for C12H44Cl2MnN8O10, calculated: C 24.50, H 7.71, N 18.64%; found: C 24.78, H 7.51, N 18.72%.
Water H atoms were located in a difference Fourier map and refined as riding in their as-found positions relative to the O atoms, with Uiso(H) = 1.5Ueq(O). H atoms on C atoms were placed in calculated positions with C—H = 0.97 Å and refined in riding mode, with Uiso(H) = 1.2Ueq(C).
Data collection: SMART (Bruker, 1998); cell refinement: SAINT (Bruker, 1998); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: SHELXTL (Bruker, 1997); software used to prepare material for publication: SHELXTL.
Fig. 1. The molecular structure of (I), with 30% probability displacement ellipsoids. H atoms have been omitted for clarity. |
[Mn(H2O)6]Cl2·2C6H12N4·4H2O | Z = 1 |
Mr = 586.39 | F(000) = 311 |
Triclinic, P1 | Dx = 1.369 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 9.337 (3) Å | Cell parameters from 1215 reflections |
b = 9.531 (2) Å | θ = 2.3–24.6° |
c = 9.538 (2) Å | µ = 0.71 mm−1 |
α = 119.477 (4)° | T = 294 K |
β = 101.018 (5)° | Block, pale yellow |
γ = 94.140 (5)° | 0.22 × 0.18 × 0.16 mm |
V = 711.5 (3) Å3 |
Bruker SMART CCD area-detector diffractometer | 2850 independent reflections |
Radiation source: fine-focus sealed tube | 1975 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.025 |
ϕ and ω scans | θmax = 26.4°, θmin = 2.3° |
Absorption correction: multi-scan (SADABS; Bruker, 1998) | h = −11→10 |
Tmin = 0.840, Tmax = 0.893 | k = −10→11 |
4034 measured reflections | l = −11→8 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.042 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.111 | H-atom parameters constrained |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0517P)2] where P = (Fo2 + 2Fc2)/3 |
2850 reflections | (Δ/σ)max < 0.001 |
151 parameters | Δρmax = 0.28 e Å−3 |
0 restraints | Δρmin = −0.27 e Å−3 |
[Mn(H2O)6]Cl2·2C6H12N4·4H2O | γ = 94.140 (5)° |
Mr = 586.39 | V = 711.5 (3) Å3 |
Triclinic, P1 | Z = 1 |
a = 9.337 (3) Å | Mo Kα radiation |
b = 9.531 (2) Å | µ = 0.71 mm−1 |
c = 9.538 (2) Å | T = 294 K |
α = 119.477 (4)° | 0.22 × 0.18 × 0.16 mm |
β = 101.018 (5)° |
Bruker SMART CCD area-detector diffractometer | 2850 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 1998) | 1975 reflections with I > 2σ(I) |
Tmin = 0.840, Tmax = 0.893 | Rint = 0.025 |
4034 measured reflections |
R[F2 > 2σ(F2)] = 0.042 | 0 restraints |
wR(F2) = 0.111 | H-atom parameters constrained |
S = 1.04 | Δρmax = 0.28 e Å−3 |
