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5-Spiro­fluorenehydantoin derivatives show efflux modulating, cytotoxic and anti­proliferative effects in sensitive and resistant mouse T-lymphoma cells. In order to extend the knowledge available about the pharmacophoric features responsible for the glycoprotein P (P-gp) inhibitory properties of aryl­piperazine derivatives of 3-methyl-5-spiro­fluorenehydantoin, we have performed crystal structure analyses for 1-[3-(3′-methyl-2′,4′-dioxo­spiro­[fluorene-9,5′-imidazolidin]-1′-yl)prop­yl]-4-phenyl­piperazine-1,4-diium dichloride monohydrate, C29H32N4O22+·2Cl·H2O (1), 3′-methyl-1′-{3-[4-(4-nitro­phen­yl)piperazin-1-yl]prop­yl}spiro­[fluorene-9,5′-imidazolidine]-2′,4′-dione, C29H29N5O4·H2O (2), 3′-methyl-1′-{5-[4-(4-nitro­phen­yl)piperazin-1-yl]pent­yl}spiro­[fluorene-9,5′-imidazolidine]-2′,4′-dione, C31H33N5O4 (3), and 1-benzyl-4-[5-(3′-methyl-2′,4′-dioxo­spiro­[fluorene-9,5′-imidazolidin]-1′-yl)pent­yl]­piperazine-1,4-diium dichloride 0.613-hydrate, C32H38N4O22+·2Cl·0.613H2O (4). Structure 3 is anhydrous but the other three structures crystallize with water present. The investigated com­pounds crystallize in the monoclinic crystal system, with the space group P21/n for 1 and 3, and P21/c for 2 and 4. The cations of salts 1 and 4 are doubly protonated, with the protons located on the N atoms of the piperazine rings. The packing of 1 and 4 in the crystals is dominated by inter­molecular N—H...Cl and O—H...Cl hydrogen bonds. In the crystal structure of 2, the inter­molecular inter­actions are dominated by O—H...O and O—H...N hydrogen bonds, while in 3, which is lacking in classic hydrogen-bond donors, it is C—H...O contacts that dominate. Additionally, we have performed induced-fit docking studies for the investigated com­pounds docked to the P-gp human homology model.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S2053229621006756/ky3205sup1.cif
Contains datablocks global, 1, 2, 3, 4

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S2053229621006756/ky32051sup2.hkl
Contains datablock 1

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S2053229621006756/ky32052sup3.hkl
Contains datablock 2

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S2053229621006756/ky32053sup4.hkl
Contains datablock 3

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S2053229621006756/ky32054sup5.hkl
Contains datablock 4

CCDC references: 2093054; 2093053; 2093052; 2093051

Computing details top

Data collection: CrysAlis PRO (Rigaku OD, 2018) for (1), (4); CrysAlis PRO (Rigaku OD, 2015) for (2), (3). Cell refinement: CrysAlis PRO (Rigaku OD, 2018) for (1), (4); CrysAlis PRO (Rigaku OD, 2015) for (2), (3). Data reduction: CrysAlis PRO (Rigaku OD, 2018) for (1), (4); CrysAlis PRO (Rigaku OD, 2015) for (2), (3). For all structures, program(s) used to solve structure: SHELXT (Sheldrick, 2015a); program(s) used to refine structure: SIR2014 (Burla et al., 2015) and SHELXL2018 (Sheldrick, 2015b); molecular graphics: Mercury (Macrae et al., 2020); software used to prepare material for publication: publCIF (Westrip, 2010).

1-[3-(3'-Methyl-2',4'-dioxospiro[fluorene-9,5'-imidazolidin]-1'-yl)propyl]-4-phenylpiperazine-1,4-diium dichloride monohydrate (1) top
Crystal data top
C29H32N4O22+·2Cl·H2OF(000) = 1176
Mr = 557.5Dx = 1.34 Mg m3
Monoclinic, P21/nCu Kα radiation, λ = 1.54184 Å
Hall symbol: -P 2ynCell parameters from 52853 reflections
a = 8.9645 (1) Åθ = 2.6–76.2°
b = 33.8111 (1) ŵ = 2.42 mm1
c = 9.2237 (1) ÅT = 100 K
β = 98.698 (1)°Block, colourless
V = 2763.55 (4) Å30.18 × 0.12 × 0.06 mm
Z = 4
Data collection top
XtaLAB Synergy Dualflex HyPix
diffractometer
5743 independent reflections
Radiation source: micro-focus sealed X-ray tube, PhotonJet (Cu) X-ray Source5436 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.040
ω scansθmax = 76.8°, θmin = 2.6°
Absorption correction: gaussian
(CrysAlis PRO; Rigaku OD, 2018)
h = 1110
Tmin = 0.538, Tmax = 1k = 4242
82562 measured reflectionsl = 1111
Refinement top
Refinement on F22 restraints
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.034H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.094 w = 1/[σ2(Fo2) + (0.0488P)2 + 1.4194P]
where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max = 0.001
5743 reflectionsΔρmax = 0.69 e Å3
352 parametersΔρmin = 0.37 e Å3
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
C140.92416 (15)0.16437 (4)0.96487 (14)0.0181 (3)
C150.84624 (15)0.13821 (4)1.04108 (15)0.0208 (3)
H150.763690.1233610.9920940.025*
C160.89216 (17)0.13418 (4)1.19219 (16)0.0235 (3)
H160.8401790.1164161.2468040.028*
C171.01333 (17)0.15596 (4)1.26315 (15)0.0247 (3)
H171.0430280.1528071.3658040.03*
C181.09202 (16)0.18234 (4)1.18634 (15)0.0225 (3)
H181.1743930.1972321.2353820.027*
C191.04661 (15)0.18625 (4)1.03593 (15)0.0191 (3)
C201.10968 (15)0.21003 (4)0.92608 (15)0.0188 (3)
C211.23306 (16)0.23540 (4)0.94024 (16)0.0223 (3)
H211.2896240.2407881.0337860.027*
C221.27186 (16)0.25276 (4)0.81409 (17)0.0245 (3)
H221.3549790.2704770.8223360.029*
C231.19126 (16)0.24465 (4)0.67639 (16)0.0233 (3)
H231.2208210.2564090.5916070.028*
C241.06689 (16)0.21927 (4)0.66229 (15)0.0203 (3)
H241.0111470.213550.568650.024*
C251.02691 (15)0.20265 (4)0.78810 (15)0.0182 (3)
C50.89401 (15)0.17550 (4)0.80305 (14)0.0177 (3)
C40.74489 (15)0.19889 (4)0.76523 (14)0.0185 (3)
N30.66566 (13)0.18135 (3)0.64444 (13)0.0202 (2)
C20.74346 (15)0.14874 (4)0.59755 (15)0.0194 (3)
N10.86996 (13)0.14342 (3)0.69669 (12)0.0187 (2)
O40.70709 (11)0.22761 (3)0.82960 (11)0.0235 (2)
C260.51580 (16)0.19307 (4)0.57351 (17)0.0259 (3)
H26A0.4801760.2154250.6265840.039*
H26B0.4460780.1707710.5742880.039*
H26C0.5203780.2008820.4719650.039*
O20.70114 (11)0.12952 (3)0.48774 (11)0.0242 (2)
C60.98429 (15)0.11395 (4)0.67694 (15)0.0200 (3)
H6A1.0846050.1239970.7212690.024*
H6B0.985770.1102180.5707090.024*
C70.95679 (15)0.07389 (4)0.74586 (15)0.0206 (3)
H7A1.0427540.0560390.7380320.025*
H7B0.9503980.0775750.8512240.025*
C80.81165 (16)0.05510 (4)0.66982 (15)0.0220 (3)
H8A0.7281140.0743710.6669560.026*
H8B0.8230190.0486080.5674030.026*
N20.77203 (13)0.01816 (3)0.74610 (13)0.0194 (2)
C100.61729 (15)0.00425 (4)0.68391 (16)0.0213 (3)
H10A0.6154850.003680.5803460.026*
H10B0.5443130.0261270.6864210.026*
C110.57137 (15)0.03058 (4)0.77098 (16)0.0219 (3)
H11A0.5645810.0219670.8723650.026*
H11B0.4704460.0400360.7258620.026*
N40.68333 (13)0.06389 (3)0.77508 (13)0.0192 (2)
C130.84061 (15)0.04964 (4)0.82970 (16)0.0208 (3)
H13A0.9130790.0714760.8241240.025*
H13B0.8477250.0415460.9336720.025*
C120.88168 (15)0.01493 (4)0.73938 (16)0.0210 (3)
H12A0.9850320.0057920.7777740.025*
H12B0.8797590.0232810.6362440.025*
C270.63582 (15)0.09757 (4)0.85999 (15)0.0199 (3)
C280.56547 (17)0.12877 (4)0.78161 (16)0.0251 (3)
H280.5518220.1288050.6774430.03*
C290.51484 (18)0.16021 (5)0.85816 (18)0.0299 (3)
H290.466280.1820380.8059740.036*
C300.53466 (17)0.15993 (4)1.00974 (17)0.0277 (3)
H300.501140.1817351.061240.033*
C310.60319 (18)0.12799 (5)1.08673 (17)0.0293 (3)
H310.6155750.1277761.1908540.035*
C320.65391 (18)0.09620 (5)1.01184 (16)0.0272 (3)
H320.7000060.0740111.0636740.033*
O1W0.77434 (15)0.00116 (4)0.37870 (13)0.0389 (3)
H2W0.7670820.0079450.2805680.058*
H1W0.7420380.0275020.3910830.058*
Cl10.75787 (4)0.03266 (2)1.06444 (4)0.02518 (10)
Cl20.67675 (4)0.08565 (2)0.45311 (4)0.02638 (10)
H2N0.773 (2)0.0243 (5)0.847 (2)0.031 (5)*
H4N0.680 (2)0.0728 (6)0.673 (2)0.033 (5)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
C140.0195 (6)0.0159 (6)0.0192 (6)0.0032 (5)0.0036 (5)0.0001 (5)
C150.0200 (6)0.0184 (6)0.0246 (7)0.0014 (5)0.0051 (5)0.0007 (5)
C160.0277 (7)0.0195 (6)0.0250 (7)0.0035 (5)0.0100 (6)0.0041 (5)
C170.0331 (8)0.0230 (7)0.0182 (6)0.0052 (6)0.0051 (6)0.0014 (5)
C180.0251 (7)0.0210 (6)0.0206 (7)0.0018 (5)0.0011 (5)0.0020 (5)
C190.0213 (6)0.0153 (6)0.0208 (6)0.0021 (5)0.0038 (5)0.0003 (5)
C200.0204 (6)0.0155 (6)0.0205 (6)0.0022 (5)0.0034 (5)0.0000 (5)
C210.0224 (7)0.0193 (6)0.0246 (7)0.0012 (5)0.0019 (5)0.0020 (5)
C220.0224 (7)0.0192 (6)0.0325 (8)0.0027 (5)0.0064 (6)0.0013 (5)
C230.0236 (7)0.0207 (6)0.0269 (7)0.0029 (5)0.0082 (5)0.0053 (5)
C240.0210 (6)0.0197 (6)0.0203 (6)0.0036 (5)0.0032 (5)0.0021 (5)
