The previously unknown crystal structure of 2,6-dibromo-3,4,5-trimethoxybenzoic acid was determined employing state-of-the-art Hirshfeld atom refinement and the crystal packing was analysed using Hirshfeld surface analysis.
Supporting information
CCDC reference: 2281408
Key indicators
Structure: I
- Single-crystal X-ray study
- T = 100 K
- R factor = 0.053
- wR factor = 0.123
- Data-to-parameter ratio = 14.9
checkCIF/PLATON results
No syntax errors found
Alert level C
PLAT341_ALERT_3_C Low Bond Precision on C-C Bonds ............... 0.008 Ang.
PLAT906_ALERT_3_C Large K Value in the Analysis of Variance ...... 5.441 Check
PLAT911_ALERT_3_C Missing FCF Refl Between Thmin & STh/L= 0.600 5 Report
Alert level G
PLAT003_ALERT_2_G Number of Uiso or Uij Restrained non-H Atoms ... 4 Report
PLAT012_ALERT_1_G No _shelx_res_checksum Found in CIF ...... Please Check
PLAT068_ALERT_1_G Reported F000 Differs from Calcd (or Missing)... Please Check
PLAT186_ALERT_4_G The CIF-Embedded .res File Contains ISOR Records 1 Report
PLAT187_ALERT_4_G The CIF-Embedded .res File Contains RIGU Records 4 Report
PLAT190_ALERT_3_G A Non-default RIGU Restraint Value for First Par 0.0100 Report
PLAT190_ALERT_3_G A Non-default RIGU Restraint Value for SecondPar 0.0100 Report
PLAT720_ALERT_4_G Number of Unusual/Non-Standard Labels .......... 10 Note
PLAT860_ALERT_3_G Number of Least-Squares Restraints ............. 63 Note
PLAT910_ALERT_3_G Missing # of FCF Reflection(s) Below Theta(Min). 3 Note
PLAT912_ALERT_4_G Missing # of FCF Reflections Above STh/L= 0.600 3 Note
PLAT941_ALERT_3_G Average HKL Measurement Multiplicity ........... 1.0 Low
PLAT960_ALERT_3_G Number of Intensities with I < - 2*sig(I) ... 2 Check
PLAT977_ALERT_2_G Check Negative Difference Density on H00F . -0.25 eA-3
PLAT978_ALERT_2_G Number C-C Bonds with Positive Residual Density. 0 Info
PLAT979_ALERT_1_G NoSpherA2 Scattering Factors Used .............. Please Note
0 ALERT level A = Most likely a serious problem - resolve or explain
0 ALERT level B = A potentially serious problem, consider carefully
3 ALERT level C = Check. Ensure it is not caused by an omission or oversight
16 ALERT level G = General information/check it is not something unexpected
3 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
3 ALERT type 2 Indicator that the structure model may be wrong or deficient
9 ALERT type 3 Indicator that the structure quality may be low
4 ALERT type 4 Improvement, methodology, query or suggestion
0 ALERT type 5 Informative message, check
Data collection: CrysAlis PRO 1.171.43.36a (Rigaku OD, 2022); cell refinement: CrysAlis PRO 1.171.43.36a (Rigaku OD, 2022); data reduction: CrysAlis PRO 1.171.43.36a (Rigaku OD, 2022); program(s) used to solve structure: SHELXT2018/2 (Sheldrick, 2015); program(s) used to refine structure: olex2.refine 1.5-alpha (Bourhis et al., 2015),
NoSpherA2 (Kleemiss et al., 2021); molecular graphics: Olex2 1.5-alpha (Dolomanov et al., 2009); software used to prepare material for publication: publCIF (Westrip, 2010).
