Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536813016887/hb7096sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536813016887/hb7096Isup2.hkl | |
Chemical Markup Language (CML) file https://doi.org/10.1107/S1600536813016887/hb7096Isup3.cml |
CCDC reference: 962133
Key indicators
- Single-crystal X-ray study
- T = 173 K
- Mean (C-C) = 0.004 Å
- R factor = 0.044
- wR factor = 0.145
- Data-to-parameter ratio = 13.4
checkCIF/PLATON results
No syntax errors found
Alert level B Crystal system given = monoclinic PLAT934_ALERT_3_B Number of (Iobs-Icalc)/SigmaW > 10 Outliers .... 3
Alert level C CHEMW01_ALERT_1_C The difference between the given and expected weight for compound is greater 1 mass unit. Check that all hydrogen atoms have been taken into account. PLAT029_ALERT_3_C _diffrn_measured_fraction_theta_full Low ....... 0.964 PLAT068_ALERT_1_C Reported F000 Differs from Calcd (or Missing)... ? Check PLAT910_ALERT_3_C Missing # of FCF Reflections Below Th(Min) ..... 1 PLAT911_ALERT_3_C Missing # FCF Refl Between THmin & STh/L= 0.600 5 PLAT915_ALERT_3_C Low Friedel Pair Coverage ...................... 53 % PLAT918_ALERT_3_C Reflection(s) # with I(obs) much smaller I(calc) 1 PLAT939_ALERT_3_C Large Value of Not (SHELXL) Weight Optimized S . 13.19
Alert level G PLAT005_ALERT_5_G No _iucr_refine_instructions_details in the CIF ? Do ! PLAT007_ALERT_5_G Note: Number of Unrefined Donor-H Atoms ........ 1 PLAT093_ALERT_1_G No su's on H-positions, refinement reported as . mixed PLAT791_ALERT_4_G Note: The Model has Chirality at C7 (Verify) S PLAT912_ALERT_4_G Missing # of FCF Reflections Above STh/L= 0.600 42
0 ALERT level A = Most likely a serious problem - resolve or explain 1 ALERT level B = A potentially serious problem, consider carefully 8 ALERT level C = Check. Ensure it is not caused by an omission or oversight 5 ALERT level G = General information/check it is not something unexpected 3 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 0 ALERT type 2 Indicator that the structure model may be wrong or deficient 7 ALERT type 3 Indicator that the structure quality may be low 2 ALERT type 4 Improvement, methodology, query or suggestion 2 ALERT type 5 Informative message, check
To a stirred solution of (S)-N,O-benzyl-malimide ((S)-1-benzyl-3-(benzyloxy)pyrrolidine-2,5-dione) (2 mmol) in anhydrous CH2Cl2 (20 ml) was added dropwise EtMgBr (4 mmol) in diethyl ether at -20 °C under nitrogen atmosphere. The mixture was stirred at -20 °C for 1 h and then quenched by adding a saturated aqueous solution of NH4Cl. The mixture was extracted with CH2Cl2 (4 × 10 ml). The combined extracts were washed with brine, dried over Na2SO4, concentrated under reduced pressure. The residue was purified by flash chromatography (eluent: EtOAc/PE = 1: 2; then 2: 1), provided a mixture of diastereomers (4S)-1-benzyl-4-(benzyloxy)-5-ethyl-5-hydroxypyrrolidin-2-one as major products (white crystals, yield 85%) and the title compound as minor product (colourless crystals, yield 10%). Colourless pillars of the tiltle compound were obtained by slow evaporation of a mixture of n-hexane/ethyl acetate solution.
The hydrogen atoms were positioned geometrically, with C—H = 0.93, 0.98, 0.97 and 0.96 Å for phenyl, methine, methylene and methyl H atoms, respectively, and were included in the refinement in the riding model approximation. The displacement parameters of methyl H atoms were set to 1.5Ueq(C), while those of other H atoms were set to 1.2Ueq(C). In the absence of significant anomalous scattering effects the absolute structure of the chosen crystal was indeterminate.
