The isostructural salts benzene-1,2-diaminium bis(pyridine-2-carboxylate), 0.5C
6H
10N
22+·C
6H
4NO
2−, (1), and 4,5-dimethylbenzene-1,2-diaminium bis(pyridine-2-carboxylate), 0.5C
8H
14N
22+·C
6H
4NO
2−, (2), and the 1:2 benzene-1,2-diamine–benzoic acid cocrystal, 0.5C
6H
8N
2·C
7H
6O
2, (3), are reported. All of the compounds exhibit extensive N—H
O hydrogen bonding that results in interconnected rings. O—H
N hydrogen bonding is observed in (3). Additional π–π and C—H
π interactions are found in each compound. Hirshfeld and fingerprint plot analyses reveal the primary intermolecular interactions and density functional theory was used to calculate their strengths. Salt formation by (1) and (2), and cocrystallization by (3) are rationalized by examining p
Ka differences. The
R22(9) hydrogen-bonding motif is common to each of these structures.
Supporting information
CCDC references: 1896669; 1896668; 1896667
For all structures, data collection: APEX2 (Bruker, 2015); cell refinement: APEX2 (Bruker, 2015); data reduction: SAINT (Bruker, 2015); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015); molecular graphics: PLATON (Spek, 2009) and Mercury (Macrae et al., 2008); software used to prepare material for publication: publCIF (Westrip, 2010).
Benzene-1,2-diaminium bis(pyridine-2-carboxylate) (1)
top
Crystal data top
0.5C6H10N22+·C6H4NO2− | F(000) = 744 |
Mr = 177.18 | Dx = 1.365 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
a = 21.467 (5) Å | Cell parameters from 2197 reflections |
b = 7.675 (2) Å | θ = 2.3–23.1° |
c = 12.837 (3) Å | µ = 0.10 mm−1 |
β = 125.362 (7)° | T = 200 K |
V = 1724.8 (7) Å3 | Prism, clear brown |
Z = 8 | 0.50 × 0.30 × 0.25 mm |
Data collection top
Bruker SMART X2S benchtop diffractometer | 1573 independent reflections |
Radiation source: XOS X-beam microfocus source | 1161 reflections with I > 2σ(I) |
Doubly curved silicon crystal monochromator | Rint = 0.063 |
Detector resolution: 8.3330 pixels mm-1 | θmax = 25.4°, θmin = 2.3° |
ω scans | h = −25→25 |
Absorption correction: multi-scan (SADABS; Bruker, 2015) | k = −9→6 |
Tmin = 0.61, Tmax = 0.98 | l = −15→14 |
8287 measured reflections | |
Refinement top
Refinement on F2 | 3 restraints |
Least-squares matrix: full | Hydrogen site location: mixed |
R[F2 > 2σ(F2)] = 0.047 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.138 | w = 1/[σ2(Fo2) + (0.0685P)2 + 0.2917P] where P = (Fo2 + 2Fc2)/3 |
S = 1.04 | (Δ/σ)max < 0.001 |
1573 reflections | Δρmax = 0.20 e Å−3 |
130 parameters | Δρmin = −0.26 e Å−3 |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
