The title compound, [Nb
6Cl
12(H
2O)
6]Cl
2·3C
10H
8N
2, is an example of a `hybrid' inorganic–organic compound, where the inorganic and organic parts do not interact by covalent bonds but are joined by hydrogen bonding. The inorganic part contains a hexanuclear mixed-valence niobium cluster aqua cation [Nb
6(μ-Cl)
12(H
2O)
6]
2+, with the typical {
M6X12} structure, and two Cl
− counter-ions. The organic part consists of two crystallographically independent 2,2′-bipyridine molecules; one is planar and lies on a centre of symmetry, and the other is twisted by 42.1 (5)°. The Nb—Nb, Nb—Cl and Nb—O bond distances are close to those found in other salts of this cation. The inorganic and organic parts are joined together by an extended system of hydrogen bonds. Six of the 12 H atoms of the aqua ligands form hydrogen bonds with the N atoms of the bipyridine molecules, and the other six with Cl
− anions. At the same time, the bipyridine molecules use both N atoms in hydrogen bonding with two cluster cations. Each Cl
− anion forms three Cl
H—O bonds with the three cluster cations. The resulting three-dimensional framework shows a non-trivial example of a (12,3,2,2) connected net. The disposition and relative orientation of the cluster cations and the geometric requirements of the hydrogen-bonds dictate the conformations of the bipyridine molecules.
Supporting information
CCDC reference: 296545
Key indicators
- Single-crystal X-ray study
- T = 292 K
- Mean (C-C) = 0.009 Å
- R factor = 0.037
- wR factor = 0.094
- Data-to-parameter ratio = 19.0
checkCIF/PLATON results
No syntax errors found
Alert level C
PLAT042_ALERT_1_C Calc. and Rep. MoietyFormula Strings Differ .... ?
PLAT250_ALERT_2_C Large U3/U1 Ratio for Average U(i,j) Tensor .... 2.48
PLAT342_ALERT_3_C Low Bond Precision on C-C bonds (x 1000) Ang ... 9
PLAT764_ALERT_4_C Overcomplete CIF Bond List Detected (Rep/Expd) . 1.15 Ratio
0 ALERT level A = In general: serious problem
0 ALERT level B = Potentially serious problem
4 ALERT level C = Check and explain
0 ALERT level G = General alerts; check
1 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
1 ALERT type 2 Indicator that the structure model may be wrong or deficient
1 ALERT type 3 Indicator that the structure quality may be low
1 ALERT type 4 Improvement, methodology, query or suggestion
An aqueous solution (10 ml) of K4Nb6Cl18 (50 mg, 0.037 mmol) was mixed with a solution of bpy (34.7 mg, 0.222 mmol) in ethanol (3 ml). The mixture was boiled for 30 min, and then left at room temperature. After one week, a dark-green solid, (I), was obtained. This was decanted, washed with ethanol and dried in air (yield 18.7 mg, 31.0%).
C-bound H atoms were positioned geometrically and refined as riding, with C—H = 0.93 Å and Uiso(H) = 1.2Ueq(C). The H atoms of the coordinated water molecules were located in a difference electron-density map and refined with Uiso(H) fixed at 0.05 Å−2 and O—H bonds restrained to 0.82 (2) Å. The highest residual peak of 1.27 e Å−3 is situated 0.51 Å from atom Cl7.
