In the crystal structure of the title compound, 3,4,5-trihydroxybenzoic acid monohydrate, C7H6O5·H2O, the gallic acid molecule is essentially planar and has two intramolecular hydrogen bonds between hydroxyl groups. The H atoms of the three hydroxyl groups are oriented in the same direction around the ring, and form intra- and intermolecular hydrogen bonds. The crystal structure is stabilized by all available intermolecular hydrogen bonds, including also those involving the water molecule.
Supporting information
CCDC reference: 170921
Key indicators
- Single-crystal X-ray study
- T = 296 K
- Mean (C-C) = 0.005 Å
- R factor = 0.049
- wR factor = 0.188
- Data-to-parameter ratio = 15.0
checkCIF results
No syntax errors found
ADDSYM reports no extra symmetry
The crystal was obtained by slow evaporation of an ethanol solution.
All H atoms were located from difference Fourier maps and were not refined.
Data collection: MSC/AFC Diffractometer Control Software
(Molecular Structure Corporation & Rigaku Corporation, 1999); cell refinement: MSC/AFC Diffractometer Control Software; data reduction: TEXSAN (Molecular Structure Corporation & Rigaku Corporation, 1999); program(s) used to solve structure: SIR88 (Burla et al., 1989) and DIRDIF94 (Beurskens et al., 1994); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEPII (Johnson, 1976); software used to prepare material for publication: TEXSAN.
Crystal data top
C7H6O5·H2O | F(000) = 392.0 |
Mr = 188.13 | Dx = 1.636 Mg m−3 |
Monoclinic, P2/n | Mo Kα radiation, λ = 0.7107 Å |
a = 14.15 (1) Å | Cell parameters from 18 reflections |
b = 3.622 (9) Å | θ = 10.0–14.3° |
c = 15.028 (10) Å | µ = 0.15 mm−1 |
β = 97.52 (7)° | T = 296 K |
V = 764 (1) Å3 | Needle, colorless |
Z = 4 | 0.50 × 0.10 × 0.03 mm |
Data collection top
Rigaku AFC-5R diffractometer | θmax = 27.5°, θmin = 4° |
ω–2θ scans | h = 0→18 |
2109 measured reflections | k = −4→0 |
1766 independent reflections | l = −19→19 |
764 reflections with I > 2σ(I) | 3 standard reflections every 150 reflections |
Rint = 0.040 | intensity decay: 0.1% |
Refinement top
Refinement on F2 | H-atom parameters not refined |
R[F2 > 2σ(F2)] = 0.049 | w = 1/[σ2(Fo2) + (0.1P)2] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.188 | (Δ/σ)max < 0.001 |
S = 0.91 | Δρmax = 0.31 e Å−3 |
1766 reflections | Δρmin = −0.31 e Å−3 |
118 parameters | |
Crystal data top
C7H6O5·H2O | V = 764 (1) Å3 |
Mr = 188.13 | Z = 4 |
Monoclinic, P2/n | Mo Kα radiation |
a = 14.15 (1) Å | µ = 0.15 mm−1 |
b = 3.622 (9) Å | T = 296 K |
c = 15.028 (10) Å | 0.50 × 0.10 × 0.03 mm |
β = 97.52 (7)° | |
Data collection top
Rigaku AFC-5R diffractometer | Rint = 0.040 |
2109 measured reflections | 3 standard reflections every 150 reflections |
1766 independent reflections | intensity decay: 0.1% |
764 reflections with I > 2σ(I) | |
Refinement top
R[F2 > 2σ(F2)] = 0.049 | 118 parameters |
wR(F2) = 0.188 | H-atom parameters not refined |
S = 0.91 | Δρmax = 0.31 e Å−3 |
1766 reflections | Δρmin = −0.31 e Å−3 |
Special details top
Refinement. Refinement using reflections with F2 > -10.0 σ(F2). The