Using Grignard reagents as the nucleophiles allows a flexible introduction of diverse side chains at the C-2 carbonyl of malimides (Huang, 2006). In addition, Grignard reagents are essentially strong bases, so the addition of a Grignard reagent to a malimide provided an unexpected 3-alkoxy group elimination product rac-1-benzyl-5-methyl-1H-pyrrol-2(5H)-one (He et al., 2003). Recently a new addition-elimination product, rac-1-benzyl-5-ethyl-5-hydroxy-1H-pyrrol-2(5H)-one, was found in the Grignard addition reaction. Here we report the structure of the title compound.
In γ-lactam ring the vinyl carbon atoms remain almost coplanar with the amide moiety [r.m.s. 0.0006 Å], which are agreement with the similar compounds (Goh et al., 2007; Ma & Xie, 2002). In the crystal, the molecules are linked by O—H···O hydrogen bonds between the hydroxyl group and the oxygen atom of the carbonyl group.
For background to Grignard reagents, see: Huang (2006); He et al. (2003). For related structures, see: Goh et al. (2007); Ma & Xie (2002).
Data collection: CrysAlis PRO (Oxford Diffraction, 2010); cell refinement: CrysAlis PRO (Oxford Diffraction, 2010); data reduction: CrysAlis PRO (Oxford Diffraction, 2010); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).
C13H15NO2 | F(000) = 230 |
Mr = 215.27 | Dx = 1.227 Mg m−3 |
Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
a = 7.0399 (14) Å | Cell parameters from 2119 reflections |
b = 7.1795 (14) Å | θ = 3.0–27.0° |
c = 11.817 (2) Å | µ = 0.08 mm−1 |
β = 102.72 (3)° | T = 173 K |
V = 582.6 (2) Å3 | Pillar, colourless |
Z = 2 | 0.3 × 0.2 × 0.2 mm |
Oxford Diffraction Xcalibur (Sapphire3, Gemini ultra) diffractometer | 1947 independent reflections |
Radiation source: Enhance (Mo) X-ray Source | 1811 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.054 |
Detector resolution: 16.1903 pixels mm-1 | θmax = 27.0°, θmin = 3.0° |
phi and ω scans | h = −8→8 |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010) | k = −9→9 |
Tmin = 0.980, Tmax = 0.983 | l = −14→15 |
3363 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.044 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.145 | H-atom parameters constrained |
S = 1.13 | w = 1/[σ2(Fo2) + (0.0893P)2 + 0.0423P] where P = (Fo2 + 2Fc2)/3 |
1947 reflections | (Δ/σ)max < 0.001 |
145 parameters | Δρmax = 0.25 e Å−3 |
1 restraint | Δρmin = −0.32 e Å−3 |
C13H15NO2 | V = 582.6 (2) Å3 |
Mr = 215.27 | Z = 2 |
Monoclinic, P21 | Mo Kα radiation |
a = 7.0399 (14) Å | µ = 0.08 mm−1 |
b = 7.1795 (14) Å | T = 173 K |
c = 11.817 (2) Å | 0.3 × 0.2 × 0.2 mm |
β = 102.72 (3)° |
Oxford Diffraction Xcalibur (Sapphire3, Gemini ultra) diffractometer | 1947 independent reflections |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010) | 1811 reflections with I > 2σ(I) |