C250.0177 (6)0.0147 (6)0.0222 (6)0.0026 (5)0.0035 (5)0.0004 (5)
C50.0186 (6)0.0153 (6)0.0191 (6)0.0008 (5)0.0023 (5)0.0000 (5)
C40.0192 (6)0.0172 (6)0.0196 (6)0.0006 (5)0.0042 (5)0.0031 (5)
N30.0179 (6)0.0201 (5)0.0220 (6)0.0023 (4)0.0008 (4)0.0003 (4)
C20.0201 (6)0.0187 (6)0.0196 (6)0.0006 (5)0.0038 (5)0.0023 (5)
N10.0191 (5)0.0158 (5)0.0207 (5)0.0008 (4)0.0008 (4)0.0016 (4)
O40.0265 (5)0.0197 (5)0.0246 (5)0.0047 (4)0.0050 (4)0.0004 (4)
C260.0190 (7)0.0268 (7)0.0305 (8)0.0038 (5)0.0007 (6)0.0014 (6)
O20.0258 (5)0.0245 (5)0.0212 (5)0.0006 (4)0.0005 (4)0.0026 (4)
C60.0182 (6)0.0171 (6)0.0252 (7)0.0013 (5)0.0050 (5)0.0006 (5)
C70.0191 (6)0.0181 (6)0.0244 (7)0.0017 (5)0.0023 (5)0.0008 (5)
C80.0229 (7)0.0182 (6)0.0242 (7)0.0007 (5)0.0012 (5)0.0039 (5)
N20.0170 (6)0.0176 (5)0.0230 (6)0.0004 (4)0.0011 (4)0.0018 (4)
C100.0151 (6)0.0201 (6)0.0275 (7)0.0014 (5)0.0003 (5)0.0021 (5)
C110.0166 (6)0.0197 (6)0.0290 (7)0.0016 (5)0.0025 (5)0.0016 (5)
N40.0176 (5)0.0178 (5)0.0219 (6)0.0002 (4)0.0019 (4)0.0007 (4)
C130.0161 (6)0.0192 (6)0.0263 (7)0.0008 (5)0.0004 (5)0.0022 (5)
C120.0159 (6)0.0191 (6)0.0278 (7)0.0011 (5)0.0028 (5)0.0017 (5)
C270.0175 (6)0.0187 (6)0.0231 (7)0.0004 (5)0.0018 (5)0.0030 (5)
C280.0248 (7)0.0247 (7)0.0252 (7)0.0036 (5)0.0023 (6)0.0012 (6)
C290.0306 (8)0.0237 (7)0.0358 (8)0.0070 (6)0.0060 (6)0.0016 (6)
C300.0232 (7)0.0248 (7)0.0359 (8)0.0010 (6)0.0075 (6)0.0079 (6)
C310.0271 (8)0.0362 (8)0.0243 (7)0.0017 (6)0.0025 (6)0.0062 (6)
C320.0287 (8)0.0280 (7)0.0241 (7)0.0055 (6)0.0010 (6)0.0011 (6)
O1W0.0441 (7)0.0406 (7)0.0321 (6)0.0012 (5)0.0062 (5)0.0050 (5)
Cl10.02299 (18)0.02942 (18)0.02331 (17)0.00030 (12)0.00411 (13)0.00027 (12)
Cl20.03159 (19)0.02725 (18)0.02142 (17)0.00011 (13)0.00765 (13)0.00322 (12)
Geometric parameters (Å, º) top
C14—C151.3832 (19)C6—H6B0.99
C14—C191.4015 (19)C7—C81.5207 (19)
C14—C51.5233 (18)C7—H7A0.99
C15—C161.399 (2)C7—H7B0.99
C15—H150.95C8—N21.5023 (17)
C16—C171.391 (2)C8—H8A0.99
C16—H160.95C8—H8B0.99
C17—C181.395 (2)N2—C101.4945 (17)
C17—H170.95N2—C121.4966 (17)
C18—C191.3918 (19)N2—H2N0.95 (2)
C18—H180.95C10—C111.5169 (19)
C19—C201.4718 (18)C10—H10A0.99
C20—C211.3902 (19)C10—H10B0.99
C20—C251.3953 (19)C11—N41.5054 (17)
C21—C221.393 (2)C11—H11A0.99
C21—H210.95C11—H11B0.99
C22—C231.390 (2)N4—C271.4808 (17)
C22—H220.95N4—C131.5031 (17)
C23—C241.397 (2)N4—H4N0.98 (2)
C23—H230.95C13—C121.5163 (18)
C24—C251.3844 (19)C13—H13A0.99
C24—H240.95C13—H13B0.99
C25—C51.5266 (18)C12—H12A0.99
C5—N11.4566 (16)C12—H12B0.99
C5—C41.5470 (18)C27—C281.377 (2)
C4—O41.2129 (16)C27—C321.386 (2)
C4—N31.3632 (18)C28—C291.390 (2)
N3—C21.4072 (17)C28—H280.95
N3—C261.4573 (17)C29—C301.383 (2)
C2—O21.2148 (17)C29—H290.95
C2—N11.3568 (18)C30—C311.384 (2)
N1—C61.4605 (16)C30—H300.95
C26—H26A0.98C31—C321.391 (2)
C26—H26B0.98C31—H310.95
C26—H26C0.98C32—H320.95
C6—C71.5320 (18)O1W—H2W0.9489
C6—H6A0.99O1W—H1W0.9488
C15—C14—C19121.33 (12)C8—C7—H7A109.4
C15—C14—C5128.87 (12)C6—C7—H7A109.4
C19—C14—C5109.77 (11)C8—C7—H7B109.4
C14—C15—C16118.26 (13)C6—C7—H7B109.4
C14—C15—H15120.9H7A—C7—H7B108
C16—C15—H15120.9N2—C8—C7112.19 (11)
C17—C16—C15120.55 (13)N2—C8—H8A109.2
C17—C16—H16119.7C7—C8—H8A109.2
C15—C16—H16119.7N2—C8—H8B109.2
C16—C17—C18121.22 (13)C7—C8—H8B109.2
C16—C17—H17119.4H8A—C8—H8B107.9
C18—C17—H17119.4C10—N2—C12109.04 (10)
C19—C18—C17118.22 (13)C10—N2—C8110.68 (10)
C19—C18—H18120.9C12—N2—C8113.51 (11)
C17—C18—H18120.9C10—N2—H2N108.3 (12)
C18—C19—C14120.42 (13)C12—N2—H2N107.1 (11)
C18—C19—C20130.79 (13)C8—N2—H2N108.0 (11)
C14—C19—C20108.76 (12)N2—C10—C11110.58 (11)
C21—C20—C25120.12 (12)N2—C10—H10A109.5
C21—C20—C19130.96 (13)C11—C10—H10A109.5
C25—C20—C19108.88 (12)N2—C10—H10B109.5
C20—C21—C22118.49 (13)C11—C10—H10B109.5
C20—C21—H21120.8H10A—C10—H10B108.1
C22—C21—H21120.8N4—C11—C10111.15 (11)
C23—C22—C21121.25 (13)N4—C11—H11A109.4
C23—C22—H22119.4C10—C11—H11A109.4
C21—C22—H22119.4N4—C11—H11B109.4
C22—C23—C24120.22 (13)C10—C11—H11B109.4
C22—C23—H23119.9H11A—C11—H11B108
C24—C23—H23119.9C27—N4—C13113.55 (10)
C25—C24—C23118.38 (13)C27—N4—C11110.17 (10)
C25—C24—H24120.8C13—N4—C11110.89 (10)
C23—C24—H24120.8C27—N4—H4N107.5 (11)
C24—C25—C20121.51 (13)C13—N4—H4N108.2 (11)
C24—C25—C5128.62 (12)C11—N4—H4N106.3 (11)
C20—C25—C5109.86 (11)N4—C13—C12110.94 (11)
N1—C5—C14117.53 (11)N4—C13—H13A109.5
N1—C5—C25115.15 (11)C12—C13—H13A109.5
C14—C5—C25102.23 (10)N4—C13—H13B109.5
N1—C5—C4101.19 (10)C12—C13—H13B109.5
C14—C5—C4111.50 (10)H13A—C13—H13B108
C25—C5—C4109.38 (10)N2—C12—C13109.89 (11)
O4—C4—N3126.79 (13)N2—C12—H12A109.7
O4—C4—C5126.49 (12)C13—C12—H12A109.7
N3—C4—C5106.71 (11)N2—C12—H12B109.7
C4—N3—C2111.77 (11)C13—C12—H12B109.7
C4—N3—C26125.43 (12)H12A—C12—H12B108.2
C2—N3—C26122.75 (11)C28—C27—C32122.05 (13)
O2—C2—N1127.93 (13)C28—C27—N4117.20 (12)
O2—C2—N3124.65 (13)C32—C27—N4120.64 (12)
N1—C2—N3107.42 (11)C27—C28—C29118.56 (14)
C2—N1—C5112.25 (11)C27—C28—H28120.7
C2—N1—C6122.49 (11)C29—C28—H28120.7
C5—N1—C6123.85 (11)C30—C29—C28120.45 (14)
N3—C26—H26A109.5C30—C29—H29119.8
N3—C26—H26B109.5C28—C29—H29119.8
H26A—C26—H26B109.5C29—C30—C31120.21 (14)
N3—C26—H26C109.5C29—C30—H30119.9
H26A—C26—H26C109.5C31—C30—H30119.9
H26B—C26—H26C109.5C30—C31—C32120.08 (14)
N1—C6—C7113.05 (11)C30—C31—H31120
N1—C6—H6A109C32—C31—H31120
C7—C6—H6A109C27—C32—C31118.62 (14)
N1—C6—H6B109C27—C32—H32120.7
C7—C6—H6B109C31—C32—H32120.7
H6A—C6—H6B107.8H2W—O1W—H1W116.2
C8—C7—C6110.98 (11)
C19—C14—C15—C160.35 (19)C5—C4—N3—C20.52 (14)
C5—C14—C15—C16177.28 (12)O4—C4—N3—C262.9 (2)
C14—C15—C16—C170.1 (2)C5—C4—N3—C26178.02 (12)
C15—C16—C17—C180.1 (2)C4—N3—C2—O2175.58 (13)
C16—C17—C18—C190.3 (2)C26—N3—C2—O26.8 (2)
C17—C18—C19—C140.5 (2)C4—N3—C2—N14.60 (15)
C17—C18—C19—C20177.31 (13)C26—N3—C2—N1172.97 (12)
C15—C14—C19—C180.6 (2)O2—C2—N1—C5171.99 (13)
C5—C14—C19—C18177.48 (12)N3—C2—N1—C58.20 (15)
C15—C14—C19—C20177.70 (12)O2—C2—N1—C65.1 (2)
C5—C14—C19—C204.26 (14)N3—C2—N1—C6175.11 (11)
C18—C19—C20—C210.2 (2)C14—C5—N1—C2129.72 (12)
C14—C19—C20—C21177.82 (14)C25—C5—N1—C2109.72 (13)
C18—C19—C20—C25177.72 (14)C4—C5—N1—C28.09 (14)
C14—C19—C20—C250.29 (15)C14—C5—N1—C663.58 (16)
C25—C20—C21—C220.5 (2)C25—C5—N1—C656.99 (16)
C19—C20—C21—C22176.77 (13)C4—C5—N1—C6174.79 (11)
C20—C21—C22—C231.0 (2)C2—N1—C6—C791.18 (15)
C21—C22—C23—C241.2 (2)C5—N1—C6—C7103.44 (14)
C22—C23—C24—C250.0 (2)N1—C6—C7—C864.84 (15)
C23—C24—C25—C201.50 (19)C6—C7—C8—N2173.22 (11)
C23—C24—C25—C5177.56 (12)C7—C8—N2—C10170.67 (11)
C21—C20—C25—C241.8 (2)C7—C8—N2—C1266.34 (15)
C19—C20—C25—C24176.06 (12)C12—N2—C10—C1160.15 (14)
C21—C20—C25—C5177.44 (12)C8—N2—C10—C11174.31 (11)
C19—C20—C25—C54.72 (14)N2—C10—C11—N456.83 (15)
C15—C14—C5—N148.36 (19)C10—C11—N4—C27179.75 (11)
C19—C14—C5—N1133.79 (12)C10—C11—N4—C1353.68 (15)
C15—C14—C5—C25175.47 (13)C27—N4—C13—C12179.40 (11)
C19—C14—C5—C256.68 (13)C11—N4—C13—C1254.72 (14)
C15—C14—C5—C467.77 (17)C10—N2—C12—C1360.93 (14)
C19—C14—C5—C4110.08 (12)C8—N2—C12—C13175.18 (11)
C24—C25—C5—N145.36 (18)N4—C13—C12—N258.67 (14)
C20—C25—C5—N1135.50 (12)C13—N4—C27—C28134.47 (13)
C24—C25—C5—C14173.98 (13)C11—N4—C27—C28100.48 (14)
C20—C25—C5—C146.88 (13)C13—N4—C27—C3249.37 (17)
C24—C25—C5—C467.74 (17)C11—N4—C27—C3275.69 (16)
C20—C25—C5—C4111.40 (12)C32—C27—C28—C291.7 (2)
N1—C5—C4—O4175.98 (13)N4—C27—C28—C29177.79 (13)
C14—C5—C4—O450.23 (17)C27—C28—C29—C300.2 (2)
C25—C5—C4—O462.10 (17)C28—C29—C30—C311.0 (2)
N1—C5—C4—N34.96 (13)C29—C30—C31—C320.7 (2)
C14—C5—C4—N3130.71 (11)C28—C27—C32—C312.0 (2)
C25—C5—C4—N3116.96 (12)N4—C27—C32—C31177.94 (13)
O4—C4—N3—C2179.58 (13)C30—C31—C32—C270.7 (2)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N2—H2N···Cl10.95 (2)2.05 (2)2.999 (1)174 (2)
N4—H4N···Cl20.98 (2)2.07 (2)3.051 (1)174 (2)
C8—H8A···O20.992.483.103 (2)121
C8—H8B···O1W0.992.413.266 (2)144
C10—H10A···O1W0.992.513.338 (2)141
C10—H10B···Cl2i0.992.983.887 (1)153
C11—H11A···Cl10.992.943.650 (2)130
C11—H11B···O1Wi0.992.653.372 (2)130
C12—H12A···Cl1ii0.992.693.508 (1)140
C12—H12B···O1W0.992.533.353 (2)140
C13—H13B···Cl10.992.953.670 (1)131
C28—H28···O2i0.952.533.176 (2)125
C28—H28···Cl20.952.893.635 (2)136
O1W—H2W···Cl1iii0.952.153.099 (1)176
O1W—H1W···Cl20.952.153.095 (1)172
Symmetry codes: (i) x+1, y, z+1; (ii) x+2, y, z+2; (iii) x, y, z1.
