The crystal structure of the free acid form of NAD+ tetrahydrate (nicotinamide adenine dinucleotide tetrahydrate or 3-carbamoyl-1-β-D-ribofuranosylpyridinium hydroxide 5′-ester with adenosine 5′-pyrophosphate inner salt tetrahydrate, C21H27N7O14P2·4H2O) has been determined at 100 K. NAD+ is the coenzyme of several protein families and plays a dominant role in biological redox processes. In this study, the molecule shows a different conformation from the one usually found in holoenzyme complexes.
Supporting information
CCDC reference: 146077
Data collection: COLLECT (Nonius, 1998); cell refinement: DENZO-SMN (Otwinowski & Minor, 1997); data reduction: DENZO-SMN (Otwinowski & Minor, 1997); program(s) used to solve structure: SHELXS97 (Sheldrick, 1990); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); software used to prepare material for publication: SHELXL97 (Sheldrick, 1997).
β-Nicotinamide Adenine Dinucleotide
top
Crystal data top
C21H27N7O4P2·4(H2O) | Z = 1 |
Mr = 735.50 | F(000) = 384 |
Triclinic, P1 | Dx = 1.579 Mg m−3 |
a = 8.592 (10) Å | Mo Kα radiation, λ = 0.70900 Å |
b = 8.845 (10) Å | Cell parameters from 141 reflections |
c = 11.192 (10) Å | θ = 3.0–19.0° |
α = 109.64 (5)° | µ = 0.23 mm−1 |
β = 90.56 (5)° | T = 100 K |
γ = 103.92 (5)° | Irregular, colourless |
V = 773.7 (14) Å3 | 0.41 × 0.35 × 0.3 mm |
Data collection top
Nonius KappaCCD diffractometer | 7439 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.026 |
Graphite monochromator | θmax = 36.3°, θmin = 2.5° |
oscillation scans | h = 0→14 |
15736 measured reflections | k = −14→14 |
7459 independent reflections | l = −18→18 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.019 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.052 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.01 | Calculated w = 1/[σ2(Fo2) + (0.0371P)2 + 0.0533P] where P = (Fo2 + 2Fc2)/3 |
7459 reflections | (Δ/σ)max = 0.001 |
573 parameters | Δρmax = 0.32 e Å−3 |
15 restraints | Δρmin = −0.25 e Å−3 |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O1 | 0.09222 (7) | −0.20496 (7) | 0.23359 (6) | 0.01127 (9) | |
P1 | 0.22886 (2) | −0.29706 (2) | 0.187743 (17) | 0.00871 (3) | |
O2 | 0.16635 (8) | −0.48234 (8) | 0.14639 (6) | 0.01377 (9) | |
O3 | 0.31006 (7) | −0.23175 (8) | 0.09062 (6) | 0.01284 (9) | |
O4 | 0.34589 (7) | −0.22830 (8) | 0.31680 (5) | 0.01148 (9) | |
C1 | 0.49237 (9) | −0.28327 (10) | 0.30853 (7) | 0.01192 (11) | |
HC1A | 0.578 (2) | −0.205 (2) | 0.2914 (18) | 0.021 (4)* | |
HC1B | 0.476 (3) | −0.382 (3) | 0.246 (2) | 0.028 (5)* | |
C2 | 0.53848 (8) | −0.29898 (9) | 0.43348 (7) | 0.00979 (10) | |