Data collection: APEX2 (Bruker, 2005); cell refinement: APEX2; data reduction: APEX2; program(s) used to solve structure: SHELXTL (Bruker, 2005); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: local programs.
Hexaaquadodeca-µ-chloro-hexaniobium(II,III) dichloride 2,2'-bipyridine trisolvate
top
Crystal data top
[Nb6Cl12(H2O)6]Cl2·3C10H8N2 | Z = 1 |
Mr = 1630.41 | F(000) = 790 |
Triclinic, P1 | Dx = 2.163 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 10.1546 (12) Å | Cell parameters from 3551 reflections |
b = 11.2503 (15) Å | θ = 2.5–28.2° |
c = 12.2583 (11) Å | µ = 2.12 mm−1 |
α = 74.822 (4)° | T = 292 K |
β = 74.551 (4)° | Prism, dark green |
γ = 70.901 (4)° | 0.09 × 0.03 × 0.01 mm |
V = 1251.8 (3) Å3 | |
Data collection top
Bruker X8 APEX CCD area-detector diffractometer | 5658 independent reflections |
Radiation source: fine-focus sealed tube | 4317 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.033 |
Detector resolution: 25 pixels mm-1 | θmax = 27.5°, θmin = 1.8° |
ω and ϕ scans | h = −13→13 |
Absorption correction: empirical (using intensity measurements) (SADABS; Bruker, 2005) | k = −14→14 |
Tmin = 0.871, Tmax = 0.980 | l = −11→15 |
12802 measured reflections | |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.037 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.094 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | w = 1/[σ2(Fo2) + (0.0401P)2 + 1.4105P] where P = (Fo2 + 2Fc2)/3 |
5658 reflections | (Δ/σ)max < 0.001 |
298 parameters | Δρmax = 1.27 e Å−3 |
6 restraints | Δρmin = −0.67 e Å−3 |
Crystal data top
[Nb6Cl12(H2O)6]Cl2·3C10H8N2 | γ = 70.901 (4)° |
Mr = 1630.41 | V = 1251.8 (3) Å3 |
Triclinic, P1 | Z = 1 |
a = 10.1546 (12) Å | Mo Kα radiation |
b = 11.2503 (15) Å | µ = 2.12 mm−1 |
c = 12.2583 (11) Å | T = 292 K |
α = 74.822 (4)° | 0.09 × 0.03 × 0.01 mm |
β = 74.551 (4)° | |
Data collection top
Bruker X8 APEX CCD area-detector diffractometer | 5658 independent reflections |
Absorption correction: empirical (using intensity measurements) (SADABS; Bruker, 2005) | 4317 reflections with I > 2σ(I) |
Tmin = 0.871, Tmax = 0.980 | Rint = 0.033 |
12802 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.037 | 6 restraints |
wR(F2) = 0.094 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | Δρmax = 1.27 e Å−3 |
5658 reflections | Δρmin = −0.67 e Å−3 |
298 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
Nb1 | 0.05951 (4) | 0.05788 (4) | −0.17540 (3) | 0.01997 (11) | |
Nb2 | −0.12641 (4) | −0.09688 (4) | −0.02789 (3) | 0.02059 (11) | |
Nb3 | −0.16910 (4) | 0.16257 (4) | 0.00454 (3) | 0.02023 (11) | |
Cl1 | −0.07844 (13) | −0.04608 (12) | −0.24031 (9) | 0.0284 (3) | |
Cl2 | 0.21978 (13) | 0.18172 (12) | −0.17345 (9) | 0.0287 (3) | |
Cl3 | −0.13104 (13) | 0.25848 (12) | −0.20287 (9) | 0.0292 (3) | |
Cl4 | −0.34951 (12) | 0.07792 (12) | −0.02471 (10) | 0.0281 (3) | |
Cl5 | 0.26992 (13) | −0.12353 (12) | −0.21349 (9) | 0.0291 (3) | |
Cl6 | 0.05053 (13) | −0.30764 (11) | −0.03363 (10) | 0.0296 (3) | |
Cl7 | 0.60972 (12) | 0.58291 (11) | 0.10687 (10) | 0.0271 (3) | |
O1 | 0.1228 (4) | 0.1230 (4) | −0.3636 (3) | 0.0325 (9) | |