N1 | 0.45266 (9) | 0.5387 (2) | 0.61312 (15) | 0.0373 (4) | |
H1A | 0.4185 (11) | 0.559 (3) | 0.5265 (15) | 0.058 (6)* | |
H1B | 0.4267 (11) | 0.464 (2) | 0.6356 (19) | 0.058 (6)* | |
H1C | 0.4938 (12) | 0.470 (3) | 0.624 (2) | 0.082 (7)* | |
C1 | 0.47781 (9) | 0.7015 (2) | 0.68382 (16) | 0.0348 (4) | |
C2 | 0.45715 (11) | 0.8578 (2) | 0.6183 (2) | 0.0494 (5) | |
H2 | 0.4278 | 0.8585 | 0.5277 | 0.059* | |
C3 | 0.47923 (14) | 1.0128 (3) | 0.6850 (2) | 0.0671 (6) | |
H3 | 0.4654 | 1.1202 | 0.6401 | 0.081* | |
O1 | 0.57010 (7) | 0.38679 (19) | 0.63284 (13) | 0.0546 (4) | |
O2 | 0.64209 (8) | 0.36981 (19) | 0.84518 (13) | 0.0583 (5) | |
C4 | 0.63292 (11) | 0.3725 (2) | 0.73992 (18) | 0.0416 (5) | |
N2 | 0.69229 (9) | 0.3856 (2) | 0.62789 (14) | 0.0456 (4) | |
C5 | 0.70385 (10) | 0.3601 (2) | 0.74123 (16) | 0.0370 (4) | |
C6 | 0.77514 (11) | 0.3280 (3) | 0.85123 (18) | 0.0501 (5) | |
H6 | 0.7817 | 0.31 | 0.9303 | 0.06* | |
C7 | 0.83688 (11) | 0.3225 (3) | 0.8442 (2) | 0.0614 (6) | |
H7 | 0.8866 | 0.2985 | 0.9183 | 0.074* | |
C8 | 0.82608 (12) | 0.3519 (3) | 0.7301 (2) | 0.0601 (6) | |
H8 | 0.8681 | 0.3509 | 0.7239 | 0.072* | |
C9 | 0.75375 (12) | 0.3828 (3) | 0.6250 (2) | 0.0560 (6) | |
H9 | 0.7466 | 0.4034 | 0.5458 | 0.067* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
N1 | 0.0343 (8) | 0.0485 (9) | 0.0300 (9) | 0.0001 (6) | 0.0191 (7) | −0.0001 (7) |
C1 | 0.0282 (8) | 0.0462 (10) | 0.0342 (9) | −0.0011 (7) | 0.0204 (7) | −0.0006 (7) |
C2 | 0.0485 (11) | 0.0541 (12) | 0.0388 (12) | 0.0013 (9) | 0.0212 (10) | 0.0054 (9) |
C3 | 0.0789 (15) | 0.0464 (12) | 0.0541 (13) | 0.0022 (11) | 0.0259 (12) | 0.0083 (10) |
O1 | 0.0353 (7) | 0.0875 (11) | 0.0418 (9) | 0.0081 (6) | 0.0228 (7) | −0.0003 (7) |
O2 | 0.0554 (9) | 0.0876 (11) | 0.0445 (9) | 0.0184 (7) | 0.0362 (8) | 0.0113 (7) |
C4 | 0.0426 (11) | 0.0479 (10) | 0.0395 (12) | 0.0071 (8) | 0.0268 (10) | 0.0030 (8) |
N2 | 0.0367 (8) | 0.0653 (11) | 0.0371 (10) | 0.0045 (7) | 0.0227 (8) | 0.0015 (7) |
C5 | 0.0363 (10) | 0.0433 (10) | 0.0326 (11) | 0.0045 (7) | 0.0206 (9) | −0.0001 (7) |
C6 | 0.0428 (11) | 0.0667 (13) | 0.0366 (11) | 0.0098 (9) | 0.0204 (9) | 0.0009 (9) |
C7 | 0.0350 (11) | 0.0840 (16) | 0.0522 (14) | 0.0127 (10) | 0.0178 (10) | −0.0041 (11) |
C8 | 0.0404 (11) | 0.0846 (16) | 0.0636 (15) | 0.0054 (10) | 0.0349 (11) | −0.0058 (11) |
C9 | 0.0497 (12) | 0.0811 (15) | 0.0500 (13) | 0.0058 (10) | 0.0361 (11) | 0.0015 (11) |
Geometric parameters (Å, º) top
N1—C1 | 1.453 (2) | C4—C5 | 1.516 (2) |
N1—H1A | 0.925 (16) | N2—C9 | 1.341 (2) |
N1—H1B | 0.955 (15) | N2—C5 | 1.341 (2) |
N1—H1C | 0.969 (16) | C5—C6 | 1.377 (3) |