HC2 | 0.633 (2) | −0.337 (2) | 0.4226 (19) | 0.021 (4)* | |
C3 | 0.40805 (8) | −0.41017 (9) | 0.48088 (7) | 0.00971 (10) | |
HC3 | 0.334 (2) | −0.494 (2) | 0.4130 (19) | 0.022 (4)* | |
O6 | 0.48866 (7) | −0.48042 (7) | 0.55255 (6) | 0.01263 (9) | |
HO6 | 0.425 (2) | −0.563 (2) | 0.5603 (16) | 0.015 (3)* | |
C4 | 0.32408 (8) | −0.28576 (9) | 0.56760 (7) | 0.00957 (10) | |
HC4 | 0.251 (2) | −0.268 (2) | 0.5181 (17) | 0.013 (3)* | |
O7 | 0.24503 (7) | −0.34097 (8) | 0.66095 (6) | 0.01364 (9) | |
HO7 | 0.154 (3) | −0.315 (3) | 0.674 (2) | 0.034 (5)* | |
C5 | 0.46680 (9) | −0.13013 (9) | 0.62506 (7) | 0.00988 (10) | |
HC5 | 0.512 (2) | −0.128 (2) | 0.7019 (19) | 0.020 (4)* | |
O5 | 0.57844 (7) | −0.13590 (7) | 0.53335 (6) | 0.01170 (9) | |
N1 | 0.42122 (8) | 0.02677 (8) | 0.65298 (6) | 0.01029 (9) | |
C6 | 0.38847 (9) | 0.12487 (9) | 0.76831 (7) | 0.01057 (10) | |
N2 | 0.39494 (9) | 0.09973 (9) | 0.88112 (7) | 0.01350 (11) | |
C7 | 0.35170 (11) | 0.21523 (10) | 0.97369 (7) | 0.01379 (12) | |
HC7 | 0.340 (2) | 0.208 (3) | 1.0502 (19) | 0.021 (4)* | |
N3 | 0.30738 (9) | 0.34757 (9) | 0.96171 (6) | 0.01252 (10) | |
HN3 | 0.274 (2) | 0.412 (2) | 1.0344 (18) | 0.020 (4)* | |
C8 | 0.30890 (9) | 0.38055 (9) | 0.85082 (7) | 0.01079 (10) | |
N5 | 0.27135 (9) | 0.51567 (9) | 0.84829 (7) | 0.01393 (11) | |
HN5A | 0.266 (2) | 0.592 (3) | 0.919 (2) | 0.022 (4)* | |
HN5B | 0.270 (3) | 0.539 (3) | 0.777 (2) | 0.028 (5)* | |
C9 | 0.35083 (9) | 0.25872 (9) | 0.74704 (7) | 0.01035 (10) | |
N4 | 0.36277 (8) | 0.24590 (8) | 0.62154 (6) | 0.01088 (9) | |
C10 | 0.40470 (9) | 0.10543 (9) | 0.56878 (7) | 0.01111 (11) | |
HC10 | 0.422 (2) | 0.061 (2) | 0.4802 (18) | 0.017 (4)* | |
P2 | −0.067929 (19) | −0.24839 (2) | 0.305121 (16) | 0.00809 (3) | |
O8 | −0.02441 (8) | −0.30033 (8) | 0.41150 (6) | 0.01280 (9) | |
O9 | −0.20305 (7) | −0.35642 (7) | 0.20699 (6) | 0.01254 (9) | |
O10 | −0.09903 (7) | −0.06741 (7) | 0.35813 (6) | 0.01092 (9) | |
C11 | 0.01603 (10) | 0.05681 (10) | 0.45951 (8) | 0.01462 (12) | |
H11A | 0.125 (2) | 0.061 (2) | 0.4381 (19) | 0.023 (4)* | |
H11B | 0.002 (3) | 0.030 (3) | 0.543 (2) | 0.032 (5)* | |
C12 | −0.01570 (9) | 0.22370 (9) | 0.48058 (7) | 0.01104 (10) | |
HC12 | 0.054 (2) | 0.301 (2) | 0.5567 (16) | 0.014 (3)* | |
C13 | −0.19323 (9) | 0.22439 (9) | 0.49128 (7) | 0.01091 (11) | |
HC13 | −0.256 (2) | 0.130 (2) | 0.5133 (18) | 0.016 (3)* | |
O12 | −0.21141 (9) | 0.37699 (8) | 0.57863 (6) | 0.01525 (10) | |
HO12 | −0.222 (3) | 0.357 (3) | 0.648 (2) | 0.034 (5)* | |
C14 | −0.25174 (9) | 0.21269 (9) | 0.35781 (7) | 0.01027 (10) | |