2850 reflections | Δρmin = −0.27 e Å−3 |
151 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Mn | 0.5000 | 0.5000 | 0.5000 | 0.03063 (18) | |
Cl | 0.81455 (9) | 0.06236 (10) | 0.32135 (10) | 0.0601 (3) | |
N1 | 0.6664 (3) | 0.0410 (3) | 0.8491 (3) | 0.0384 (6) | |
N2 | 0.6603 (3) | 0.3259 (3) | 1.0453 (3) | 0.0369 (5) | |
N3 | 0.6652 (2) | 0.2412 (3) | 0.7604 (3) | 0.0357 (5) | |
N4 | 0.8857 (2) | 0.2548 (3) | 0.9556 (3) | 0.0390 (6) | |
O1 | 0.6255 (2) | 0.5573 (2) | 0.3598 (2) | 0.0462 (5) | |
H1C | 0.7148 | 0.6405 | 0.4000 | 0.069* | |
H1D | 0.6341 | 0.4855 | 0.2575 | 0.069* | |
O2 | 0.6263 (2) | 0.7040 (2) | 0.7362 (2) | 0.0504 (6) | |
H2C | 0.6201 | 0.8057 | 0.7599 | 0.076* | |
H2D | 0.6795 | 0.7012 | 0.8204 | 0.076* | |
O3 | 0.6372 (2) | 0.3333 (3) | 0.5208 (2) | 0.0545 (6) | |
H3C | 0.6914 | 0.2776 | 0.4647 | 0.082* | |
H3D | 0.6393 | 0.2991 | 0.5866 | 0.082* | |
O4 | 0.8039 (2) | 0.7197 (2) | 1.0046 (2) | 0.0502 (5) | |
H4C | 0.7856 | 0.8207 | 1.0842 | 0.075* | |
H4D | 0.8979 | 0.7228 | 1.0016 | 0.075* | |
O5 | 0.8512 (3) | 0.8047 (3) | 0.4465 (3) | 0.0850 (9) | |
H5C | 0.8409 | 0.8754 | 0.4055 | 0.127* | |
H5D | 0.9363 | 0.8478 | 0.5201 | 0.127* | |
C1 | 0.6090 (3) | 0.1522 (3) | 0.9890 (3) | 0.0400 (7) | |
H1A | 0.6415 | 0.1349 | 1.0812 | 0.048* | |
H1B | 0.5012 | 0.1265 | 0.9551 | 0.048* | |
C2 | 0.6077 (3) | 0.3474 (3) | 0.9030 (3) | 0.0398 (7) | |
H2A | 0.6394 | 0.4613 | 0.9371 | 0.048* | |
H2B | 0.4998 | 0.3220 | 0.8690 | 0.048* | |
C3 | 0.6145 (3) | 0.0698 (3) | 0.7107 (3) | 0.0400 (7) | |
H3A | 0.6517 | −0.0022 | 0.6169 | 0.048* | |
H3B | 0.5067 | 0.0431 | 0.6750 | 0.048* | |
C4 | 0.8232 (3) | 0.3615 (4) | 1.0938 (3) | 0.0428 (7) | |
H4A | 0.8583 | 0.3464 | 1.1871 | 0.051* | |
H4B | 0.8584 | 0.4754 | 1.1303 | 0.051* | |
C5 | 0.8291 (3) | 0.0828 (3) | 0.9014 (4) | 0.0438 (7) | |
H5A | 0.8680 | 0.0107 | 0.8092 | 0.053* | |
H5B | 0.8647 | 0.0646 | 0.9924 | 0.053* | |
C6 | 0.8291 (3) | 0.2793 (4) | 0.8161 (3) | 0.0425 (7) | |
H6A | 0.8685 | 0.2097 | 0.7233 | 0.051* | |
H6B | 0.8641 | 0.3926 | 0.8502 | 0.051* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Mn | 0.0398 (4) | 0.0265 (3) | 0.0278 (3) | 0.0094 (3) | 0.0106 (3) | 0.0147 (3) |
Cl | 0.0645 (6) | 0.0589 (5) | 0.0519 (5) | 0.0294 (4) | 0.0167 (4) | 0.0222 (4) |
N1 | 0.0468 (15) | 0.0290 (12) | 0.0361 (12) | 0.0069 (11) | 0.0053 (11) | 0.0164 (10) |
N2 | 0.0429 (14) | 0.0332 (13) | 0.0342 (12) | 0.0074 (11) | 0.0156 (11) | 0.0151 (10) |
