Key indicators
- Single-crystal X-ray study
- T = 295 K
- Mean (C-C) = 0.005 Å
- R factor = 0.041
- wR factor = 0.130
- Data-to-parameter ratio = 16.0
checkCIF/PLATON results
No syntax errors found
Alert level B
PLAT731_ALERT_1_B Bond Calc 0.85(5), Rep 0.850(10) ...... 5.00 su-Rat
O3W -H3W2 1.555 1.555
PLAT731_ALERT_1_B Bond Calc 0.85(5), Rep 0.850(10) ...... 5.00 su-Rat
O4W -H4W1 1.555 1.555
PLAT731_ALERT_1_B Bond Calc 0.86(6), Rep 0.850(10) ...... 6.00 su-Rat
O4W -H4W2 1.555 1.555
PLAT731_ALERT_1_B Bond Calc 0.85(5), Rep 0.850(10) ...... 5.00 su-Rat
O7W -H7W1 1.555 1.555
PLAT731_ALERT_1_B Bond Calc 0.85(5), Rep 0.850(10) ...... 5.00 su-Rat
O8W -H8W2 1.555 1.555
PLAT735_ALERT_1_B D-H Calc 0.85(5), Rep 0.850(10) ...... 5.00 su-Rat
O3W -H4# 1.555 1.555
PLAT735_ALERT_1_B D-H Calc 0.85(5), Rep 0.850(10) ...... 5.00 su-Rat
O4W -H5# 1.555 1.555
PLAT735_ALERT_1_B D-H Calc 0.86(6), Rep 0.850(10) ...... 6.00 su-Rat
O4W -H6# 1.555 1.555
PLAT735_ALERT_1_B D-H Calc 0.85(5), Rep 0.850(10) ...... 5.00 su-Rat
O7W -H9# 1.555 1.555
PLAT735_ALERT_1_B D-H Calc 0.85(5), Rep 0.850(10) ...... 5.00 su-Rat
O8W -H12# 1.555 1.555
PLAT736_ALERT_1_B H...A Calc 1.91(5), Rep 1.910(10) ...... 5.00 su-Rat
H4# -O3 1.555 1.455
PLAT736_ALERT_1_B H...A Calc 1.92(6), Rep 1.930(10) ...... 6.00 su-Rat
H6# -O8 1.555 3.666
PLAT736_ALERT_1_B H...A Calc 1.95(5), Rep 1.960(10) ...... 5.00 su-Rat
H12# -O6 1.555 3.766
Alert level C
ABSTM02_ALERT_3_C The ratio of expected to reported Tmax/Tmin(RR') is < 0.90
Tmin and Tmax reported: 0.556 0.703
Tmin(prime) and Tmax expected: 0.603 0.685
RR(prime) = 0.897
Please check that your absorption correction is appropriate.
PLAT042_ALERT_1_C Calc. and Rep. MoietyFormula Strings Differ .... ?
PLAT061_ALERT_3_C Tmax/Tmin Range Test RR' too Large ............. 0.88
PLAT062_ALERT_4_C Rescale T(min) & T(max) by ..................... 0.97
PLAT152_ALERT_1_C Supplied and Calc Volume s.u. Inconsistent ..... ?
PLAT244_ALERT_4_C Low 'Solvent' Ueq as Compared to Neighbors for Cd1
PLAT244_ALERT_4_C Low 'Solvent' Ueq as Compared to Neighbors for Cd2
PLAT720_ALERT_4_C Number of Unusual/Non-Standard Label(s) ........ 13
PLAT731_ALERT_1_C Bond Calc 0.85(4), Rep 0.850(10) ...... 4.00 su-Rat
O1W -H1W1 1.555 1.555
PLAT731_ALERT_1_C Bond Calc 0.84(3), Rep 0.840(10) ...... 3.00 su-Rat
O2W -H2W1 1.555 1.555
PLAT731_ALERT_1_C Bond Calc 0.85(4), Rep 0.850(10) ...... 4.00 su-Rat
O3W -H3W1 1.555 1.555
PLAT731_ALERT_1_C Bond Calc 0.85(4), Rep 0.850(10) ...... 4.00 su-Rat
O5W -H5W1 1.555 1.555
PLAT731_ALERT_1_C Bond Calc 0.85(4), Rep 0.850(10) ...... 4.00 su-Rat
O6W -H6W1 1.555 1.555
PLAT731_ALERT_1_C Bond Calc 0.85(4), Rep 0.850(10) ...... 4.00 su-Rat
O7W -H7W2 1.555 1.555
PLAT731_ALERT_1_C Bond Calc 0.85(4), Rep 0.850(10) ...... 4.00 su-Rat
O8W -H8W1 1.555 1.555
PLAT731_ALERT_1_C Bond Calc 0.85(3), Rep 0.860(10) ...... 3.00 su-Rat
O9W -H9W1 1.555 1.555
PLAT732_ALERT_1_C Angle Calc 125(4), Rep 125.0(10) ...... 4.00 su-Rat
CD1 -O1W -H1W1 1.555 1.555 1.555
PLAT732_ALERT_1_C Angle Calc 109(6), Rep 109(2) ...... 3.00 su-Rat
H4W1 -O4W -H4W2 1.555 1.555 1.555
PLAT732_ALERT_1_C Angle Calc 125(4), Rep 125.0(10) ...... 4.00 su-Rat
CD2 -O5W -H5W1 1.555 1.555 1.555
PLAT732_ALERT_1_C Angle Calc 125(4), Rep 125.0(10) ...... 4.00 su-Rat
CD2 -O6W -H6W1 1.555 1.555 1.555
PLAT735_ALERT_1_C D-H Calc 0.85(4), Rep 0.850(10) ...... 4.00 su-Rat
O1W -H1# 1.555 1.555