HC14 | −0.285 (2) | 0.102 (2) | 0.3040 (18) | 0.018 (4)* | |
O13 | −0.37894 (8) | 0.28780 (9) | 0.35705 (6) | 0.01635 (11) | |
HO13 | −0.372 (3) | 0.357 (3) | 0.434 (2) | 0.028 (5)* | |
C15 | −0.09715 (9) | 0.29943 (9) | 0.31379 (7) | 0.01056 (10) | |
HC15 | −0.079 (2) | 0.414 (2) | 0.3340 (16) | 0.012 (3)* | |
O11 | 0.03325 (7) | 0.27523 (8) | 0.37342 (6) | 0.01362 (9) | |
N6 | −0.09383 (8) | 0.22511 (8) | 0.17216 (6) | 0.01059 (9) | |
C16 | −0.03118 (10) | 0.09397 (10) | 0.12053 (7) | 0.01339 (11) | |
HC16 | 0.011 (2) | 0.062 (3) | 0.1804 (19) | 0.023 (4)* | |
C17 | −0.03108 (11) | 0.02816 (11) | −0.01045 (8) | 0.01503 (12) | |
HC17 | 0.018 (3) | −0.059 (3) | −0.040 (2) | 0.028 (5)* | |
C18 | −0.09276 (10) | 0.09956 (10) | −0.08761 (7) | 0.01397 (12) | |
HC18 | −0.090 (3) | 0.061 (3) | −0.180 (2) | 0.026 (4)* | |
C19 | −0.15467 (9) | 0.23635 (9) | −0.03126 (7) | 0.01146 (11) | |
C21 | −0.21200 (10) | 0.31981 (10) | −0.11383 (7) | 0.01391 (12) | |
O14 | −0.22790 (11) | 0.24830 (10) | −0.23135 (6) | 0.02096 (13) | |
N7 | −0.24234 (11) | 0.46731 (10) | −0.05732 (7) | 0.01766 (13) | |
HN7A | −0.268 (3) | 0.524 (3) | −0.107 (2) | 0.033 (5)* | |
HN7B | −0.218 (2) | 0.526 (3) | 0.0270 (19) | 0.023 (4)* | |
C20 | −0.15538 (9) | 0.29574 (9) | 0.10009 (7) | 0.01118 (10) | |
HC20 | −0.190 (2) | 0.386 (2) | 0.1476 (16) | 0.015 (3)* | |
OW1 | 0.56459 (9) | −0.10609 (9) | −0.03125 (8) | 0.01913 (12) | |
HW1B | 0.514 (2) | −0.042 (2) | −0.0627 (18) | 0.024 (4)* | |
HW1A | 0.492 (3) | −0.158 (3) | 0.015 (2) | 0.048 (7)* | |
OW2 | −0.30386 (9) | −0.33492 (9) | 0.78751 (7) | 0.01745 (11) | |
HW2A | −0.353 (3) | −0.260 (3) | 0.846 (2) | 0.056 (8)* | |
HW2B | −0.374 (2) | −0.377 (2) | 0.7138 (13) | 0.024 (4)* | |
OW3 | −0.01426 (8) | −0.21778 (9) | 0.67140 (6) | 0.01693 (11) | |
HW3A | −0.1068 (19) | −0.270 (3) | 0.701 (2) | 0.035 (5)* | |
HW3B | −0.033 (2) | −0.253 (2) | 0.5821 (9) | 0.022 (4)* | |
OW4 | 0.32682 (9) | 0.11814 (10) | 0.21374 (8) | 0.02130 (12) | |
HW4A | 0.326 (3) | 0.0036 (14) | 0.179 (2) | 0.044 (6)* | |
HW4B | 0.434 (2) | 0.170 (4) | 0.258 (4) | 0.095 (13)* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O1 | 0.0102 (2) | 0.0129 (2) | 0.0139 (2) | 0.00574 (17) | 0.00464 (16) | 0.00665 (18) |
P1 | 0.00939 (6) | 0.00918 (7) | 0.00797 (6) | 0.00338 (5) | 0.00286 (5) | 0.00277 (5) |
O2 | 0.0150 (2) | 0.0093 (2) | 0.0157 (2) | 0.00289 (17) | 0.00514 (18) | 0.00267 (18) |
O3 | 0.0146 (2) | 0.0145 (2) | 0.0102 (2) | 0.00347 (18) | 0.00536 (17) | 0.00531 (18) |
O4 | 0.0113 (2) | 0.0149 (2) | 0.0092 (2) | 0.00720 (17) | 0.00166 (16) | 0.00280 (17) |