N3 | 0.0404 (14) | 0.0400 (13) | 0.0363 (12) | 0.0145 (11) | 0.0154 (10) | 0.0239 (11) |
N4 | 0.0351 (13) | 0.0395 (14) | 0.0387 (13) | 0.0084 (11) | 0.0091 (10) | 0.0175 (11) |
O1 | 0.0568 (13) | 0.0406 (12) | 0.0372 (10) | 0.0003 (10) | 0.0224 (9) | 0.0148 (9) |
O2 | 0.0725 (15) | 0.0274 (11) | 0.0357 (11) | 0.0040 (10) | −0.0072 (10) | 0.0130 (9) |
O3 | 0.0804 (16) | 0.0651 (15) | 0.0563 (13) | 0.0499 (12) | 0.0410 (12) | 0.0466 (12) |
O4 | 0.0405 (12) | 0.0491 (13) | 0.0502 (12) | 0.0088 (10) | 0.0041 (9) | 0.0205 (10) |
O5 | 0.0710 (18) | 0.084 (2) | 0.100 (2) | −0.0210 (15) | −0.0019 (15) | 0.0605 (17) |
C1 | 0.0472 (18) | 0.0367 (16) | 0.0407 (16) | 0.0042 (13) | 0.0107 (13) | 0.0240 (14) |
C2 | 0.0462 (18) | 0.0337 (15) | 0.0491 (17) | 0.0161 (13) | 0.0212 (14) | 0.0243 (14) |
C3 | 0.0469 (18) | 0.0373 (16) | 0.0318 (14) | 0.0123 (13) | 0.0078 (12) | 0.0152 (13) |
C4 | 0.0451 (18) | 0.0371 (17) | 0.0361 (15) | 0.0023 (14) | 0.0100 (13) | 0.0126 (13) |
C5 | 0.0502 (19) | 0.0420 (17) | 0.0429 (16) | 0.0206 (14) | 0.0099 (14) | 0.0239 (14) |
C6 | 0.0494 (18) | 0.0432 (17) | 0.0458 (17) | 0.0163 (14) | 0.0264 (14) | 0.0253 (14) |
Mn—O1 | 2.1642 (17) | O2—H2C | 0.8899 |
Mn—O1i | 2.1642 (17) | O2—H2D | 0.8730 |
Mn—O2i | 2.1421 (18) | O3—H3C | 0.8292 |
Mn—O2 | 2.1421 (18) | O3—H3D | 0.8358 |
Mn—O3 | 2.1707 (19) | O4—H4C | 0.9419 |
Mn—O3i | 2.1707 (19) | O4—H4D | 0.8823 |
N1—C5 | 1.464 (4) | O5—H5C | 0.9338 |
N1—C1 | 1.467 (3) | O5—H5D | 0.8656 |
N1—C3 | 1.478 (3) | C1—H1A | 0.9700 |
N2—C4 | 1.465 (4) | C1—H1B | 0.9700 |
N2—C2 | 1.470 (3) | C2—H2A | 0.9700 |
N2—C1 | 1.473 (3) | C2—H2B | 0.9700 |
N3—C3 | 1.469 (3) | C3—H3A | 0.9700 |
N3—C2 | 1.471 (3) | C3—H3B | 0.9700 |
N3—C6 | 1.475 (3) | C4—H4A | 0.9700 |
N4—C6 | 1.470 (3) | C4—H4B | 0.9700 |
N4—C5 | 1.473 (4) | C5—H5A | 0.9700 |
N4—C4 | 1.475 (3) | C5—H5B | 0.9700 |
O1—H1C | 0.9771 | C6—H6A | 0.9700 |
O1—H1D | 0.8988 | C6—H6B | 0.9700 |
O2i—Mn—O2 | 180.0 | H5C—O5—H5D | 103.6 |
O2i—Mn—O1 | 86.17 (8) | N1—C1—N2 | 111.9 (2) |
O2—Mn—O1 | 93.83 (8) | N1—C1—H1A | 109.2 |
O2i—Mn—O1i | 93.83 (8) | N2—C1—H1A | 109.2 |
O2—Mn—O1i | 86.17 (8) | N1—C1—H1B | 109.2 |
O1—Mn—O1i | 180.000 (1) | N2—C1—H1B | 109.2 |
O2i—Mn—O3 | 87.53 (8) | H1A—C1—H1B | 107.9 |
O2—Mn—O3 | 92.47 (8) | N2—C2—N3 | 111.8 (2) |
O1—Mn—O3 | 94.45 (8) | N2—C2—H2A | 109.2 |
O1i—Mn—O3 | 85.55 (8) | N3—C2—H2A | 109.2 |
O2i—Mn—O3i | 92.47 (8) | N2—C2—H2B | 109.2 |
O2—Mn—O3i | 87.53 (8) | N3—C2—H2B | 109.2 |
