The molecule of the title compound, C
21H
28N
4O
2S, contains three rings, namely cyclobutane, pyrrolidine and benzene. In the wedge-shaped cyclobutane ring, the maximum deviation from planarity is 0.151 (3) Å. The molecules are linked by N—H
S and N—H
O intermolecular hydrogen bonds.
Supporting information
CCDC reference: 227908
Key indicators
- Single-crystal X-ray study
- T = 293 K
- Mean (C-C) = 0.005 Å
- R factor = 0.043
- wR factor = 0.110
- Data-to-parameter ratio = 14.6
checkCIF/PLATON results
No syntax errors found
Alert level C
PLAT031_ALERT_4_C Refined Extinction Parameter within Range ...... 2.91 Sigma
PLAT241_ALERT_2_C Check High U(eq) as Compared to Neighbors .... C6
PLAT242_ALERT_2_C Check Low U(eq) as Compared to Neighbors .... C4
PLAT340_ALERT_3_C Low Bond Precision on C-C bonds (x 1000) Ang ... 5
PLAT412_ALERT_2_C Short Intra XH3 .. XHn H9B .. H21C = 1.89 Ang.
PLAT420_ALERT_2_C D-H Without Acceptor N2 - H2 ... ?
PLAT790_ALERT_4_C Centre of Gravity not Within Unit Cell: Resd. # 1
C21 H28 N4 O2 S
Alert level G
REFLT03_ALERT_4_G Please check that the estimate of the number of Friedel pairs is
correct. If it is not, please give the correct count in the
_publ_section_exptl_refinement section of the submitted CIF.
From the CIF: _diffrn_reflns_theta_max 25.00
From the CIF: _reflns_number_total 3703
Count of symmetry unique reflns 2132
Completeness (_total/calc) 173.69%
TEST3: Check Friedels for noncentro structure
Estimate of Friedel pairs measured 1571
Fraction of Friedel pairs measured 0.737
Are heavy atom types Z>Si present yes
0 ALERT level A = In general: serious problem
0 ALERT level B = Potentially serious problem
7 ALERT level C = Check and explain
1 ALERT level G = General alerts; check
0 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
4 ALERT type 2 Indicator that the structure model may be wrong or deficient
1 ALERT type 3 Indicator that the structure quality may be low
3 ALERT type 4 Improvement, methodology, query or suggestion
Data collection: X-AREA (Stoe & Cie, 2001); cell refinement: X-AREA; data reduction: X-RED (Stoe & Cie, 2001); program(s) used to solve structure: SHELXS86 (Sheldrick, 1990); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 1990); software used to prepare material for publication: WinGX (Farrugia, 1999).
1-{(2E)-2-[(Aminocarbonothioyl)hydrazono]-2-(3-mesityl-3-
methylcyclobutyl)ethyl}pyrrolidine-2,5-dione
top
Crystal data top
C21H28N4O2S | F(000) = 856 |
Mr = 400.53 | Dx = 1.265 Mg m−3 |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 4921 reflections |
a = 8.8720 (7) Å | θ = 1.2–29.8° |
b = 10.8100 (11) Å | µ = 0.18 mm−1 |
c = 21.9284 (19) Å | T = 293 K |