Tmin = 0.980, Tmax = 0.983 | Rint = 0.054 |
3363 measured reflections |
R[F2 > 2σ(F2)] = 0.044 | 1 restraint |
wR(F2) = 0.145 | H-atom parameters constrained |
S = 1.13 | Δρmax = 0.25 e Å−3 |
1947 reflections | Δρmin = −0.32 e Å−3 |
145 parameters |
Experimental. Absorption correction: CrysAlisPro, Oxford Diffraction Ltd., Version 1.171.34.44. Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | −0.2177 (3) | 0.6481 (3) | 0.96950 (15) | 0.0294 (4) | |
N1 | −0.0106 (3) | 0.7331 (3) | 0.85306 (15) | 0.0214 (4) | |
C1 | −0.2478 (4) | 0.4825 (5) | 0.4747 (2) | 0.0383 (7) | |
H1A | −0.2359 | 0.4924 | 0.3981 | 0.046* | |
O2 | 0.2472 (3) | 0.9389 (2) | 0.83792 (15) | 0.0294 (4) | |
H2A | 0.2397 | 1.0049 | 0.8934 | 0.044* | |
C2 | −0.3230 (4) | 0.3208 (5) | 0.5114 (2) | 0.0403 (7) | |
H2B | −0.36 | 0.2222 | 0.4602 | 0.048* | |
C3 | −0.3426 (4) | 0.3079 (5) | 0.6254 (2) | 0.0352 (6) | |
H3A | −0.3927 | 0.2 | 0.6511 | 0.042* | |
C4 | 0.2774 (4) | 0.6967 (4) | 0.9869 (2) | 0.0291 (6) | |
H4A | 0.4086 | 0.6937 | 1.0235 | 0.035* | |
C5 | −0.1894 (4) | 0.6312 (4) | 0.5507 (2) | 0.0325 (6) | |
H5A | −0.1362 | 0.738 | 0.5255 | 0.039* | |
C6 | −0.1548 (4) | 0.7814 (4) | 0.74846 (19) | 0.0254 (5) | |
H6A | −0.1033 | 0.8808 | 0.7084 | 0.03* | |
H6B | −0.2707 | 0.8281 | 0.7706 | 0.03* | |
C7 | 0.2009 (4) | 0.7521 (3) | 0.8611 (2) | 0.0241 (5) | |
C8 | −0.2875 (4) | 0.4557 (4) | 0.7009 (2) | 0.0283 (6) | |
H8A | −0.3016 | 0.4459 | 0.7771 | 0.034* | |
C9 | −0.0541 (3) | 0.6758 (3) | 0.95313 (19) | 0.0225 (5) | |
C10 | −0.2118 (3) | 0.6177 (4) | 0.66498 (19) | 0.0252 (5) | |
C11 | 0.1357 (4) | 0.6535 (4) | 1.0372 (2) | 0.0300 (6) | |
H11A | 0.151 | 0.6149 | 1.1138 | 0.036* | |
C12 | 0.2726 (4) | 0.6284 (4) | 0.7756 (2) | 0.0286 (6) | |
H12A | 0.4104 | 0.652 | 0.7826 | 0.034* | |
H12B | 0.2061 | 0.6643 | 0.6978 | 0.034* | |
C13 | 0.2442 (4) | 0.4196 (4) | 0.7893 (2) | 0.0335 (6) | |
H13A | 0.2931 | 0.3535 | 0.7311 | 0.05* | |
H13B | 0.1081 | 0.3932 | 0.7807 | 0.05* | |
H13C | 0.3136 | 0.3806 | 0.8649 | 0.05* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0328 (9) | 0.0290 (11) | 0.0303 (9) | −0.0023 (8) | 0.0153 (7) | −0.0011 (8) |
N1 | 0.0209 (9) | 0.0227 (10) | 0.0203 (8) | 0.0000 (8) | 0.0035 (7) | −0.0002 (8) |
C1 | 0.0360 (14) | 0.053 (2) | 0.0254 (12) | 0.0033 (15) | 0.0061 (10) | −0.0087 (13) |
O2 | 0.0358 (10) | 0.0214 (10) | 0.0325 (9) | −0.0076 (8) | 0.0104 (7) | 0.0009 (7) |
C2 | 0.0317 (14) | 0.052 (2) | 0.0370 (14) | −0.0020 (14) | 0.0067 (11) | −0.0215 (14) |
C3 | 0.0295 (14) | 0.0360 (16) | 0.0398 (14) | −0.0060 (12) | 0.0068 (11) | −0.0067 (12) |
C4 | 0.0289 (12) | 0.0263 (14) | 0.0283 (11) | −0.0024 (11) | −0.0020 (9) | 0.0022 (10) |