O1—Mn—O3i | 85.55 (8) | H2A—C2—H2B | 107.9 |
O1i—Mn—O3i | 94.45 (8) | N3—C3—N1 | 111.7 (2) |
O3—Mn—O3i | 180.000 (1) | N3—C3—H3A | 109.3 |
C5—N1—C1 | 108.6 (2) | N1—C3—H3A | 109.3 |
C5—N1—C3 | 108.3 (2) | N3—C3—H3B | 109.3 |
C1—N1—C3 | 107.9 (2) | N1—C3—H3B | 109.3 |
C4—N2—C2 | 108.9 (2) | H3A—C3—H3B | 107.9 |
C4—N2—C1 | 108.3 (2) | N2—C4—N4 | 112.2 (2) |
C2—N2—C1 | 107.6 (2) | N2—C4—H4A | 109.2 |
C3—N3—C2 | 108.1 (2) | N4—C4—H4A | 109.2 |
C3—N3—C6 | 108.2 (2) | N2—C4—H4B | 109.2 |
C2—N3—C6 | 108.3 (2) | N4—C4—H4B | 109.2 |
C6—N4—C5 | 108.0 (2) | H4A—C4—H4B | 107.9 |
C6—N4—C4 | 107.7 (2) | N1—C5—N4 | 112.2 (2) |
C5—N4—C4 | 108.0 (2) | N1—C5—H5A | 109.2 |
Mn—O1—H1C | 129.5 | N4—C5—H5A | 109.2 |
Mn—O1—H1D | 125.6 | N1—C5—H5B | 109.2 |
H1C—O1—H1D | 100.1 | N4—C5—H5B | 109.2 |
Mn—O2—H2C | 119.3 | H5A—C5—H5B | 107.9 |
Mn—O2—H2D | 127.6 | N4—C6—N3 | 112.3 (2) |
H2C—O2—H2D | 112.8 | N4—C6—H6A | 109.1 |
Mn—O3—H3C | 133.5 | N3—C6—H6A | 109.1 |
Mn—O3—H3D | 126.1 | N4—C6—H6B | 109.1 |
H3C—O3—H3D | 100.0 | N3—C6—H6B | 109.1 |
H4C—O4—H4D | 113.3 | H6A—C6—H6B | 107.9 |
C5—N1—C1—N2 | 58.1 (3) | C2—N2—C4—N4 | −58.3 (3) |
C3—N1—C1—N2 | −59.1 (3) | C1—N2—C4—N4 | 58.4 (3) |
C4—N2—C1—N1 | −58.1 (3) | C6—N4—C4—N2 | 58.3 (3) |
C2—N2—C1—N1 | 59.4 (3) | C5—N4—C4—N2 | −58.2 (3) |
C4—N2—C2—N3 | 57.9 (3) | C1—N1—C5—N4 | −58.2 (3) |
C1—N2—C2—N3 | −59.4 (3) | C3—N1—C5—N4 | 58.8 (3) |
C3—N3—C2—N2 | 59.4 (3) | C6—N4—C5—N1 | −58.3 (3) |
C6—N3—C2—N2 | −57.6 (3) | C4—N4—C5—N1 | 58.0 (3) |
C2—N3—C3—N1 | −58.8 (3) | C5—N4—C6—N3 | 57.9 (3) |
C6—N3—C3—N1 | 58.3 (3) | C4—N4—C6—N3 | −58.5 (3) |
C5—N1—C3—N3 | −58.7 (3) | C3—N3—C6—N4 | −58.3 (3) |
C1—N1—C3—N3 | 58.7 (3) | C2—N3—C6—N4 | 58.6 (3) |
Symmetry code: (i) −x+1, −y+1, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1C···O5 | 0.98 | 1.75 | 2.717 (4) | 167 |
O1—H1D···N2ii | 0.90 | 1.92 | 2.817 (3) | 176 |
O2—H2C···N1iii | 0.89 | 1.94 | 2.808 (4) | 163 |
O2—H2D···O4 | 0.87 | 1.83 | 2.700 (3) | 173 |
O3—H3C···Cl | 0.83 | 2.36 | 3.165 (3) | 163 |
O3—H3D···N3 | 0.84 | 1.97 | 2.800 (4) | 173 |
O4—H4C···Cliv | 0.94 | 2.25 | 3.151 (2) | 161 |
O4—H4D···N4v | 0.88 | 1.96 | 2.827 (3) | 168 |
O5—H5C···Cliii | 0.93 | 2.30 | 3.228 (3) | 176 |
O5—H5D···Clvi | 0.87 | 2.35 | 3.205 (3) | 170 |
Symmetry codes: (ii) x, y, z−1; (iii) x, y+1, z; (iv) x, y+1, z+1; (v) −x+2, −y+1, −z+2; (vi) −x+2, −y+1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | [Mn(H2O)6]Cl2·2C6H12N4·4H2O |