weighted R-factor (wR) and goodness of fit (S) are based
on F2. R-factor (gt) are based on F. The threshold
expression of F2 > 2.0 σ(F2) is used only for calculating
R-factor (gt). |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O1 | 0.3779 (2) | 0.2043 (9) | 0.7302 (2) | 0.0449 (8) | |
O2 | 0.4899 (2) | 0.4049 (9) | 0.6523 (2) | 0.0447 (9) | |
O3 | 0.1018 (2) | −0.1394 (8) | 0.5049 (2) | 0.0338 (7) | |
O4 | 0.1550 (2) | 0.0075 (8) | 0.3430 (2) | 0.0334 (7) | |
O5 | 0.3351 (2) | 0.2679 (8) | 0.3286 (2) | 0.0336 (7) | |
O6 | 0.5102 (2) | 0.4879 (8) | 0.1313 (2) | 0.0370 (7) | |
C1 | 0.3455 (2) | 0.175 (1) | 0.5732 (2) | 0.0243 (8) | |
C2 | 0.2535 (2) | 0.044 (1) | 0.5784 (2) | 0.0253 (8) | |
C3 | 0.1931 (2) | −0.0162 (10) | 0.5004 (2) | 0.0230 (8) | |
C4 | 0.2207 (2) | 0.0606 (10) | 0.4172 (2) | 0.0228 (8) | |
C5 | 0.3126 (2) | 0.191 (1) | 0.4124 (2) | 0.0248 (8) | |
C6 | 0.3740 (2) | 0.243 (1) | 0.4905 (2) | 0.0264 (8) | |
C7 | 0.4124 (3) | 0.272 (1) | 0.6544 (2) | 0.0280 (9) | |
H1 | 0.4126 | 0.2858 | 0.7748 | 0.0464* | |
H2 | 0.2292 | −0.0105 | 0.6347 | 0.0464* | |
H3 | 0.0777 | −0.2436 | 0.4565 | 0.0464* | |
H4 | 0.1808 | 0.0710 | 0.2901 | 0.0464* | |
H5 | 0.3893 | 0.3730 | 0.3331 | 0.0473* | |
H6 | 0.4346 | 0.3306 | 0.4847 | 0.0464* | |
H7 | 0.4673 | 0.3675 | 0.1493 | 0.0556* | |
H8 | 0.5347 | 0.3636 | 0.0958 | 0.0556* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O1 | 0.043 (2) | 0.070 (2) | 0.021 (1) | −0.018 (2) | 0.000 (1) | −0.006 (2) |
O2 | 0.028 (1) | 0.069 (2) | 0.036 (2) | −0.022 (2) | 0.000 (1) | 0.002 (2) |
O3 | 0.022 (1) | 0.048 (2) | 0.031 (1) | −0.012 (1) | 0.002 (1) | 0.000 (1) |
O4 | 0.026 (1) | 0.052 (2) | 0.022 (1) | −0.010 (1) | 0.0018 (10) | 0.003 (1) |
O5 | 0.028 (1) | 0.050 (2) | 0.024 (1) | −0.008 (1) | 0.005 (1) | −0.002 (1) |
O6 | 0.032 (1) | 0.052 (2) | 0.027 (1) | 0.000 (1) | 0.004 (1) | −0.009 (1) |
C1 | 0.025 (2) | 0.025 (2) | 0.022 (2) | −0.002 (2) | 0.002 (1) | −0.001 (2) |
C2 | 0.026 (2) | 0.025 (2) | 0.026 (2) | −0.001 (2) | 0.008 (1) | 0.002 (2) |
C3 | 0.020 (2) | 0.023 (2) | 0.027 (2) | −0.004 (2) | 0.003 (1) | 0.001 (2) |
C4 | 0.022 (2) | 0.023 (2) | 0.022 (2) | −0.003 (2) | −0.001 (1) | 0.000 (2) |
C5 | 0.025 (2) | 0.026 (2) | 0.025 (2) | −0.001 (2) | 0.007 (1) | 0.001 (2) |
C6 | 0.017 (2) | 0.032 (2) | 0.030 (2) | −0.008 (2) | 0.002 (1) | −0.002 (2) |
C7 | 0.027 (2) | 0.031 (2) | 0.025 (2) | −0.003 (2) | 0.001 (1) | −0.001 (2) |
Geometric parameters (Å, º) top
O1—C7 | 1.317 (5) | O6—H8 | 0.812 |
O1—H1 | 0.830 | C1—C2 | 1.396 (5) |
O2—C7 | 1.203 (5) | C1—C6 | 1.380 (5) |
O3—C3 | 1.373 (4) | C1—C7 | 1.487 (5) |
O3—H3 | 0.850 | C2—C3 | 1.376 (4) |
O4—C4 | 1.370 (4) | C2—H2 | 0.975 |
O4—H4 | 0.945 | C3—C4 | 1.391 (5) |
O5—C5 | 1.372 (4) | C4—C5 | 1.390 (5) |
O5—H5 | 0.851 | C5—C6 | 1.377 (4) |
O6—H7 | 0.820 | C6—H6 | 0.929 |
| | | |
O1···O6i | 2.686 (4) | O3···O6v | 2.769 (4) |
O1···O2ii | 3.576 (5) | O3···O3vi | 3.039 (5) |
O2···O5i | 2.718 (4) | O3···C3ii | 3.432 (5) |
O2···O6i | 3.275 (9) | O4···O5vii | 2.772 (4) |
O2···C6i | 3.321 (5) | O4···O6vii | 2.977 (4) |
O2···C7iii | 3.325 (5) | O5···C5iii | 3.602 (10) |