H11 | 0.166 (6) | 0.073 (4) | −0.405 (4) | 0.050* | |
H12 | 0.081 (6) | 0.193 (3) | −0.398 (4) | 0.050* | |
O2 | −0.2633 (4) | −0.1996 (4) | −0.0585 (3) | 0.0365 (9) | |
H21 | −0.293 (6) | −0.256 (4) | −0.007 (4) | 0.050* | |
H22 | −0.273 (6) | −0.199 (6) | −0.124 (3) | 0.050* | |
O3 | −0.3507 (4) | 0.3380 (4) | 0.0101 (3) | 0.0358 (9) | |
H31 | −0.419 (4) | 0.352 (6) | −0.020 (5) | 0.050* | |
H32 | −0.366 (6) | 0.409 (3) | 0.025 (5) | 0.050* | |
C1 | 0.0201 (6) | 0.5308 (5) | 0.5375 (4) | 0.0294 (11) | |
C2 | 0.0892 (7) | 0.4576 (5) | 0.6265 (5) | 0.0450 (15) | |
H2A | 0.1125 | 0.3686 | 0.6391 | 0.054* | |
C3 | 0.1234 (7) | 0.5165 (6) | 0.6966 (5) | 0.0495 (17) | |
H3A | 0.1711 | 0.4683 | 0.7557 | 0.059* | |
C4 | 0.0850 (7) | 0.6487 (6) | 0.6768 (4) | 0.0459 (16) | |
H4A | 0.1032 | 0.6918 | 0.7239 | 0.055* | |
C5 | 0.0192 (6) | 0.7150 (5) | 0.5852 (4) | 0.0372 (13) | |
H5A | −0.0041 | 0.8041 | 0.5707 | 0.045* | |
C6 | 0.6446 (5) | 0.8338 (5) | 0.6499 (4) | 0.0314 (12) | |
C7 | 0.6180 (6) | 0.7851 (6) | 0.5686 (5) | 0.0410 (14) | |
H7A | 0.5992 | 0.8370 | 0.4986 | 0.049* | |
C8 | 0.6200 (7) | 0.6566 (6) | 0.5932 (5) | 0.0501 (16) | |
H8A | 0.6014 | 0.6214 | 0.5401 | 0.060* | |
C9 | 0.6496 (7) | 0.5826 (6) | 0.6966 (5) | 0.0496 (16) | |
H9A | 0.6525 | 0.4963 | 0.7145 | 0.059* | |
C10 | 0.6748 (7) | 0.6381 (7) | 0.7730 (5) | 0.0541 (17) | |
H10A | 0.6950 | 0.5872 | 0.8429 | 0.065* | |
C11 | 0.6425 (5) | 0.9693 (5) | 0.6300 (4) | 0.0314 (12) | |
C12 | 0.5788 (6) | 1.0426 (5) | 0.7150 (4) | 0.0346 (12) | |
H12A | 0.5339 | 1.0073 | 0.7871 | 0.041* | |
C13 | 0.5828 (6) | 1.1682 (6) | 0.6915 (5) | 0.0432 (15) | |
H13A | 0.5403 | 1.2185 | 0.7476 | 0.052* | |
C14 | 0.6501 (7) | 1.2188 (6) | 0.5847 (5) | 0.0443 (15) | |
H14A | 0.6558 | 1.3028 | 0.5673 | 0.053* | |
C15 | 0.7089 (7) | 1.1402 (6) | 0.5040 (5) | 0.0437 (15) | |
H15A | 0.7531 | 1.1746 | 0.4313 | 0.052* | |
N1 | 0.7066 (5) | 1.0187 (4) | 0.5234 (3) | 0.0359 (11) | |
N2 | 0.6722 (5) | 0.7617 (5) | 0.7525 (4) | 0.0414 (12) | |
N3 | −0.0133 (5) | 0.6592 (4) | 0.5160 (3) | 0.0311 (10) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Nb1 | 0.0216 (2) | 0.0203 (2) | 0.01567 (19) | −0.00330 (17) | −0.00408 (15) | −0.00234 (16) |
Nb2 | 0.0217 (2) | 0.0208 (2) | 0.0192 (2) | −0.00501 (18) | −0.00606 (16) | −0.00265 (16) |
Nb3 | 0.0207 (2) | 0.0193 (2) | 0.0183 (2) | −0.00151 (17) | −0.00530 (16) | −0.00344 (16) |
Cl1 | 0.0334 (7) | 0.0329 (7) | 0.0213 (5) | −0.0087 (6) | −0.0094 (5) | −0.0056 (5) |
Cl2 | 0.0303 (6) | 0.0316 (7) | 0.0239 (5) | −0.0135 (5) | −0.0042 (5) | 0.0004 (5) |
Cl3 | 0.0327 (7) | 0.0246 (6) | 0.0221 (5) | 0.0001 (5) | −0.0073 (5) | 0.0010 (5) |
Cl4 | 0.0217 (6) | 0.0306 (7) | 0.0318 (6) | −0.0036 (5) | −0.0092 (5) | −0.0061 (5) |
Cl5 | 0.0276 (6) | 0.0309 (7) | 0.0210 (5) | 0.0003 (5) | −0.0015 (5) | −0.0060 (5) |
Cl6 | 0.0329 (7) | 0.0225 (6) | 0.0343 (6) | −0.0033 (5) | −0.0112 (5) | −0.0079 (5) |
Cl7 | 0.0272 (6) | 0.0224 (6) | 0.0354 (6) | −0.0065 (5) | −0.0115 (5) | −0.0072 (5) |
O1 | 0.042 (2) | 0.029 (2) | 0.0191 (17) | −0.0037 (18) | −0.0038 (15) | −0.0014 (15) |