C1—C2 | 1.382 (2) | C6—C7 | 1.381 (3) |
C1—C1i | 1.386 (3) | C6—H6 | 0.95 |
C2—C3 | 1.380 (3) | C7—C8 | 1.362 (3) |
C2—H2 | 0.95 | C7—H7 | 0.95 |
C3—C3i | 1.362 (5) | C8—C9 | 1.365 (3) |
C3—H3 | 0.95 | C8—H8 | 0.95 |
O1—C4 | 1.255 (2) | C9—H9 | 0.95 |
O2—C4 | 1.248 (2) | | |
| | | |
C1—N1—H1A | 111.0 (14) | O1—C4—C5 | 116.96 (15) |
C1—N1—H1B | 113.7 (12) | C9—N2—C5 | 117.39 (17) |
H1A—N1—H1B | 105.6 (18) | N2—C5—C6 | 122.46 (16) |
C1—N1—H1C | 113.7 (15) | N2—C5—C4 | 115.13 (16) |
H1A—N1—H1C | 106.5 (18) | C6—C5—C4 | 122.40 (16) |
H1B—N1—H1C | 105.9 (19) | C5—C6—C7 | 118.53 (18) |
C2—C1—C1i | 119.77 (11) | C5—C6—H6 | 120.7 |
C2—C1—N1 | 119.62 (16) | C7—C6—H6 | 120.7 |
C1i—C1—N1 | 120.61 (9) | C8—C7—C6 | 119.54 (19) |
C3—C2—C1 | 119.8 (2) | C8—C7—H7 | 120.2 |
C3—C2—H2 | 120.1 | C6—C7—H7 | 120.2 |
C1—C2—H2 | 120.1 | C7—C8—C9 | 118.68 (18) |
C3i—C3—C2 | 120.42 (12) | C7—C8—H8 | 120.7 |
C3i—C3—H3 | 119.8 | C9—C8—H8 | 120.7 |
C2—C3—H3 | 119.8 | N2—C9—C8 | 123.38 (19) |
O2—C4—O1 | 125.73 (16) | N2—C9—H9 | 118.3 |
O2—C4—C5 | 117.31 (17) | C8—C9—H9 | 118.3 |
| | | |
C1i—C1—C2—C3 | −1.6 (3) | O1—C4—C5—C6 | −173.88 (18) |
N1—C1—C2—C3 | 178.30 (17) | N2—C5—C6—C7 | 0.2 (3) |
C1—C2—C3—C3i | −0.5 (4) | C4—C5—C6—C7 | −178.61 (18) |
C9—N2—C5—C6 | −1.5 (3) | C5—C6—C7—C8 | 1.2 (3) |
C9—N2—C5—C4 | 177.41 (16) | C6—C7—C8—C9 | −1.2 (3) |
O2—C4—C5—N2 | −171.91 (16) | C5—N2—C9—C8 | 1.5 (3) |
O1—C4—C5—N2 | 7.2 (2) | C7—C8—C9—N2 | −0.1 (4) |
O2—C4—C5—C6 | 7.0 (3) | | |
Symmetry code: (i) −x+1, y, −z+3/2. |
Hydrogen-bond geometry (Å, º) topCg(bdaH22+) refers to the ring centroid of the benzene-1,2-diaminium
cation. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···O1ii | 0.93 (2) | 2.24 (2) | 2.958 (2) | 135 (2) |
N1—H1A···N2ii | 0.93 (2) | 2.08 (2) | 2.907 (2) | 149 (2) |
N1—H1B···O2i | 0.96 (2) | 1.78 (2) | 2.7137 (19) | 164 (2) |
N1—H1C···O1 | 0.97 (2) | 1.70 (2) | 2.6533 (19) | 168 (2) |
C8—H8···Cg(bdaH22+)iii | 0.95 | 2.65 | 3.592 (3) | 170 |
Symmetry codes: (i) −x+1, y, −z+3/2; (ii) −x+1, −y+1, −z+1; (iii) x+1/2, y−1/2, z. |
4,5-Dimethylbenzene-1,2-diaminium bis(pyridine-2-carboxylate) (2)
top
Crystal data top
0.5C8H14N22+·C6H4NO2− | F(000) = 808 |
Mr = 191.21 | Dx = 1.252 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
a = 21.451 (4) Å | Cell parameters from 2093 reflections |
b = 9.0100 (19) Å | θ = 2.5–23.6° |
c = 12.585 (3) Å | µ = 0.09 mm−1 |
β = 123.447 (6)° | T = 200 K |
V = 2029.5 (7) Å3 | Block, clear colourless |
Z = 8 | 0.60 × 0.50 × 0.25 mm |
Data collection top
Bruker SMART X2S benchtop diffractometer | 1794 independent reflections |