3'-Methyl-1'-{3-[4-(4-nitrophenyl)piperazin-1-yl]propyl}spiro[fluorene-9,5'-\ imidazolidine]-2',4'-dione monohydrate (2) top
Crystal data top
C29H29N5O4·H2OF(000) = 1120
Mr = 529.59Dx = 1.372 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 12039 reflections
a = 21.7033 (5) Åθ = 3.4–28.4°
b = 7.2190 (2) ŵ = 0.10 mm1
c = 16.8210 (4) ÅT = 130 K
β = 103.464 (2)°Plate, light yellow
V = 2563.02 (11) Å30.66 × 0.39 × 0.02 mm
Z = 4
Data collection top
Rigaku OD SuperNova Dual source
diffractometer with an Atlas detector
6229 independent reflections
Radiation source: micro-focus sealed X-ray tube, SuperNova (Mo) X-ray Source4715 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.038
Detector resolution: 10.3756 pixels mm-1θmax = 28.6°, θmin = 2.9°
ω scansh = 2928
Absorption correction: gaussian
(CrysAlis PRO; Rigaku OD, 2015)
k = 99
Tmin = 0.963, Tmax = 0.997l = 2222
34285 measured reflections
Refinement top
Refinement on F22 restraints
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.049H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.129 w = 1/[σ2(Fo2) + (0.0474P)2 + 1.8477P]
where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
6229 reflectionsΔρmax = 0.31 e Å3
361 parametersΔρmin = 0.31 e Å3
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
C250.93922 (8)0.2454 (2)0.58121 (10)0.0222 (3)
C240.97090 (8)0.3240 (3)0.65422 (11)0.0289 (4)
H240.9512320.3335530.6989450.035*
C231.03215 (9)0.3887 (3)0.66075 (11)0.0304 (4)
H231.0543470.4454810.7100740.036*
C221.06124 (8)0.3711 (3)0.59579 (11)0.0268 (4)
H221.1034130.4142440.6016880.032*
C211.02982 (8)0.2917 (2)0.52252 (10)0.0232 (3)
H211.0499670.2796970.4783330.028*
C200.96816 (8)0.2300 (2)0.51535 (10)0.0204 (3)
C190.92261 (8)0.1466 (2)0.44602 (10)0.0204 (3)
C180.92729 (8)0.1094 (2)0.36665 (10)0.0244 (4)
H180.9650750.1363070.3495570.029*
C170.87522 (9)0.0318 (3)0.31284 (10)0.0269 (4)
H170.8774730.0069580.2581290.032*
C160.82003 (8)0.0100 (2)0.33738 (10)0.0257 (4)
H160.7850760.0627690.299440.031*
C150.81561 (8)0.0248 (2)0.41715 (10)0.0232 (3)
H150.7783050.0059990.4346440.028*
C140.86668 (8)0.1053 (2)0.47032 (9)0.0206 (3)
C50.87269 (8)0.1639 (2)0.55889 (10)0.0217 (3)
C40.86604 (8)0.0014 (3)0.61513 (10)0.0238 (4)
C20.79243 (8)0.2217 (3)0.62804 (10)0.0255 (4)
C260.79915 (9)0.0657 (3)0.71382 (12)0.0363 (5)
H26A0.8260150.1761050.7252060.054*
H26B0.7549410.1032050.6929430.054*
H26C0.8029180.0058290.7642570.054*
C60.81251 (8)0.4756 (2)0.53823 (11)0.0258 (4)
H6A0.8541410.5317850.5383540.031*
H6B0.7925460.5511970.5744790.031*
C70.77102 (8)0.4839 (2)0.45158 (11)0.0263 (4)
H7A0.7698070.6129410.4313390.032*
H7B0.7900690.4055950.4153160.032*
C80.70356 (8)0.4183 (3)0.44736 (11)0.0266 (4)
H8A0.7048020.2877710.4657670.032*
H8B0.6852450.4934280.4853940.032*
C120.67480 (8)0.2845 (3)0.31055 (11)0.0265 (4)
H12A0.6659450.1627430.3325440.032*
H12B0.7201120.2873930.3090040.032*
C130.63437 (8)0.3069 (3)0.22466 (11)0.0285 (4)
H13A0.6482620.4187450.19960.034*
H13B0.6409150.1985750.1914620.034*
C110.55172 (8)0.4423 (3)0.28655 (11)0.0282 (4)
H11A0.5076670.4183290.2907170.034*
H11B0.5545290.5736740.2708770.034*
C100.59606 (8)0.4097 (3)0.36884 (11)0.0265 (4)
H10A0.58620.4985550.4089750.032*
H10B0.5895570.2829770.3878290.032*
C270.52397 (8)0.3218 (2)0.14778 (11)0.0255 (4)
C320.54045 (9)0.2488 (3)0.07752 (11)0.0310 (4)
H320.5824790.2068450.0810160.037*
C310.49647 (10)0.2377 (3)0.00427 (12)0.0331 (4)
H310.5082060.1873460.042260.04*
C300.43560 (9)0.2991 (3)0.00199 (11)0.0313 (4)
C290.41760 (9)0.3761 (3)0.06469 (12)0.0331 (4)
H290.375540.4194880.059680.04*
C280.46140 (9)0.3889 (3)0.13823 (11)0.0291 (4)
H280.4493530.4439920.1836190.035*
N30.81923 (7)0.0475 (2)0.65325 (9)0.0259 (3)
N10.82275 (6)0.2884 (2)0.57175 (8)0.0229 (3)
N20.66220 (7)0.4319 (2)0.36474 (9)0.0242 (3)
N40.56639 (7)0.3236 (2)0.22272 (9)0.0257 (3)
N50.38947 (9)0.2818 (3)0.07882 (11)0.0412 (4)
O40.89677 (6)0.14016 (18)0.62492 (8)0.0308 (3)
O20.75032 (6)0.2941 (2)0.65303 (8)0.0333 (3)
O30.40684 (8)0.2162 (3)0.13807 (9)0.0545 (4)
O10.33503 (8)0.3325 (3)0.08277 (10)0.0614 (5)
OW0.67803 (8)0.8013 (2)0.30476 (10)0.0461 (4)
H2W0.6695 (15)0.673 (2)0.3251 (18)0.092 (11)*
H1W0.6549 (14)0.798 (5)0.2445 (8)0.100 (11)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
C250.0184 (8)0.0265 (9)0.0218 (8)0.0013 (6)0.0047 (6)0.0004 (7)
C240.0263 (9)0.0393 (10)0.0217 (8)0.0016 (8)0.0065 (7)0.0055 (7)
C230.0263 (9)0.0360 (10)0.0257 (9)0.0002 (8)0.0005 (7)0.0065 (8)
C220.0184 (8)0.0292 (9)0.0312 (9)0.0003 (7)0.0026 (7)0.0014 (7)
C210.0217 (8)0.0246 (8)0.0245 (8)0.0014 (7)0.0078 (7)0.0033 (7)
C200.0216 (8)0.0206 (8)0.0188 (8)0.0016 (6)0.0046 (6)0.0015 (6)
C190.0222 (8)0.0197 (8)0.0197 (8)0.0003 (6)0.0053 (6)0.0019 (6)
C180.0265 (9)0.0274 (9)0.0207 (8)0.0010 (7)0.0081 (7)0.0016 (7)
C170.0330 (9)0.0298 (9)0.0179 (8)0.0002 (7)0.0060 (7)0.0008 (7)
C160.0257 (9)0.0251 (9)0.0239 (8)0.0009 (7)0.0007 (7)0.0035 (7)
C150.0213 (8)0.0233 (8)0.0253 (8)0.0007 (7)0.0060 (6)0.0003 (7)
C140.0226 (8)0.0221 (8)0.0179 (7)0.0016 (6)0.0060 (6)0.0012 (6)
C50.0196 (8)0.0279 (9)0.0182 (8)0.0012 (6)0.0055 (6)0.0007 (6)
C40.0218 (8)0.0317 (9)0.0176 (8)0.0012 (7)0.0037 (6)0.0003 (7)
C20.0192 (8)0.0374 (10)0.0194 (8)0.0013 (7)0.0032 (6)0.0029 (7)
C260.0287 (10)0.0532 (13)0.0295 (10)0.0024 (9)0.0118 (8)0.0136 (9)
C60.0239 (9)0.0239 (9)0.0296 (9)0.0018 (7)0.0062 (7)0.0031 (7)
C70.0251 (9)0.0248 (9)0.0287 (9)0.0011 (7)0.0058 (7)0.0030 (7)
C80.0248 (9)0.0278 (9)0.0276 (9)0.0001 (7)0.0069 (7)0.0006 (7)
C120.0206 (8)0.0285 (9)0.0309 (9)0.0024 (7)0.0075 (7)0.0002 (7)
C130.0228 (9)0.0347 (10)0.0295 (9)0.0019 (7)0.0090 (7)0.0022 (8)
C110.0210 (9)0.0329 (10)0.0315 (9)0.0023 (7)0.0079 (7)0.0052 (8)
C100.0238 (9)0.0271 (9)0.0307 (9)0.0002 (7)0.0102 (7)0.0027 (7)
C270.0263 (9)0.0215 (8)0.0299 (9)0.0032 (7)0.0091 (7)0.0020 (7)
C320.0265 (9)0.0353 (10)0.0325 (10)0.0003 (8)0.0096 (8)0.0001 (8)
C310.0396 (11)0.0329 (10)0.0290 (9)0.0038 (8)0.0126 (8)0.0013 (8)
C300.0350 (10)0.0283 (9)0.0284 (9)0.0022 (8)0.0028 (8)0.0066 (8)
C290.0279 (10)0.0311 (10)0.0388 (11)0.0032 (8)0.0047 (8)0.0069 (8)
C280.0276 (9)0.0286 (9)0.0318 (9)0.0019 (7)0.0084 (7)0.0011 (8)
N30.0211 (7)0.0363 (8)0.0217 (7)0.0009 (6)0.0075 (6)0.0039 (6)
N10.0201 (7)0.0274 (7)0.0228 (7)0.0012 (6)0.0077 (5)0.0007 (6)
N20.0211 (7)0.0259 (7)0.0262 (7)0.0014 (6)0.0066 (6)0.0001 (6)
N40.0212 (7)0.0288 (8)0.0282 (8)0.0014 (6)0.0078 (6)0.0032 (6)
N50.0436 (11)0.0428 (10)0.0338 (9)0.0016 (8)0.0019 (8)0.0096 (8)
O40.0339 (7)0.0317 (7)0.0277 (7)0.0066 (6)0.0092 (5)0.0048 (5)
O20.0251 (7)0.0458 (8)0.0328 (7)0.0053 (6)0.0143 (5)0.0008 (6)
O30.0618 (11)0.0663 (11)0.0311 (8)0.0026 (9)0.0021 (7)0.0008 (8)
O10.0432 (10)0.0851 (14)0.0484 (10)0.0067 (9)0.0048 (8)0.0085 (9)
OW0.0462 (9)0.0401 (9)0.0508 (10)0.0097 (7)0.0085 (7)0.0026 (7)
Geometric parameters (Å, º) top
C25—C241.382 (2)C6—H6B0.99
C25—C201.399 (2)C7—C81.525 (2)
C25—C51.523 (2)C7—H7A0.99
C24—C231.389 (3)C7—H7B0.99
C24—H240.95C8—N21.472 (2)
C23—C221.389 (3)C8—H8A0.99
C23—H230.95C8—H8B0.99
C22—C211.386 (2)C12—N21.467 (2)
C22—H220.95C12—C131.514 (2)
C21—C201.389 (2)C12—H12A0.99
C21—H210.95C12—H12B0.99
C20—C191.471 (2)C13—N41.473 (2)
C19—C181.389 (2)C13—H13A0.99
C19—C141.400 (2)C13—H13B0.99
C18—C171.391 (2)C11—N41.466 (2)
C18—H180.95C11—C101.509 (2)
C17—C161.388 (2)C11—H11A0.99
C17—H170.95C11—H11B0.99
C16—C151.390 (2)C10—N21.462 (2)
C16—H160.95C10—H10A0.99
C15—C141.380 (2)C10—H10B0.99
C15—H150.95C27—N41.377 (2)
C14—C51.525 (2)C27—C321.414 (2)
C5—N11.462 (2)C27—C281.415 (2)
C5—C41.535 (2)C32—C311.374 (3)
C4—O41.210 (2)C32—H320.95
C4—N31.363 (2)C31—C301.374 (3)
C2—O21.210 (2)C31—H310.95
C2—N11.361 (2)C30—C291.387 (3)
C2—N31.408 (2)C30—N51.444 (2)
C26—N31.450 (2)C29—C281.377 (3)
C26—H26A0.98C29—H290.95
C26—H26B0.98C28—H280.95
C26—H26C0.98N5—O11.224 (2)
C6—N11.461 (2)N5—O31.239 (2)
C6—C71.526 (2)OW—H2W1.019 (10)
C6—H6A0.99OW—H1W1.021 (10)
C24—C25—C20120.93 (16)H7A—C7—H7B107.9
C24—C25—C5128.65 (15)N2—C8—C7113.02 (14)
C20—C25—C5110.41 (14)N2—C8—H8A109
C25—C24—C23118.50 (16)C7—C8—H8A109
C25—C24—H24120.7N2—C8—H8B109
C23—C24—H24120.7C7—C8—H8B109
C24—C23—C22120.59 (16)H8A—C8—H8B107.8
C24—C23—H23119.7N2—C12—C13111.41 (14)