C1 | 0.0113 (2) | 0.0161 (3) | 0.0110 (3) | 0.0074 (2) | 0.0034 (2) | 0.0053 (2) |
C2 | 0.0103 (2) | 0.0095 (2) | 0.0105 (2) | 0.00427 (19) | 0.00205 (19) | 0.0033 (2) |
C3 | 0.0103 (2) | 0.0084 (2) | 0.0109 (2) | 0.00356 (19) | 0.00152 (19) | 0.00315 (19) |
O6 | 0.0137 (2) | 0.0107 (2) | 0.0170 (2) | 0.00564 (17) | 0.00253 (18) | 0.00752 (18) |
C4 | 0.0102 (2) | 0.0098 (2) | 0.0104 (2) | 0.00381 (19) | 0.00276 (19) | 0.0048 (2) |
O7 | 0.0142 (2) | 0.0171 (2) | 0.0152 (2) | 0.00719 (19) | 0.00654 (18) | 0.0105 (2) |
C5 | 0.0120 (2) | 0.0084 (2) | 0.0099 (2) | 0.0048 (2) | 0.00145 (19) | 0.0027 (2) |
O5 | 0.0110 (2) | 0.0094 (2) | 0.0127 (2) | 0.00214 (16) | 0.00365 (17) | 0.00165 (17) |
N1 | 0.0141 (2) | 0.0084 (2) | 0.0093 (2) | 0.00527 (18) | 0.00211 (18) | 0.00263 (18) |
C6 | 0.0142 (3) | 0.0091 (2) | 0.0096 (2) | 0.0050 (2) | 0.0028 (2) | 0.0035 (2) |
N2 | 0.0201 (3) | 0.0123 (2) | 0.0110 (2) | 0.0077 (2) | 0.0044 (2) | 0.0053 (2) |
C7 | 0.0204 (3) | 0.0127 (3) | 0.0109 (3) | 0.0077 (2) | 0.0045 (2) | 0.0049 (2) |
N3 | 0.0180 (3) | 0.0113 (2) | 0.0104 (2) | 0.0070 (2) | 0.0043 (2) | 0.00425 (19) |
C8 | 0.0136 (3) | 0.0093 (2) | 0.0099 (2) | 0.0045 (2) | 0.0021 (2) | 0.0027 (2) |
N5 | 0.0224 (3) | 0.0106 (2) | 0.0112 (2) | 0.0089 (2) | 0.0035 (2) | 0.0035 (2) |
C9 | 0.0136 (3) | 0.0087 (2) | 0.0093 (2) | 0.0048 (2) | 0.0020 (2) | 0.0026 (2) |
N4 | 0.0147 (2) | 0.0093 (2) | 0.0092 (2) | 0.00473 (19) | 0.00139 (18) | 0.00280 (18) |
C10 | 0.0149 (3) | 0.0100 (3) | 0.0092 (2) | 0.0050 (2) | 0.0011 (2) | 0.0032 (2) |
P2 | 0.00893 (6) | 0.00745 (6) | 0.00837 (6) | 0.00350 (5) | 0.00186 (5) | 0.00238 (5) |
O8 | 0.0176 (2) | 0.0127 (2) | 0.0113 (2) | 0.00630 (18) | 0.00307 (17) | 0.00651 (18) |
O9 | 0.0114 (2) | 0.0109 (2) | 0.0122 (2) | 0.00306 (17) | −0.00031 (17) | 0.00005 (17) |
O10 | 0.0121 (2) | 0.00812 (19) | 0.0116 (2) | 0.00513 (16) | −0.00118 (16) | 0.00048 (16) |
C11 | 0.0180 (3) | 0.0100 (3) | 0.0138 (3) | 0.0063 (2) | −0.0054 (2) | −0.0001 (2) |
C12 | 0.0148 (3) | 0.0090 (2) | 0.0088 (2) | 0.0039 (2) | −0.0007 (2) | 0.0020 (2) |
C13 | 0.0156 (3) | 0.0095 (2) | 0.0089 (2) | 0.0053 (2) | 0.0028 (2) | 0.0034 (2) |
O12 | 0.0248 (3) | 0.0132 (2) | 0.0093 (2) | 0.0105 (2) | 0.00389 (19) | 0.00196 (18) |
C14 | 0.0123 (2) | 0.0098 (2) | 0.0091 (2) | 0.0048 (2) | 0.00157 (19) | 0.0026 (2) |
O13 | 0.0167 (2) | 0.0198 (3) | 0.0140 (2) | 0.0115 (2) | 0.00120 (19) | 0.0031 (2) |
C15 | 0.0147 (3) | 0.0086 (2) | 0.0082 (2) | 0.0030 (2) | 0.0011 (2) | 0.00268 (19) |
O11 | 0.0120 (2) | 0.0176 (2) | 0.0117 (2) | 0.00262 (18) | 0.00028 (17) | 0.00651 (19) |