C5 | 0.0311 (13) | 0.0398 (16) | 0.0260 (12) | 0.0042 (12) | 0.0049 (10) | 0.0011 (12) |
C6 | 0.0249 (12) | 0.0254 (13) | 0.0242 (11) | 0.0054 (10) | 0.0017 (9) | 0.0016 (10) |
C7 | 0.0224 (11) | 0.0218 (13) | 0.0274 (11) | −0.0005 (10) | 0.0039 (8) | 0.0017 (10) |
C8 | 0.0237 (11) | 0.0339 (16) | 0.0268 (11) | 0.0028 (11) | 0.0047 (8) | −0.0044 (11) |
C9 | 0.0300 (12) | 0.0150 (11) | 0.0230 (10) | −0.0016 (10) | 0.0069 (8) | −0.0021 (9) |
C10 | 0.0196 (10) | 0.0320 (14) | 0.0222 (10) | 0.0058 (11) | 0.0004 (8) | −0.0033 (10) |
C11 | 0.0363 (13) | 0.0278 (14) | 0.0225 (11) | −0.0053 (12) | −0.0008 (9) | 0.0013 (10) |
C12 | 0.0244 (12) | 0.0275 (14) | 0.0362 (13) | 0.0000 (10) | 0.0118 (9) | 0.0008 (11) |
C13 | 0.0310 (14) | 0.0260 (13) | 0.0449 (14) | 0.0059 (12) | 0.0114 (11) | −0.0022 (12) |
O1—C9 | 1.225 (3) | C5—C10 | 1.397 (3) |
N1—C9 | 1.349 (3) | C5—H5A | 0.93 |
N1—C6 | 1.458 (3) | C6—C10 | 1.530 (3) |
N1—C7 | 1.477 (3) | C6—H6A | 0.97 |
C1—C2 | 1.385 (5) | C6—H6B | 0.97 |
C1—C5 | 1.397 (4) | C7—C12 | 1.513 (4) |
C1—H1A | 0.93 | C8—C10 | 1.384 (4) |
O2—C7 | 1.421 (3) | C8—H8A | 0.93 |
O2—H2A | 0.82 | C9—C11 | 1.488 (3) |
C2—C3 | 1.387 (4) | C11—H11A | 0.93 |
C2—H2B | 0.93 | C12—C13 | 1.526 (4) |
C3—C8 | 1.386 (4) | C12—H12A | 0.97 |
C3—H3A | 0.93 | C12—H12B | 0.97 |
C4—C11 | 1.306 (4) | C13—H13A | 0.96 |
C4—C7 | 1.518 (3) | C13—H13B | 0.96 |
C4—H4A | 0.93 | C13—H13C | 0.96 |
C9—N1—C6 | 124.4 (2) | O2—C7—C4 | 112.9 (2) |
C9—N1—C7 | 113.05 (18) | N1—C7—C4 | 100.05 (19) |
C6—N1—C7 | 122.47 (19) | C12—C7—C4 | 113.7 (2) |
C2—C1—C5 | 121.2 (2) | C10—C8—C3 | 121.2 (2) |
C2—C1—H1A | 119.4 | C10—C8—H8A | 119.4 |
C5—C1—H1A | 119.4 | C3—C8—H8A | 119.4 |
C7—O2—H2A | 109.5 | O1—C9—N1 | 126.2 (2) |
C1—C2—C3 | 119.1 (3) | O1—C9—C11 | 127.9 (2) |
C1—C2—H2B | 120.4 | N1—C9—C11 | 105.9 (2) |
C3—C2—H2B | 120.4 | C8—C10—C5 | 119.2 (2) |
C8—C3—C2 | 120.0 (3) | C8—C10—C6 | 120.7 (2) |
C8—C3—H3A | 120 | C5—C10—C6 | 120.0 (2) |
C2—C3—H3A | 120 | C4—C11—C9 | 109.5 (2) |
C11—C4—C7 | 111.5 (2) | C4—C11—H11A | 125.3 |
C11—C4—H4A | 124.3 | C9—C11—H11A | 125.3 |
C7—C4—H4A | 124.3 | C7—C12—C13 | 115.8 (2) |
C10—C5—C1 | 119.2 (3) | C7—C12—H12A | 108.3 |
C10—C5—H5A | 120.4 | C13—C12—H12A | 108.3 |
C1—C5—H5A | 120.4 | C7—C12—H12B | 108.3 |
N1—C6—C10 | 113.5 (2) | C13—C12—H12B | 108.3 |
N1—C6—H6A | 108.9 | H12A—C12—H12B | 107.4 |
C10—C6—H6A | 108.9 | C12—C13—H13A | 109.5 |
N1—C6—H6B | 108.9 | C12—C13—H13B | 109.5 |
C10—C6—H6B | 108.9 | H13A—C13—H13B | 109.5 |
H6A—C6—H6B | 107.7 | C12—C13—H13C | 109.5 |
O2—C7—N1 | 110.21 (19) | H13A—C13—H13C | 109.5 |
O2—C7—C12 | 107.48 (19) | H13B—C13—H13C | 109.5 |
N1—C7—C12 | 112.5 (2) | ||
C5—C1—C2—C3 | 0.8 (4) | C7—N1—C9—O1 | −179.5 (2) |
C1—C2—C3—C8 | 0.1 (4) | C6—N1—C9—C11 | −176.7 (2) |
C2—C1—C5—C10 | −1.5 (4) | C7—N1—C9—C11 | 0.3 (3) |