O2 | 0.046 (2) | 0.039 (2) | 0.033 (2) | −0.0216 (19) | −0.0153 (19) | −0.0011 (18) |
O3 | 0.032 (2) | 0.028 (2) | 0.046 (2) | 0.0059 (18) | −0.0176 (17) | −0.0123 (18) |
C1 | 0.037 (3) | 0.028 (3) | 0.023 (2) | −0.010 (2) | −0.006 (2) | −0.001 (2) |
C2 | 0.078 (5) | 0.027 (3) | 0.041 (3) | −0.017 (3) | −0.033 (3) | 0.002 (2) |
C3 | 0.079 (5) | 0.036 (4) | 0.043 (3) | −0.019 (3) | −0.042 (3) | 0.009 (3) |
C4 | 0.076 (5) | 0.041 (4) | 0.032 (3) | −0.021 (3) | −0.024 (3) | −0.007 (3) |
C5 | 0.053 (4) | 0.026 (3) | 0.035 (3) | −0.008 (3) | −0.015 (3) | −0.006 (2) |
C6 | 0.027 (3) | 0.040 (3) | 0.025 (2) | −0.008 (2) | −0.002 (2) | −0.007 (2) |
C7 | 0.037 (3) | 0.050 (4) | 0.038 (3) | −0.017 (3) | −0.008 (2) | −0.004 (3) |
C8 | 0.051 (4) | 0.053 (4) | 0.051 (4) | −0.016 (3) | −0.012 (3) | −0.014 (3) |
C9 | 0.057 (4) | 0.033 (3) | 0.059 (4) | −0.016 (3) | −0.017 (3) | 0.000 (3) |
C10 | 0.067 (5) | 0.054 (4) | 0.039 (3) | −0.021 (4) | −0.013 (3) | 0.003 (3) |
C11 | 0.027 (3) | 0.035 (3) | 0.027 (2) | −0.002 (2) | −0.007 (2) | −0.003 (2) |
C12 | 0.034 (3) | 0.040 (3) | 0.029 (3) | −0.006 (3) | −0.008 (2) | −0.009 (2) |
C13 | 0.039 (3) | 0.048 (4) | 0.045 (3) | 0.002 (3) | −0.015 (3) | −0.024 (3) |
C14 | 0.064 (4) | 0.035 (3) | 0.039 (3) | −0.018 (3) | −0.013 (3) | −0.007 (3) |
C15 | 0.056 (4) | 0.046 (4) | 0.031 (3) | −0.021 (3) | −0.005 (3) | −0.005 (3) |
N1 | 0.043 (3) | 0.036 (3) | 0.029 (2) | −0.012 (2) | −0.006 (2) | −0.008 (2) |
N2 | 0.048 (3) | 0.043 (3) | 0.032 (2) | −0.013 (2) | −0.013 (2) | 0.001 (2) |
N3 | 0.040 (3) | 0.028 (2) | 0.028 (2) | −0.010 (2) | −0.0113 (19) | −0.0035 (18) |
Geometric parameters (Å, º) top
Nb1—Nb2i | 2.9213 (6) | C1—C1ii | 1.486 (10) |
Nb1—Nb2 | 2.9239 (6) | C1—C2 | 1.386 (7) |
Nb1—Nb3 | 2.9128 (6) | C1—N3 | 1.341 (6) |
Nb1—Nb3i | 2.9141 (6) | C2—H2A | 0.9300 |
Nb1—Cl1 | 2.4731 (13) | C2—C3 | 1.380 (8) |
Nb1—Cl2 | 2.4724 (13) | C3—H3A | 0.9300 |
Nb1—Cl3 | 2.4581 (13) | C3—C4 | 1.380 (8) |
Nb1—Cl5 | 2.4622 (12) | C4—H4A | 0.9300 |
Nb1—O1 | 2.214 (3) | C4—C5 | 1.378 (7) |
Nb2—Nb1i | 2.9213 (6) | C5—H5A | 0.9300 |
Nb2—Nb3i | 2.9204 (7) | C5—N3 | 1.337 (6) |
Nb2—Nb3 | 2.9246 (7) | C6—C7 | 1.375 (7) |
Nb2—Cl1 | 2.4641 (12) | C6—C11 | 1.474 (7) |
Nb2—Cl2i | 2.4522 (12) | C6—N2 | 1.350 (6) |
Nb2—Cl4 | 2.4656 (13) | C7—H7A | 0.9300 |
Nb2—Cl6 | 2.4673 (13) | C7—C8 | 1.392 (8) |
Nb2—O2 | 2.228 (4) | C8—H8A | 0.9300 |
Nb3—Nb1i | 2.9141 (6) | C8—C9 | 1.370 (8) |
Nb3—Nb2i | 2.9204 (7) | C9—H9A | 0.9300 |
Nb3—Cl3 | 2.4679 (12) | C9—C10 | 1.368 (9) |
Nb3—Cl4 | 2.4621 (13) | C10—H10A | 0.9300 |
Nb3—Cl5i | 2.4719 (11) | C10—N2 | 1.339 (8) |
Nb3—Cl6i | 2.4619 (13) | C11—C12 | 1.388 (7) |
Nb3—O3 | 2.219 (4) | C11—N1 | 1.358 (6) |
Cl2—Nb2i | 2.4522 (12) | C12—H12A | 0.9300 |
Cl5—Nb3i | 2.4719 (11) | C12—C13 | 1.379 (8) |
Cl6—Nb3i | 2.4619 (13) | C13—H13A | 0.9300 |
O1—H11 | 0.80 (4) | C13—C14 | 1.376 (8) |
O1—H12 | 0.83 (4) | C14—H14A | 0.9300 |
O2—H21 | 0.84 (5) | C14—C15 | 1.383 (8) |
O2—H22 | 0.83 (4) | C15—H15A | 0.9300 |
O3—H31 | 0.82 (5) | C15—N1 | 1.332 (7) |
O3—H32 | 0.82 (4) | | |
| | | |
Nb2i—Nb1—Nb2 | 90.354 (17) | Cl4—Nb3—Nb2 | 53.65 (3) |