Mr | 586.39 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 294 |
a, b, c (Å) | 9.337 (3), 9.531 (2), 9.538 (2) |
α, β, γ (°) | 119.477 (4), 101.018 (5), 94.140 (5) |
V (Å3) | 711.5 (3) |
Z | 1 |
Radiation type | Mo Kα |
µ (mm−1) | 0.71 |
Crystal size (mm) | 0.22 × 0.18 × 0.16 |
Data collection | |
Diffractometer | Bruker SMART CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 1998) |
Tmin, Tmax | 0.840, 0.893 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 4034, 2850, 1975 |
Rint | 0.025 |
(sin θ/λ)max (Å−1) | 0.626 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.042, 0.111, 1.04 |
No. of reflections | 2850 |
No. of parameters | 151 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.28, −0.27 |
Computer programs: SMART (Bruker, 1998), SAINT (Bruker, 1998), SAINT, SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), SHELXTL (Bruker, 1997), SHELXTL.
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1C···O5 | 0.98 | 1.75 | 2.717 (4) | 167 |
O1—H1D···N2i | 0.90 | 1.92 | 2.817 (3) | 176 |
O2—H2C···N1ii | 0.89 | 1.94 | 2.808 (4) | 163 |
O2—H2D···O4 | 0.87 | 1.83 | 2.700 (3) | 173 |
O3—H3C···Cl | 0.83 | 2.36 | 3.165 (3) | 163 |
O3—H3D···N3 | 0.84 | 1.97 | 2.800 (4) | 173 |
O4—H4C···Cliii | 0.94 | 2.25 | 3.151 (2) | 161 |
O4—H4D···N4iv | 0.88 | 1.96 | 2.827 (3) | 168 |
O5—H5C···Clii | 0.93 | 2.30 | 3.228 (3) | 176 |
O5—H5D···Clv | 0.87 | 2.35 | 3.205 (3) | 170 |
Symmetry codes: (i) x, y, z−1; (ii) x, y+1, z; (iii) x, y+1, z+1; (iv) −x+2, −y+1, −z+2; (v) −x+2, −y+1, −z+1. |
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Hexamethylenetetramine (HMTA) has attracted attention because of the desire to construct new supramolecular architectures via hydrogen bonding (Carlucci et al., 1995; Ermer & Eling, 1994; Chopra et al., 2005). In order to investigate in detail the contribution of HMTA to the formation of hydrogen bonds, we report here the X-ray structure of the title compound, (I).
The molecular structure of (I) is shown in Fig. 1. The crystal of (I) consists of the MnII complex cations, Cl− anions, solvent water and free HMTA molecules. The MnII atom is located on an inversion centre and is coordinated by six water molecules in a distorted octahedral geometry (Table 1). The HMTA molecule is linked to the MnII complex cation via three O—H···N hydrogen bonds, while atom N4 of the HMTA is hydrogen-bonded to the solvent water molecule. The Cl− anions link to the MnII complex cation via O—H···Cl hydrogen bonding (Table 2).