Radiation source: XOS X-beam microfocus source | 1201 reflections with I > 2σ(I) |
Doubly curved silicon crystal monochromator | Rint = 0.080 |
Detector resolution: 8.3330 pixels mm-1 | θmax = 25.4°, θmin = 2.5° |
ω scans | h = −25→25 |
Absorption correction: multi-scan (SADABS; Bruker, 2015) | k = −10→10 |
Tmin = 0.61, Tmax = 0.98 | l = −15→14 |
7764 measured reflections | |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.044 | Hydrogen site location: mixed |
wR(F2) = 0.128 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.01 | w = 1/[σ2(Fo2) + (0.0512P)2] where P = (Fo2 + 2Fc2)/3 |
1794 reflections | (Δ/σ)max < 0.001 |
140 parameters | Δρmax = 0.14 e Å−3 |
3 restraints | Δρmin = −0.19 e Å−3 |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and
goodness of fit S are based on F2, conventional R-factors R are based
on F, with F set to zero for negative F2. The threshold expression of
F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is
not relevant to the choice of reflections for refinement. R-factors based
on F2 are statistically about twice as large as those based on F, and R-
factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O1 | 0.42726 (7) | 0.91055 (15) | 0.36543 (11) | 0.0570 (4) | |
O2 | 0.35918 (7) | 0.87343 (16) | 0.15592 (11) | 0.0620 (4) | |
N1 | 0.30655 (9) | 0.89341 (16) | 0.37525 (13) | 0.0501 (4) | |
N2 | 0.54686 (9) | 0.02590 (15) | 0.38711 (13) | 0.0381 (4) | |
H2A | 0.5757 (10) | −0.034 (2) | 0.3665 (19) | 0.071 (6)* | |
H2B | 0.5048 (9) | −0.028 (2) | 0.3788 (17) | 0.066 (6)* | |
H2C | 0.5774 (9) | 0.046 (2) | 0.4716 (14) | 0.058 (6)* | |
C1 | 0.36696 (10) | 0.87944 (17) | 0.26126 (16) | 0.0428 (5) | |
C2 | 0.30035 (9) | 0.84935 (18) | 0.26854 (14) | 0.0397 (4) | |
C3 | 0.23710 (10) | 0.7799 (2) | 0.16953 (16) | 0.0523 (5) | |
H3 | 0.2342 | 0.7504 | 0.0945 | 0.063* | |
C4 | 0.17839 (10) | 0.7550 (2) | 0.18321 (19) | 0.0625 (6) | |
H4 | 0.1348 | 0.7046 | 0.1186 | 0.075* | |
C5 | 0.18355 (11) | 0.8033 (2) | 0.29038 (19) | 0.0662 (6) | |
H5 | 0.1431 | 0.7897 | 0.3003 | 0.079* | |
C6 | 0.24789 (12) | 0.8718 (2) | 0.38375 (19) | 0.0620 (6) | |
H6 | 0.2509 | 0.9054 | 0.458 | 0.074* | |
C7 | 0.52181 (8) | 0.16447 (17) | 0.31600 (14) | 0.0351 (4) | |
C8 | 0.54091 (9) | 0.29813 (18) | 0.38044 (15) | 0.0438 (5) | |
H8 | 0.5689 | 0.2977 | 0.4709 | 0.053* | |
C9 | 0.52030 (10) | 0.4332 (2) | 0.31640 (17) | 0.0520 (5) | |
C10 | 0.54175 (15) | 0.5765 (2) | 0.3908 (2) | 0.0838 (8) | |
H10A | 0.5755 | 0.6329 | 0.3764 | 0.126* | |
H10B | 0.567 | 0.5543 | 0.4817 | 0.126* | |
H10C | 0.4967 | 0.6351 | 0.3624 | 0.126* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O1 | 0.0424 (8) | 0.0826 (10) | 0.0510 (8) | −0.0109 (6) | 0.0289 (7) | 0.0005 (6) |