Nb3—Nb1—Nb2i | 60.075 (15) | Cl4—Nb3—Cl3 | 88.63 (4) |
Nb3i—Nb1—Nb2i | 60.157 (16) | Cl4—Nb3—Cl5i | 88.04 (4) |
Nb3—Nb1—Nb2 | 60.141 (16) | Cl5i—Nb3—Nb1 | 143.65 (3) |
Nb3i—Nb1—Nb2 | 60.031 (16) | Cl5i—Nb3—Nb1i | 53.65 (3) |
Nb3—Nb1—Nb3i | 89.996 (17) | Cl5i—Nb3—Nb2i | 96.02 (3) |
Cl1—Nb1—Nb2i | 143.90 (3) | Cl5i—Nb3—Nb2 | 96.13 (3) |
Cl1—Nb1—Nb2 | 53.54 (3) | Cl6i—Nb3—Nb1 | 95.42 (3) |
Cl1—Nb1—Nb3 | 96.25 (3) | Cl6i—Nb3—Nb1i | 97.23 (3) |
Cl1—Nb1—Nb3i | 96.02 (3) | Cl6i—Nb3—Nb2i | 53.75 (3) |
Cl2—Nb1—Nb2i | 53.30 (3) | Cl6i—Nb3—Nb2 | 144.08 (3) |
Cl2—Nb1—Nb2 | 143.65 (3) | Cl6i—Nb3—Cl3 | 88.24 (4) |
Cl2—Nb1—Nb3 | 96.07 (3) | Cl6i—Nb3—Cl4 | 162.25 (4) |
Cl2—Nb1—Nb3i | 95.92 (3) | Cl6i—Nb3—Cl5i | 89.79 (4) |
Cl2—Nb1—Cl1 | 162.81 (4) | O3—Nb3—Nb1 | 135.15 (10) |
Cl3—Nb1—Nb2i | 96.81 (3) | O3—Nb3—Nb1i | 134.84 (10) |
Cl3—Nb1—Nb2 | 95.73 (3) | O3—Nb3—Nb2i | 134.47 (11) |
Cl3—Nb1—Nb3 | 53.91 (3) | O3—Nb3—Nb2 | 135.17 (11) |
Cl3—Nb1—Nb3i | 143.89 (3) | O3—Nb3—Cl3 | 81.57 (10) |
Cl3—Nb1—Cl1 | 87.99 (4) | O3—Nb3—Cl4 | 81.53 (11) |
Cl3—Nb1—Cl2 | 89.62 (5) | O3—Nb3—Cl5i | 81.20 (10) |
Cl3—Nb1—Cl5 | 162.12 (4) | O3—Nb3—Cl6i | 80.73 (11) |
Cl5—Nb1—Nb2i | 96.43 (3) | Nb2—Cl1—Nb1 | 72.63 (3) |
Cl5—Nb1—Nb2 | 96.15 (3) | Nb2i—Cl2—Nb1 | 72.77 (3) |
Cl5—Nb1—Nb3 | 143.95 (3) | Nb1—Cl3—Nb3 | 72.50 (3) |
Cl5—Nb1—Nb3i | 53.95 (3) | Nb3—Cl4—Nb2 | 72.81 (4) |
Cl5—Nb1—Cl1 | 88.38 (4) | Nb1—Cl5—Nb3i | 72.40 (3) |
Cl5—Nb1—Cl2 | 88.70 (5) | Nb3i—Cl6—Nb2 | 72.66 (4) |
O1—Nb1—Nb2i | 134.23 (11) | Nb1—O1—H11 | 121 (4) |
O1—Nb1—Nb2 | 135.41 (11) | Nb1—O1—H12 | 122 (4) |
O1—Nb1—Nb3 | 134.36 (10) | H11—O1—H12 | 113 (6) |
O1—Nb1—Nb3i | 135.64 (10) | Nb2—O2—H21 | 122 (4) |
O1—Nb1—Cl1 | 81.88 (11) | Nb2—O2—H22 | 123 (4) |
O1—Nb1—Cl2 | 80.94 (11) | H21—O2—H22 | 113 (6) |
O1—Nb1—Cl3 | 80.47 (10) | Nb3—O3—H31 | 123 (4) |
O1—Nb1—Cl5 | 81.69 (10) | Nb3—O3—H32 | 136 (4) |
Nb1i—Nb2—Nb1 | 89.646 (17) | H31—O3—H32 | 100 (6) |
Nb1i—Nb2—Nb3 | 59.800 (14) | C2—C1—C1ii | 120.9 (6) |
Nb1—Nb2—Nb3 | 59.742 (15) | N3—C1—C1ii | 117.6 (5) |
Nb3i—Nb2—Nb1i | 59.819 (14) | N3—C1—C2 | 121.5 (5) |
Nb3i—Nb2—Nb1 | 59.818 (15) | C1—C2—H2A | 120.0 |
Nb3i—Nb2—Nb3 | 89.642 (17) | C3—C2—C1 | 120.1 (5) |
Cl1—Nb2—Nb1i | 143.47 (3) | C3—C2—H2A | 120.0 |
Cl1—Nb2—Nb1 | 53.83 (3) | C2—C3—H3A | 120.8 |
Cl1—Nb2—Nb3i | 96.07 (3) | C4—C3—C2 | 118.5 (5) |
Cl1—Nb2—Nb3 | 96.15 (3) | C4—C3—H3A | 120.8 |
Cl1—Nb2—Cl4 | 89.52 (4) | C3—C4—H4A | 120.9 |
Cl1—Nb2—Cl6 | 89.89 (4) | C5—C4—C3 | 118.2 (5) |
Cl2i—Nb2—Nb1i | 53.94 (3) | C5—C4—H4A | 120.9 |
Cl2i—Nb2—Nb1 | 143.58 (3) | C4—C5—H5A | 118.0 |
Cl2i—Nb2—Nb3i | 96.33 (3) | N3—C5—C4 | 124.0 (5) |
Cl2i—Nb2—Nb3 | 96.11 (3) | N3—C5—H5A | 118.0 |
Cl2i—Nb2—Cl1 | 162.59 (5) | C7—C6—C11 | 121.4 (5) |
Cl2i—Nb2—Cl4 | 87.86 (4) | N2—C6—C7 | 122.5 (5) |
Cl2i—Nb2—Cl6 | 87.68 (4) | N2—C6—C11 | 116.1 (5) |
Cl4—Nb2—Nb1i | 95.39 (3) | C6—C7—H7A | 120.7 |
Cl4—Nb2—Nb1 | 96.38 (3) | C6—C7—C8 | 118.6 (5) |
Cl4—Nb2—Nb3i | 143.17 (3) | C8—C7—H7A | 120.7 |
Cl4—Nb2—Nb3 | 53.54 (3) | C7—C8—H8A | 120.4 |
Cl4—Nb2—Cl6 | 163.14 (5) | C9—C8—C7 | 119.2 (6) |
Cl6—Nb2—Nb1i | 95.09 (3) | C9—C8—H8A | 120.4 |
