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The title compound, {Na2[Zn(C3H2O4)2]·2H2O}n, is a three-dimensional polymeric complex bridged by malonate dianions. The malonate ligand exhibits versatile coordination modes and links two ZnII and four NaI atoms. The Zn atom occupies a special position in an inversion centre and is chelated by two malonate ligands [Zn—O = 2.0230 (10) and 2.0875 (11) Å]; two other malonates are involved in monodentate coordination of the Zn atom [Zn—O = 2.2789 (12) Å], thus completing its octahedral coordination environment. The Na atom also has a distorted octahedral coordination, formed by four carboxylate O atoms of four malonate ligands [2.4328 (15)–2.5493 (13) Å] and two water molecules [2.3749 (15) and 2.4144 (14) Å].
Supporting information
CCDC reference: 226652
Key indicators
- Single-crystal X-ray study
- T = 295 K
- Mean (C-C) = 0.002 Å
- R factor = 0.023
- wR factor = 0.056
- Data-to-parameter ratio = 13.7
checkCIF/PLATON results
No syntax errors found
Alert level C
PLAT042_ALERT_1_C Calc. and Rep. MoietyFormula Strings Differ .... ?
0 ALERT level A = In general: serious problem
0 ALERT level B = Potentially serious problem
1 ALERT level C = Check and explain
0 ALERT level G = General alerts; check
1 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
0 ALERT type 2 Indicator that the structure model may be wrong or deficient
0 ALERT type 3 Indicator that the structure quality may be low
0 ALERT type 4 Improvement, methodology, query or suggestion
Data collection: PROCESS-AUTO (Rigaku, 1998); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku/MSC and Rigaku, 2002); program(s) used to solve structure: SIR92 (Altomare et al., 1993); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).
Crystal data top
Na2[Zn(C3H2O4)2]·2H2O | F(000) = 704 |
Mr = 351.49 | Dx = 2.198 Mg m−3 |
Orthorhombic, Pbca | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ac 2ab | Cell parameters from 8742 reflections |
a = 6.8359 (10) Å | θ = 2.5–24.5° |
b = 9.3875 (13) Å | µ = 2.44 mm−1 |
c = 16.5518 (14) Å | T = 295 K |
V = 1062.2 (2) Å3 | Prism, colorless |
Z = 4 | 0.26 × 0.20 × 0.19 mm |
Data collection top
Rigaku R-AXIS RAPID diffractometer | 1206 independent reflections |
Radiation source: fine-focus sealed tube | 1089 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.021 |
Detector resolution: 10.00 pixels mm-1 | θmax = 27.4°, θmin = 2.5° |
ω scans | h = −8→8 |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | k = −12→12 |
Tmin = 0.530, Tmax = 0.626 | l = −21→21 |
8878 measured reflections | |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.023 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.056 | H-atom parameters constrained |
S = 1.17 | w = 1/[σ2(Fo2) + (0.026P)2 + 0.6078P] where P = (Fo2 + 2Fc2)/3 |
1206 reflections | (Δ/σ)max = 0.001 |
88 parameters | Δρmax = 0.30 e Å−3 |
0 restraints | Δρmin = −0.37 e Å−3 |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
Zn | 0.5000 | 0.0000 | 0.0000 | 0.01881 (10) | |
Na | 0.49869 (10) | −0.13327 (8) | 0.20158 (4) | 0.02557 (17) | |
O1 | 0.61212 (17) | 0.06455 (11) | 0.10703 (6) | 0.0194 (2) | |
O2 | 0.7021 (2) | 0.22662 (12) | 0.19722 (7) | 0.0268 (3) | |
O3 | 0.56485 (19) | 0.19501 (12) | −0.05437 (6) | 0.0204 (2) | |
O4 | 0.71367 (17) | 0.40542 (12) | −0.04577 (7) | 0.0213 (2) | |
O5 | 0.7003 (2) | −0.00375 (12) | 0.29618 (7) | 0.0263 (3) | |