PLAT735_ALERT_1_C D-H Calc 0.84(3), Rep 0.840(10) ...... 3.00 su-Rat
O2W -H2# 1.555 1.555
PLAT735_ALERT_1_C D-H Calc 0.85(4), Rep 0.850(10) ...... 4.00 su-Rat
O3W -H3# 1.555 1.555
PLAT735_ALERT_1_C D-H Calc 0.85(4), Rep 0.850(10) ...... 4.00 su-Rat
O5W -H7# 1.555 1.555
PLAT735_ALERT_1_C D-H Calc 0.85(4), Rep 0.850(10) ...... 4.00 su-Rat
O6W -H8# 1.555 1.555
PLAT735_ALERT_1_C D-H Calc 0.85(4), Rep 0.850(10) ...... 4.00 su-Rat
O7W -H10# 1.555 1.555
PLAT735_ALERT_1_C D-H Calc 0.85(4), Rep 0.850(10) ...... 4.00 su-Rat
O8W -H11# 1.555 1.555
PLAT735_ALERT_1_C D-H Calc 0.85(3), Rep 0.860(10) ...... 3.00 su-Rat
O9W -H13# 1.555 1.555
PLAT736_ALERT_1_C H...A Calc 1.92(3), Rep 1.920(10) ...... 3.00 su-Rat
H1# -O6 1.555 3.666
PLAT736_ALERT_1_C H...A Calc 1.97(4), Rep 1.970(10) ...... 4.00 su-Rat
H3# -O8 1.555 1.555
PLAT736_ALERT_1_C H...A Calc 1.91(5), Rep 1.91(2) ...... 2.50 su-Rat
H5# -O4 1.555 3.766
PLAT736_ALERT_1_C H...A Calc 1.97(3), Rep 1.980(10) ...... 3.00 su-Rat
H7# -O4 1.555 3.766
PLAT736_ALERT_1_C H...A Calc 1.94(3), Rep 1.940(10) ...... 3.00 su-Rat
H8# -O3 1.555 1.555
PLAT736_ALERT_1_C H...A Calc 1.93(4), Rep 1.930(10) ...... 4.00 su-Rat
H10# -O5 1.555 1.555
PLAT736_ALERT_1_C H...A Calc 1.96(5), Rep 1.96(2) ...... 2.50 su-Rat
H9# -O7 1.555 1.555
PLAT736_ALERT_1_C H...A Calc 1.94(4), Rep 1.940(10) ...... 4.00 su-Rat
H11# -O5 1.555 3.766
PLAT790_ALERT_4_C Centre of Gravity not Within Unit Cell: Resd. # 4
H2 O
0 ALERT level A = In general: serious problem
13 ALERT level B = Potentially serious problem
37 ALERT level C = Check and explain
0 ALERT level G = General alerts; check
43 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
0 ALERT type 2 Indicator that the structure model may be wrong or deficient
2 ALERT type 3 Indicator that the structure quality may be low
5 ALERT type 4 Improvement, methodology, query or suggestion
Tetrasodium p-sulfonatocalix[4]arene (Gao et al., 2003; Iki et al., 1998) (0.18 g, 0.2 mmol) was dissolved in water (10 ml) and cadmium nitrate (0.08 g, 0.4 mmol) was added to the solution. The filtered solution was set aside for several days resulting in the growth of colourless plates of (I).
The C-bound H atoms were positioned geometrically (C—H = 0.93 Å) and were included in the refinement in the riding-model approximation, with Uiso(H) = 1.2Ueq(C). The water H atoms were located in difference maps and were refined with the distance restraints O—H = 0.85 (1) Å and H···H = 1.39 (1) Å, and with Uiso(H) = 1.2Ueq(O). The two hydroxy H atoms of the anion are disordered over two positions. Two H-atom sites (H11 and H12 attached to O1 and H21 and H22 attached to O2), each of 50% occupancy, were generated for each O atom in idealized positions (O—H = 0.85 Å) and refined as riding with Uiso(H) = 1.2Ueq(O). This arrangment for the two orientations of the hydroxy groups leads to the formation of either a clockwise or an anticlockwise ring of O—H···O hydrogen bonds (Fig. 2 and Table 2). The deepest difference hole is 0.65 Å from atom Cd1 and the highest difference peak is 2.77 Å from atom H8, in a possible solvent-accessible void. Attempts to refine the electron density as an O atom were unsuccessful.
Data collection: SMART (Bruker, 2003); cell refinement: SAINT (Bruker, 2003); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEPII (Johnson, 1976); software used to prepare material for publication: SHELXL97.