V = 2103.1 (3) Å3 | Shapeless, colourless |
Z = 4 | 0.52 × 0.34 × 0.22 mm |
Data collection top
Stoe IPDS 2 diffractometer | 3703 independent reflections |
Radiation source: fine-focus sealed tube | 2270 reflections with I > 2σ(I) |
Plane graphite monochromator | Rint = 0.044 |
Detector resolution: 6.67 pixels mm-1 | θmax = 25.0°, θmin = 1.9° |
φ scans | h = −10→9 |
Absorption correction: integration (X-RED; Stoe & Cie, 2001) | k = −12→11 |
Tmin = 0.936, Tmax = 0.971 | l = −26→26 |
9857 measured reflections | |
Refinement top
Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
Least-squares matrix: full | H-atom parameters constrained |
R[F2 > 2σ(F2)] = 0.043 | w = 1/[σ2(Fo2) + (0.0586P)2] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.110 | (Δ/σ)max < 0.001 |
S = 0.88 | Δρmax = 0.20 e Å−3 |
3703 reflections | Δρmin = −0.18 e Å−3 |
254 parameters | Extinction correction: SHELXL97 (Sheldrick, 1997), Fc* = kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
0 restraints | Extinction coefficient: 0.0032 (11) |
Primary atom site location: structure-invariant direct methods | Absolute structure: Flack (1983), with x Friedel pairs |
Secondary atom site location: difference Fourier map | Absolute structure parameter: 0.00 (13) |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O1 | −0.0857 (4) | −0.0323 (4) | −0.14382 (14) | 0.1229 (13) | |
C6 | −0.1419 (5) | −0.2425 (6) | −0.1106 (2) | 0.1157 (17) | |
H6A | −0.1455 | −0.2825 | −0.1502 | 0.139* | |
H6B | −0.2443 | −0.2285 | −0.0967 | 0.139* | |
C7 | −0.0586 (5) | −0.1233 (5) | −0.11463 (18) | 0.0875 (13) | |
C5 | −0.0575 (5) | −0.3217 (5) | −0.0656 (2) | 0.1064 (15) | |
H5A | −0.1221 | −0.3454 | −0.0319 | 0.128* | |
H5B | −0.0192 | −0.3959 | −0.0851 | 0.128* | |
C12 | 0.3184 (4) | −0.3655 (3) | −0.24173 (14) | 0.0648 (9) | |
H12A | 0.2297 | −0.3146 | −0.2419 | 0.097* | |
H12B | 0.2911 | −0.4491 | −0.2319 | 0.097* | |
H12C | 0.3648 | −0.3633 | −0.2813 | 0.097* | |
N4 | 0.0645 (3) | −0.1326 (3) | −0.07689 (12) | 0.0667 (7) | |
C4 | 0.0674 (5) | −0.2423 (4) | −0.04439 (16) | 0.0776 (10) | |
C3 | 0.1775 (4) | −0.0367 (3) | −0.06958 (17) | 0.0726 (10) | |
H3A | 0.2021 | −0.0295 | −0.0266 | 0.087* | |
H3B | 0.1347 | 0.0415 | −0.0825 | 0.087* | |
C8 | 0.3209 (4) | −0.1577 (3) | −0.15280 (13) | 0.0522 (7) | |
H8 | 0.2261 | −0.1537 | −0.1756 | 0.063* | |
C11 | 0.4303 (4) | −0.3165 (2) | −0.19367 (12) | 0.0482 (7) | |
C10 | 0.4504 (4) | −0.1721 (3) | −0.19732 (13) | 0.0528 (8) | |
H10A | 0.5463 | −0.1429 | −0.1817 | 0.063* | |
H10B | 0.4301 | −0.1378 | −0.2374 | 0.063* | |
C9 | 0.3484 (4) | −0.2920 (3) | −0.13235 (14) | 0.0568 (8) | |
H9A | 0.2568 | −0.3397 | −0.1271 | 0.068* | |