N6 | 0.0142 (2) | 0.0090 (2) | 0.0087 (2) | 0.00324 (19) | 0.00212 (18) | 0.00317 (18) |
C16 | 0.0174 (3) | 0.0122 (3) | 0.0120 (3) | 0.0066 (2) | 0.0031 (2) | 0.0040 (2) |
C17 | 0.0198 (3) | 0.0144 (3) | 0.0118 (3) | 0.0082 (2) | 0.0040 (2) | 0.0030 (2) |
C18 | 0.0179 (3) | 0.0131 (3) | 0.0100 (3) | 0.0049 (2) | 0.0029 (2) | 0.0023 (2) |
C19 | 0.0152 (3) | 0.0103 (3) | 0.0082 (2) | 0.0025 (2) | 0.0012 (2) | 0.0029 (2) |
C21 | 0.0189 (3) | 0.0132 (3) | 0.0092 (3) | 0.0032 (2) | 0.0001 (2) | 0.0040 (2) |
O14 | 0.0358 (4) | 0.0190 (3) | 0.0080 (2) | 0.0093 (3) | 0.0002 (2) | 0.0030 (2) |
N7 | 0.0292 (4) | 0.0148 (3) | 0.0101 (2) | 0.0090 (3) | −0.0011 (2) | 0.0035 (2) |
C20 | 0.0157 (3) | 0.0096 (2) | 0.0087 (2) | 0.0037 (2) | 0.0017 (2) | 0.0034 (2) |
OW1 | 0.0176 (3) | 0.0203 (3) | 0.0251 (3) | 0.0078 (2) | 0.0093 (2) | 0.0129 (2) |
OW2 | 0.0193 (3) | 0.0194 (3) | 0.0152 (2) | 0.0092 (2) | 0.0008 (2) | 0.0052 (2) |
OW3 | 0.0162 (2) | 0.0207 (3) | 0.0143 (2) | 0.0064 (2) | 0.00351 (19) | 0.0053 (2) |
OW4 | 0.0199 (3) | 0.0199 (3) | 0.0244 (3) | 0.0045 (2) | −0.0003 (2) | 0.0088 (3) |
Geometric parameters (Å, º) top
O1—P1 | 1.580 (2) | O10—C11 | 1.4453 (18) |
O1—P2 | 1.630 (2) | C11—C12 | 1.507 (2) |
P1—O3 | 1.498 (1) | C11—H11A | 0.96 (2) |
P1—O2 | 1.500 (2) | C11—H11B | 1.03 (2) |
P1—O4 | 1.598 (2) | C12—O11 | 1.4520 (15) |
O4—C1 | 1.448 (2) | C12—C13 | 1.533 (2) |
C1—C2 | 1.509 (2) | C12—HC12 | 0.98 (2) |
C1—HC1A | 0.95 (2) | C13—O12 | 1.4210 (17) |
C1—HC1B | 0.90 (2) | C13—C14 | 1.5333 (17) |
C2—O5 | 1.4553 (18) | C13—HC13 | 0.99 (2) |
C2—C3 | 1.5286 (16) | O12—HO12 | 0.86 (2) |
C2—HC2 | 0.94 (2) | C14—O13 | 1.4102 (16) |
C3—O6 | 1.4285 (14) | C14—C15 | 1.5403 (18) |
C3—C4 | 1.5333 (16) | C14—HC14 | 0.93 (2) |
C3—HC3 | 0.96 (2) | O13—HO13 | 0.86 (2) |
O6—HO6 | 0.83 (2) | C15—O11 | 1.3940 (16) |
C4—O7 | 1.4103 (14) | C15—N6 | 1.502 (2) |
C4—C5 | 1.5457 (19) | C15—HC15 | 0.93 (2) |
C4—HC4 | 0.91 (2) | N6—C20 | 1.345 (1) |
O7—HO7 | 0.86 (2) | N6—C16 | 1.351 (2) |
C5—O5 | 1.4085 (15) | C16—C17 | 1.384 (2) |
C5—N1 | 1.466 (2) | C16—HC16 | 0.91 (2) |
C5—HC5 | 0.93 (2) | C17—C18 | 1.394 (2) |
N1—C6 | 1.367 (2) | C17—HC17 | 0.93 (2) |
N1—C10 | 1.371 (1) | C18—C19 | 1.396 (2) |
C6—N2 | 1.356 (2) | C18—HC18 | 0.97 (2) |
C6—C9 | 1.391 (2) | C19—C20 | 1.386 (2) |
N2—C7 | 1.317 (2) | C19—C21 | 1.505 (2) |
C7—N3 | 1.361 (2) | C21—O14 | 1.243 (2) |
C7—HC7 | 0.88 (2) | C21—N7 | 1.335 (2) |
N3—C8 | 1.367 (2) | N7—HN7A | 0.92 (2) |
N3—HN3 | 0.91 (2) | N7—HN7B | 0.91 (2) |
C8—N5 | 1.320 (2) | C20—HC20 | 0.92 (2) |
C8—C9 | 1.412 (2) | OW1—HW1B | 0.937 (9) |
N5—HN5A | 0.86 (2) | OW1—HW1A | 0.94 (1) |