C9—N1—C6—C10 | −92.1 (3) | C3—C8—C10—C5 | −0.5 (4) |
C7—N1—C6—C10 | 91.2 (3) | C3—C8—C10—C6 | 178.9 (2) |
C9—N1—C7—O2 | −119.7 (2) | C1—C5—C10—C8 | 1.4 (4) |
C6—N1—C7—O2 | 57.4 (3) | C1—C5—C10—C6 | −178.0 (2) |
C9—N1—C7—C12 | 120.4 (2) | N1—C6—C10—C8 | 57.8 (3) |
C6—N1—C7—C12 | −62.5 (3) | N1—C6—C10—C5 | −122.8 (2) |
C9—N1—C7—C4 | −0.6 (3) | C7—C4—C11—C9 | −0.6 (3) |
C6—N1—C7—C4 | 176.5 (2) | O1—C9—C11—C4 | 180.0 (3) |
C11—C4—C7—O2 | 117.8 (3) | N1—C9—C11—C4 | 0.2 (3) |
C11—C4—C7—N1 | 0.7 (3) | O2—C7—C12—C13 | 177.5 (2) |
C11—C4—C7—C12 | −119.4 (3) | N1—C7—C12—C13 | −61.0 (3) |
C2—C3—C8—C10 | −0.2 (4) | C4—C7—C12—C13 | 51.8 (3) |
C6—N1—C9—O1 | 3.5 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2A···O1i | 0.82 | 1.95 | 2.772 (3) | 176 |
Symmetry code: (i) −x, y+1/2, −z+2. |
Experimental details
Crystal data | |
Chemical formula | C13H15NO2 |
Mr | 215.27 |
Crystal system, space group | Monoclinic, P21 |
Temperature (K) | 173 |
a, b, c (Å) | 7.0399 (14), 7.1795 (14), 11.817 (2) |
β (°) | 102.72 (3) |
V (Å3) | 582.6 (2) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.08 |
Crystal size (mm) | 0.3 × 0.2 × 0.2 |
Data collection | |
Diffractometer | Oxford Diffraction Xcalibur (Sapphire3, Gemini ultra) |
Absorption correction | Multi-scan (CrysAlis PRO; Oxford Diffraction, 2010) |
Tmin, Tmax | 0.980, 0.983 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 3363, 1947, 1811 |
Rint | 0.054 |
(sin θ/λ)max (Å−1) | 0.638 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.044, 0.145, 1.13 |
No. of reflections | 1947 |
No. of parameters | 145 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.25, −0.32 |
Computer programs: CrysAlis PRO (Oxford Diffraction, 2010), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2A···O1i | 0.82 | 1.95 | 2.772 (3) | 176 |
Symmetry code: (i) −x, y+1/2, −z+2. |
Using Grignard reagents as the nucleophiles allows a flexible introduction of diverse side chains at the C-2 carbonyl of malimides (Huang, 2006). In addition, Grignard reagents are essentially strong bases, so the addition of a Grignard reagent to a malimide provided an unexpected 3-alkoxy group elimination product rac-1-benzyl-5-methyl-1H-pyrrol-2(5H)-one (He et al., 2003). Recently a new addition-elimination product, rac-1-benzyl-5-ethyl-5-hydroxy-1H-pyrrol-2(5H)-one, was found in the Grignard addition reaction. Here we report the structure of the title compound.
In γ-lactam ring the vinyl carbon atoms remain almost coplanar with the amide moiety [r.m.s. 0.0006 Å], which are agreement with the similar compounds (Goh et al., 2007; Ma & Xie, 2002). In the crystal, the molecules are linked by O—H···O hydrogen bonds between the hydroxyl group and the oxygen atom of the carbonyl group.