O2···C5i | 3.410 (5) | O6···O3viii | 2.747 (4) |
O2···C1iii | 3.569 (5) | O6···O4vii | 2.977 (4) |
O3···O6iv | 2.747 (4) | | |
| | | |
C7—O1—H1 | 112.7 | C2—C3—C4 | 121.0 (3) |
C3—O3—H3 | 112.3 | O4—C4—C3 | 117.4 (3) |
C4—O4—H4 | 110.6 | O4—C4—C5 | 123.2 (3) |
C5—O5—H5 | 109.5 | C3—C4—C5 | 119.3 (3) |
H7—O6—H8 | 108.7 | O5—C5—C4 | 116.8 (3) |
C2—C1—C6 | 119.7 (3) | O5—C5—C6 | 124.0 (3) |
C2—C1—C7 | 122.2 (3) | C4—C5—C6 | 119.6 (3) |
C6—C1—C7 | 118.0 (3) | C1—C6—C5 | 121.0 (3) |
C1—C2—C3 | 119.3 (3) | C1—C6—H6 | 121.8 |
C1—C2—H2 | 123.7 | C5—C6—H6 | 117.2 |
C3—C2—H2 | 117.0 | O1—C7—O2 | 122.6 (3) |
O3—C3—C2 | 119.8 (3) | O1—C7—C1 | 113.5 (3) |
O3—C3—C4 | 119.2 (3) | O2—C7—C1 | 123.8 (3) |
| | | |
O1—C7—C1—C2 | 2.7 (5) | O5—C5—C4—C3 | −178.9 (3) |
O1—C7—C1—C6 | 178.6 (3) | O5—C5—C6—C1 | 177.2 (3) |
O2—C7—C1—C2 | −175.3 (4) | C1—C2—C3—C4 | −1.9 (6) |
O2—C7—C1—C6 | 0.2 (6) | C1—C6—C5—C4 | −1.5 (6) |
O3—C3—C2—C1 | −179.0 (3) | C2—C1—C6—C5 | 1.4 (6) |
O3—C3—C4—O4 | −0.2 (5) | C2—C3—C4—C5 | 1.8 (6) |
O3—C3—C4—C5 | 179.0 (3) | C3—C2—C1—C6 | 0.3 (6) |
O4—C4—C3—C2 | −177.3 (3) | C3—C2—C1—C7 | 175.7 (4) |
O4—C4—C5—O5 | 0.9 (5) | C3—C4—C5—C6 | −0.1 (6) |
O4—C4—C5—C6 | 178.9 (4) | C5—C6—C1—C7 | −174.2 (4) |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) x, y−1, z; (iii) x, y+1, z; (iv) x−1/2, −y, z+1/2; (v) −x+1/2, y−1, −z+1/2; (vi) −x, −y, −z+1; (vii) −x+1/2, y, −z+1/2; (viii) x+1/2, −y, z−1/2. |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3···O4 | 0.850 | 2.328 | 2.692 (8) | 106.3 |
O4—H4···O5 | 0.945 | 2.306 | 2.752 (8) | 108.9 |
O3—H3···O6v | 0.850 | 1.949 | 2.770 (4) | 161.6 |
O4—H4···O5vii | 0.945 | 1.907 | 2.767 (8) | 150.0 |
O5—H5···O2i | 0.851 | 1.878 | 2.729 (4) | 177.7 |
O6—H7···O4vii | 0.820 | 2.182 | 2.977 (4) | 163.8 |
O6—H8···O3viii | 0.812 | 1.941 | 2.747 (4) | 170.9 |
O1—H1···O6i | 0.830 | 1.859 | 2.686 (4) | 174.2 |
Symmetry codes: (i) −x+1, −y+1, −z+1; (v) −x+1/2, y−1, −z+1/2; (vii) −x+1/2, y, −z+1/2; (viii) x+1/2, −y, z−1/2. |
Experimental details
Crystal data |
Chemical formula | C7H6O5·H2O |
Mr | 188.13 |
Crystal system, space group | Monoclinic, P2/n |
Temperature (K) | 296 |
a, b, c (Å) | 14.15 (1), 3.622 (9), 15.028 (10) |
β (°) | 97.52 (7) |
V (Å3) | 764 (1) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.15 |
Crystal size (mm) | 0.50 × 0.10 × 0.03 |
|
Data collection |
Diffractometer | Rigaku AFC-5R diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 2109, 1766, 764 |
Rint | 0.040 |
(sin θ/λ)max (Å−1) | 0.650 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.049, 0.188, 0.91 |
No. of reflections | 1766 |
No. of parameters | 118 |
No. of restraints | ? |
H-atom treatment | H-atom parameters not refined |
Δρmax, Δρmin (e Å−3) | 0.31, −0.31 |
Selected geometric parameters (Å, º) topO1—C7 | 1.317 (5) | C1—C6 | 1.380 (5) |
O2—C7 | 1.203 (5) | C1—C7 | 1.487 (5) |
O3—C3 | 1.373 (4) | C2—C3 | 1.376 (4) |
O4—C4 | 1.370 (4) | C3—C4 | 1.391 (5) |
O5—C5 | 1.372 (4) | C4—C5 | 1.390 (5) |
C1—C2 | 1.396 (5) | C5—C6 | 1.377 (4) |
| | | |
C2—C1—C6 | 119.7 (3) | C3—C4—C5 | 119.3 (3) |
C2—C1—C7 | 122.2 (3) | O5—C5—C4 | 116.8 (3) |