2,6-Dibromo-3,4,5-trimethoxybenzoic acid
top
Crystal data top
C10H10Br2O5 | F(000) = 718.856 |
Mr = 370.00 | Dx = 1.875 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
a = 11.4047 (9) Å | Cell parameters from 1911 reflections |
b = 7.1107 (3) Å | θ = 3.1–28.8° |
c = 16.8997 (13) Å | µ = 6.19 mm−1 |
β = 107.009 (8)° | T = 100 K |
V = 1310.54 (16) Å3 | Block, clear colourless |
Z = 4 | 0.08 × 0.06 × 0.03 mm |
Data collection top
SuperNova, Dualflex, AtlasS2 diffractometer | 3245 independent reflections |
Radiation source: micro-focus sealed X-ray tube, SuperNova (Mo) X-ray Source | 2254 reflections with I ≥ 2u(I) |
Mirror monochromator | Rint = 0.084 |
Detector resolution: 5.2548 pixels mm-1 | θmax = 28.3°, θmin = 3.1° |
ω scans | h = −17→19 |
Absorption correction: gaussian (CrysAlisPro; Rigaku OD, 2022) | k = −12→6 |
Tmin = 0.749, Tmax = 0.855 | l = −28→28 |
18764 measured reflections | |
Refinement top
Refinement on F2 | 4 constraints |
Least-squares matrix: full | Primary atom site location: dual |
R[F2 > 2σ(F2)] = 0.053 | Only H-atom displacement parameters refined |
wR(F2) = 0.123 | w = 1/[σ2(Fo2) + (0.0395P)2 + 3.4625P] where P = (Fo2 + 2Fc2)/3 |
S = 1.06 | (Δ/σ)max = 0.0002 |
3245 reflections | Δρmax = 1.25 e Å−3 |
218 parameters | Δρmin = −1.48 e Å−3 |
63 restraints | |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
Br1 | 0.86638 (5) | 0.67372 (7) | 0.45104 (4) | 0.03398 (18) | |
Br2 | 0.43161 (5) | 0.68854 (7) | 0.17096 (3) | 0.03341 (18) | |
O1 | 0.6558 (4) | 0.9831 (5) | 0.3032 (2) | 0.0315 (9) | |
H1 | 0.692 (6) | 1.0810 (6) | 0.277 (4) | 0.04 (2) | |
O2 | 0.7570 (4) | 0.7934 (5) | 0.2410 (3) | 0.0384 (11) | |
O3 | 0.7246 (5) | 0.3480 (5) | 0.5004 (3) | 0.0468 (12) | |
O4 | 0.5037 (4) | 0.1913 (5) | 0.4131 (3) | 0.0442 (12) | |
O5 | 0.3643 (4) | 0.3576 (5) | 0.2669 (3) | 0.0484 (13) | |
C4 | 0.6357 (4) | 0.6586 (6) | 0.3198 (3) | 0.0200 (10) | |
C5 | 0.7054 (5) | 0.5773 (7) | 0.3932 (3) | 0.0278 (12) | |
C3 | 0.5234 (5) | 0.5822 (7) | 0.2773 (4) | 0.0284 (12) | |
C6 | 0.6606 (6) | 0.4204 (7) | 0.4262 (3) | 0.0312 (13) | |
C2 | 0.4771 (5) | 0.4239 (7) | 0.3079 (4) | 0.0319 (13) | |
C7 | 0.6884 (5) | 0.8184 (7) | 0.2838 (3) | 0.0261 (12) | |
C1 | 0.5451 (6) | 0.3442 (7) | 0.3827 (4) | 0.0300 (13) | |
C8 | 0.7911 (7) | 0.1815 (8) | 0.4937 (4) | 0.0472 (17) | |
H00a | 0.852 (3) | 0.2105 (16) | 0.457 (2) | 0.056 (11) | |
H00b | 0.844 (3) | 0.136 (3) | 0.5545 (5) | 0.057 (10) | |
H00c | 0.7277 (7) | 0.0722 (18) | 0.465 (2) | 0.048 (10) | |
C10 | 0.3618 (7) | 0.1753 (8) | 0.2314 (5) | 0.0523 (19) | |
H00d | 0.2696 (10) | 0.142 (3) | 0.195 (2) | 0.066 (11) | |
H00e | 0.421 (3) | 0.173 (2) | 0.192 (2) | 0.061 (11) | |
H00f | 0.393 (4) | 0.0726 (11) | 0.2799 (5) | 0.060 (11) | |
C9 | 0.4330 (7) | 0.2341 (9) | 0.4679 (5) | 0.056 (2) | |