Bis[hexaaquacadmium(II)] 25,26,27,28-tetrahydroxy-2,8,14,19-tetrathiacalix[4]arene-5,11,17,23- tetrasulfonate monohydrate clathrate
top
Crystal data top
[Cd(H2O)6]2(C24H2O16S8)·H2O | F(000) = 1276 |
Mr = 1271.82 | Dx = 1.868 Mg m−3 |
Monoclinic, P21/m | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yb | Cell parameters from 8025 reflections |
a = 13.1183 (5) Å | θ = 2.8–28.4° |
b = 14.2581 (6) Å | µ = 1.40 mm−1 |
c = 13.1854 (5) Å | T = 295 K |
β = 113.563 (1)° | Block, colorless |
V = 2260.6 (2) Å3 | 0.35 × 0.33 × 0.27 mm |
Z = 2 | |
Data collection top
Bruker APEX2 area-detector diffractometer | 5380 independent reflections |
Radiation source: fine-focus sealed tube | 5106 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.019 |
ϕ and ω scans | θmax = 27.5°, θmin = 2.3° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −17→17 |
Tmin = 0.556, Tmax = 0.703 | k = −18→18 |
19302 measured reflections | l = −17→17 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.041 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.130 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.11 | w = 1/[σ2(Fo2) + (0.0599P)2 + 6.3407P] where P = (Fo2 + 2Fc2)/3 |
5380 reflections | (Δ/σ)max = 0.001 |
337 parameters | Δρmax = 1.76 e Å−3 |
22 restraints | Δρmin = −1.74 e Å−3 |
Crystal data top
[Cd(H2O)6]2(C24H2O16S8)·H2O | V = 2260.6 (2) Å3 |
Mr = 1271.82 | Z = 2 |
Monoclinic, P21/m | Mo Kα radiation |
a = 13.1183 (5) Å | µ = 1.40 mm−1 |
b = 14.2581 (6) Å | T = 295 K |
c = 13.1854 (5) Å | 0.35 × 0.33 × 0.27 mm |
β = 113.563 (1)° | |
Data collection top
Bruker APEX2 area-detector diffractometer | 5380 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 5106 reflections with I > 2σ(I) |
Tmin = 0.556, Tmax = 0.703 | Rint = 0.019 |
19302 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.041 | 22 restraints |
wR(F2) = 0.130 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.11 | Δρmax = 1.76 e Å−3 |
5380 reflections | Δρmin = −1.74 e Å−3 |
337 parameters | |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | Occ. (<1) |
Cd1 | 0.47481 (3) | 0.7500 | 0.44903 (4) | 0.0371 (1) | |
Cd2 | 0.99024 (3) | 0.7500 | 0.48290 (4) | 0.0402 (1) | |
S1 | 1.12673 (7) | 0.49239 (6) | 0.33671 (7) | 0.0298 (2) | |
S2 | 1.04713 (12) | 0.2500 | −0.0102 (1) | 0.0386 (3) | |
S3 | 0.73831 (7) | 0.52185 (8) | −0.03325 (8) | 0.0408 (2) | |
S4 | 0.43955 (10) | 0.2500 | −0.0273 (1) | 0.0363 (3) | |
S5 | 0.62754 (7) | 0.48790 (6) | 0.32418 (7) | 0.03002 (19) | |
O1 | 0.8270 (2) | 0.3504 (3) | −0.1018 (2) | 0.0509 (8) | |
O2 | 0.5892 (3) | 0.3531 (2) | −0.1125 (2) | 0.0461 (7) | |
O3 | 1.1734 (2) | 0.5838 (2) | 0.3294 (3) | 0.0422 (6) | |
O4 | 1.2104 (2) | 0.4194 (2) | 0.3828 (2) | 0.0399 (6) | |
O5 | 1.0520 (2) | 0.4983 (2) | 0.3944 (2) | 0.0410 (6) | |
O6 | 0.7017 (2) | 0.4178 (2) | 0.3976 (2) | 0.0397 (6) | |
O7 | 0.6779 (2) | 0.5810 (2) | 0.3416 (3) | 0.0421 (6) | |
O8 | 0.5180 (2) | 0.4868 (2) | 0.3282 (3) | 0.0414 (6) | |
O1w | 0.3633 (5) | 0.7500 | 0.5411 (7) | 0.075 (2) | |