C6—C1—C7 | 118.0 (3) | O5—C5—C6 | 124.0 (3) |
C1—C2—C3 | 119.3 (3) | C4—C5—C6 | 119.6 (3) |
O3—C3—C2 | 119.8 (3) | C1—C6—C5 | 121.0 (3) |
O3—C3—C4 | 119.2 (3) | O1—C7—O2 | 122.6 (3) |
C2—C3—C4 | 121.0 (3) | O1—C7—C1 | 113.5 (3) |
O4—C4—C3 | 117.4 (3) | O2—C7—C1 | 123.8 (3) |
O4—C4—C5 | 123.2 (3) | | |
| | | |
O1—C7—C1—C2 | 2.7 (5) | O5—C5—C4—C3 | −178.9 (3) |
O1—C7—C1—C6 | 178.6 (3) | O5—C5—C6—C1 | 177.2 (3) |
O2—C7—C1—C2 | −175.3 (4) | C1—C2—C3—C4 | −1.9 (6) |
O2—C7—C1—C6 | 0.2 (6) | C1—C6—C5—C4 | −1.5 (6) |
O3—C3—C2—C1 | −179.0 (3) | C2—C1—C6—C5 | 1.4 (6) |
O3—C3—C4—O4 | −0.2 (5) | C2—C3—C4—C5 | 1.8 (6) |
O3—C3—C4—C5 | 179.0 (3) | C3—C2—C1—C6 | 0.3 (6) |
O4—C4—C3—C2 | −177.3 (3) | C3—C2—C1—C7 | 175.7 (4) |
O4—C4—C5—O5 | 0.9 (5) | C3—C4—C5—C6 | −0.1 (6) |
O4—C4—C5—C6 | 178.9 (4) | C5—C6—C1—C7 | −174.2 (4) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3···O4 | 0.850 | 2.328 | 2.692 (8) | 106.3 |
O4—H4···O5 | 0.945 | 2.306 | 2.752 (8) | 108.9 |
O3—H3···O6i | 0.850 | 1.949 | 2.770 (4) | 161.6 |
O4—H4···O5ii | 0.945 | 1.907 | 2.767 (8) | 150.0 |
O5—H5···O2iii | 0.851 | 1.878 | 2.729 (4) | 177.7 |
O6—H7···O4ii | 0.820 | 2.182 | 2.977 (4) | 163.8 |
O6—H8···O3iv | 0.812 | 1.941 | 2.747 (4) | 170.9 |
O1—H1···O6iii | 0.830 | 1.859 | 2.686 (4) | 174.2 |
Symmetry codes: (i) −x+1/2, y−1, −z+1/2; (ii) −x+1/2, y, −z+1/2; (iii) −x+1, −y+1, −z+1; (iv) x+1/2, −y, z−1/2. |
Gallic acid, 3,4,5-trihydroxybenzoic acid, is a naturally occurring plant phenol which has antitumor and anti-oxidative activity. It induces apotosis in the human myelogenenous leukemic cell line (Sakaguchi et al., 1999; Satoh & Sakagami, 1997). Therefore the determination of its crystal structure is important for the structural clarification of its biological function. For this reason, we intended to analyse its crystal structure. Recently, this was determined in a monohydrate form by Jiang et al. (2000). We have mow determined its structure as a different monohydrated form, (I).
The molecular structure of (I) is essentially planar as shown in Fig. 1. In the molecule, all the H atoms of the three hydroxyl groups are oriented in the same direction around the ring, forming two intramolecular hydrogen bonds between a pair of hydroxyl groups at positions 3 and 4, and at positions 4 and 5. The hydroxyl groups at positions 3 and 4 are also linked to the water-O atom and to the hydroxyl-O atom of a neighbouring molecule by a bifurcated hydrogen bond. This hydrogen-bonding scheme is different from that reported by Jiant et al. (2000), in which only one intramolecular hydrogen bond is present, and one of the three H atoms of the hydroxyl groups is oriented in the reverse direction to the others. Furthermore, a hydrogen bond is formed between the carboxyl groups in the previous structure, but this interaction is not present in the structure reported here. All of the possible hydrogen bonds are present as either intra- or intermolecular interactions, as shown in Table 2. The two different crystal structures and hydrogen-bonding schemes observed for gallic acid monohydrate may have a role in the biological function of this compound.