O2 | 0.0674 (9) | 0.0805 (10) | 0.0570 (8) | −0.0222 (7) | 0.0462 (7) | −0.0156 (6) |
N1 | 0.0465 (10) | 0.0648 (10) | 0.0475 (9) | −0.0058 (7) | 0.0312 (7) | −0.0022 (7) |
N2 | 0.0395 (9) | 0.0422 (8) | 0.0363 (8) | 0.0010 (6) | 0.0233 (7) | 0.0011 (5) |
C1 | 0.0464 (12) | 0.0418 (9) | 0.0466 (10) | −0.0046 (8) | 0.0296 (9) | −0.0018 (7) |
C2 | 0.0401 (11) | 0.0426 (9) | 0.0405 (9) | −0.0013 (7) | 0.0247 (8) | 0.0027 (6) |
C3 | 0.0509 (12) | 0.0557 (11) | 0.0504 (11) | −0.0101 (9) | 0.0279 (9) | −0.0037 (8) |
C4 | 0.0429 (13) | 0.0680 (13) | 0.0675 (14) | −0.0153 (9) | 0.0246 (10) | 0.0040 (10) |
C5 | 0.0474 (14) | 0.0874 (17) | 0.0781 (15) | −0.0065 (11) | 0.0435 (12) | 0.0096 (11) |
C6 | 0.0559 (13) | 0.0867 (15) | 0.0595 (12) | −0.0032 (11) | 0.0419 (11) | −0.0009 (10) |
C7 | 0.0320 (10) | 0.0399 (9) | 0.0411 (8) | 0.0003 (6) | 0.0250 (7) | −0.0001 (6) |
C8 | 0.0445 (11) | 0.0479 (10) | 0.0443 (10) | −0.0048 (8) | 0.0278 (8) | −0.0043 (6) |
C9 | 0.0557 (12) | 0.0432 (10) | 0.0662 (11) | −0.0033 (8) | 0.0394 (10) | −0.0066 (7) |
C10 | 0.117 (2) | 0.0473 (12) | 0.0915 (16) | −0.0099 (12) | 0.0600 (15) | −0.0141 (9) |
Geometric parameters (Å, º) top
O1—C1 | 1.265 (2) | C4—H4 | 0.95 |
O2—C1 | 1.243 (2) | C5—C6 | 1.371 (3) |
N1—C6 | 1.334 (2) | C5—H5 | 0.95 |
N1—C2 | 1.335 (2) | C6—H6 | 0.95 |
N2—C7 | 1.455 (2) | C7—C8 | 1.382 (2) |
N2—H2A | 0.959 (16) | C7—C7i | 1.386 (3) |
N2—H2B | 0.979 (15) | C8—C9 | 1.390 (2) |
N2—H2C | 0.908 (14) | C8—H8 | 0.95 |
C1—C2 | 1.506 (3) | C9—C9i | 1.395 (4) |
C2—C3 | 1.386 (2) | C9—C10 | 1.510 (2) |
C3—C4 | 1.380 (3) | C10—H10A | 0.98 |
C3—H3 | 0.95 | C10—H10B | 0.98 |
C4—C5 | 1.363 (3) | C10—H10C | 0.98 |
| | | |
C6—N1—C2 | 117.50 (16) | C4—C5—H5 | 120.4 |
C7—N2—H2A | 113.1 (13) | C6—C5—H5 | 120.4 |
C7—N2—H2B | 110.8 (11) | N1—C6—C5 | 123.06 (19) |
H2A—N2—H2B | 112.6 (17) | N1—C6—H6 | 118.5 |
C7—N2—H2C | 109.7 (11) | C5—C6—H6 | 118.5 |
H2A—N2—H2C | 105.7 (16) | C8—C7—C7i | 119.29 (9) |
H2B—N2—H2C | 104.5 (17) | C8—C7—N2 | 119.81 (14) |
O2—C1—O1 | 125.06 (17) | C7i—C7—N2 | 120.89 (8) |
O2—C1—C2 | 118.88 (15) | C7—C8—C9 | 121.73 (16) |
O1—C1—C2 | 116.05 (15) | C7—C8—H8 | 119.1 |
N1—C2—C3 | 122.95 (17) | C9—C8—H8 | 119.1 |
N1—C2—C1 | 115.85 (14) | C8—C9—C9i | 118.90 (10) |
C3—C2—C1 | 121.20 (16) | C8—C9—C10 | 119.88 (18) |
C4—C3—C2 | 118.02 (18) | C9i—C9—C10 | 121.22 (12) |
C4—C3—H3 | 121.0 | C9—C10—H10A | 109.5 |
C2—C3—H3 | 121.0 | C9—C10—H10B | 109.5 |
C5—C4—C3 | 119.31 (18) | H10A—C10—H10B | 109.5 |
C5—C4—H4 | 120.3 | C9—C10—H10C | 109.5 |