C22—C23—H23119.7N2—C12—H12A109.3
C21—C22—C23121.18 (16)C13—C12—H12A109.3
C21—C22—H22119.4N2—C12—H12B109.3
C23—C22—H22119.4C13—C12—H12B109.3
C22—C21—C20118.32 (15)H12A—C12—H12B108
C22—C21—H21120.8N4—C13—C12112.63 (14)
C20—C21—H21120.8N4—C13—H13A109.1
C21—C20—C25120.46 (15)C12—C13—H13A109.1
C21—C20—C19131.03 (15)N4—C13—H13B109.1
C25—C20—C19108.50 (14)C12—C13—H13B109.1
C18—C19—C14120.14 (15)H13A—C13—H13B107.8
C18—C19—C20130.94 (15)N4—C11—C10112.32 (14)
C14—C19—C20108.92 (14)N4—C11—H11A109.1
C19—C18—C17118.25 (15)C10—C11—H11A109.1
C19—C18—H18120.9N4—C11—H11B109.1
C17—C18—H18120.9C10—C11—H11B109.1
C16—C17—C18121.39 (15)H11A—C11—H11B107.9
C16—C17—H17119.3N2—C10—C11111.29 (14)
C18—C17—H17119.3N2—C10—H10A109.4
C17—C16—C15120.39 (16)C11—C10—H10A109.4
C17—C16—H16119.8N2—C10—H10B109.4
C15—C16—H16119.8C11—C10—H10B109.4
C14—C15—C16118.43 (15)H10A—C10—H10B108
C14—C15—H15120.8N4—C27—C32121.54 (16)
C16—C15—H15120.8N4—C27—C28121.34 (16)
C15—C14—C19121.37 (15)C32—C27—C28117.09 (17)
C15—C14—C5128.54 (15)C31—C32—C27120.88 (18)
C19—C14—C5110.09 (14)C31—C32—H32119.6
N1—C5—C25114.76 (14)C27—C32—H32119.6
N1—C5—C14114.66 (13)C32—C31—C30120.30 (18)
C25—C5—C14102.03 (12)C32—C31—H31119.8
N1—C5—C4101.50 (12)C30—C31—H31119.8
C25—C5—C4111.30 (13)C31—C30—C29120.94 (18)
C14—C5—C4113.03 (14)C31—C30—N5119.64 (18)
O4—C4—N3126.14 (16)C29—C30—N5119.42 (18)
O4—C4—C5126.97 (15)C28—C29—C30119.21 (18)
N3—C4—C5106.88 (14)C28—C29—H29120.4
O2—C2—N1127.99 (18)C30—C29—H29120.4
O2—C2—N3124.98 (16)C29—C28—C27121.52 (17)
N1—C2—N3107.03 (14)C29—C28—H28119.2
N3—C26—H26A109.5C27—C28—H28119.2
N3—C26—H26B109.5C4—N3—C2112.17 (14)
H26A—C26—H26B109.5C4—N3—C26124.86 (16)
N3—C26—H26C109.5C2—N3—C26122.96 (15)
H26A—C26—H26C109.5C2—N1—C6122.76 (14)
H26B—C26—H26C109.5C2—N1—C5112.36 (14)
N1—C6—C7114.07 (14)C6—N1—C5124.25 (13)
N1—C6—H6A108.7C10—N2—C12106.08 (13)
C7—C6—H6A108.7C10—N2—C8109.75 (13)
N1—C6—H6B108.7C12—N2—C8112.16 (14)
C7—C6—H6B108.7C27—N4—C11117.57 (14)
H6A—C6—H6B107.6C27—N4—C13118.18 (14)
C8—C7—C6112.27 (14)C11—N4—C13114.77 (14)
C8—C7—H7A109.2O1—N5—O3122.78 (18)
C6—C7—H7A109.2O1—N5—C30118.83 (18)
C8—C7—H7B109.2O3—N5—C30118.39 (18)
C6—C7—H7B109.2H2W—OW—H1W103 (3)
C20—C25—C24—C230.4 (3)N4—C27—C32—C31176.01 (17)
C5—C25—C24—C23179.56 (17)C28—C27—C32—C312.4 (3)
C25—C24—C23—C221.3 (3)C27—C32—C31—C300.5 (3)
C24—C23—C22—C211.1 (3)C32—C31—C30—C291.1 (3)
C23—C22—C21—C200.1 (3)C32—C31—C30—N5178.29 (17)
C22—C21—C20—C251.1 (2)C31—C30—C29—C280.7 (3)
C22—C21—C20—C19177.90 (17)N5—C30—C29—C28178.70 (17)
C24—C25—C20—C210.8 (3)C30—C29—C28—C271.3 (3)
C5—C25—C20—C21178.50 (15)N4—C27—C28—C29175.60 (17)
C24—C25—C20—C19178.38 (16)C32—C27—C28—C292.8 (3)
C5—C25—C20—C192.33 (19)O4—C4—N3—C2179.64 (17)
C21—C20—C19—C182.0 (3)C5—C4—N3—C21.17 (19)
C25—C20—C19—C18177.09 (17)O4—C4—N3—C261.3 (3)
C21—C20—C19—C14178.96 (17)C5—C4—N3—C26177.93 (16)
C25—C20—C19—C141.99 (19)O2—C2—N3—C4179.69 (17)
C14—C19—C18—C170.3 (3)N1—C2—N3—C40.37 (19)
C20—C19—C18—C17178.68 (17)O2—C2—N3—C260.6 (3)
C19—C18—C17—C160.8 (3)N1—C2—N3—C26179.48 (16)
C18—C17—C16—C150.1 (3)O2—C2—N1—C67.0 (3)
C17—C16—C15—C141.4 (3)N3—C2—N1—C6173.10 (14)
C16—C15—C14—C191.9 (3)O2—C2—N1—C5178.19 (17)
C16—C15—C14—C5177.38 (16)N3—C2—N1—C51.87 (19)
C18—C19—C14—C151.0 (3)C7—C6—N1—C2103.91 (18)
C20—C19—C14—C15179.80 (15)C7—C6—N1—C585.91 (19)
C18—C19—C14—C5178.35 (15)C25—C5—N1—C2117.69 (16)
C20—C19—C14—C50.85 (19)C14—C5—N1—C2124.64 (15)
C24—C25—C5—N154.4 (2)C4—C5—N1—C22.44 (17)
C20—C25—C5—N1126.36 (15)C25—C5—N1—C653.4 (2)
C24—C25—C5—C14179.03 (18)C14—C5—N1—C664.3 (2)
C20—C25—C5—C141.75 (18)C4—C5—N1—C6173.52 (14)
C24—C25—C5—C460.1 (2)C11—C10—N2—C1264.45 (18)
C20—C25—C5—C4119.08 (15)C11—C10—N2—C8174.18 (15)
C15—C14—C5—N154.1 (2)C13—C12—N2—C1063.31 (18)
C19—C14—C5—N1125.18 (15)C13—C12—N2—C8176.88 (14)
C15—C14—C5—C25178.80 (17)C7—C8—N2—C10166.56 (15)
C19—C14—C5—C250.50 (18)C7—C8—N2—C1275.80 (18)
C15—C14—C5—C461.6 (2)C32—C27—N4—C11164.67 (16)
C19—C14—C5—C4119.12 (15)C28—C27—N4—C1117.0 (2)
N1—C5—C4—O4178.72 (17)C32—C27—N4—C1320.0 (2)
C25—C5—C4—O458.7 (2)C28—C27—N4—C13161.65 (16)
C14—C5—C4—O455.4 (2)C10—C11—N4—C27171.09 (15)
N1—C5—C4—N32.10 (17)C10—C11—N4—C1343.1 (2)
C25—C5—C4—N3120.45 (15)C12—C13—N4—C27172.22 (15)
C14—C5—C4—N3125.41 (15)C12—C13—N4—C1142.1 (2)
N1—C6—C7—C864.34 (19)C31—C30—N5—O1178.00 (19)
C6—C7—C8—N2177.84 (14)C29—C30—N5—O11.4 (3)
N2—C12—C13—N453.0 (2)C31—C30—N5—O32.1 (3)
N4—C11—C10—N255.2 (2)C29—C30—N5—O3178.54 (19)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
C13—H13B···O2i0.992.63.119 (2)113
C26—H26B···O1ii0.982.43.300 (3)152
OW—H2W···N21.02 (1)1.88 (1)2.900 (2)175 (3)
OW—H1W···O3iii1.02 (1)1.97 (1)2.978 (2)167 (3)
Symmetry codes: (i) x, y+1/2, z1/2; (ii) x+1, y1/2, z+1/2; (iii) x+1, y+1, z.
3'-Methyl-1'-{5-[4-(4-nitrophenyl)piperazin-1-yl]pentyl}spiro[fluorene-9,5'-imidazolidine]-2',4'-dione (3) top
Crystal data top
C31H33N5O4F(000) = 1144
Mr = 539.62Dx = 1.31 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 6350 reflections
a = 8.8799 (2) Åθ = 2.9–28.6°
b = 23.5550 (5) ŵ = 0.09 mm1
c = 13.2498 (3) ÅT = 130 K
β = 99.072 (3)°Irregular, orange
V = 2736.74 (11) Å30.34 × 0.18 × 0.13 mm
Z = 4
Data collection top
Rigaku OD SuperNova Dual source
diffractometer with an Atlas detector
6418 independent reflections
Radiation source: micro-focus sealed X-ray tube, SuperNova (Mo) X-ray Source4351 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.050
Detector resolution: 10.3756 pixels mm-1θmax = 28.6°, θmin = 2.9°
ω scansh = 1111
Absorption correction: gaussian
(CrysAlis PRO; Rigaku OD, 2015)
k = 3027
Tmin = 0.982, Tmax = 0.991l = 1717
22381 measured reflections
Refinement top
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.054H-atom parameters constrained
wR(F2) = 0.145 w = 1/[σ2(Fo2) + (0.0565P)2 + 0.7052P]
where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
6418 reflectionsΔρmax = 0.26 e Å3
362 parametersΔρmin = 0.24 e Å3
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
C140.3359 (2)0.34448 (7)0.11271 (14)0.0291 (4)
C150.2007 (2)0.37384 (8)0.11229 (15)0.0362 (5)
H150.1125760.3552660.1284130.043*
C160.1975 (3)0.43136 (9)0.08758 (16)0.0444 (6)
H160.1055080.4522520.0854680.053*
C170.3268 (3)0.45819 (9)0.06618 (17)0.0501 (6)
H170.3227840.4975250.0501810.06*
C180.4635 (3)0.42871 (9)0.06756 (17)0.0470 (6)
H180.5520470.4475440.0527880.056*
C190.4669 (2)0.37136 (8)0.09094 (15)0.0355 (5)
C200.5924 (2)0.32949 (8)0.10053 (15)0.0356 (5)
C210.7439 (3)0.33353 (10)0.08571 (18)0.0473 (6)
H210.7851570.3688070.0685120.057*
C220.8332 (3)0.28502 (11)0.09660 (19)0.0511 (6)
H220.9356390.2872410.0843690.061*
C230.7781 (2)0.23360 (10)0.12465 (17)0.0447 (6)
H230.8421380.2010780.1318930.054*
C240.6287 (2)0.22963 (9)0.14220 (16)0.0361 (5)
H240.5900440.1947270.1633420.043*
C250.5369 (2)0.27727 (8)0.12846 (15)0.0303 (4)
C50.3695 (2)0.28268 (7)0.14026 (14)0.0273 (4)
C40.3473 (2)0.26910 (8)0.25074 (15)0.0307 (4)
C20.1975 (2)0.20788 (8)0.14417 (15)0.0282 (4)
C260.1948 (3)0.19863 (10)0.33286 (17)0.0460 (6)
H26A0.2416980.1610260.344140.069*
H26B0.0836140.1946820.3195260.069*
H26C0.2243770.222150.3937750.069*
C60.2264 (2)0.24001 (8)0.02878 (14)0.0288 (4)
H6A0.2051840.2792310.0539140.035*
H6B0.1316220.2176810.0471330.035*
C70.3495 (2)0.21463 (8)0.08269 (15)0.0320 (4)
H7A0.4414010.2389230.0691190.038*
H7B0.3132980.2151390.1572920.038*
C80.3938 (2)0.15419 (7)0.05045 (15)0.0307 (4)
H8A0.3052010.1288820.0708960.037*
H8B0.4203450.1526490.0249210.037*
C90.5286 (2)0.13262 (8)0.09812 (16)0.0354 (5)
H9A0.4978980.130430.1731610.043*
H9B0.6131110.1603310.0840230.043*
C9A0.5859 (2)0.07477 (8)0.05863 (15)0.0310 (4)
H9AA0.6267420.0776440.0151590.037*
H9AB0.4996660.0476660.0667380.037*
C100.8515 (2)0.08126 (8)0.08112 (15)0.0299 (4)
H10A0.891980.070590.0097160.036*
H10B0.8367040.1229260.083610.036*
C110.9652 (2)0.06473 (7)0.14973 (15)0.0299 (4)
H11A0.9325160.0811070.2185090.036*
H11B1.0659330.0810840.1220280.036*
C130.8383 (2)0.02983 (8)0.16599 (16)0.0311 (4)
H13A0.8635760.0698870.148040.037*
H13B0.7851460.0289750.23750.037*
C120.7322 (2)0.00752 (7)0.09674 (15)0.0305 (4)
H12A0.6339250.0281240.1105310.037*
H12B0.7773870.0143270.0245720.037*
C271.0962 (2)0.01862 (7)0.20550 (14)0.0262 (4)