H9B | 0.4132 | −0.2992 | −0.0969 | 0.068* | |
O2 | 0.1597 (4) | −0.2667 (4) | −0.00665 (13) | 0.1083 (10) | |
C1 | 0.3205 (4) | −0.0589 (3) | −0.10468 (13) | 0.0528 (8) | |
C19 | 0.6713 (4) | −0.2810 (3) | −0.28727 (14) | 0.0668 (9) | |
H19A | 0.5768 | −0.2384 | −0.2836 | 0.100* | |
H19B | 0.6763 | −0.3211 | −0.3263 | 0.100* | |
H19C | 0.7525 | −0.2228 | −0.2837 | 0.100* | |
C13 | 0.5705 (4) | −0.3973 (2) | −0.19327 (12) | 0.0487 (7) | |
C14 | 0.6841 (4) | −0.3768 (3) | −0.23728 (13) | 0.0534 (8) | |
C21 | 0.4668 (5) | −0.5378 (3) | −0.10842 (16) | 0.0769 (11) | |
H21A | 0.5036 | −0.6056 | −0.0844 | 0.115* | |
H21B | 0.3798 | −0.5639 | −0.1311 | 0.115* | |
H21C | 0.4396 | −0.4705 | −0.0820 | 0.115* | |
N1 | 0.4429 (3) | 0.0007 (2) | −0.09478 (10) | 0.0573 (7) | |
C18 | 0.5886 (4) | −0.4957 (3) | −0.15214 (13) | 0.0552 (8) | |
N2 | 0.4392 (4) | 0.0900 (2) | −0.04881 (11) | 0.0620 (7) | |
H2 | 0.3548 | 0.1115 | −0.0326 | 0.074* | |
C15 | 0.8135 (4) | −0.4490 (3) | −0.23612 (16) | 0.0651 (9) | |
H15 | 0.8872 | −0.4350 | −0.2655 | 0.078* | |
C17 | 0.7229 (4) | −0.5630 (3) | −0.15342 (16) | 0.0684 (10) | |
H17 | 0.7353 | −0.6268 | −0.1254 | 0.082* | |
C16 | 0.8375 (4) | −0.5399 (3) | −0.19378 (17) | 0.0692 (9) | |
C2 | 0.5686 (5) | 0.1421 (3) | −0.03012 (14) | 0.0603 (8) | |
S1 | 0.56572 (12) | 0.24478 (10) | 0.02692 (4) | 0.0801 (3) | |
N3 | 0.6932 (4) | 0.1101 (3) | −0.05877 (15) | 0.0839 (10) | |
H3C | 0.6895 | 0.0576 | −0.0882 | 0.101* | |
H3D | 0.7781 | 0.1416 | −0.0480 | 0.101* | |
C20 | 0.9799 (4) | −0.6164 (4) | −0.1929 (2) | 0.0994 (14) | |
H20A | 1.0471 | −0.5877 | −0.2241 | 0.149* | |
H20B | 0.9553 | −0.7016 | −0.2001 | 0.149* | |
H20C | 1.0278 | −0.6086 | −0.1538 | 0.149* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O1 | 0.095 (2) | 0.176 (4) | 0.098 (2) | 0.049 (3) | 0.0027 (19) | 0.008 (2) |
C6 | 0.076 (3) | 0.177 (5) | 0.094 (3) | −0.053 (4) | 0.004 (2) | −0.032 (4) |
C7 | 0.057 (3) | 0.139 (4) | 0.066 (2) | 0.009 (3) | 0.004 (2) | −0.022 (2) |
C5 | 0.078 (3) | 0.117 (4) | 0.125 (3) | −0.038 (3) | 0.026 (3) | −0.034 (3) |
C12 | 0.053 (2) | 0.063 (2) | 0.079 (2) | −0.0024 (19) | −0.0095 (18) | −0.0176 (17) |
N4 | 0.0505 (17) | 0.075 (2) | 0.0745 (16) | −0.0022 (17) | 0.0008 (17) | −0.0230 (16) |
C4 | 0.070 (2) | 0.093 (3) | 0.070 (2) | −0.018 (3) | 0.013 (2) | −0.021 (2) |
C3 | 0.064 (2) | 0.059 (2) | 0.096 (2) | 0.001 (2) | 0.006 (2) | −0.0231 (19) |
C8 | 0.0505 (19) | 0.0425 (16) | 0.0635 (18) | 0.0019 (16) | −0.0054 (16) | −0.0099 (14) |
C11 | 0.0472 (18) | 0.0387 (15) | 0.0585 (16) | −0.0009 (15) | −0.0004 (17) | −0.0053 (13) |
C10 | 0.054 (2) | 0.0433 (17) | 0.0615 (17) | −0.0015 (16) | −0.0068 (16) | −0.0038 (13) |