C3—C4—H4 | 120.3 | H10A—C10—H10C | 109.5 |
C4—C5—C6 | 119.1 (2) | H10B—C10—H10C | 109.5 |
| | | |
C6—N1—C2—C3 | −1.6 (3) | C2—C3—C4—C5 | 2.2 (3) |
C6—N1—C2—C1 | 178.42 (15) | C3—C4—C5—C6 | −1.9 (3) |
O2—C1—C2—N1 | −163.60 (16) | C2—N1—C6—C5 | 2.0 (3) |
O1—C1—C2—N1 | 15.8 (2) | C4—C5—C6—N1 | −0.2 (3) |
O2—C1—C2—C3 | 16.5 (3) | C7i—C7—C8—C9 | −2.9 (3) |
O1—C1—C2—C3 | −164.09 (16) | N2—C7—C8—C9 | 177.82 (16) |
N1—C2—C3—C4 | −0.4 (3) | C7—C8—C9—C9i | −0.4 (3) |
C1—C2—C3—C4 | 179.53 (16) | C7—C8—C9—C10 | 179.38 (18) |
Symmetry code: (i) −x+1, y, −z+1/2. |
Hydrogen-bond geometry (Å, º) topCg(Me2bdaH22+) refers to the ring centroid of the
4,5-dimethyl-benzene-1,2-diaminium
cation. |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2A···O2ii | 0.96 (2) | 1.78 (2) | 2.729 (2) | 171 (2) |
N2—H2B···O1iii | 0.98 (2) | 1.67 (2) | 2.639 (2) | 169 (2) |
N2—H2C···O1iv | 0.91 (1) | 2.14 (2) | 2.9032 (19) | 141 (2) |
N2—H2C···N1iv | 0.91 (1) | 2.22 (2) | 2.999 (2) | 144 (2) |
C5—H5···Cg(Me2bdaH22+)v | 0.95 | 2.77 | 3.682 (3) | 160 |
Symmetry codes: (ii) −x+1, y−1, −z+1/2; (iii) x, y−1, z; (iv) −x+1, −y+1, −z+1; (v) x−1/2, y+1/2, z. |
Benzene-1,2-diamine bis(benzoic acid) (3)
top
Crystal data top
0.5C6H8N2·C7H6O2 | Dx = 1.272 Mg m−3 |
Mr = 176.19 | Mo Kα radiation, λ = 0.71073 Å |
Orthorhombic, Pbcn | Cell parameters from 4994 reflections |
a = 20.061 (3) Å | θ = 2.8–24.2° |
b = 7.8464 (10) Å | µ = 0.09 mm−1 |
c = 11.6895 (12) Å | T = 200 K |
V = 1840.0 (4) Å3 | Plate, clear colourless |
Z = 8 | 0.60 × 0.48 × 0.20 mm |
F(000) = 744 | |
Data collection top
Bruker SMART X2S benchtop diffractometer | 1638 independent reflections |
Radiation source: XOS X-beam microfocus source | 1337 reflections with I > 2σ(I) |
Doubly curved silicon crystal monochromator | Rint = 0.064 |
Detector resolution: 8.3330 pixels mm-1 | θmax = 25.2°, θmin = 2.8° |
ω scans | h = −23→23 |
Absorption correction: multi-scan (SADABS; Bruker, 2015) | k = −9→9 |
Tmin = 0.64, Tmax = 0.98 | l = −13→13 |
30170 measured reflections | |
Refinement top
Refinement on F2 | Hydrogen site location: mixed |
Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
R[F2 > 2σ(F2)] = 0.030 | w = 1/[σ2(Fo2) + (0.0426P)2 + 0.2144P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.087 | (Δ/σ)max < 0.001 |
S = 1.05 | Δρmax = 0.12 e Å−3 |
1638 reflections | Δρmin = −0.12 e Å−3 |
131 parameters | Extinction correction: SHELXL2014 (Sheldrick, 2015) |
0 restraints | Extinction coefficient: 0.036 (2) |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O1 | 0.35377 (4) | 0.51824 (13) | 0.24544 (7) | 0.0577 (3) | |
H1C | 0.3984 (9) | 0.489 (2) | 0.2143 (15) | 0.094 (5)* | |