O2w | 0.5880 (6) | 0.7500 | 0.3588 (7) | 0.082 (2) | |
O3w | 0.3760 (3) | 0.6346 (2) | 0.3296 (3) | 0.0499 (8) | |
O4w | 0.5741 (3) | 0.6351 (3) | 0.5675 (4) | 0.078 (1) | |
O5w | 0.8631 (5) | 0.7500 | 0.5598 (7) | 0.077 (2) | |
O6w | 1.1035 (6) | 0.7500 | 0.3926 (7) | 0.079 (2) | |
O7w | 0.8917 (3) | 0.6326 (2) | 0.3690 (3) | 0.0556 (8) | |
O8w | 1.0974 (3) | 0.6417 (2) | 0.6080 (3) | 0.0504 (8) | |
O9w | 1.1889 (18) | 0.7500 | 0.8388 (10) | 0.184 (5) | |
C1 | 1.0427 (3) | 0.4555 (3) | 0.2005 (3) | 0.0311 (7) | |
C2 | 1.0746 (3) | 0.3801 (3) | 0.1536 (3) | 0.0314 (7) | |
C3 | 1.0040 (3) | 0.3460 (3) | 0.0501 (3) | 0.0323 (7) | |
C4 | 0.8993 (3) | 0.3876 (3) | −0.0058 (3) | 0.0347 (8) | |
C5 | 0.8698 (3) | 0.4668 (3) | 0.0398 (3) | 0.0342 (8) | |
C6 | 0.9418 (3) | 0.5007 (3) | 0.1423 (3) | 0.0345 (8) | |
C7 | 0.6085 (3) | 0.4536 (2) | 0.1891 (3) | 0.0292 (7) | |
C8 | 0.5393 (3) | 0.3784 (2) | 0.1392 (3) | 0.0296 (7) | |
C9 | 0.5307 (3) | 0.3452 (3) | 0.0371 (3) | 0.0309 (7) | |
C10 | 0.5935 (3) | 0.3876 (3) | −0.0159 (3) | 0.0331 (7) | |
C11 | 0.6604 (3) | 0.4651 (3) | 0.0336 (3) | 0.0321 (7) | |
C12 | 0.6670 (3) | 0.4979 (2) | 0.1354 (3) | 0.0319 (7) | |
H1w1 | 0.339 (5) | 0.7013 (4) | 0.561 (5) | 0.090* | |
H2w1 | 0.624 (3) | 0.7012 (4) | 0.358 (6) | 0.099* | |
H3w1 | 0.416 (3) | 0.589 (2) | 0.327 (5) | 0.060* | |
H3w2 | 0.317 (3) | 0.615 (3) | 0.335 (5) | 0.060* | |
H4w1 | 0.638 (3) | 0.617 (4) | 0.573 (6) | 0.093* | |
H4w2 | 0.547 (5) | 0.594 (3) | 0.597 (6) | 0.093* | |
H5w1 | 0.834 (4) | 0.7012 (4) | 0.574 (6) | 0.093* | |
H6w1 | 1.124 (5) | 0.7012 (4) | 0.369 (5) | 0.094* | |
H7w1 | 0.833 (3) | 0.614 (3) | 0.376 (5) | 0.067* | |
H7w2 | 0.934 (3) | 0.586 (2) | 0.375 (5) | 0.067* | |
H8w1 | 1.052 (3) | 0.598 (2) | 0.605 (5) | 0.060* | |
H8w2 | 1.154 (3) | 0.618 (3) | 0.601 (5) | 0.060* | |
H9w1 | 1.176 (12) | 0.7013 (4) | 0.798 (2) | 0.221* | |
H2 | 1.1435 | 0.3521 | 0.1913 | 0.038* | |
H6 | 0.9227 | 0.5536 | 0.1720 | 0.041* | |
H8 | 0.4985 | 0.3502 | 0.1745 | 0.036* | |
H121 | 0.7109 | 0.5498 | 0.1677 | 0.038* | |
H11 | 0.8449 | 0.3019 | −0.1284 | 0.061* | 0.50 |
H12 | 0.7636 | 0.3756 | −0.1356 | 0.061* | 0.50 |
H21 | 0.6273 | 0.3785 | −0.1442 | 0.055* | 0.50 |
H22 | 0.5484 | 0.3060 | −0.1419 | 0.055* | 0.50 |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Cd1 | 0.0303 (2) | 0.0309 (2) | 0.0554 (3) | 0.000 | 0.02266 (18) | 0.000 |
Cd2 | 0.0288 (2) | 0.0337 (2) | 0.0603 (3) | 0.000 | 0.02012 (18) | 0.000 |
S1 | 0.0252 (4) | 0.0308 (4) | 0.0354 (4) | 0.0003 (3) | 0.0143 (3) | 0.0017 (3) |
S2 | 0.0415 (7) | 0.0496 (8) | 0.0348 (6) | 0.000 | 0.0260 (6) | 0.000 |
S3 | 0.0312 (4) | 0.0483 (6) | 0.0437 (5) | 0.0083 (4) | 0.0160 (4) | 0.0262 (4) |
S4 | 0.0241 (6) | 0.0410 (7) | 0.0364 (6) | 0.000 | 0.0045 (5) | 0.000 |
S5 | 0.0285 (4) | 0.0265 (4) | 0.0371 (4) | 0.0023 (3) | 0.0153 (3) | 0.0005 (3) |
O1 | 0.042 (2) | 0.071 (2) | 0.031 (1) | 0.001 (2) | 0.006 (1) | 0.004 (1) |