C9 | 0.053 (2) | 0.0474 (19) | 0.0697 (19) | −0.0040 (15) | 0.0065 (16) | −0.0039 (14) |
O2 | 0.111 (2) | 0.125 (3) | 0.0882 (17) | −0.001 (2) | −0.0120 (18) | 0.0003 (18) |
C1 | 0.054 (2) | 0.0423 (16) | 0.0618 (17) | 0.0061 (17) | −0.0028 (16) | −0.0053 (14) |
C19 | 0.065 (2) | 0.060 (2) | 0.076 (2) | −0.0057 (19) | 0.0168 (17) | 0.0013 (17) |
C13 | 0.0480 (17) | 0.0428 (16) | 0.0552 (15) | 0.0006 (15) | −0.0043 (17) | −0.0098 (13) |
C14 | 0.0481 (19) | 0.0476 (17) | 0.0644 (18) | −0.0047 (17) | −0.0007 (16) | −0.0082 (15) |
C21 | 0.104 (3) | 0.049 (2) | 0.078 (2) | 0.010 (2) | 0.014 (2) | 0.0132 (17) |
N1 | 0.0610 (18) | 0.0413 (14) | 0.0695 (16) | −0.0003 (15) | −0.0052 (14) | −0.0104 (12) |
C18 | 0.063 (2) | 0.0431 (17) | 0.0597 (17) | 0.0051 (18) | 0.0007 (16) | −0.0029 (14) |
N2 | 0.0602 (17) | 0.0537 (16) | 0.0721 (16) | −0.0063 (15) | −0.0015 (15) | −0.0188 (13) |
C15 | 0.054 (2) | 0.064 (2) | 0.077 (2) | 0.002 (2) | 0.0056 (18) | −0.0120 (18) |
C17 | 0.081 (3) | 0.053 (2) | 0.071 (2) | 0.012 (2) | −0.0129 (19) | 0.0017 (17) |
C16 | 0.054 (2) | 0.070 (2) | 0.083 (2) | 0.010 (2) | −0.010 (2) | −0.014 (2) |
C2 | 0.071 (2) | 0.0446 (17) | 0.0652 (17) | −0.0022 (19) | −0.007 (2) | −0.0035 (15) |
S1 | 0.0854 (7) | 0.0730 (6) | 0.0819 (5) | −0.0114 (6) | −0.0063 (5) | −0.0265 (5) |
N3 | 0.062 (2) | 0.083 (2) | 0.107 (2) | −0.0051 (18) | −0.0055 (19) | −0.0308 (18) |
C20 | 0.068 (3) | 0.109 (3) | 0.121 (3) | 0.034 (2) | −0.015 (2) | −0.016 (3) |
Geometric parameters (Å, º) top
O1—C7 | 1.198 (5) | C9—H9B | 0.9700 |
C6—C7 | 1.488 (7) | C1—N1 | 1.281 (4) |
C6—C5 | 1.505 (7) | C19—C14 | 1.512 (4) |
C6—H6A | 0.9700 | C19—H19A | 0.9600 |
C6—H6B | 0.9700 | C19—H19B | 0.9600 |
C7—N4 | 1.374 (5) | C19—H19C | 0.9600 |
C5—C4 | 1.477 (6) | C13—C18 | 1.404 (4) |
C5—H5A | 0.9700 | C13—C14 | 1.413 (4) |
C5—H5B | 0.9700 | C14—C15 | 1.388 (5) |
C12—C11 | 1.542 (4) | C21—C18 | 1.514 (5) |
C12—H12A | 0.9600 | C21—H21A | 0.9600 |
C12—H12B | 0.9600 | C21—H21B | 0.9600 |
C12—H12C | 0.9600 | C21—H21C | 0.9600 |
N4—C4 | 1.384 (5) | N1—N2 | 1.396 (3) |
N4—C3 | 1.451 (4) | C18—C17 | 1.397 (5) |
C4—O2 | 1.194 (5) | N2—C2 | 1.343 (4) |
C3—C1 | 1.503 (5) | N2—H2 | 0.8600 |
C3—H3A | 0.9700 | C15—C16 | 1.368 (5) |
C3—H3B | 0.9700 | C15—H15 | 0.9300 |
C8—C1 | 1.501 (4) | C17—C16 | 1.371 (5) |
C8—C10 | 1.515 (4) | C17—H17 | 0.9300 |
C8—C9 | 1.539 (4) | C16—C20 | 1.510 (5) |
C8—H8 | 0.9800 | C2—N3 | 1.317 (5) |
C11—C13 | 1.520 (4) | C2—S1 | 1.672 (3) |
C11—C9 | 1.551 (4) | N3—H3C | 0.8600 |
C11—C10 | 1.573 (4) | N3—H3D | 0.8600 |
C10—H10A | 0.9700 | C20—H20A | 0.9600 |
C10—H10B | 0.9700 | C20—H20B | 0.9600 |