H00g | 0.359 (2) | 0.326 (5) | 0.4373 (10) | 0.062 (10) | |
H00h | 0.397 (3) | 0.1060 (11) | 0.485 (2) | 0.052 (10) | |
H00i | 0.4904 (11) | 0.302 (5) | 0.5224 (12) | 0.072 (11) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Br1 | 0.0308 (3) | 0.0207 (3) | 0.0382 (4) | 0.0033 (2) | −0.0091 (2) | −0.0047 (2) |
Br2 | 0.0382 (4) | 0.0181 (3) | 0.0312 (3) | 0.0032 (2) | −0.0097 (2) | −0.0045 (2) |
O1 | 0.043 (2) | 0.0208 (19) | 0.038 (2) | −0.0014 (17) | 0.0242 (19) | 0.0003 (16) |
H1 | 0.08 (4) | 0.03 (3) | 0.04 (3) | −0.024 (13) | 0.033 (17) | −0.006 (13) |
O2 | 0.061 (3) | 0.0176 (19) | 0.056 (3) | 0.0006 (18) | 0.047 (2) | 0.0001 (18) |
O3 | 0.083 (4) | 0.029 (2) | 0.031 (2) | 0.010 (2) | 0.021 (2) | 0.0072 (18) |
O4 | 0.068 (3) | 0.021 (2) | 0.062 (3) | 0.0039 (19) | 0.048 (3) | 0.0028 (19) |
O5 | 0.027 (2) | 0.026 (2) | 0.089 (4) | −0.0041 (17) | 0.013 (2) | −0.007 (2) |
C4 | 0.023 (3) | 0.015 (2) | 0.025 (3) | −0.0035 (19) | 0.012 (2) | −0.0007 (18) |
C5 | 0.035 (3) | 0.022 (3) | 0.028 (3) | 0.004 (2) | 0.012 (2) | 0.000 (2) |
C3 | 0.026 (3) | 0.019 (3) | 0.040 (3) | −0.002 (2) | 0.009 (2) | −0.002 (2) |
C6 | 0.049 (4) | 0.020 (3) | 0.028 (3) | 0.002 (2) | 0.018 (3) | 0.004 (2) |
C2 | 0.026 (3) | 0.024 (3) | 0.050 (4) | −0.005 (2) | 0.016 (3) | −0.001 (2) |
C7 | 0.036 (3) | 0.014 (2) | 0.035 (3) | 0.003 (2) | 0.022 (2) | −0.001 (2) |
C1 | 0.043 (3) | 0.015 (2) | 0.040 (3) | −0.001 (2) | 0.026 (3) | 0.003 (2) |
C8 | 0.068 (5) | 0.028 (3) | 0.039 (4) | 0.009 (3) | 0.006 (3) | 0.008 (3) |
H00a | 0.069 (13) | 0.05 (3) | 0.041 (11) | 0.005 (8) | 0.006 (6) | 0.012 (7) |
H00b | 0.072 (15) | 0.05 (2) | 0.042 (7) | 0.006 (8) | 0.005 (5) | 0.014 (5) |
H00c | 0.066 (17) | 0.031 (15) | 0.040 (12) | 0.011 (8) | 0.008 (6) | 0.008 (6) |
C10 | 0.050 (5) | 0.028 (3) | 0.077 (6) | −0.005 (3) | 0.016 (4) | −0.009 (3) |
H00d | 0.054 (7) | 0.06 (3) | 0.082 (14) | −0.012 (5) | 0.015 (5) | −0.003 (8) |
H00e | 0.053 (10) | 0.05 (3) | 0.078 (13) | −0.008 (7) | 0.016 (6) | −0.010 (8) |
H00f | 0.063 (13) | 0.036 (19) | 0.079 (14) | −0.003 (7) | 0.018 (6) | −0.007 (8) |
C9 | 0.076 (6) | 0.036 (4) | 0.081 (6) | 0.010 (3) | 0.063 (5) | 0.010 (4) |
H00g | 0.082 (12) | 0.038 (11) | 0.09 (2) | 0.012 (5) | 0.059 (8) | 0.008 (6) |
H00h | 0.081 (17) | 0.033 (9) | 0.073 (19) | 0.012 (6) | 0.070 (8) | 0.003 (6) |
H00i | 0.10 (2) | 0.041 (12) | 0.092 (12) | 0.008 (6) | 0.051 (8) | 0.007 (6) |
Geometric parameters (Å, º) top
Br1—C5 | 1.935 (6) | C5—C6 | 1.408 (7) |
Br2—C3 | 1.948 (6) | C3—C2 | 1.405 (7) |
O1—C7 | 1.299 (6) | C6—C1 | 1.415 (8) |
O2—C7 | 1.224 (6) | C2—C1 | 1.395 (8) |
O3—C6 | 1.354 (7) | C8—H00a | 1.0770 |
O3—C8 | 1.429 (7) | C8—H00b | 1.0770 |
O4—C1 | 1.346 (6) | C8—H00c | 1.0770 |
O4—C9 | 1.427 (7) | C10—H00d | 1.0770 |
O5—C2 | 1.355 (7) | C10—H00e | 1.0770 |