O2 | 0.051 (2) | 0.055 (2) | 0.035 (1) | −0.006 (1) | 0.021 (1) | −0.001 (1) |
O3 | 0.043 (2) | 0.035 (1) | 0.053 (2) | −0.008 (1) | 0.024 (1) | −0.001 (1) |
O4 | 0.032 (1) | 0.041 (2) | 0.042 (1) | 0.008 (1) | 0.010 (1) | 0.001 (1) |
O5 | 0.036 (1) | 0.050 (2) | 0.044 (2) | 0.000 (1) | 0.024 (1) | 0.001 (1) |
O6 | 0.040 (1) | 0.038 (1) | 0.039 (1) | 0.007 (1) | 0.014 (1) | 0.006 (1) |
O7 | 0.043 (2) | 0.029 (1) | 0.056 (2) | −0.003 (1) | 0.023 (1) | −0.006 (1) |
O8 | 0.037 (1) | 0.045 (2) | 0.051 (2) | 0.004 (1) | 0.026 (1) | 0.000 (1) |
O1w | 0.090 (4) | 0.036 (2) | 0.15 (6) | 0.000 | 0.095 (4) | 0.000 |
O2w | 0.100 (5) | 0.029 (2) | 0.172 (7) | 0.000 | 0.112 (5) | 0.000 |
O3w | 0.038 (2) | 0.038 (2) | 0.078 (2) | −0.005 (1) | 0.029 (2) | −0.009 (2) |
O4w | 0.049 (2) | 0.083 (3) | 0.116 (3) | 0.030 (2) | 0.048 (2) | 0.057 (3) |
O5w | 0.088 (4) | 0.037 (2) | 0.150 (6) | 0.000 | 0.093 (4) | 0.000 |
O6w | 0.097 (4) | 0.039 (3) | 0.144 (6) | 0.000 | 0.095 (5) | 0.000 |
O7w | 0.036 (2) | 0.047 (2) | 0.082 (2) | −0.003 (1) | 0.021 (2) | −0.011 (2) |
O8w | 0.040 (2) | 0.039 (2) | 0.076 (2) | 0.004 (1) | 0.027 (2) | 0.009 (2) |
O9w | 0.27 (2) | 0.15 (1) | 0.15 (1) | 0.000 | 0.10 (1) | 0.000 |
C1 | 0.026 (2) | 0.033 (2) | 0.035 (2) | 0.000 (1) | 0.014 (1) | 0.007 (1) |
C2 | 0.026 (2) | 0.035 (2) | 0.035 (2) | 0.002 (1) | 0.013 (1) | 0.007 (1) |
C3 | 0.034 (2) | 0.038 (2) | 0.032 (2) | 0.001 (1) | 0.020 (1) | 0.007 (1) |
C4 | 0.033 (2) | 0.045 (2) | 0.028 (2) | −0.002 (2) | 0.014 (1) | 0.012 (2) |
C5 | 0.027 (2) | 0.040 (2) | 0.039 (2) | 0.004 (1) | 0.016 (1) | 0.018 (2) |
C6 | 0.030 (2) | 0.034 (2) | 0.043 (2) | 0.003 (1) | 0.018 (2) | 0.008 (2) |
C7 | 0.025 (2) | 0.028 (2) | 0.034 (2) | 0.005 (1) | 0.012 (1) | 0.006 (1) |
C8 | 0.027 (2) | 0.030 (2) | 0.034 (2) | 0.003 (1) | 0.014 (1) | 0.006 (1) |
C9 | 0.024 (2) | 0.033 (2) | 0.033 (2) | 0.004 (1) | 0.008 (1) | 0.005 (1) |
C10 | 0.028 (2) | 0.040 (2) | 0.029 (2) | 0.009 (1) | 0.009 (1) | 0.009 (1) |
C11 | 0.025 (2) | 0.036 (2) | 0.038 (2) | 0.007 (1) | 0.014 (1) | 0.017 (2) |
C12 | 0.025 (2) | 0.030 (2) | 0.040 (2) | 0.003 (1) | 0.012 (1) | 0.008 (1) |
Geometric parameters (Å, º) top
Cd1—O1w | 2.243 (5) | C3—C4 | 1.405 (5) |
Cd1—O2w | 2.243 (5) | C4—C5 | 1.404 (6) |
Cd1—O3w | 2.288 (3) | C5—C6 | 1.390 (6) |
Cd1—O3wi | 2.288 (3) | C7—C12 | 1.386 (5) |
Cd1—O4w | 2.279 (4) | C7—C8 | 1.388 (5) |
Cd1—O4wi | 2.279 (4) | C8—C9 | 1.388 (5) |
Cd2—O5w | 2.272 (5) | C9—C10 | 1.411 (5) |
Cd2—O6w | 2.245 (5) | C10—C11 | 1.401 (5) |
Cd2—O7w | 2.275 (3) | C11—C12 | 1.391 (5) |
Cd2—O7wi | 2.275 (3) | O1—H11 | 0.85 |
Cd2—O8w | 2.287 (3) | O1—H12 | 0.85 |
Cd2—O8wi | 2.287 (3) | O2—H21 | 0.85 |
S1—O4 | 1.458 (3) | O2—H22 | 0.85 |
S1—O3 | 1.459 (3) | O1w—H1w1 | 0.85 (1) |
S1—O5 | 1.464 (3) | O2w—H2w1 | 0.84 (1) |
S1—C1 | 1.770 (4) | O3w—H3w1 | 0.85 (1) |
S2—C3 | 1.785 (4) | O3w—H3w2 | 0.85 (1) |
S2—C3ii | 1.785 (4) | O4w—H4w1 | 0.85 (1) |
S3—C5 | 1.786 (4) | O4w—H4w2 | 0.85 (1) |
S3—C11 | 1.788 (3) | O5w—H5w1 | 0.85 (1) |