C281.2204 (2)0.01525 (8)0.22479 (15)0.0303 (4)
H281.2224370.0543980.2073910.036*
C291.3384 (2)0.00736 (8)0.26829 (15)0.0317 (4)
H291.4208480.0160950.2802030.038*
C301.3364 (2)0.06437 (8)0.29459 (15)0.0297 (4)
C311.2158 (2)0.09866 (8)0.27797 (15)0.0333 (5)
H311.2146260.1376110.2966750.04*
C321.0977 (2)0.07651 (8)0.23449 (15)0.0326 (4)
H321.0157010.1004790.22370.039*
N51.45954 (19)0.08869 (7)0.34018 (13)0.0352 (4)
N30.24674 (19)0.22548 (7)0.24519 (12)0.0320 (4)
N10.26660 (17)0.24137 (6)0.08259 (11)0.0249 (3)
N20.70529 (17)0.05309 (6)0.11303 (12)0.0282 (4)
N40.98048 (17)0.00288 (6)0.15902 (12)0.0269 (3)
O40.40858 (17)0.29298 (6)0.32722 (11)0.0410 (4)
O20.10659 (15)0.16980 (5)0.12005 (11)0.0375 (4)
O11.55536 (16)0.05671 (6)0.36781 (12)0.0433 (4)
O31.46347 (17)0.14080 (6)0.35078 (13)0.0496 (4)
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
C140.0330 (11)0.0246 (9)0.0288 (10)0.0022 (8)0.0018 (9)0.0040 (7)
C150.0382 (12)0.0298 (10)0.0391 (12)0.0006 (9)0.0017 (10)0.0024 (8)
C160.0606 (15)0.0320 (11)0.0389 (12)0.0128 (10)0.0028 (11)0.0011 (9)
C170.0842 (19)0.0262 (10)0.0428 (13)0.0008 (12)0.0193 (13)0.0043 (9)
C180.0687 (16)0.0344 (11)0.0420 (12)0.0147 (11)0.0216 (12)0.0009 (9)
C190.0456 (13)0.0316 (10)0.0306 (11)0.0083 (9)0.0100 (10)0.0064 (8)
C200.0337 (11)0.0396 (11)0.0340 (11)0.0096 (9)0.0072 (9)0.0099 (8)
C210.0394 (13)0.0554 (14)0.0501 (14)0.0199 (11)0.0165 (11)0.0125 (11)
C220.0268 (11)0.0731 (17)0.0550 (15)0.0095 (12)0.0119 (11)0.0186 (12)
C230.0262 (11)0.0611 (14)0.0451 (13)0.0022 (10)0.0006 (10)0.0139 (11)
C240.0245 (10)0.0431 (11)0.0383 (11)0.0004 (9)0.0025 (9)0.0084 (9)
C250.0243 (10)0.0342 (10)0.0313 (10)0.0037 (8)0.0011 (8)0.0075 (8)
C50.0239 (9)0.0257 (9)0.0310 (10)0.0011 (7)0.0007 (8)0.0029 (7)
C40.0286 (10)0.0303 (10)0.0319 (10)0.0082 (8)0.0005 (9)0.0029 (8)
C20.0215 (9)0.0265 (9)0.0370 (11)0.0058 (8)0.0059 (8)0.0000 (8)
C260.0473 (13)0.0533 (13)0.0418 (13)0.0052 (11)0.0207 (11)0.0102 (10)
C60.0253 (10)0.0280 (9)0.0306 (10)0.0023 (8)0.0032 (8)0.0029 (7)
C70.0345 (11)0.0320 (10)0.0293 (10)0.0019 (9)0.0041 (9)0.0014 (8)
C80.0281 (10)0.0289 (10)0.0354 (11)0.0003 (8)0.0061 (9)0.0057 (8)
C90.0360 (11)0.0361 (11)0.0358 (11)0.0043 (9)0.0105 (10)0.0005 (8)
C9A0.0283 (10)0.0336 (10)0.0325 (10)0.0004 (8)0.0093 (9)0.0012 (8)
C100.0319 (10)0.0262 (9)0.0320 (10)0.0009 (8)0.0068 (9)0.0001 (7)
C110.0288 (10)0.0246 (9)0.0371 (11)0.0006 (8)0.0080 (9)0.0017 (7)
C130.0257 (10)0.0256 (9)0.0421 (11)0.0014 (8)0.0061 (9)0.0005 (8)
C120.0258 (10)0.0285 (10)0.0378 (11)0.0019 (8)0.0071 (9)0.0039 (8)
C270.0238 (9)0.0277 (9)0.0261 (9)0.0019 (7)0.0011 (8)0.0022 (7)
C280.0312 (10)0.0247 (9)0.0350 (10)0.0034 (8)0.0052 (9)0.0013 (8)
C290.0273 (10)0.0324 (10)0.0358 (11)0.0049 (8)0.0063 (9)0.0006 (8)
C300.0243 (9)0.0327 (10)0.0315 (10)0.0013 (8)0.0028 (8)0.0017 (8)
C310.0324 (11)0.0253 (9)0.0422 (12)0.0006 (8)0.0058 (9)0.0031 (8)
C320.0268 (10)0.0282 (10)0.0432 (12)0.0033 (8)0.0065 (9)0.0005 (8)
N50.0285 (9)0.0352 (9)0.0420 (10)0.0000 (8)0.0056 (8)0.0060 (7)
N30.0302 (9)0.0344 (9)0.0330 (9)0.0025 (7)0.0095 (7)0.0027 (7)
N10.0217 (8)0.0232 (7)0.0291 (8)0.0016 (6)0.0022 (7)0.0025 (6)
N20.0256 (8)0.0268 (8)0.0330 (9)0.0020 (6)0.0069 (7)0.0002 (6)
N40.0256 (8)0.0224 (7)0.0329 (8)0.0004 (6)0.0048 (7)0.0018 (6)
O40.0446 (9)0.0410 (8)0.0342 (8)0.0083 (7)0.0039 (7)0.0066 (6)
O20.0267 (7)0.0301 (7)0.0560 (10)0.0053 (6)0.0069 (7)0.0011 (6)
O10.0326 (8)0.0435 (8)0.0568 (10)0.0093 (7)0.0164 (7)0.0086 (7)
O30.0399 (9)0.0353 (8)0.0770 (12)0.0010 (7)0.0192 (9)0.0101 (7)
Geometric parameters (Å, º) top
C14—C151.385 (3)C7—H7A0.99
C14—C191.394 (3)C7—H7B0.99
C14—C51.519 (2)C8—C91.526 (3)
C15—C161.393 (3)C8—H8A0.99
C15—H150.95C8—H8B0.99
C16—C171.379 (3)C9—C9A1.519 (3)
C16—H160.95C9—H9A0.99
C17—C181.396 (3)C9—H9B0.99
C17—H170.95C9A—N21.464 (2)
C18—C191.385 (3)C9A—H9AA0.99
C18—H180.95C9A—H9AB0.99
C19—C201.478 (3)C10—N21.460 (2)
C20—C211.394 (3)C10—C111.512 (2)
C20—C251.397 (3)C10—H10A0.99
C21—C221.385 (3)C10—H10B0.99
C21—H210.95C11—N41.470 (2)
C22—C231.380 (3)C11—H11A0.99
C22—H220.95C11—H11B0.99
C23—C241.385 (3)C13—N41.469 (2)
C23—H230.95C13—C121.510 (3)
C24—C251.382 (3)C13—H13A0.99
C24—H240.95C13—H13B0.99
C25—C51.524 (3)C12—N21.458 (2)
C5—N11.464 (2)C12—H12A0.99
C5—C41.541 (3)C12—H12B0.99
C4—O41.211 (2)C27—N41.375 (2)
C4—N31.356 (2)C27—C281.417 (2)
C2—O21.215 (2)C27—C321.417 (3)
C2—N11.350 (2)C28—C291.380 (3)
C2—N31.404 (2)C28—H280.95
C26—N31.460 (2)C29—C301.387 (3)
C26—H26A0.98C29—H290.95
C26—H26B0.98C30—C311.387 (3)
C26—H26C0.98C30—N51.448 (2)
C6—N11.463 (2)C31—C321.376 (3)
C6—C71.519 (3)C31—H310.95
C6—H6A0.99C32—H320.95
C6—H6B0.99N5—O11.234 (2)
C7—C81.520 (3)N5—O31.236 (2)
C15—C14—C19121.58 (18)H8A—C8—H8B107.9
C15—C14—C5128.09 (17)C9A—C9—C8113.49 (16)
C19—C14—C5110.26 (17)C9A—C9—H9A108.9
C14—C15—C16118.2 (2)C8—C9—H9A108.9
C14—C15—H15120.9C9A—C9—H9B108.9
C16—C15—H15120.9C8—C9—H9B108.9
C17—C16—C15120.5 (2)H9A—C9—H9B107.7
C17—C16—H16119.8N2—C9A—C9111.89 (15)
C15—C16—H16119.8N2—C9A—H9AA109.2
C16—C17—C18121.33 (19)C9—C9A—H9AA109.2
C16—C17—H17119.3N2—C9A—H9AB109.2
C18—C17—H17119.3C9—C9A—H9AB109.2
C19—C18—C17118.5 (2)H9AA—C9A—H9AB107.9
C19—C18—H18120.8N2—C10—C11110.86 (15)
C17—C18—H18120.8N2—C10—H10A109.5
C18—C19—C14119.9 (2)C11—C10—H10A109.5
C18—C19—C20131.3 (2)N2—C10—H10B109.5
C14—C19—C20108.74 (16)C11—C10—H10B109.5
C21—C20—C25119.1 (2)H10A—C10—H10B108.1
C21—C20—C19132.35 (19)N4—C11—C10112.64 (15)
C25—C20—C19108.54 (17)N4—C11—H11A109.1
C22—C21—C20118.6 (2)C10—C11—H11A109.1
C22—C21—H21120.7N4—C11—H11B109.1
C20—C21—H21120.7C10—C11—H11B109.1
C23—C22—C21122.1 (2)H11A—C11—H11B107.8
C23—C22—H22119N4—C13—C12113.06 (15)
C21—C22—H22119N4—C13—H13A109
C22—C23—C24119.6 (2)C12—C13—H13A109
C22—C23—H23120.2N4—C13—H13B109
C24—C23—H23120.2C12—C13—H13B109
C25—C24—C23118.9 (2)H13A—C13—H13B107.8
C25—C24—H24120.5N2—C12—C13110.75 (15)
C23—C24—H24120.5N2—C12—H12A109.5
C24—C25—C20121.63 (18)C13—C12—H12A109.5
C24—C25—C5128.24 (17)N2—C12—H12B109.5
C20—C25—C5110.13 (16)C13—C12—H12B109.5
N1—C5—C14115.38 (15)H12A—C12—H12B108.1
N1—C5—C25115.41 (14)N4—C27—C28122.09 (16)
C14—C5—C25102.30 (15)N4—C27—C32121.04 (16)
N1—C5—C4101.26 (14)C28—C27—C32116.86 (16)
C14—C5—C4112.18 (14)C29—C28—C27121.47 (17)
C25—C5—C4110.66 (16)C29—C28—H28119.3
O4—C4—N3127.08 (19)C27—C28—H28119.3
O4—C4—C5126.22 (18)C28—C29—C30119.88 (17)
N3—C4—C5106.70 (16)C28—C29—H29120.1
O2—C2—N1128.22 (18)C30—C29—H29120.1
O2—C2—N3124.26 (17)C29—C30—C31120.24 (17)
N1—C2—N3107.50 (16)C29—C30—N5120.50 (17)
N3—C26—H26A109.5C31—C30—N5119.26 (16)
N3—C26—H26B109.5C32—C31—C30120.28 (17)
H26A—C26—H26B109.5C32—C31—H31119.9
N3—C26—H26C109.5C30—C31—H31119.9
H26A—C26—H26C109.5C31—C32—C27121.26 (17)
H26B—C26—H26C109.5C31—C32—H32119.4
N1—C6—C7113.83 (15)C27—C32—H32119.4
N1—C6—H6A108.8O1—N5—O3122.61 (16)
C7—C6—H6A108.8O1—N5—C30118.90 (15)
N1—C6—H6B108.8O3—N5—C30118.48 (16)
C7—C6—H6B108.8C4—N3—C2112.28 (16)
H6A—C6—H6B107.7C4—N3—C26124.97 (18)
C6—C7—C8114.20 (16)C2—N3—C26122.74 (17)
C6—C7—H7A108.7C2—N1—C6122.35 (15)
C8—C7—H7A108.7C2—N1—C5112.24 (15)
C6—C7—H7B108.7C6—N1—C5125.01 (14)
C8—C7—H7B108.7C12—N2—C10106.54 (14)
H7A—C7—H7B107.6C12—N2—C9A112.52 (14)
C7—C8—C9112.38 (16)C10—N2—C9A112.24 (14)
C7—C8—H8A109.1C27—N4—C13118.29 (14)
C9—C8—H8A109.1C27—N4—C11119.20 (14)
C7—C8—H8B109.1C13—N4—C11115.80 (14)
C9—C8—H8B109.1
C19—C14—C15—C161.1 (3)N4—C13—C12—N252.5 (2)
C5—C14—C15—C16177.78 (18)N4—C27—C28—C29177.73 (17)
C14—C15—C16—C171.2 (3)C32—C27—C28—C291.0 (3)
C15—C16—C17—C180.7 (3)C27—C28—C29—C300.4 (3)
C16—C17—C18—C190.1 (3)C28—C29—C30—C310.4 (3)
C17—C18—C19—C140.2 (3)C28—C29—C30—N5179.93 (17)
C17—C18—C19—C20178.6 (2)C29—C30—C31—C320.5 (3)
C15—C14—C19—C180.4 (3)N5—C30—C31—C32179.82 (18)
C5—C14—C19—C18177.61 (18)C30—C31—C32—C270.2 (3)
C15—C14—C19—C20178.30 (18)N4—C27—C32—C31177.85 (18)
C5—C14—C19—C201.1 (2)C28—C27—C32—C310.9 (3)
C18—C19—C20—C212.7 (4)C29—C30—N5—O19.6 (3)
C14—C19—C20—C21178.7 (2)C31—C30—N5—O1170.04 (18)
C18—C19—C20—C25178.3 (2)C29—C30—N5—O3171.11 (19)
C14—C19—C20—C250.2 (2)C31—C30—N5—O39.2 (3)
C25—C20—C21—C221.7 (3)O4—C4—N3—C2179.91 (18)
C19—C20—C21—C22177.1 (2)C5—C4—N3—C20.2 (2)
C20—C21—C22—C232.1 (4)O4—C4—N3—C260.7 (3)
C21—C22—C23—C240.4 (4)C5—C4—N3—C26179.16 (17)