O2 | 0.40648 (4) | 0.59582 (12) | 0.40443 (7) | 0.0566 (3) | |
N1 | 0.46617 (5) | 0.40589 (14) | 0.14608 (9) | 0.0445 (3) | |
H1A | 0.4497 (7) | 0.3912 (16) | 0.0737 (13) | 0.061 (4)* | |
H1B | 0.5014 (8) | 0.4803 (19) | 0.1440 (12) | 0.060 (4)* | |
C1 | 0.16309 (8) | 0.6783 (2) | 0.48889 (14) | 0.0698 (4) | |
H1 | 0.1204 | 0.7037 | 0.5196 | 0.084* | |
C2 | 0.21951 (8) | 0.71645 (18) | 0.55063 (13) | 0.0661 (4) | |
H2 | 0.2156 | 0.7662 | 0.6244 | 0.079* | |
C3 | 0.28164 (7) | 0.68275 (16) | 0.50592 (11) | 0.0537 (4) | |
H3 | 0.3205 | 0.7097 | 0.5488 | 0.064* | |
C4 | 0.28756 (6) | 0.60956 (14) | 0.39861 (10) | 0.0421 (3) | |
C5 | 0.35476 (6) | 0.57469 (14) | 0.35138 (10) | 0.0425 (3) | |
C6 | 0.16825 (7) | 0.6037 (2) | 0.38286 (14) | 0.0668 (4) | |
H6 | 0.1292 | 0.5757 | 0.341 | 0.08* | |
C7 | 0.23038 (6) | 0.56947 (16) | 0.33734 (12) | 0.0534 (3) | |
H7 | 0.234 | 0.5184 | 0.2639 | 0.064* | |
C8 | 0.48442 (7) | −0.05934 (19) | 0.19776 (14) | 0.0703 (4) | |
H8 | 0.4736 | −0.1642 | 0.1616 | 0.084* | |
C9 | 0.46876 (6) | 0.09306 (17) | 0.14506 (11) | 0.0544 (4) | |
H9 | 0.4472 | 0.0922 | 0.0727 | 0.065* | |
C10 | 0.48419 (5) | 0.24690 (15) | 0.19649 (10) | 0.0403 (3) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O1 | 0.0473 (5) | 0.0887 (7) | 0.0370 (5) | 0.0157 (5) | −0.0043 (4) | −0.0083 (4) |
O2 | 0.0435 (5) | 0.0792 (6) | 0.0470 (5) | 0.0051 (4) | −0.0086 (4) | −0.0077 (4) |
N1 | 0.0400 (6) | 0.0623 (7) | 0.0311 (6) | −0.0011 (5) | −0.0041 (4) | 0.0016 (4) |
C1 | 0.0568 (9) | 0.0712 (9) | 0.0815 (11) | 0.0126 (7) | 0.0262 (8) | 0.0159 (8) |
C2 | 0.0750 (10) | 0.0680 (9) | 0.0552 (9) | 0.0142 (7) | 0.0189 (7) | 0.0008 (7) |
C3 | 0.0589 (8) | 0.0570 (7) | 0.0452 (7) | 0.0086 (6) | 0.0016 (6) | −0.0003 (6) |
C4 | 0.0444 (7) | 0.0431 (6) | 0.0387 (6) | 0.0053 (5) | −0.0001 (5) | 0.0060 (5) |
C5 | 0.0456 (7) | 0.0470 (6) | 0.0350 (6) | 0.0056 (5) | −0.0049 (5) | 0.0033 (5) |
C6 | 0.0423 (7) | 0.0789 (10) | 0.0793 (11) | −0.0010 (7) | 0.0007 (7) | 0.0119 (8) |
C7 | 0.0472 (7) | 0.0624 (8) | 0.0505 (8) | 0.0002 (6) | −0.0025 (6) | 0.0028 (6) |
C8 | 0.0651 (9) | 0.0578 (8) | 0.0879 (11) | −0.0009 (7) | −0.0181 (8) | −0.0114 (7) |
C9 | 0.0448 (7) | 0.0673 (8) | 0.0512 (8) | 0.0002 (6) | −0.0078 (6) | −0.0111 (6) |
C10 | 0.0288 (5) | 0.0570 (7) | 0.0352 (6) | 0.0012 (5) | 0.0019 (4) | −0.0005 (5) |
Geometric parameters (Å, º) top
O1—C5 | 1.3153 (14) | C3—H3 | 0.95 |
O1—H1C | 0.994 (19) | C4—C7 | 1.3885 (17) |
O2—C5 | 1.2201 (14) | C4—C5 | 1.4822 (16) |
N1—C10 | 1.4262 (15) | C6—C7 | 1.3816 (19) |
N1—H1A | 0.916 (15) | C6—H6 | 0.95 |