S4—C9 | 1.784 (4) | O6w—H6w1 | 0.85 (1) |
S4—C9ii | 1.784 (4) | O7w—H7w1 | 0.85 (1) |
S5—O6 | 1.459 (3) | O7w—H7w2 | 0.85 (1) |
S5—O7 | 1.459 (3) | O8w—H8w1 | 0.85 (1) |
S5—O8 | 1.459 (3) | O8w—H8w2 | 0.85 (1) |
S5—C7 | 1.767 (4) | O9w—H9w1 | 0.86 (1) |
O1—C4 | 1.349 (5) | C2—H2 | 0.93 |
O2—C10 | 1.346 (5) | C6—H6 | 0.93 |
C1—C6 | 1.394 (5) | C8—H8 | 0.93 |
C1—C2 | 1.386 (5) | C12—H121 | 0.93 |
C2—C3 | 1.394 (5) | | |
| | | |
O1w—Cd1—O2w | 179.3 (3) | O1—C4—C3 | 120.0 (4) |
O1w—Cd1—O3w | 93.4 (2) | O1—C4—C5 | 120.4 (3) |
O1w—Cd1—O3wi | 93.4 (2) | C3—C4—C5 | 119.6 (3) |
O1w—Cd1—O4w | 87.0 (2) | C6—C5—C4 | 119.9 (3) |
O1w—Cd1—O4wi | 87.0 (2) | C6—C5—S3 | 120.4 (3) |
O2w—Cd1—O3w | 87.0 (2) | C4—C5—S3 | 119.6 (3) |
O2w—Cd1—O3wi | 87.0 (2) | C5—C6—C1 | 120.1 (4) |
O2w—Cd1—O4w | 92.6 (2) | C12—C7—C8 | 120.1 (3) |
O2w—Cd1—O4wi | 92.6 (2) | C12—C7—S5 | 120.3 (3) |
O3w—Cd1—O3wi | 92.0 (2) | C8—C7—S5 | 119.6 (3) |
O3w—Cd1—O4w | 88.1 (2) | C9—C8—C7 | 120.4 (3) |
O3w—Cd1—O4wi | 179.6 (1) | C8—C9—C10 | 119.8 (3) |
O3wi—Cd1—O4w | 179.6 (1) | C8—C9—S4 | 120.0 (3) |
O3wi—Cd1—O4wi | 88.1 (2) | C10—C9—S4 | 120.2 (3) |
O4w—Cd1—O4wi | 91.9 (3) | O2—C10—C11 | 120.7 (3) |
O5w—Cd2—O6w | 175.1 (3) | O2—C10—C9 | 120.1 (3) |
O5w—Cd2—O7w | 88.3 (2) | C11—C10—C9 | 119.2 (3) |
O5w—Cd2—O7wi | 88.3 (2) | C12—C11—C10 | 120.0 (3) |
O5w—Cd2—O8w | 91.5 (2) | C12—C11—S3 | 119.8 (3) |
O5w—Cd2—O8wi | 91.5 (2) | C10—C11—S3 | 120.2 (3) |
O6w—Cd2—O7w | 88.4 (2) | C11—C12—C7 | 120.4 (3) |
O6w—Cd2—O7wi | 88.4 (2) | C4—O1—H11 | 120.0 |
O6w—Cd2—O8w | 92.1 (2) | C4—O1—H12 | 120.0 |
O6w—Cd2—O8wi | 92.1 (2) | H11—O1—H12 | 120.0 |
O7w—Cd2—O7wi | 94.7 (2) | C10—O2—H21 | 120.0 |
O7w—Cd2—O8w | 90.2 (1) | C10—O2—H22 | 120.0 |
O7w—Cd2—O8wi | 175.1 (1) | H21—O2—H22 | 120.0 |
O7wi—Cd2—O8w | 175.1 (1) | Cd1—O1w—H1w1 | 125 (1) |
O7wi—Cd2—O8wi | 90.2 (1) | Cd1—O2w—H2w1 | 120 (3) |
O8w—Cd2—O8wi | 85.0 (2) | Cd1—O3w—H3w1 | 113 (3) |
O4—S1—O3 | 113.5 (2) | Cd1—O3w—H3w2 | 117 (4) |
O4—S1—O5 | 111.9 (2) | H3w1—O3w—H3w2 | 110 (2) |
O3—S1—O5 | 111.6 (2) | Cd1—O4w—H4w1 | 123 (4) |
O4—S1—C1 | 105.7 (2) | Cd1—O4w—H4w2 | 125 (4) |
O3—S1—C1 | 107.8 (2) | H4w1—O4w—H4w2 | 109 (2) |
O5—S1—C1 | 105.6 (2) | Cd2—O5w—H5w1 | 125 (1) |
C3—S2—C3ii | 100.2 (2) | Cd2—O6w—H6w1 | 125 (1) |
C5—S3—C11 | 98.9 (2) | Cd2—O7w—H7w1 | 117 (4) |
C9—S4—C9ii | 99.1 (2) | Cd2—O7w—H7w2 | 110 (4) |
O6—S5—O7 | 112.3 (2) | H7w1—O7w—H7w2 | 109 (2) |
O6—S5—O8 | 111.9 (2) | Cd2—O8w—H8w1 | 104 (4) |
O7—S5—O8 | 113.2 (2) | Cd2—O8w—H8w2 | 120 (4) |
O6—S5—C7 | 105.5 (2) | H8w1—O8w—H8w2 | 110 (2) |
O7—S5—C7 | 106.4 (2) | C1—C2—H2 | 119.8 |
O8—S5—C7 | 106.8 (2) | C3—C2—H2 | 119.8 |
C6—C1—C2 | 120.1 (3) | C5—C6—H6 | 119.9 |
C6—C1—S1 | 119.4 (3) | C1—C6—H6 | 119.9 |
C2—C1—S1 | 120.4 (3) | C9—C8—H8 | 119.8 |
C1—C2—C3 | 120.5 (3) | C7—C8—H8 | 119.8 |
C2—C3—C4 | 119.6 (3) | C11—C12—H121 | 119.8 |
C2—C3—S2 | 119.9 (3) | C7—C12—H121 | 119.8 |
C4—C3—S2 | 120.5 (3) | | |
| | | |
O4—S1—C1—C6 | 167.1 (3) | O6—S5—C7—C12 | −100.9 (3) |
O3—S1—C1—C6 | −71.1 (3) | O7—S5—C7—C12 | 18.5 (3) |