N5—HN5B | 0.89 (2) | OW2—HW2A | 0.95 (1) |
C9—N4 | 1.378 (2) | OW2—HW2B | 0.926 (9) |
N4—C10 | 1.322 (2) | OW3—HW3A | 0.94 (1) |
C10—HC10 | 0.96 (2) | OW3—HW3B | 0.941 (9) |
P2—O9 | 1.484 (2) | OW4—HW4A | 0.95 (1) |
P2—O8 | 1.487 (1) | OW4—HW4B | 0.97 (1) |
P2—O10 | 1.599 (2) | | |
| | | |
P1—O1—P2 | 132.45 (7) | O9—P2—O10 | 107.15 (8) |
O3—P1—O2 | 115.86 (7) | O8—P2—O10 | 110.97 (7) |
O3—P1—O1 | 107.14 (7) | O9—P2—O1 | 108.60 (9) |
O2—P1—O1 | 112.13 (8) | O8—P2—O1 | 108.98 (7) |
O3—P1—O4 | 109.93 (8) | O10—P2—O1 | 98.58 (7) |
O2—P1—O4 | 110.20 (7) | C11—O10—P2 | 116.34 (8) |
O1—P1—O4 | 100.45 (8) | O10—C11—C12 | 108.51 (9) |
C1—O4—P1 | 115.82 (8) | O10—C11—H11A | 111.3 (12) |
O4—C1—C2 | 109.59 (7) | C12—C11—H11A | 108.8 (12) |
O4—C1—HC1A | 110.3 (12) | O10—C11—H11B | 109.9 (13) |
C2—C1—HC1A | 108.7 (12) | C12—C11—H11B | 109.0 (13) |
O4—C1—HC1B | 109.4 (14) | H11A—C11—H11B | 109.3 (17) |
C2—C1—HC1B | 109.5 (14) | O11—C12—C11 | 108.96 (8) |
HC1A—C1—HC1B | 109 (2) | O11—C12—C13 | 106.98 (7) |
O5—C2—C1 | 109.62 (10) | C11—C12—C13 | 114.01 (8) |
O5—C2—C3 | 106.11 (9) | O11—C12—HC12 | 108.2 (10) |
C1—C2—C3 | 115.44 (9) | C11—C12—HC12 | 105.9 (10) |
O5—C2—HC2 | 107.9 (12) | C13—C12—HC12 | 112.7 (10) |
C1—C2—HC2 | 106.3 (12) | O12—C13—C12 | 112.06 (9) |
C3—C2—HC2 | 111.3 (12) | O12—C13—C14 | 107.29 (9) |
O6—C3—C2 | 106.99 (10) | C12—C13—C14 | 103.17 (8) |
O6—C3—C4 | 111.17 (9) | O12—C13—HC13 | 110.6 (11) |
C2—C3—C4 | 102.48 (10) | C12—C13—HC13 | 112.3 (10) |
O6—C3—HC3 | 111.7 (12) | C14—C13—HC13 | 111.1 (11) |
C2—C3—HC3 | 112.8 (12) | C13—O12—HO12 | 102.7 (16) |
C4—C3—HC3 | 111.3 (12) | O13—C14—C13 | 113.55 (8) |
C3—O6—HO6 | 109.8 (12) | O13—C14—C15 | 112.79 (10) |
O7—C4—C3 | 113.11 (9) | C13—C14—C15 | 102.22 (9) |
O7—C4—C5 | 112.96 (9) | O13—C14—HC14 | 108.8 (12) |
C3—C4—C5 | 101.54 (11) | C13—C14—HC14 | 110.4 (11) |
O7—C4—HC4 | 109.3 (11) | C15—C14—HC14 | 108.9 (12) |
C3—C4—HC4 | 108.4 (11) | C14—O13—HO13 | 104.6 (14) |
C5—C4—HC4 | 111.3 (11) | O11—C15—N6 | 108.26 (9) |
C4—O7—HO7 | 113.0 (16) | O11—C15—C14 | 107.50 (10) |
O5—C5—N1 | 107.33 (8) | N6—C15—C14 | 111.30 (9) |
O5—C5—C4 | 106.98 (9) | O11—C15—HC15 | 106.4 (10) |
N1—C5—C4 | 113.55 (10) | N6—C15—HC15 | 107.1 (10) |
O5—C5—HC5 | 112.1 (12) | C14—C15—HC15 | 116.0 (10) |
N1—C5—HC5 | 106.5 (12) | C15—O11—C12 | 110.42 (9) |
C4—C5—HC5 | 110.5 (12) | C20—N6—C16 | 122.02 (9) |
C5—O5—C2 | 110.28 (8) | C20—N6—C15 | 116.82 (9) |
C6—N1—C10 | 106.23 (10) | C16—N6—C15 | 121.16 (7) |
C6—N1—C5 | 126.99 (8) | N6—C16—C17 | 119.53 (8) |
C10—N1—C5 | 126.78 (8) | N6—C16—HC16 | 112.9 (13) |
N2—C6—N1 | 127.35 (9) | C17—C16—HC16 | 127.5 (13) |