Cl6—Nb2—Nb1 | 96.85 (3) | C8—C9—H9A | 120.7 |
Cl6—Nb2—Nb3i | 53.58 (3) | C10—C9—C8 | 118.7 (6) |
Cl6—Nb2—Nb3 | 143.20 (4) | C10—C9—H9A | 120.7 |
O2—Nb2—Nb1i | 135.36 (9) | C9—C10—H10A | 118.2 |
O2—Nb2—Nb1 | 134.99 (9) | N2—C10—C9 | 123.6 (6) |
O2—Nb2—Nb3i | 135.54 (11) | N2—C10—H10A | 118.2 |
O2—Nb2—Nb3 | 134.82 (11) | C12—C11—C6 | 122.1 (5) |
O2—Nb2—Cl1 | 81.17 (10) | N1—C11—C6 | 116.1 (4) |
O2—Nb2—Cl2i | 81.42 (10) | N1—C11—C12 | 121.8 (5) |
O2—Nb2—Cl4 | 81.29 (11) | C11—C12—H12A | 120.4 |
O2—Nb2—Cl6 | 81.97 (11) | C13—C12—C11 | 119.2 (5) |
Nb1—Nb3—Nb1i | 90.004 (17) | C13—C12—H12A | 120.4 |
Nb1—Nb3—Nb2i | 60.106 (15) | C12—C13—H13A | 120.2 |
Nb1i—Nb3—Nb2i | 60.151 (15) | C14—C13—C12 | 119.6 (5) |
Nb1—Nb3—Nb2 | 60.117 (15) | C14—C13—H13A | 120.2 |
Nb1i—Nb3—Nb2 | 60.043 (16) | C13—C14—H14A | 121.2 |
Nb2i—Nb3—Nb2 | 90.358 (17) | C13—C14—C15 | 117.6 (6) |
Cl3—Nb3—Nb1 | 53.59 (3) | C15—C14—H14A | 121.2 |
Cl3—Nb3—Nb1i | 143.59 (3) | C14—C15—H15A | 117.8 |
Cl3—Nb3—Nb2i | 96.61 (3) | N1—C15—C14 | 124.5 (5) |
Cl3—Nb3—Nb2 | 95.50 (3) | N1—C15—H15A | 117.8 |
Cl3—Nb3—Cl5i | 162.75 (4) | C15—N1—C11 | 117.3 (5) |
Cl4—Nb3—Nb1 | 96.75 (3) | C10—N2—C6 | 117.4 (5) |
Cl4—Nb3—Nb1i | 95.65 (3) | C5—N3—C1 | 117.8 (4) |
Cl4—Nb3—Nb2i | 144.00 (3) | | |
| | | |
N3—C1—C1ii—N3ii | 180.000 (1) | N1—C11—C6—N2 | 137.9 (5) |
Symmetry codes: (i) −x, −y, −z; (ii) −x, −y+1, −z+1. |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H11···N1iii | 0.80 (4) | 1.94 (5) | 2.720 (5) | 167 (6) |
O1—H12···N3iv | 0.83 (4) | 1.96 (2) | 2.768 (5) | 165 (6) |
O2—H21···Cl7v | 0.84 (5) | 2.31 (5) | 3.136 (4) | 170 (6) |
O2—H22···N2vi | 0.83 (4) | 1.93 (3) | 2.740 (6) | 162 (6) |
O3—H31···Cl7iv | 0.82 (5) | 2.27 (5) | 3.095 (4) | 172 (6) |
O3—H32···Cl7vii | 0.82 (4) | 2.34 (2) | 3.145 (4) | 167 (6) |
Symmetry codes: (iii) −x+1, −y+1, −z; (iv) −x, −y+1, −z; (v) x−1, y−1, z; (vi) x−1, y−1, z−1; (vii) x−1, y, z. |
Experimental details
Crystal data |
Chemical formula | [Nb6Cl12(H2O)6]Cl2·3C10H8N2 |
Mr | 1630.41 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 292 |
a, b, c (Å) | 10.1546 (12), 11.2503 (15), 12.2583 (11) |
α, β, γ (°) | 74.822 (4), 74.551 (4), 70.901 (4) |
V (Å3) | 1251.8 (3) |
Z | 1 |
Radiation type | Mo Kα |
µ (mm−1) | 2.12 |
Crystal size (mm) | 0.09 × 0.03 × 0.01 |
|
Data collection |
Diffractometer | Bruker X8 APEX CCD area-detector diffractometer |
Absorption correction | Empirical (using intensity measurements) (SADABS; Bruker, 2005) |
Tmin, Tmax | 0.871, 0.980 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 12802, 5658, 4317 |
Rint | 0.033 |
(sin θ/λ)max (Å−1) | 0.650 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.037, 0.094, 1.02 |
No. of reflections | 5658 |
No. of parameters | 298 |
No. of restraints | 6 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 1.27, −0.67 |
Selected geometric parameters (Å, º) topNb1—Nb2i | 2.9213 (6) | Nb2—Cl1 | 2.4641 (12) |
Nb1—Nb2 | 2.9239 (6) | Nb2—Cl2i | 2.4522 (12) |
Nb1—Nb3 | 2.9128 (6) | Nb2—Cl4 | 2.4656 (13) |
Nb1—Nb3i | 2.9141 (6) | Nb2—Cl6 | 2.4673 (13) |
Nb1—Cl1 | 2.4731 (13) | Nb2—O2 | 2.228 (4) |