O5—S1—C1—C6 | 48.4 (3) | O8—S5—C7—C12 | 139.8 (3) |
O4—S1—C1—C2 | −10.4 (3) | O6—S5—C7—C8 | 75.5 (3) |
O3—S1—C1—C2 | 111.3 (3) | O7—S5—C7—C8 | −165.0 (3) |
O5—S1—C1—C2 | −129.2 (3) | O8—S5—C7—C8 | −43.8 (3) |
C6—C1—C2—C3 | −3.0 (5) | C12—C7—C8—C9 | 2.0 (5) |
S1—C1—C2—C3 | 174.5 (3) | S5—C7—C8—C9 | −174.4 (3) |
C1—C2—C3—C4 | −1.1 (5) | C7—C8—C9—C10 | 0.6 (5) |
C1—C2—C3—S2 | 179.1 (3) | C7—C8—C9—S4 | −178.9 (3) |
C3ii—S2—C3—C2 | 86.5 (3) | C9ii—S4—C9—C8 | −86.0 (3) |
C3ii—S2—C3—C4 | −93.4 (3) | C9ii—S4—C9—C10 | 94.6 (3) |
C2—C3—C4—O1 | −174.8 (3) | C8—C9—C10—O2 | 177.1 (3) |
S2—C3—C4—O1 | 5.1 (5) | S4—C9—C10—O2 | −3.5 (5) |
C2—C3—C4—C5 | 4.2 (5) | C8—C9—C10—C11 | −2.5 (5) |
S2—C3—C4—C5 | −175.9 (3) | S4—C9—C10—C11 | 176.9 (3) |
O1—C4—C5—C6 | 175.7 (3) | O2—C10—C11—C12 | −177.7 (3) |
C3—C4—C5—C6 | −3.3 (5) | C9—C10—C11—C12 | 1.9 (5) |
O1—C4—C5—S3 | −2.9 (5) | O2—C10—C11—S3 | 1.8 (5) |
C3—C4—C5—S3 | 178.1 (3) | C9—C10—C11—S3 | −178.6 (3) |
C11—S3—C5—C6 | −83.3 (3) | C5—S3—C11—C12 | 81.7 (3) |
C11—S3—C5—C4 | 95.4 (3) | C5—S3—C11—C10 | −97.8 (3) |
C4—C5—C6—C1 | −0.8 (5) | C10—C11—C12—C7 | 0.6 (5) |
S3—C5—C6—C1 | 177.8 (3) | S3—C11—C12—C7 | −178.9 (3) |
C2—C1—C6—C5 | 3.9 (5) | C8—C7—C12—C11 | −2.6 (5) |
S1—C1—C6—C5 | −173.6 (3) | S5—C7—C12—C11 | 173.8 (3) |
Symmetry codes: (i) x, −y+3/2, z; (ii) x, −y+1/2, z. |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O1w—H1w1···O6iii | 0.85 (1) | 1.92 (1) | 2.767 (4) | 172 (3) |
O2w—H2w1···O7 | 0.84 (1) | 1.90 (1) | 2.732 (4) | 169 (4) |
O3w—H3w1···O8 | 0.85 (1) | 1.97 (1) | 2.817 (4) | 176 (5) |
O3w—H3w2···O3iv | 0.85 (1) | 1.91 (1) | 2.754 (4) | 171 (5) |
O4w—H4w1···O4v | 0.85 (1) | 1.91 (2) | 2.746 (4) | 168 (7) |
O4w—H4w2···O8iii | 0.85 (1) | 1.93 (1) | 2.775 (5) | 174 (7) |
O5w—H5w1···O4v | 0.85 (1) | 1.98 (1) | 2.814 (4) | 172 (6) |
O6w—H6w1···O3 | 0.85 (1) | 1.94 (1) | 2.786 (4) | 175 (4) |
O7w—H7w2···O5 | 0.85 (1) | 1.93 (1) | 2.764 (4) | 169 (5) |
O7w—H7w1···O7 | 0.85 (1) | 1.96 (2) | 2.781 (4) | 162 (6) |
O8w—H8w1···O5v | 0.85 (1) | 1.94 (1) | 2.788 (4) | 176 (5) |
O8w—H8w2···O6v | 0.85 (1) | 1.96 (1) | 2.798 (4) | 170 (5) |
O9w—H9w1···O8w | 0.86 (1) | 2.44 (2) | 3.188 (12) | 146 (3) |
O1—H11···O1ii | 0.85 | 2.23 | 2.864 (7) | 132 |
O1—H12···O2 | 0.85 | 2.45 | 3.066 (5) | 130 |
O2—H21···O1 | 0.85 | 2.48 | 3.066 (4) | 127 |
O2—H22···O2ii | 0.85 | 2.33 | 2.940 (4) | 129 |
Symmetry codes: (ii) x, −y+1/2, z; (iii) −x+1, −y+1, −z+1; (iv) x−1, y, z; (v) −x+2, −y+1, −z+1. |
Experimental details
Crystal data |
Chemical formula | [Cd(H2O)6]2(C24H2O16S8)·H2O |
Mr | 1271.82 |
Crystal system, space group | Monoclinic, P21/m |
Temperature (K) | 295 |
a, b, c (Å) | 13.1183 (5), 14.2581 (6), 13.1854 (5) |
β (°) | 113.563 (1) |
V (Å3) | 2260.6 (2) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 1.40 |
Crystal size (mm) | 0.35 × 0.33 × 0.27 |
|
Data collection |
Diffractometer | Bruker APEX2 area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.556, 0.703 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 19302, 5380, 5106 |