N2—C6—C9 | 126.83 (8) | C16—C17—C18 | 119.78 (10) |
N1—C6—C9 | 105.80 (9) | C16—C17—HC17 | 115.8 (13) |
C7—N2—C6 | 112.19 (10) | C18—C17—HC17 | 124.3 (13) |
N2—C7—N3 | 125.41 (9) | C17—C18—C19 | 119.31 (9) |
N2—C7—HC7 | 121.8 (13) | C17—C18—HC18 | 122.4 (12) |
N3—C7—HC7 | 112.6 (13) | C19—C18—HC18 | 118.3 (12) |
C7—N3—C8 | 123.37 (8) | C20—C19—C18 | 118.86 (8) |
C7—N3—HN3 | 113.8 (12) | C20—C19—C21 | 121.80 (9) |
C8—N3—HN3 | 122.8 (12) | C18—C19—C21 | 119.29 (9) |
N5—C8—N3 | 119.80 (8) | O14—C21—N7 | 123.24 (9) |
N5—C8—C9 | 126.39 (9) | O14—C21—C19 | 118.32 (10) |
N3—C8—C9 | 113.81 (9) | N7—C21—C19 | 118.44 (10) |
C8—N5—HN5A | 119.0 (14) | C21—N7—HN7A | 119.3 (15) |
C8—N5—HN5B | 121.3 (14) | C21—N7—HN7B | 123.5 (13) |
HN5A—N5—HN5B | 118.6 (19) | HN7A—N7—HN7B | 116 (2) |
N4—C9—C6 | 110.62 (8) | N6—C20—C19 | 120.48 (9) |
N4—C9—C8 | 131.16 (8) | N6—C20—HC20 | 112.8 (11) |
C6—C9—C8 | 118.22 (9) | C19—C20—HC20 | 126.7 (11) |
C10—N4—C9 | 104.11 (8) | HW1B—OW1—HW1A | 109.0 (19) |
N4—C10—N1 | 113.24 (9) | HW2A—OW2—HW2B | 104 (2) |
N4—C10—HC10 | 124.1 (11) | HW3A—OW3—HW3B | 107.1 (18) |
N1—C10—HC10 | 122.6 (11) | HW4A—OW4—HW4B | 103 (3) |
O9—P2—O8 | 120.34 (8) | | |
| | | |
P2—O1—P1—O3 | 160.9 (1) | C8—C9—N4—C10 | −179.33 (8) |
P2—O1—P1—O2 | 32.7 (1) | C9—N4—C10—N1 | −0.23 (9) |
P2—O1—P1—O4 | −84.3 (1) | C6—N1—C10—N4 | −0.43 (9) |
O3—P1—O4—C1 | −64.8 (1) | C5—N1—C10—N4 | −179.77 (7) |
O2—P1—O4—C1 | 64.1 (1) | P1—O1—P2—O9 | −87.7 (1) |
O1—P1—O4—C1 | −177.5 (1) | P1—O1—P2—O8 | 45.2 (1) |
P1—O4—C1—C2 | −147.2 (1) | P1—O1—P2—O10 | 160.9 (1) |
O4—C1—C2—O5 | −64.9 (1) | O9—P2—O10—C11 | 177.5 (1) |
O4—C1—C2—C3 | 54.81 (11) | O8—P2—O10—C11 | 44.3 (1) |
O5—C2—C3—O6 | −88.45 (10) | O1—P2—O10—C11 | −69.9 (1) |
C1—C2—C3—O6 | 149.92 (7) | P2—O10—C11—C12 | 170.2 (1) |
O5—C2—C3—C4 | 28.58 (8) | O10—C11—C12—O11 | −71.3 (1) |
C1—C2—C3—C4 | −93.06 (10) | O10—C11—C12—C13 | 48.1 (1) |
O6—C3—C4—O7 | −41.97 (10) | O11—C12—C13—O12 | −94.00 (11) |
C2—C3—C4—O7 | −155.96 (7) | C11—C12—C13—O12 | 145.48 (8) |
O6—C3—C4—C5 | 79.36 (10) | O11—C12—C13—C14 | 21.10 (8) |
C2—C3—C4—C5 | −34.63 (8) | C11—C12—C13—C14 | −99.42 (9) |
O7—C4—C5—O5 | 151.39 (7) | O12—C13—C14—O13 | −32.88 (9) |
C3—C4—C5—O5 | 29.95 (7) | C12—C13—C14—O13 | −151.36 (7) |
O7—C4—C5—N1 | −90.40 (9) | O12—C13—C14—C15 | 88.89 (10) |
C3—C4—C5—N1 | 148.17 (7) | C12—C13—C14—C15 | −29.58 (8) |
N1—C5—O5—C2 | −134.87 (9) | O13—C14—C15—O11 | 151.64 (7) |
C4—C5—O5—C2 | −12.67 (7) | C13—C14—C15—O11 | 29.34 (8) |
C1—C2—O5—C5 | 115.11 (9) | O13—C14—C15—N6 | −89.96 (10) |
C3—C2—O5—C5 | −10.19 (7) | C13—C14—C15—N6 | 147.74 (7) |