N1—H1B | 0.916 (16) | C7—H7 | 0.95 |
C1—C6 | 1.375 (2) | C8—C8i | 1.372 (3) |
C1—C2 | 1.375 (2) | C8—C9 | 1.3814 (19) |
C1—H1 | 0.95 | C8—H8 | 0.95 |
C2—C3 | 1.3771 (19) | C9—C10 | 1.3836 (17) |
C2—H2 | 0.95 | C9—H9 | 0.95 |
C3—C4 | 1.3848 (17) | C10—C10i | 1.403 (2) |
| | | |
C5—O1—H1C | 114.1 (10) | O2—C5—C4 | 123.99 (11) |
C10—N1—H1A | 111.3 (8) | O1—C5—C4 | 113.52 (10) |
C10—N1—H1B | 111.9 (9) | C1—C6—C7 | 119.87 (14) |
H1A—N1—H1B | 109.5 (12) | C1—C6—H6 | 120.1 |
C6—C1—C2 | 120.25 (13) | C7—C6—H6 | 120.1 |
C6—C1—H1 | 119.9 | C6—C7—C4 | 120.17 (13) |
C2—C1—H1 | 119.9 | C6—C7—H7 | 119.9 |
C1—C2—C3 | 120.26 (13) | C4—C7—H7 | 119.9 |
C1—C2—H2 | 119.9 | C8i—C8—C9 | 120.04 (8) |
C3—C2—H2 | 119.9 | C8i—C8—H8 | 120.0 |
C2—C3—C4 | 120.07 (13) | C9—C8—H8 | 120.0 |
C2—C3—H3 | 120.0 | C8—C9—C10 | 120.69 (12) |
C4—C3—H3 | 120.0 | C8—C9—H9 | 119.7 |
C3—C4—C7 | 119.36 (11) | C10—C9—H9 | 119.7 |
C3—C4—C5 | 119.48 (11) | C9—C10—C10i | 119.26 (7) |
C7—C4—C5 | 121.16 (11) | C9—C10—N1 | 121.79 (11) |
O2—C5—O1 | 122.49 (11) | C10i—C10—N1 | 118.89 (6) |
| | | |
C6—C1—C2—C3 | 1.1 (2) | C2—C1—C6—C7 | −1.1 (2) |
C1—C2—C3—C4 | −0.3 (2) | C1—C6—C7—C4 | 0.3 (2) |
C2—C3—C4—C7 | −0.53 (19) | C3—C4—C7—C6 | 0.52 (19) |
C2—C3—C4—C5 | 179.74 (11) | C5—C4—C7—C6 | −179.75 (11) |
C3—C4—C5—O2 | 5.18 (18) | C8i—C8—C9—C10 | 0.0 (3) |
C7—C4—C5—O2 | −174.54 (11) | C8—C9—C10—C10i | −0.3 (2) |
C3—C4—C5—O1 | −174.73 (11) | C8—C9—C10—N1 | −177.43 (12) |
C7—C4—C5—O1 | 5.54 (16) | | |
Symmetry code: (i) −x+1, y, −z+1/2. |
Hydrogen-bond geometry (Å, º) topCg(bda) refers to the ring centroid of the benzene-1,2-diamine. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1C···N1 | 0.994 (19) | 1.706 (19) | 2.6852 (13) | 167.8 (16) |
N1—H1A···O2ii | 0.916 (15) | 2.163 (16) | 3.0681 (14) | 169.8 (12) |
N1—H1B···O2i | 0.916 (16) | 2.136 (16) | 3.0160 (14) | 160.8 (12) |
C6—H6···Cg(bda)iii | 0.95 | 2.81 | 3.7163 (16) | 161 |
Symmetry codes: (i) −x+1, y, −z+1/2; (ii) x, −y+1, z−1/2; (iii) x−1/2, y+1/2, −z+1/2. |
Interaction energies (kJ mol-1) calculated for (3) topInteraction energies were calculated employing the CE-B3LYP/6-31G(d,p)
functional/basis set combination and are corrected for BSSE using the CP
method. |
Interaction(s) | E'ele | E'pol | E'dis | E'rep | Etot |
O—H···N/N—H···O | -98.5 | -22.7 | -17.0 | 119.5 | -61.9 |
N—H···O | -20.5 | -4.4 | -9.2 | 20.2 | -20.5 |
π–π | -2.7 | -0.6 | -24.8 | 11.7 | -17.8 |
C—H···π | -4.1 | -1.0 | -13.3 | 7.3 | -12.1 |
Scale factors used to determine Etot: kele = 1.057,
kpol = 0.740, kdisp = 0.871, krep = 0.618
(Mackenzie et al., 2017). See Section 2.3 for calculation
details. |