C22—C23—C24—C251.7 (3)O2—C2—N3—C4179.46 (17)
C23—C24—C25—C202.0 (3)N1—C2—N3—C40.7 (2)
C23—C24—C25—C5178.22 (19)O2—C2—N3—C261.2 (3)
C21—C20—C25—C240.3 (3)N1—C2—N3—C26179.94 (17)
C19—C20—C25—C24179.40 (18)O2—C2—N1—C67.0 (3)
C21—C20—C25—C5179.91 (18)N3—C2—N1—C6171.71 (15)
C19—C20—C25—C50.8 (2)O2—C2—N1—C5179.95 (17)
C15—C14—C5—N155.4 (3)N3—C2—N1—C51.34 (19)
C19—C14—C5—N1127.64 (17)C7—C6—N1—C2110.23 (19)
C15—C14—C5—C25178.47 (19)C7—C6—N1—C577.6 (2)
C19—C14—C5—C251.5 (2)C14—C5—N1—C2122.75 (17)
C15—C14—C5—C459.9 (3)C25—C5—N1—C2118.14 (17)
C19—C14—C5—C4117.10 (18)C4—C5—N1—C21.38 (18)
C24—C25—C5—N152.7 (3)C14—C5—N1—C650.1 (2)
C20—C25—C5—N1127.51 (17)C25—C5—N1—C669.0 (2)
C24—C25—C5—C14178.84 (19)C4—C5—N1—C6171.46 (15)
C20—C25—C5—C141.4 (2)C13—C12—N2—C1065.02 (19)
C24—C25—C5—C461.5 (2)C13—C12—N2—C9A171.57 (15)
C20—C25—C5—C4118.28 (17)C11—C10—N2—C1265.33 (19)
N1—C5—C4—O4179.19 (18)C11—C10—N2—C9A171.09 (15)
C14—C5—C4—O455.6 (3)C9—C9A—N2—C12164.30 (16)
C25—C5—C4—O457.9 (2)C9—C9A—N2—C1075.5 (2)
N1—C5—C4—N30.90 (18)C28—C27—N4—C13164.17 (17)
C14—C5—C4—N3124.48 (16)C32—C27—N4—C1317.2 (3)
C25—C5—C4—N3121.96 (16)C28—C27—N4—C1114.1 (3)
N1—C6—C7—C858.2 (2)C32—C27—N4—C11167.26 (17)
C6—C7—C8—C9174.09 (16)C12—C13—N4—C27169.61 (16)
C7—C8—C9—C9A173.93 (17)C12—C13—N4—C1139.3 (2)
C8—C9—C9A—N2174.51 (16)C10—C11—N4—C27169.86 (16)
N2—C10—C11—N452.7 (2)C10—C11—N4—C1339.3 (2)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
C6—H6A···O3i0.992.613.525 (2)154
C6—H6B···O4ii0.992.393.242 (2)144
C10—H10B···O4iii0.992.443.271 (2)141
C13—H13A···O2iv0.992.393.374 (2)172
C13—H13B···O1v0.992.543.427 (3)149
C26—H26A···O3vi0.982.653.300 (3)124
C32—H32···O2iv0.952.493.360 (2)152
Symmetry codes: (i) x+3/2, y+1/2, z1/2; (ii) x1/2, y+1/2, z1/2; (iii) x+1/2, y+1/2, z1/2; (iv) x+1, y, z; (v) x1, y, z; (vi) x+2, y, z.
1-Benzyl-4-[5-(3'-methyl-2',4'-dioxospiro[fluorene-9,5'-imidazolidin]-1'-yl)pentyl]piperazine-1,4-diium dichloride 0.613-hydrate (4) top
Crystal data top
C32H38N4O22+·2Cl·0.613H2OF(000) = 1257
Mr = 592.6Dx = 1.31 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54184 Å
Hall symbol: -P 2ybcCell parameters from 10750 reflections
a = 11.8717 (1) Åθ = 3.8–76.2°
b = 33.6944 (3) ŵ = 2.25 mm1
c = 7.6888 (1) ÅT = 100 K
β = 102.259 (1)°Needle, colourless
V = 3005.46 (5) Å30.37 × 0.07 × 0.02 mm
Z = 4
Data collection top
XtaLAB Synergy Dualflex HyPix
diffractometer
6065 independent reflections
Radiation source: micro-focus sealed X-ray tube, PhotonJet (Cu) X-ray Source5306 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.036
ω scansθmax = 76.5°, θmin = 2.6°
Absorption correction: gaussian
(CrysAlis PRO; Rigaku OD, 2018)
h = 1414
Tmin = 0.377, Tmax = 1k = 4231
20267 measured reflectionsl = 99
Refinement top
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.034H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.087 w = 1/[σ2(Fo2) + (0.0413P)2 + 1.1028P]
where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max = 0.004
6065 reflectionsΔρmax = 0.28 e Å3
380 parametersΔρmin = 0.45 e Å3
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/UeqOcc. (<1)
C330.32892 (14)1.16097 (5)0.2875 (2)0.0271 (3)
H330.3508781.1424840.207470.033*
C320.38903 (15)1.19638 (5)0.3254 (2)0.0298 (3)
H320.4528331.2019180.2727370.036*
C310.35592 (15)1.22364 (5)0.4400 (2)0.0289 (3)
H310.3976611.2477070.4668350.035*
C300.26230 (15)1.21591 (5)0.5156 (2)0.0283 (3)
H300.2389211.2348740.5922910.034*
C290.20249 (13)1.18035 (4)0.4791 (2)0.0250 (3)
H290.1382861.1750230.5311390.03*
C280.23640 (13)1.15256 (4)0.36670 (19)0.0222 (3)
C270.17423 (13)1.11341 (4)0.3343 (2)0.0229 (3)
H27A0.1857391.1019960.2206870.027*
H27B0.0905751.1177620.3236970.027*
N40.21764 (10)1.08445 (3)0.48393 (16)0.0184 (2)
C110.14856 (12)1.04698 (4)0.45654 (19)0.0197 (3)
H11A0.1555951.034650.3424580.024*
H11B0.0662531.053280.4494420.024*
C100.18924 (12)1.01792 (4)0.6069 (2)0.0205 (3)
H10A0.1785051.0296750.7202570.025*
H10B0.1423880.9934050.5850910.025*
N20.31387 (10)1.00784 (3)0.62160 (16)0.0188 (2)
C120.38353 (13)1.04543 (4)0.6483 (2)0.0219 (3)
H12A0.4655161.0390310.6530920.026*
H12B0.3780241.0574980.7636380.026*
C130.34240 (12)1.07503 (4)0.5006 (2)0.0206 (3)
H13A0.388221.0997170.5255310.025*
H13B0.3545771.0639970.3867030.025*
C9A0.35951 (14)0.98015 (4)0.77499 (19)0.0244 (3)
H9AA0.3429720.9918160.8850760.029*
H9AB0.4443020.9783660.7905730.029*
C90.30963 (14)0.93838 (4)0.75303 (19)0.0225 (3)
H9A0.2254330.9402590.7061530.027*
H9B0.3218740.9256720.8716560.027*
C80.36150 (13)0.91179 (4)0.62934 (19)0.0218 (3)
H8A0.4463780.9114650.6704730.026*
H8B0.3436510.9232090.5079490.026*
C70.31662 (13)0.86917 (4)0.62149 (19)0.0226 (3)
H7A0.3619550.8527610.5543170.027*
H7B0.3294410.8585010.7440920.027*
C60.18887 (13)0.86515 (4)0.53464 (18)0.0199 (3)
H6A0.1663620.8369110.5379980.024*
H6B0.1432130.8804410.6053460.024*
N10.15991 (10)0.87894 (3)0.35088 (14)0.0163 (2)
C20.10642 (11)0.91367 (4)0.30108 (18)0.0166 (3)
N30.08313 (10)0.91519 (3)0.11459 (15)0.0177 (2)
C40.11035 (11)0.88067 (4)0.04195 (18)0.0166 (3)
C50.17287 (12)0.85478 (4)0.19769 (17)0.0159 (3)
O20.08047 (9)0.93980 (3)0.39552 (13)0.0213 (2)
C260.02922 (13)0.94931 (4)0.0161 (2)0.0239 (3)
H26A0.0532290.9494920.0168050.036*
H26B0.0393940.9478450.1069030.036*
H26C0.0650350.9736590.0718780.036*
O40.09308 (9)0.87246 (3)0.11499 (13)0.0219 (2)
C250.12762 (12)0.81250 (4)0.20123 (17)0.0170 (3)
C240.01922 (13)0.80023 (4)0.21727 (19)0.0213 (3)
H240.0408780.8188380.2174360.026*
C230.00094 (14)0.75961 (4)0.2332 (2)0.0250 (3)
H230.0726070.7504380.2456660.03*
C220.08858 (14)0.73230 (4)0.2312 (2)0.0246 (3)
H220.0745930.7048240.2446120.029*
C210.19640 (13)0.74482 (4)0.2099 (2)0.0229 (3)
H210.2557120.7261380.2057690.027*
C200.21564 (12)0.78529 (4)0.19469 (18)0.0183 (3)
C190.31943 (12)0.80720 (4)0.17535 (18)0.0184 (3)
C180.42659 (13)0.79417 (4)0.1537 (2)0.0255 (3)
H180.4427530.7666060.150060.031*
C170.50998 (13)0.82220 (5)0.1374 (2)0.0261 (3)
H170.583420.8135730.122010.031*
C160.48735 (13)0.86259 (4)0.14337 (19)0.0214 (3)
H160.5451690.881260.1313370.026*
C150.38025 (12)0.87591 (4)0.16691 (18)0.0180 (3)
H150.3646880.9034720.1730540.022*
C140.29741 (12)0.84796 (4)0.18104 (17)0.0160 (3)
O1W0.37714 (16)1.06536 (5)0.0761 (2)0.0266 (6)0.613 (4)
H1B0.3165061.0787780.0098160.04*0.613 (4)
H1A0.3518911.0416250.0945760.04*0.613 (4)
Cl10.32050 (3)0.98513 (2)0.23450 (4)0.02132 (9)
Cl20.18713 (3)1.11279 (2)0.84368 (5)0.02660 (10)
H4N0.2053 (16)1.0972 (5)0.596 (3)0.026 (4)*
H2N0.3219 (16)0.9961 (5)0.512 (3)0.027 (4)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
C330.0317 (8)0.0231 (7)0.0286 (8)0.0003 (6)0.0107 (6)0.0004 (6)
C320.0311 (8)0.0257 (8)0.0345 (8)0.0037 (6)0.0116 (7)0.0040 (6)
C310.0345 (9)0.0193 (7)0.0320 (8)0.0042 (6)0.0052 (7)0.0031 (6)
C300.0340 (9)0.0202 (7)0.0305 (8)0.0033 (6)0.0061 (7)0.0014 (6)
C290.0234 (7)0.0224 (7)0.0296 (8)0.0025 (6)0.0062 (6)0.0027 (6)
C280.0222 (7)0.0196 (7)0.0230 (7)0.0014 (5)0.0006 (6)0.0038 (5)
C270.0223 (7)0.0215 (7)0.0235 (7)0.0001 (6)0.0018 (6)0.0016 (6)
N40.0170 (6)0.0158 (5)0.0224 (6)0.0011 (4)0.0040 (5)0.0020 (5)
C110.0162 (6)0.0170 (6)0.0259 (7)0.0020 (5)0.0042 (5)0.0047 (5)
C100.0202 (7)0.0175 (6)0.0250 (7)0.0033 (5)0.0073 (6)0.0036 (5)
N20.0208 (6)0.0152 (5)0.0199 (6)0.0013 (4)0.0029 (5)0.0009 (4)
C120.0199 (7)0.0170 (7)0.0269 (7)0.0041 (5)0.0008 (6)0.0013 (5)
C130.0164 (7)0.0181 (7)0.0271 (7)0.0019 (5)0.0045 (5)0.0000 (5)
C9A0.0325 (8)0.0195 (7)0.0186 (7)0.0021 (6)0.0005 (6)0.0007 (5)
C90.0316 (8)0.0170 (7)0.0185 (7)0.0015 (6)0.0043 (6)0.0015 (5)
C80.0224 (7)0.0212 (7)0.0210 (7)0.0000 (5)0.0025 (6)0.0001 (5)
C70.0307 (8)0.0176 (7)0.0178 (7)0.0043 (6)0.0016 (6)0.0012 (5)
C60.0306 (8)0.0146 (6)0.0152 (6)0.0022 (5)0.0065 (6)0.0004 (5)
N10.0222 (6)0.0128 (5)0.0141 (5)0.0018 (4)0.0045 (4)0.0008 (4)
C20.0151 (6)0.0144 (6)0.0206 (6)0.0015 (5)0.0044 (5)0.0010 (5)
N30.0191 (6)0.0142 (5)0.0188 (6)0.0022 (4)0.0017 (4)0.0016 (4)
C40.0150 (6)0.0163 (6)0.0186 (6)0.0006 (5)0.0042 (5)0.0014 (5)
C50.0196 (6)0.0130 (6)0.0150 (6)0.0007 (5)0.0034 (5)0.0007 (5)
O20.0221 (5)0.0168 (5)0.0256 (5)0.0020 (4)0.0061 (4)0.0060 (4)
C260.0254 (7)0.0164 (6)0.0270 (7)0.0050 (6)0.0008 (6)0.0038 (6)