C9—H9A | 0.9700 | C20—H20C | 0.9600 |
| | | |
C7—C6—C5 | 106.5 (4) | C11—C9—H9A | 113.8 |
C7—C6—H6A | 110.4 | C8—C9—H9B | 113.8 |
C5—C6—H6A | 110.4 | C11—C9—H9B | 113.8 |
C7—C6—H6B | 110.4 | H9A—C9—H9B | 111.0 |
C5—C6—H6B | 110.4 | N1—C1—C8 | 118.4 (3) |
H6A—C6—H6B | 108.6 | N1—C1—C3 | 123.3 (3) |
O1—C7—N4 | 122.8 (5) | C8—C1—C3 | 118.4 (3) |
O1—C7—C6 | 130.0 (5) | C14—C19—H19A | 109.5 |
N4—C7—C6 | 107.2 (4) | C14—C19—H19B | 109.5 |
C4—C5—C6 | 104.4 (4) | H19A—C19—H19B | 109.5 |
C4—C5—H5A | 110.9 | C14—C19—H19C | 109.5 |
C6—C5—H5A | 110.9 | H19A—C19—H19C | 109.5 |
C4—C5—H5B | 110.9 | H19B—C19—H19C | 109.5 |
C6—C5—H5B | 110.9 | C18—C13—C14 | 118.4 (3) |
H5A—C5—H5B | 108.9 | C18—C13—C11 | 122.2 (3) |
C11—C12—H12A | 109.5 | C14—C13—C11 | 119.3 (3) |
C11—C12—H12B | 109.5 | C15—C14—C13 | 119.3 (3) |
H12A—C12—H12B | 109.5 | C15—C14—C19 | 117.4 (3) |
C11—C12—H12C | 109.5 | C13—C14—C19 | 123.3 (3) |
H12A—C12—H12C | 109.5 | C18—C21—H21A | 109.5 |
H12B—C12—H12C | 109.5 | C18—C21—H21B | 109.5 |
C7—N4—C4 | 112.8 (4) | H21A—C21—H21B | 109.5 |
C7—N4—C3 | 124.3 (4) | C18—C21—H21C | 109.5 |
C4—N4—C3 | 122.8 (3) | H21A—C21—H21C | 109.5 |
O2—C4—N4 | 124.0 (4) | H21B—C21—H21C | 109.5 |
O2—C4—C5 | 127.2 (5) | C1—N1—N2 | 116.7 (3) |
N4—C4—C5 | 108.8 (4) | C17—C18—C13 | 118.6 (3) |
N4—C3—C1 | 114.4 (3) | C17—C18—C21 | 117.8 (3) |
N4—C3—H3A | 108.7 | C13—C18—C21 | 123.5 (3) |
C1—C3—H3A | 108.7 | C2—N2—N1 | 119.3 (3) |
N4—C3—H3B | 108.7 | C2—N2—H2 | 120.3 |
C1—C3—H3B | 108.7 | N1—N2—H2 | 120.3 |
H3A—C3—H3B | 107.6 | C16—C15—C14 | 123.0 (3) |
C1—C8—C10 | 121.8 (3) | C16—C15—H15 | 118.5 |
C1—C8—C9 | 117.8 (2) | C14—C15—H15 | 118.5 |
C10—C8—C9 | 88.3 (2) | C16—C17—C18 | 123.4 (3) |
C1—C8—H8 | 109.0 | C16—C17—H17 | 118.3 |
C10—C8—H8 | 109.0 | C18—C17—H17 | 118.3 |
C9—C8—H8 | 109.0 | C15—C16—C17 | 116.9 (3) |
C13—C11—C12 | 109.4 (2) | C15—C16—C20 | 122.2 (4) |
C13—C11—C9 | 118.4 (2) | C17—C16—C20 | 120.8 (4) |
C12—C11—C9 | 110.5 (3) | N3—C2—N2 | 117.5 (3) |
C13—C11—C10 | 118.5 (3) | N3—C2—S1 | 123.0 (3) |
C12—C11—C10 | 112.3 (3) | N2—C2—S1 | 119.5 (3) |
C9—C11—C10 | 85.9 (2) | C2—N3—H3C | 120.0 |
C8—C10—C11 | 89.0 (2) | C2—N3—H3D | 120.0 |
C8—C10—H10A | 113.8 | H3C—N3—H3D | 120.0 |
C11—C10—H10A | 113.8 | C16—C20—H20A | 109.5 |
C8—C10—H10B | 113.8 | C16—C20—H20B | 109.5 |
C11—C10—H10B | 113.8 | H20A—C20—H20B | 109.5 |
H10A—C10—H10B | 111.0 | C16—C20—H20C | 109.5 |
C8—C9—C11 | 89.0 (2) | H20A—C20—H20C | 109.5 |
C8—C9—H9A | 113.8 | H20B—C20—H20C | 109.5 |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3D···S1i | 0.86 | 2.87 | 3.725 (3) | 173 |
N3—H3C···O1ii | 0.86 | 2.53 | 3.114 (5) | 126 |
Symmetry codes: (i) x+1/2, −y+1/2, −z; (ii) x+1, y, z. |