Rint | 0.019 |
(sin θ/λ)max (Å−1) | 0.650 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.041, 0.130, 1.11 |
No. of reflections | 5380 |
No. of parameters | 337 |
No. of restraints | 22 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 1.76, −1.74 |
Selected bond lengths (Å) topCd1—O1w | 2.243 (5) | Cd2—O5w | 2.272 (5) |
Cd1—O2w | 2.243 (5) | Cd2—O6w | 2.245 (5) |
Cd1—O3w | 2.288 (3) | Cd2—O7w | 2.275 (3) |
Cd1—O4w | 2.279 (4) | Cd2—O8w | 2.287 (3) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O1w—H1w1···O6i | 0.85 (1) | 1.92 (1) | 2.767 (4) | 172 (3) |
O2w—H2w1···O7 | 0.84 (1) | 1.90 (1) | 2.732 (4) | 169 (4) |
O3w—H3w1···O8 | 0.85 (1) | 1.97 (1) | 2.817 (4) | 176 (5) |
O3w—H3w2···O3ii | 0.85 (1) | 1.91 (1) | 2.754 (4) | 171 (5) |
O4w—H4w1···O4iii | 0.85 (1) | 1.91 (2) | 2.746 (4) | 168 (7) |
O4w—H4w2···O8i | 0.85 (1) | 1.93 (1) | 2.775 (5) | 174 (7) |
O5w—H5w1···O4iii | 0.85 (1) | 1.98 (1) | 2.814 (4) | 172 (6) |
O6w—H6w1···O3 | 0.85 (1) | 1.94 (1) | 2.786 (4) | 175 (4) |
O7w—H7w2···O5 | 0.85 (1) | 1.93 (1) | 2.764 (4) | 169 (5) |
O7w—H7w1···O7 | 0.85 (1) | 1.96 (2) | 2.781 (4) | 162 (6) |
O8w—H8w1···O5iii | 0.85 (1) | 1.94 (1) | 2.788 (4) | 176 (5) |
O8w—H8w2···O6iii | 0.85 (1) | 1.96 (1) | 2.798 (4) | 170 (5) |
O9w—H9w1···O8w | 0.86 (1) | 2.44 (2) | 3.188 (12) | 146 (3) |
O1—H11···O1iv | 0.85 | 2.23 | 2.864 (7) | 132 |
O1—H12···O2 | 0.85 | 2.45 | 3.066 (5) | 130 |
O2—H21···O1 | 0.85 | 2.48 | 3.066 (4) | 127 |
O2—H22···O2iv | 0.85 | 2.33 | 2.940 (4) | 129 |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) x−1, y, z; (iii) −x+2, −y+1, −z+1; (iv) x, −y+1/2, z. |
The p-sulfonatocalix[4]arene (see scheme) tetraanion adopts a bowl-shaped conformation with the negatively charged sulfonate groups at the upper rim and the neutral/deprotonated hydroxyl groups at the lower rim. As such, it is capable of forming inclusion compounds through π-stacking, hydrogen-bonding and coordinative interactions (Atwood et al., 2001). A manganese(II) derivative of this species has been described (Gao et al., 2003) in which the hexaaquamanganese cations interact with the anionic p-sulfonatocalix[4]arene indirectly, via their coordinated water molecules. The compound was formulated as [Mn(H2O)6]2(C24H2O16S8)·0.5H2O.
The present cadmium complex, (I) (Fig. 1), is essentially isostructural with the manganese analogue (same cell dimensions and space group), but was modelled as [Cd(H2O)6]2(C24H2O16S8)·H2O, i.e. with full occupancy of the non-coordinatd water molecule. The hexaaquacadmium(II) species possess typical geometrical parameters (Table 1).
An extensive network of O—H···O hydrogen bonds (Table 2) help to stabilize the crystal packing in (I). The non-coordinated water molecule (O9w) lies on a special position of site symmetry m; as it forms long hydrogen bonds [H···O = 2.44 (2) Å] to neighboring acceptor calixarene hydroxide O atoms, its displacement factor is relatively large.