O40.0240 (5)0.0250 (5)0.0161 (5)0.0026 (4)0.0029 (4)0.0002 (4)
C250.0218 (7)0.0134 (6)0.0158 (6)0.0008 (5)0.0043 (5)0.0013 (5)
C240.0222 (7)0.0199 (7)0.0227 (7)0.0003 (5)0.0067 (6)0.0036 (5)
C230.0266 (8)0.0237 (7)0.0266 (8)0.0082 (6)0.0097 (6)0.0054 (6)
C220.0338 (8)0.0151 (6)0.0257 (8)0.0060 (6)0.0084 (6)0.0032 (5)
C210.0287 (8)0.0138 (6)0.0263 (7)0.0007 (5)0.0062 (6)0.0013 (5)
C200.0212 (7)0.0149 (6)0.0186 (6)0.0004 (5)0.0036 (5)0.0004 (5)
C190.0207 (7)0.0151 (6)0.0190 (6)0.0008 (5)0.0032 (5)0.0002 (5)
C180.0230 (7)0.0159 (7)0.0378 (9)0.0046 (5)0.0072 (6)0.0009 (6)
C170.0185 (7)0.0251 (7)0.0352 (8)0.0027 (6)0.0070 (6)0.0034 (6)
C160.0202 (7)0.0215 (7)0.0223 (7)0.0041 (5)0.0042 (5)0.0021 (5)
C150.0231 (7)0.0148 (6)0.0158 (6)0.0005 (5)0.0032 (5)0.0009 (5)
C140.0185 (6)0.0145 (6)0.0146 (6)0.0014 (5)0.0024 (5)0.0002 (5)
O1W0.0281 (10)0.0238 (10)0.0265 (10)0.0019 (7)0.0028 (7)0.0029 (7)
Cl10.02535 (17)0.01952 (16)0.01900 (16)0.00307 (12)0.00451 (13)0.00233 (12)
Cl20.0322 (2)0.02407 (18)0.02554 (18)0.00226 (14)0.01062 (14)0.00571 (13)
Geometric parameters (Å, º) top
C33—C321.389 (2)C7—H7A0.99
C33—C281.394 (2)C7—H7B0.99
C33—H330.95C6—N11.4575 (17)
C32—C311.387 (2)C6—H6A0.99
C32—H320.95C6—H6B0.99
C31—C301.384 (2)N1—C21.3474 (17)
C31—H310.95N1—C51.4664 (16)
C30—C291.391 (2)C2—O21.2218 (17)
C30—H300.95C2—N31.4025 (18)
C29—C281.391 (2)N3—C41.3587 (17)
C29—H290.95N3—C261.4484 (17)
C28—C271.506 (2)C4—O41.2123 (17)
C27—N41.5132 (18)C4—C51.5389 (18)
C27—H27A0.99C5—C251.5249 (18)
C27—H27B0.99C5—C141.5283 (19)
N4—C131.4934 (18)C26—H26A0.98
N4—C111.4960 (17)C26—H26B0.98
N4—H4N1.004 (19)C26—H26C0.98
C11—C101.514 (2)C25—C241.382 (2)
C11—H11A0.99C25—C201.3990 (19)
C11—H11B0.99C24—C231.395 (2)
C10—N21.4988 (18)C24—H240.95
C10—H10A0.99C23—C221.391 (2)
C10—H10B0.99C23—H230.95
N2—C121.5029 (17)C22—C211.390 (2)
N2—C9A1.5111 (18)C22—H220.95
N2—H2N0.95 (2)C21—C201.3915 (19)
C12—C131.512 (2)C21—H210.95
C12—H12A0.99C20—C191.4707 (19)
C12—H12B0.99C19—C181.389 (2)
C13—H13A0.99C19—C141.4007 (19)
C13—H13B0.99C18—C171.393 (2)
C9A—C91.5223 (19)C18—H180.95
C9A—H9AA0.99C17—C161.390 (2)
C9A—H9AB0.99C17—H170.95
C9—C81.528 (2)C16—C151.396 (2)
C9—H9A0.99C16—H160.95
C9—H9B0.99C15—C141.3824 (19)
C8—C71.528 (2)C15—H150.95
C8—H8A0.99O1W—H1B0.909
C8—H8B0.99O1W—H1A0.8762
C7—C61.528 (2)
C32—C33—C28120.04 (15)C7—C8—H8B109
C32—C33—H33120H8A—C8—H8B107.8
C28—C33—H33120C6—C7—C8113.95 (12)
C31—C32—C33119.99 (15)C6—C7—H7A108.8
C31—C32—H32120C8—C7—H7A108.8
C33—C32—H32120C6—C7—H7B108.8
C30—C31—C32120.25 (15)C8—C7—H7B108.8
C30—C31—H31119.9H7A—C7—H7B107.7
C32—C31—H31119.9N1—C6—C7113.79 (12)
C31—C30—C29119.91 (15)N1—C6—H6A108.8
C31—C30—H30120C7—C6—H6A108.8
C29—C30—H30120N1—C6—H6B108.8
C28—C29—C30120.18 (15)C7—C6—H6B108.8
C28—C29—H29119.9H6A—C6—H6B107.7
C30—C29—H29119.9C2—N1—C6123.53 (11)
C29—C28—C33119.60 (14)C2—N1—C5112.16 (11)
C29—C28—C27119.74 (14)C6—N1—C5123.93 (11)
C33—C28—C27120.65 (14)O2—C2—N1128.33 (13)
C28—C27—N4111.29 (12)O2—C2—N3124.15 (12)
C28—C27—H27A109.4N1—C2—N3107.52 (11)
N4—C27—H27A109.4C4—N3—C2112.11 (11)
C28—C27—H27B109.4C4—N3—C26125.58 (12)
N4—C27—H27B109.4C2—N3—C26122.20 (12)
H27A—C27—H27B108O4—C4—N3126.86 (12)
C13—N4—C11109.68 (10)O4—C4—C5126.64 (12)
C13—N4—C27111.95 (11)N3—C4—C5106.43 (11)
C11—N4—C27110.44 (11)N1—C5—C25114.01 (11)
C13—N4—H4N109.9 (11)N1—C5—C14114.78 (11)
C11—N4—H4N107.8 (11)C25—C5—C14102.22 (10)
C27—N4—H4N106.9 (10)N1—C5—C4101.24 (10)
N4—C11—C10111.22 (11)C25—C5—C4115.47 (11)
N4—C11—H11A109.4C14—C5—C4109.60 (11)
C10—C11—H11A109.4N3—C26—H26A109.5
N4—C11—H11B109.4N3—C26—H26B109.5
C10—C11—H11B109.4H26A—C26—H26B109.5
H11A—C11—H11B108N3—C26—H26C109.5
N2—C10—C11110.74 (11)H26A—C26—H26C109.5
N2—C10—H10A109.5H26B—C26—H26C109.5
C11—C10—H10A109.5C24—C25—C20121.60 (12)
N2—C10—H10B109.5C24—C25—C5128.27 (12)
C11—C10—H10B109.5C20—C25—C5110.07 (12)
H10A—C10—H10B108.1C25—C24—C23117.80 (13)
C10—N2—C12108.97 (11)C25—C24—H24121.1
C10—N2—C9A112.55 (11)C23—C24—H24121.1
C12—N2—C9A108.54 (11)C22—C23—C24121.14 (14)
C10—N2—H2N108.1 (12)C22—C23—H23119.4
C12—N2—H2N108.4 (11)C24—C23—H23119.4
C9A—N2—H2N110.3 (11)C21—C22—C23120.66 (13)
N2—C12—C13111.88 (11)C21—C22—H22119.7
N2—C12—H12A109.2C23—C22—H22119.7
C13—C12—H12A109.2C22—C21—C20118.61 (14)
N2—C12—H12B109.2C22—C21—H21120.7
C13—C12—H12B109.2C20—C21—H21120.7
H12A—C12—H12B107.9C21—C20—C25120.13 (13)
N4—C13—C12111.15 (11)C21—C20—C19131.02 (13)
N4—C13—H13A109.4C25—C20—C19108.83 (12)
C12—C13—H13A109.4C18—C19—C14119.70 (13)
N4—C13—H13B109.4C18—C19—C20131.45 (13)
C12—C13—H13B109.4C14—C19—C20108.85 (12)
H13A—C13—H13B108C19—C18—C17118.89 (13)
N2—C9A—C9114.69 (12)C19—C18—H18120.6
N2—C9A—H9AA108.6C17—C18—H18120.6
C9—C9A—H9AA108.6C16—C17—C18120.99 (14)
N2—C9A—H9AB108.6C16—C17—H17119.5
C9—C9A—H9AB108.6C18—C17—H17119.5
H9AA—C9A—H9AB107.6C17—C16—C15120.46 (13)
C9A—C9—C8114.36 (13)C17—C16—H16119.8
C9A—C9—H9A108.7C15—C16—H16119.8
C8—C9—H9A108.7C14—C15—C16118.29 (13)
C9A—C9—H9B108.7C14—C15—H15120.9
C8—C9—H9B108.7C16—C15—H15120.9
H9A—C9—H9B107.6C15—C14—C19121.67 (13)
C9—C8—C7113.10 (12)C15—C14—C5128.40 (12)
C9—C8—H8A109C19—C14—C5109.90 (11)
C7—C8—H8A109H1B—O1W—H1A106.7
C9—C8—H8B109
C28—C33—C32—C311.0 (2)C2—N1—C5—C42.98 (14)
C33—C32—C31—C300.7 (3)C6—N1—C5—C4170.18 (12)
C32—C31—C30—C291.2 (2)O4—C4—C5—N1176.45 (13)
C31—C30—C29—C280.1 (2)N3—C4—C5—N16.26 (13)
C30—C29—C28—C331.5 (2)O4—C4—C5—C2552.81 (19)
C30—C29—C28—C27177.39 (14)N3—C4—C5—C25129.90 (12)
C32—C33—C28—C292.1 (2)O4—C4—C5—C1461.93 (17)
C32—C33—C28—C27176.85 (14)N3—C4—C5—C14115.36 (12)
C29—C28—C27—N481.34 (16)N1—C5—C25—C2454.53 (19)
C33—C28—C27—N497.58 (16)C14—C5—C25—C24179.00 (14)
C28—C27—N4—C1361.98 (15)C4—C5—C25—C2462.10 (18)
C28—C27—N4—C11175.49 (12)N1—C5—C25—C20122.38 (12)
C13—N4—C11—C1057.25 (15)C14—C5—C25—C202.08 (14)
C27—N4—C11—C10178.90 (11)C4—C5—C25—C20120.98 (13)
N4—C11—C10—N258.89 (15)C20—C25—C24—C232.2 (2)
C11—C10—N2—C1257.22 (14)C5—C25—C24—C23174.37 (13)
C11—C10—N2—C9A177.67 (11)C25—C24—C23—C220.6 (2)
C10—N2—C12—C1356.58 (15)C24—C23—C22—C211.2 (2)
C9A—N2—C12—C13179.46 (12)C23—C22—C21—C201.5 (2)
C11—N4—C13—C1255.89 (15)C22—C21—C20—C250.1 (2)
C27—N4—C13—C12178.85 (11)C22—C21—C20—C19178.44 (14)
N2—C12—C13—N456.79 (16)C24—C25—C20—C212.0 (2)
C10—N2—C9A—C968.07 (16)C5—C25—C20—C21175.18 (12)
C12—N2—C9A—C9171.24 (12)C24—C25—C20—C19179.33 (13)
N2—C9A—C9—C878.08 (17)C5—C25—C20—C193.51 (15)
C9A—C9—C8—C7175.47 (12)C21—C20—C19—C185.3 (3)
C9—C8—C7—C666.96 (16)C25—C20—C19—C18176.22 (15)
C8—C7—C6—N160.12 (16)C21—C20—C19—C14174.88 (15)
C7—C6—N1—C2104.31 (15)C25—C20—C19—C143.61 (16)
C7—C6—N1—C583.30 (15)C14—C19—C18—C170.2 (2)
C6—N1—C2—O25.1 (2)C20—C19—C18—C17179.58 (15)
C5—N1—C2—O2178.26 (13)C19—C18—C17—C160.3 (2)
C6—N1—C2—N3174.50 (12)C18—C17—C16—C150.4 (2)
C5—N1—C2—N31.31 (15)C17—C16—C15—C141.0 (2)
O2—C2—N3—C4173.71 (13)C16—C15—C14—C191.1 (2)
N1—C2—N3—C45.88 (15)C16—C15—C14—C5176.60 (13)
O2—C2—N3—C262.5 (2)C18—C19—C14—C150.5 (2)
N1—C2—N3—C26177.87 (12)C20—C19—C14—C15179.67 (12)
C2—N3—C4—O4175.06 (13)C18—C19—C14—C5177.62 (13)
C26—N3—C4—O41.0 (2)C20—C19—C14—C52.24 (15)
C2—N3—C4—C57.66 (15)N1—C5—C14—C1557.95 (18)
C26—N3—C4—C5176.25 (13)C25—C5—C14—C15178.10 (13)
C2—N1—C5—C25127.62 (12)C4—C5—C14—C1555.14 (17)
C6—N1—C5—C2545.54 (17)N1—C5—C14—C19124.12 (12)
C2—N1—C5—C14114.94 (13)C25—C5—C14—C190.17 (14)
C6—N1—C5—C1471.90 (16)C4—C5—C14—C19122.79 (12)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N4—H4N···Cl21.00 (2)2.03 (2)3.020 (1)169 (2)
N2—H2N···Cl10.95 (2)2.16 (2)3.090 (1)164 (2)
C6—H6B···O4i0.992.373.148 (2)136
C9—H9A···O20.992.633.433 (2)138
C9A—H9AA···Cl1i0.992.763.663 (2)151
C9A—H9AB···O1Wii0.992.613.452 (2)143
C10—H10A···Cl20.992.953.681 (1)131
C10—H10B···O20.992.343.216 (2)147
C11—H11A···Cl10.992.833.592 (1)135
C11—H11B···O2iii0.992.323.194 (2)146
C12—H12A···Cl1ii0.992.633.588 (2)162
C12—H12B···O1Wi0.992.423.373 (2)162
C13—H13B···O1W0.992.463.392 (2)157
C13—H13B···Cl10.992.93.634 (2)132
C26—H26A···Cl2iii0.982.973.649 (2)128
C27—H27A···Cl2iv0.992.933.808 (2)149
C27—H27B···O4v0.992.443.297 (2)145
O1W—H1B···Cl2iv0.912.113.020 (2)174
O1W—H1A···Cl10.882.263.097 (2)161
Symmetry codes: (i) x, y, z+1; (ii) x+1, y+2, z+1; (iii) x, y+2, z+1; (iv) x, y, z1; (v) x, y+2, z.