O5—C5—N1—C6 | −144.2 (1) | N6—C15—O11—C12 | −137.18 (8) |
C4—C5—N1—C6 | 97.79 (11) | C14—C15—O11—C12 | −16.83 (8) |
O5—C5—N1—C10 | 35.01 (11) | C11—C12—O11—C15 | 120.80 (9) |
C4—C5—N1—C10 | −83.00 (11) | C13—C12—O11—C15 | −2.90 (8) |
C10—N1—C6—N2 | −177.65 (8) | O11—C15—N6—C20 | −150.33 (7) |
C5—N1—C6—N2 | 1.68 (13) | C14—C15—N6—C20 | 91.73 (12) |
C10—N1—C6—C9 | 0.89 (8) | O11—C15—N6—C16 | 29.43 (10) |
C5—N1—C6—C9 | −179.77 (7) | C14—C15—N6—C16 | −88.52 (12) |
N1—C6—N2—C7 | −178.19 (8) | C20—N6—C16—C17 | −0.65 (12) |
C9—C6—N2—C7 | 3.6 (1) | C15—N6—C16—C17 | 179.61 (7) |
C6—N2—C7—N3 | −0.97 (13) | N6—C16—C17—C18 | 1.18 (13) |
N2—C7—N3—C8 | −2.83 (14) | C16—C17—C18—C19 | −0.33 (13) |
C7—N3—C8—N5 | −176.85 (8) | C17—C18—C19—C20 | −1.04 (12) |
C7—N3—C8—C9 | 3.86 (11) | C17—C18—C19—C21 | 176.32 (8) |
N2—C6—C9—N4 | 177.47 (8) | C20—C19—C21—O14 | −170.77 (8) |
N1—C6—C9—N4 | −1.09 (9) | C18—C19—C21—O14 | 11.95 (12) |
N2—C6—C9—C8 | −2.4 (1) | C20—C19—C21—N7 | 9.6 (1) |
N1—C6—C9—C8 | 179.04 (7) | C18—C19—C21—N7 | −167.67 (8) |
N5—C8—C9—N4 | −0.49 (14) | C16—N6—C20—C19 | −0.76 (12) |
N3—C8—C9—N4 | 178.74 (8) | C15—N6—C20—C19 | 178.99 (7) |
N5—C8—C9—C6 | 179.35 (8) | C18—C19—C20—N6 | 1.59 (11) |
N3—C8—C9—C6 | −1.42 (10) | C21—C19—C20—N6 | −175.69 (7) |
C6—C9—N4—C10 | 0.82 (8) | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O6—HO6···N4i | 0.83 (2) | 1.99 (2) | 2.764 (3) | 154 (2) |
O7—HO7···OW3 | 0.86 (2) | 1.86 (2) | 2.693 (3) | 161 (2) |
O12—HO12···O14ii | 0.86 (2) | 1.90 (2) | 2.719 (2) | 161 (2) |
O13—HO13···O12 | 0.86 (2) | 2.05 (2) | 2.629 (3) | 124 (2) |
O13—HO13···O6iii | 0.86 (2) | 2.20 (2) | 2.905 (3) | 139 (2) |
N3—HN3···O2iv | 0.91 (2) | 1.72 (2) | 2.615 (2) | 165 (2) |
N5—HN5A···O3iv | 0.86 (2) | 1.99 (2) | 2.830 (3) | 166 (2) |
N5—HN5B···O7v | 0.89 (2) | 1.97 (2) | 2.823 (2) | 159 (2) |
N7—HN7A···OW2vi | 0.92 (2) | 2.06 (2) | 2.971 (2) | 174 (2) |
N7—HN7B···O9v | 0.91 (2) | 1.92 (2) | 2.815 (3) | 171 (2) |
OW1—HW1A···O3 | 0.94 (1) | 1.87 (1) | 2.790 (3) | 164 (2) |
OW1—HW1B···N2vii | 0.94 (1) | 2.04 (1) | 2.975 (3) | 176 (2) |
OW2—HW2A···OW1viii | 0.95 (1) | 1.86 (1) | 2.806 (3) | 175 (3) |
OW2—HW2B···O6ix | 0.93 (1) | 1.95 (1) | 2.877 (3) | 175 (2) |
OW3—HW3A···OW2 | 0.94 (1) | 2.02 (1) | 2.947 (3) | 168 (2) |
OW3—HW3B···O8 | 0.94 (1) | 1.82 (1) | 2.746 (3) | 168 (2) |
OW4—HW4A···O3 | 0.95 (1) | 1.95 (1) | 2.900 (4) | 173 (2) |
OW4—HW4B···O13x | 0.97 (1) | 1.81 (1) | 2.773 (3) | 172 (4) |
Symmetry codes: (i) x, y−1, z; (ii) x, y, z+1; (iii) x−1, y+1, z; (iv) x, y+1, z+1; (v) x, y+1, z; (vi) x, y+1, z−1; (vii) x, y, z−1; (viii) x−1, y, z+1; (ix) x−1, y, z; (x) x+1, y, z. |