C1 | 0.6344 (2) | 0.19311 (16) | 0.12926 (9) | 0.0166 (3) | |
C2 | 0.5712 (2) | 0.31520 (16) | 0.07490 (9) | 0.0168 (3) | |
H2A | 0.6296 | 0.4021 | 0.0955 | 0.020* | |
H2B | 0.4304 | 0.3254 | 0.0797 | 0.020* | |
C3 | 0.6212 (2) | 0.30374 (16) | −0.01457 (9) | 0.0164 (3) | |
H5A | 0.7172 | 0.0692 | 0.2637 | 0.050* | |
H5B | 0.6926 | 0.0253 | 0.3455 | 0.050* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Zn | 0.02894 (17) | 0.01336 (15) | 0.01414 (15) | −0.00364 (10) | −0.00306 (10) | 0.00003 (8) |
Na | 0.0270 (4) | 0.0255 (4) | 0.0242 (4) | 0.0026 (3) | 0.0007 (3) | 0.0004 (3) |
O1 | 0.0270 (6) | 0.0135 (5) | 0.0175 (5) | 0.0007 (5) | −0.0036 (4) | −0.0013 (4) |
O2 | 0.0429 (7) | 0.0210 (6) | 0.0167 (5) | −0.0065 (5) | −0.0077 (5) | −0.0010 (4) |
O3 | 0.0291 (6) | 0.0156 (5) | 0.0165 (5) | −0.0040 (5) | −0.0004 (5) | −0.0006 (4) |
O4 | 0.0264 (6) | 0.0177 (5) | 0.0199 (5) | −0.0055 (5) | −0.0008 (5) | 0.0040 (4) |
O5 | 0.0382 (7) | 0.0233 (6) | 0.0174 (6) | 0.0017 (5) | −0.0013 (5) | 0.0000 (4) |
C1 | 0.0173 (7) | 0.0163 (7) | 0.0162 (7) | −0.0024 (6) | 0.0016 (6) | −0.0004 (6) |
C2 | 0.0214 (7) | 0.0130 (7) | 0.0160 (7) | −0.0014 (6) | 0.0005 (6) | −0.0016 (5) |
C3 | 0.0175 (7) | 0.0145 (7) | 0.0171 (7) | 0.0020 (6) | −0.0015 (6) | 0.0010 (5) |
Geometric parameters (Å, º) top
Zn—O1 | 2.0230 (10) | O1—C1 | 1.2709 (18) |
Zn—O3 | 2.0875 (11) | O2—C1 | 1.2564 (19) |
Zn—O4i | 2.2789 (12) | O3—C3 | 1.2746 (18) |
Zn—Na | 3.5634 (7) | O4—C3 | 1.2558 (19) |
Na—O1 | 2.5493 (13) | O5—H5A | 0.878 |
Na—O2ii | 2.5338 (15) | O5—H5B | 0.862 |
Na—O2iii | 2.4328 (15) | C1—C2 | 1.520 (2) |
Na—O3iv | 2.5419 (13) | C2—C3 | 1.524 (2) |
Na—O5 | 2.4144 (14) | C2—H2A | 0.9700 |
Na—O5v | 2.3749 (15) | C2—H2B | 0.9700 |
Na—Nav | 3.7751 (7) | | |
| | | |
O1—Zn—O3 | 91.97 (4) | Navi—O2—Navii | 98.93 (5) |
O1—Zn—O4iii | 94.73 (4) | C3—O3—Zn | 122.93 (9) |
O3—Zn—O4iii | 90.91 (4) | C3—O3—Naiv | 136.87 (9) |
O5v—Na—O5 | 102.85 (5) | Zn—O3—Naiv | 100.20 (4) |
O5v—Na—O2iii | 177.90 (6) | C3—O4—Znviii | 126.27 (10) |
O5—Na—O2iii | 79.14 (5) | Naix—O5—Na | 104.04 (5) |
O5v—Na—O2ii | 77.88 (5) | Naix—O5—H5A | 107.2 |
O5—Na—O2ii | 98.16 (5) | Na—O5—H5A | 94.1 |
O2iii—Na—O2ii | 101.21 (5) | Naix—O5—H5B | 101.5 |
O5v—Na—O3iv | 89.14 (5) | Na—O5—H5B | 137.6 |
O5—Na—O3iv | 146.51 (5) | H5A—O5—H5B | 109.92 |
O2iii—Na—O3iv | 89.54 (5) | O2—C1—O1 | 122.76 (14) |
O2ii—Na—O3iv | 115.01 (5) | O2—C1—C2 | 116.48 (13) |
O5v—Na—O1 | 84.14 (5) | O1—C1—C2 | 120.71 (13) |
O5—Na—O1 | 81.82 (4) | C1—C2—C3 | 117.26 (13) |
O2iii—Na—O1 | 96.89 (5) | C1—C2—H2A | 108.0 |
O2ii—Na—O1 | 161.58 (5) | C3—C2—H2A | 108.0 |
O3iv—Na—O1 | 68.26 (4) | C1—C2—H2B | 108.0 |
C1—O1—Zn | 125.69 (10) | C3—C2—H2B | 108.0 |
C1—O1—Na | 123.40 (9) | H2A—C2—H2B | 107.2 |
Zn—O1—Na | 101.78 (5) | O4—C3—O3 | 123.25 (14) |
C1—O2—Navi | 118.14 (11) | O4—C3—C2 | 117.33 (13) |
C1—O2—Navii | 121.49 (11) | O3—C3—C2 | 119.41 (13) |
Symmetry codes: (i) x−1/2, −y+1/2, −z; (ii) −x+1, y−1/2, −z+1/2; (iii) −x+3/2, y−1/2, z; (iv) −x+1, −y, −z; (v) x−1/2, y, −z+1/2; (vi) −x+3/2, y+1/2, z; (vii) −x+1, y+1/2, −z+1/2; (viii) x+1/2, −y+1/2, −z; (ix) x+1/2, y, −z+1/2. |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O5—H5A···O2 | 0.88 | 1.85 | 2.7129 (17) | 169 |
O5—H5B···O4x | 0.86 | 1.92 | 2.7756 (17) | 172 |
Symmetry code: (x) x, −y+1/2, z+1/2. |
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