The comparison of selected bond angles (°) and a bond length (Å) top
1234
C11—N4—C13110.9 (1)114.7 (1)115.8 (1)109.7 (1)
C11—N4—C27110.2 (1)117.6 (1)119.2 (1)110.4 (1)
C13—N4—C27113.5 (1)118.2 (1)118.3 (1)112.0 (1)
N4—C271.480 (2)1.377 (2)1.374 (2)1.513 (2)
Comparison of the efflux modulating effect of compounds 16 (at concentrations of 0.8 and 8 µM) and selected distances (Å) observed in the crystal structures top
FAR*AR1···PIAR2···PIAR1···AR2HYD···PIHYD···AR2
Model7.04 ± 25.99 ± 211.90 ± 26.82 ± 212.97 ± 2
0.8 µM8 µM
11.0642.485.99/7.835.6010.40/13.196.1911.34
21.3562.355.17/7.485.639.12/12.555.7610.61
354.7167.796.17/9.405.6210.52/14.227.4712.33
41.3644.517.02/8.686.3012.16/14.217.0712.47
5A**0.8436.715.53/4.586.3910.06/8.674.599.54
5B**0.8436.715.56/4.716.3310.13/9.074.699.76
67.06109.485.72/8.995.729.72/13.757.0911.68
Notes: (*) FAR is fluorescence activity ratio and represents the accumulation of rhodamine in the tested sensitive and resistant cells Żesławska et al., 2021). FAR of verapamil at 20 µM was 6.28 in this assay. (**) Compound 5 crystallizes with two molecules (A and B) in the asymmetric unit.
Comparison of the induced-fit docking results for pose I of derivatives with a three-carbon linker for the neutral form top
XP GScoreIFD ScoreHydrogen-bondππOther interactions of the ligand within 4 Å
1-10.143-2652.71O4···H—O Tyr307 O4···H—C Tyr307 Spiro H···OC Ile306 C26—H26C···O Gln725 C26—H26B···O Gln725Spiro···Tyr307TM1: Phe72 TM5: Phe303, Ile306, Tyr307, Tyr310 TM6: Phe336, Phe343 TM7: Gln725, Phe728, Phe732, Ile736 TM8: Phe759 TM12: Leu975, Phe978, Ser979, Phe983, Met986
2-9.357-2650.58O1···H—C Tyr953 O3···H—C Phe72 N2···H—C Phe983 Spiro H···OC Ile 306Spiro···Tyr307 Ph···Phe72TM1: Met68, Met69, Phe72 TM4: Leu225 TM5: Ile306, Tyr307, Tyr310 TM6: Phe336, Phe343 TM7: Phe728, Phe732 TM8: Phe759 TM11: Tyr953 TM12: Phe978, Ser979, Val982, Phe983, Met986
Comparison of the induced-fit docking results for pose I of derivatives with a five-carbon linker for the neutal form top
XP GScoreIFD ScoreHydrogen-bondππOther interactions of the ligand within 4 Å
3-10.757-2652.54O2···H—N Gln725 O4···H—C Tyr307 O4···H—C Ile306 O3···H—C Met68 O1···H—C Met68 O1···H—C Leu65Spiro···Tyr307, Tyr310TM1: Leu65, Met68, Met69 TM4: Leu225 TM5: Phe303, Ile306, Tyr307, Tyr310 TM6: Phe336, Ile340, Phe343 TM7: Gln725, Phe728 TM8: Phe759, Leu762 TM11: Tyr950, Tyr953 TM12: Phe978, Val982, Phe983, Met986
4-11.298-2653.62O2···H—N Gln725 O4···H—C Ile306 Spiro H···OC Ile306 N2···H—C Phe983Spiro···Tyr307, Tyr310 Ph···Ph72TM1: Leu65, Met68, Met69, Phe72 TM4: Leu225 TM5: Phe303, Ile306, Tyr307, Tyr310 TM6: Phe336, Leu339, Ile340, Phe343 TM7: Gln725, Phe728 TM8: Phe759, Leu762 TM11: Tyr953
Comparison of the induced-fit docking results for pose II of spirofluorene hydantoins 2 and 3 (neutral form) top
XP GScoreIFD ScoreHydrogen-bondππOther interactions of the ligand within 4 Å
2-9.719-2649.83O1···HO Ser222 O3···HO Ser222 O4···HO Tyr307 C12—H12···O Tyr310 C26—H26C···O Gln725 C26—H26A···O Gln725Spiro···Phe983TM4: Ser222, Leu225 TM5: Phe303, Ile306, Tyr307, Tyr310 TM6: Leu339, Ala342, Phe343 TM7: Gln725, Phe728, Phe732 TM8: Phe759 TM12: Phe983, Met986
3-10.3795-2651.88O1···H—O Ser222 O4···H—N Gln725 O4···H—C Phe983 C7—H7B···O Tyr310 C26—H26A···O Tyr307Spiro···Tyr307, Phe983TM4: Ser222, Leu225, Gly226, Ala229 TM5: Phe303, Ile306, Tyr307, Tyr310 TM6: Ala342, Phe343, Val345, Gly346 TM7: Gln725, Phe728, Phe732 TM8: Phe759 TM12: Phe983
Comparison of the induced-fit docking results for pose I of the protonated forms (observed in the cases of 1, 3 and 4) top
XP GScoreIFD ScoreHydrogen-bondππOther interactions of the ligand within 4 Å
1 (N2H+)-8.339-2651.64O4···H—O Tyr307 O4···H—C Tyr307Spiro···Tyr307TM1: Leu65, Met69 TM5: Phe303, Ile306, Tyr307, Tyr310 TM6: Phe336, Leu339, Ile340, Phe343 TM7: Gln725, Phe728 TM8: Phe759 TM9: Asn842 TM11: Tyr953 TM12: Phe978, Phe983, Met986
3 (N2H+)-10.172-2652.12O1···H—C Met68 O2···H—N Gln725 O3···H—C Leu65 O4···H—C Tyr307 C26—H26C···OC Gln725Spiro···Tyr307, Tyr310TM1: Leu65, Met68, Met69, Phe72 TM4: Leu225 TM5: Phe303, Ile306, Tyr307, Tyr310 TM6: Phe336, Leu339, Phe343 TM7: Gln725, Phe728 TM8: Phe759, Leu762 TM11: Tyr953 TM12: Phe983, Met986
4 (N2H+)-9.175-2654.38C26—H26C···OC Gln725Spiro···Tyr307, Phe728 Ph···Phe72TM1: Met69, Phe72 TM4: Leu225 TM5: Ile306, Tyr307, Tyr310 TM6: Phe336, Ile340, Phe343 TM7: Gln725, Phe728, Phe732 TM8: Phe759, Leu762 TM11: Tyr953 TM12: Leu975, Phe978, Ser979, Val982, Phe983, Met986
4 (N4H+)-9.125-2655.74O2···H—C Phe983 O4···H—C Tyr307 O4···H—C Ile306Spiro···Tyr307, Tyr310TM1: Leu65, Met68, Met69 TM4: Leu225 TM5: Phe303, Ile306, Tyr307, Tyr310 TM6: Phe336, Phe343 TM7: Phe728, Phe732 TM8: Phe759, Leu762 TM11: Met949, Tyr953 TM12: Phe978, Ser979, Val982, Phe983, Met986
Induced-fit docking results for pose IIIa of protonated forms (observed only in the cases of 2 and 3) top
XP GScoreIFD ScoreHydrogen-bondπ···cationππOther interactions of the ligand within 4 Å
2 (N2H+)-6.188-2649.79O3···H—C Ile306N2H+···Phe336Spiro···Phe978TM1: Leu65, Met68, Met69, Phe72 TM5: Ile306, Tyr310 TM6: Phe336, Leu339, Ile340, Phe343 TM7: Phe728 TM11: Met949, Tyr953 TM12: Phe978, Ser979, Val982, Phe983, Met986
3 (N2H+)-11.290-2653.90O2···H—C Met986 O3···H—C Phe728 O4···H—C Phe978-Spiro···Tyr950 Ph···Phe336, Phe335TM1: Leu65, Met68, Met69 TM5: Tyr310 TM6: Phe335, Phe336, Leu339, Ile340, Phe343 TM7: Phe728, Phe732 TM8: Phe759 TM10: Ile868 TM11: Met949, Tyr950, Tyr953 TM12: Phe978, Val982, Met986
Induced-fit docking results for pose IIIb of protonated forms (observed only in the case of 4) top
XP GScoreIFD ScoreHydrogen-bondππOther interactions of the ligand within 4 Å
4 (N2H+)-9.824-2654.49O2···H—C Met986 O4···H—C Phe978 C29H29···OC Gln347Spiro···Phe978, Tyr950TM1: Gly62, Leu65, Met68, Met69, Phe72 TM3: Met192, Gln195, Ser196, Thr199 TM6: Ile340, Ser344, Gln347 TM11: Phe942, Gln946, Met949, Tyr950, Tyr953 TM12: Phe978, Val982, Met986
4 (N4H+)-11.332-2658.64N2···H—N Gln946 O2···H—C Met986 O4···H—C Phe978 O4···H—C Tyr953 C30—H30···OC Met192Spiro···Phe978, Tyr950TM1: His61, Leu65, Met68, Met69, Phe72 TM3: Met192, Gln195, Ser196 TM6: Ile340, Gln347, Ala348 TM10: Ile868 TM11: Phe942, Gln946, Met949, Tyr950, Ser952, Tyr953 TM12: Phe978, Val982, Met986
Induced-fit docking results for pose IIIc of protonated forms (observed only in the case of 2) top
XP GScoreIFD ScoreHydrogen-bondππOther interactions of the ligand within 4 Å
2 (N2H+)-7.015-2651.43N2H+···O Ser952 O3···H—C Ala985 C21—H21···O Tyr953Spiro···Phe978TM1: Leu65, Met68, Met69, Phe72 TM6: Phe336 TM10: Val865, Ile868, Ala869 TM11: Met949, Tyr950, Ser952, Tyr953 TM12: Phe978, Val982, Phe983, Ala985, Met986 Gly989
 

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