O5—C10 | 1.425 (7) | C10—H00f | 1.0770 |
C4—C5 | 1.388 (7) | C9—H00g | 1.0770 |
C4—C3 | 1.383 (7) | C9—H00h | 1.0770 |
C4—C7 | 1.496 (7) | C9—H00i | 1.0770 |
| | | |
C1—C2—C3 | 119.3 (5) | C8—O3—C6 | 113.4 (5) |
C1—C2—O5 | 121.0 (5) | C9—O4—C1 | 113.8 (4) |
C1—C6—C5 | 119.2 (5) | H00a—C8—O3 | 109.5 |
C1—C6—O3 | 120.2 (5) | H00b—C8—H00a | 109.5 |
C10—O5—C2 | 115.5 (5) | H00b—C8—O3 | 109.5 |
C2—C1—C6 | 120.1 (5) | H00c—C8—H00b | 109.5 |
C2—C1—O4 | 120.6 (6) | H00c—C8—H00a | 109.5 |
C2—C3—C4 | 120.9 (5) | H00c—C8—O3 | 109.5 |
C2—C3—Br2 | 119.5 (4) | H00d—C10—O5 | 109.5 |
C3—C2—O5 | 119.6 (5) | H00e—C10—H00d | 109.5 |
C3—C4—C5 | 120.1 (5) | H00e—C10—O5 | 109.5 |
C4—C7—O2 | 122.1 (4) | H00f—C10—H00e | 109.5 |
C4—C7—O1 | 113.8 (4) | H00f—C10—H00d | 109.5 |
C4—C3—Br2 | 119.5 (4) | H00f—C10—O5 | 109.5 |
C4—C5—Br1 | 121.0 (4) | H00g—C9—O4 | 109.5 |
C5—C6—O3 | 120.5 (6) | H00h—C9—H00g | 109.5 |
C6—C1—O4 | 119.3 (5) | H00h—C9—O4 | 109.5 |
C6—C5—C4 | 120.3 (5) | H00i—C9—H00h | 109.5 |
C6—C5—Br1 | 118.8 (4) | H00i—C9—H00g | 109.5 |
C7—C4—C3 | 120.5 (5) | H00i—C9—O4 | 109.5 |
C7—C4—C5 | 119.1 (5) | O2—C7—O1 | 124.0 (5) |
C7—O1—H1 | 109.5 | | |
| | | |
Br1—C5—C4—C3 | 176.9 (4) | O3—C6—C5—C4 | −175.7 (5) |
Br1—C5—C4—C7 | 2.2 (5) | O3—C6—C1—O4 | −4.6 (6) |
Br1—C5—C6—O3 | 5.3 (5) | O3—C6—C1—C2 | 177.3 (5) |
Br1—C5—C6—C1 | −177.5 (4) | O4—C1—C6—C5 | 178.3 (5) |
Br2—C3—C4—C5 | −176.2 (4) | O4—C1—C2—O5 | 4.4 (6) |
Br2—C3—C4—C7 | −1.7 (5) | O4—C1—C2—C3 | −179.2 (5) |
Br2—C3—C2—O5 | −5.8 (5) | O5—C2—C3—C4 | 176.9 (5) |
Br2—C3—C2—C1 | 177.8 (4) | O5—C2—C1—C6 | −177.5 (5) |
O1—C7—C4—C5 | −96.1 (5) | C4—C5—C6—C1 | 1.4 (6) |
O1—C7—C4—C3 | 89.3 (5) | C4—C3—C2—C1 | 0.5 (6) |
O2—C7—C4—C5 | 83.0 (6) | C5—C6—C1—C2 | 0.2 (6) |
O2—C7—C4—C3 | −91.5 (6) | C3—C2—C1—C6 | −1.2 (6) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···O2i | 0.98 (5) | 1.68 (3) | 2.617 (5) | 160 (5) |
Symmetry code: (i) −x+3/2, y+1/2, −z+1/2. |
Interaction Energies (kJ mol-1) for the symmetry-generated neighbors of
a molecule of DBrTMBA topValues calculated with CrystalExplorer at the
B3LYP/6-31G(d,p) level of theory. el: electrostatic, pol: polarization, disp:
dispersion, rep: repulsion. |
Color code | Symmetry operation | Eel | Epol | Edisp | Erep | Etotal |
Red | -x + 1/2, y + 1/2, -z + 1/2 | -1.1 | -1.0 | -14.0 | 6.1 | -10.3 |
Orange | x + 1/2, -y + 1/2, z + 1/2 | -5.6 | -0.7 | -10.7 | 8.3 | -10.7 |
Light green | x, y, z | -6.3 | -1.5 | -25.8 | 16.2 | -20.2 |
Green | -x, -y, -z | -3.1 | -0.8 | -17.3 | 12.9 | -11.0 |
Cyan | x + 1/2, -y + 1/2, z + 1/2 | -3.3 | -0.3 | -7.3 | 8.7 | -4.7 |
Blue | -x, -y, -z | -9.0 | -2.0 | 37.6 | 22.1 | -30.1 |
Purple | -x + 1/2, y + 1/2, -z + 1/2 | -63.4 | -17.1 | -28.1 | 80.0 | -54.7 |
Pink | -x, -y, -z | -1.8 | -0.4 | -13.8 | 11.4 | -7.1 |