Nb1—Cl2 | 2.4724 (13) | Nb3—Cl3 | 2.4679 (12) |
Nb1—Cl3 | 2.4581 (13) | Nb3—Cl4 | 2.4621 (13) |
Nb1—Cl5 | 2.4622 (12) | Nb3—Cl5i | 2.4719 (11) |
Nb1—O1 | 2.214 (3) | Nb3—Cl6i | 2.4619 (13) |
Nb2—Nb3i | 2.9204 (7) | Nb3—O3 | 2.219 (4) |
Nb2—Nb3 | 2.9246 (7) | | |
| | | |
Cl1—Nb1—Nb2i | 143.90 (3) | Cl6—Nb2—Nb1 | 96.85 (3) |
Cl1—Nb1—Nb2 | 53.54 (3) | Cl6—Nb2—Nb3i | 53.58 (3) |
Cl1—Nb1—Nb3 | 96.25 (3) | Cl6—Nb2—Nb3 | 143.20 (4) |
Cl1—Nb1—Nb3i | 96.02 (3) | O2—Nb2—Nb1i | 135.36 (9) |
Cl2—Nb1—Nb2i | 53.30 (3) | O2—Nb2—Nb1 | 134.99 (9) |
Cl2—Nb1—Nb2 | 143.65 (3) | O2—Nb2—Nb3i | 135.54 (11) |
Cl2—Nb1—Nb3 | 96.07 (3) | O2—Nb2—Nb3 | 134.82 (11) |
Cl2—Nb1—Nb3i | 95.92 (3) | Cl3—Nb3—Nb1 | 53.59 (3) |
Cl3—Nb1—Nb2i | 96.81 (3) | Cl3—Nb3—Nb1i | 143.59 (3) |
Cl3—Nb1—Nb2 | 95.73 (3) | Cl3—Nb3—Nb2i | 96.61 (3) |
Cl3—Nb1—Nb3 | 53.91 (3) | Cl3—Nb3—Nb2 | 95.50 (3) |
Cl3—Nb1—Nb3i | 143.89 (3) | Cl4—Nb3—Nb1 | 96.75 (3) |
Cl5—Nb1—Nb2i | 96.43 (3) | Cl4—Nb3—Nb1i | 95.65 (3) |
Cl5—Nb1—Nb2 | 96.15 (3) | Cl4—Nb3—Nb2i | 144.00 (3) |
Cl5—Nb1—Nb3 | 143.95 (3) | Cl4—Nb3—Nb2 | 53.65 (3) |
Cl5—Nb1—Nb3i | 53.95 (3) | Cl5i—Nb3—Nb1 | 143.65 (3) |
O1—Nb1—Nb2i | 134.23 (11) | Cl5i—Nb3—Nb1i | 53.65 (3) |
O1—Nb1—Nb2 | 135.41 (11) | Cl5i—Nb3—Nb2i | 96.02 (3) |
O1—Nb1—Nb3 | 134.36 (10) | Cl5i—Nb3—Nb2 | 96.13 (3) |
O1—Nb1—Nb3i | 135.64 (10) | Cl6i—Nb3—Nb1 | 95.42 (3) |
Cl1—Nb2—Nb1i | 143.47 (3) | Cl6i—Nb3—Nb1i | 97.23 (3) |
Cl1—Nb2—Nb1 | 53.83 (3) | Cl6i—Nb3—Nb2i | 53.75 (3) |
Cl1—Nb2—Nb3i | 96.07 (3) | Cl6i—Nb3—Nb2 | 144.08 (3) |
Cl1—Nb2—Nb3 | 96.15 (3) | O3—Nb3—Nb1 | 135.15 (10) |
Cl2i—Nb2—Nb1i | 53.94 (3) | O3—Nb3—Nb1i | 134.84 (10) |
Cl2i—Nb2—Nb1 | 143.58 (3) | O3—Nb3—Nb2i | 134.47 (11) |
Cl2i—Nb2—Nb3i | 96.33 (3) | O3—Nb3—Nb2 | 135.17 (11) |
Cl2i—Nb2—Nb3 | 96.11 (3) | Nb2—Cl1—Nb1 | 72.63 (3) |
Cl4—Nb2—Nb1i | 95.39 (3) | Nb2i—Cl2—Nb1 | 72.77 (3) |
Cl4—Nb2—Nb1 | 96.38 (3) | Nb1—Cl3—Nb3 | 72.50 (3) |
Cl4—Nb2—Nb3i | 143.17 (3) | Nb3—Cl4—Nb2 | 72.81 (4) |
Cl4—Nb2—Nb3 | 53.54 (3) | Nb1—Cl5—Nb3i | 72.40 (3) |
Cl6—Nb2—Nb1i | 95.09 (3) | Nb3i—Cl6—Nb2 | 72.66 (4) |
| | | |
N3—C1—C1ii—N3ii | 180.000 (1) | N1—C11—C6—N2 | 137.9 (5) |
Symmetry codes: (i) −x, −y, −z; (ii) −x, −y+1, −z+1. |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H11···N1iii | 0.80 (4) | 1.94 (5) | 2.720 (5) | 167 (6) |
O1—H12···N3iv | 0.83 (4) | 1.96 (2) | 2.768 (5) | 165 (6) |
O2—H21···Cl7v | 0.84 (5) | 2.31 (5) | 3.136 (4) | 170 (6) |
O2—H22···N2vi | 0.83 (4) | 1.93 (3) | 2.740 (6) | 162 (6) |
O3—H31···Cl7iv | 0.82 (5) | 2.27 (5) | 3.095 (4) | 172 (6) |
O3—H32···Cl7vii | 0.82 (4) | 2.34 (2) | 3.145 (4) | 167 (6) |
Symmetry codes: (iii) −x+1, −y+1, −z; (iv) −x, −y+1, −z; (v) x−1, y−1, z; (vi) x−1, y−1, z−1; (vii) x−1, y, z. |
The chemistry of niobium clusters has developed rapidly in recent years (Brnicevic, Kojic-Prodic et al., 1995; Brnicevic, Planinic et al., 1995; Brnicevic, 1999; Perrin, 1999; Prokopuk & Shriver, 1999). Facile procedures for the preparation of substituted moieties with an Nb6Cl12 cluster core enable new compounds with various apical ligands to be obtained.
The title compound, (I), is an example of a `hybrid' inorganic–organic compound, where the inorganic and organic parts do not interact by covalent bonds but are joined by hydrogen bonds. The inorganic part contains a hexanuclear mixed-valence niobium cluster aqua cation, [Nb6(µ-Cl)12(H2O)6]2+ (Fig. 1), and two Cl− counterions. The organic part consists of two crystallographically independent 2,2'-bipyridine molecules (Fig. 2).
The cluster core in the cation has the typical {M6X12} structure of an octahedron of metal atoms with halogen bridges on each edge. In addition, there are six coordinated terminal water molecules, one per Nb atom. The whole cation lies at the centre of symmetry (Wyckoff position 1a). The Nb—Nb, Nb—Cl and Nb—O bond distances (Table 1) are quite close to those found in other salts of this cation, namely [Nb6Cl12(H2O)6](CH3O)2·8H2O (Brnicevic, Planinic et al., 1995) and [Nb6Cl12(H2O)6](CH3O)2·0.25CH3OH·6H2O (Brnicevic, Kojic-Prodic et al., 1995).
The two crystallographically independent 2,2'-bipyridine molecules possess different conformations: one of them is planar and located on the inversion centre, while the other is twisted by 42.1 (5)° and lies in a general position. The reason for this difference can be found in an analysis of the hydrogen bonding in the crystal, where all possible hydrogen bonds are realised (Table 2). Six of the 12 H atoms of the H2O ligands form hydrogen bonds with the N atoms of the bipyridine molecules and the remaining six with Cl− anions. At the same time, the bipyridine molecules use both N atoms in hydrogen bonds with two cluster cations. Each Cl− anion forms three Cl···H—O hydrogen bonds with three cluster cations.
In the crystal packing one can select `inorganic' layers of clusters and Cl− anions joined together by hydrogen bonds (Fig. 3). These layers lie in the (001) plane. The bipyridine molecules join the layers by means of N···H—O hydrogen bonds (Fig. 4). The centrosymmetric planar bipyridine molecule joins clusters in the (0,1,0) and (0,0,1) positions, with a cluster–cluster distance of 14.304 Å. The twisted molecule joins clusters in the (0,0,0) and (0,0,1) positions with a shorter cluster–cluster distance of 12.258 Å. This difference between the cluster–cluster distances results from the fact that the centre of the planar bipyridine molecule lies exactly on the line between the centres of the cations, while the centre of the twisted molecule is located away from this line (centre–centre–centre angle is 114.8°). Taking into account the rigid geometry of the cluster cation, one can state that the positions of the cations and their relative orientations, along with the hydrogen-bonding geometry, dictate the conformation of the bipyridine molecules.
The resulting three-dimensional framework shows a non-trivial example of a (12,3,2,2) connected net (O'Keeffe et al., 2000). According to the results of the ADS subprogram of the TOPOS4.0 program set (Blatov et al., 2000) the topology of the hydrogen-bond net can be characterized by the total Schläfli symbol of {43}2{48;622;831;105}{4}2{6}.