Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536807042651/om2156sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536807042651/om2156Isup2.hkl |
CCDC reference: 663557
The proton-transfer ion pair was prepared by a reaction between piperazine and pyridine-2,3-dicarboxylic acid. Starting with a 1:1 molar ratio of the reactants in THF, a puffy white precipitate was obtained. By recrystallization in an aqueous solution, pale-yellow crystals were obtained. A solution of Zn(NO3)2.4H2O (130 mg, 0.5 mmol) in water (20 ml) was added to an aqueous solution of (pipzH2)(py-2,3-dc)(253 mg, 1.0 mmol) in water (20 ml) in a 1:2 molar ratio. Colorless crystals of (I) suitable for X-ray characterization were obtained after a few days at room temperature.
The hydrogen atoms of NH2 group and H2O were found in difference Fourier synthesis. The H(C) atom positions were calculated. All hydrogen atoms were refined in isotropic approximation in riding model with the Uiso(H) parameters equal to 1.2 Ueq(Ci) where Ueq(Ci) are the equivalent thermal parameters of the atoms to which corresponding H atoms are bonded.
Here we report a new polymeric compound obtained from reaction of zinc(II) nitrate tetrahydrate with (pipzH2)(py-2,3-dc) as proton-transfer compound. The crystal structure of the title polymeric compound is shown in Fig. 1.Some selected bond distances and bond angles are listed in Table 1. The intermolecular hydrogen bond distances are listed in Table 2.
This compound crystallizes in the triclinic system, space group P1, with one formula in the unit cell. In anionic complex, [Zn(py-2,3-dc)2]2–, the ZnII (site symmetry 1) is hexacoordinated by two nitrogen atoms N1, and N1c (c: -x, -y, -z) and four oxygen atoms O1, O1c, O3a and O3d of carboxylate groups (a: x - 1, y, z; d: -x + 1, -y, -z) of two (py-2,3-dc)2- fragments which also act as bridging ligands between ZnII. O3a and O3d atoms from two neighbor (py-2,3-dc)2- fragments occupy the axial positions, while O1, O1c, N1, N1c from two (py-2,3-dc)2- fragments as bidentate ligands, form the equatorial plane. The N—Zn—N and O—Zn—O bond angles are linear. The four donor atoms of the two coplanar (py-2,3-dc)2- anions form a square-planar arrangement around the ZnII center.
The equatorial Zn—N and Zn—O bond lengths for Zn1 are 2.0543 (10) and 2.0605 (9) Å, respectively. The axial Zn—O bond length [2.2985 (9) Å] is significantly longer than equatorial bond lengths which is consistent with the corresponding data reported in literature (Aghabozorg, Sadr-khanlou et al., 2007). According to bond lengths, bond and torsion angles, arrangement of the six donor atoms around ZnII is a distorted octahedral. The angle between plane passing from pyridine ring (N1/C1—C5) and the plane passing carboxylate group (OCO) is 88.15 (3)°, indicating that these bridging carboxylate groups are almost perpendicular to the aromatic ring.
A considerable feature of the compound (I) is the presence of π–π stacking with distance of 3.8693 (8) Å (1 - x, -1 - y, -z) between two centroids of aromatic rings (Aghabozorg, Zabihi, et al., 2006) (Fig. 2).
In the crystal structure, the spaces between two layers of [Zn(py-2,3-dc)2]2– fragments are filled with layers of (pipzH2)2+ cations and uncoordinated water molecules (Fig. 3). The most important features of the crystal structure of (I) is the presence of a large number of O—H···O, N—H···O and C—H···O hydrogen bonds between (pipzH2)2+ and [Zn(py-2,3-dc)2]2– fragments and uncoordinated water molecules with D···A distances ranging from 2.746 (2) Å to 3.420 (2) Å (Table 2). Ion pairing and π–π stacking are also effective in the stabilization of the crystal structure. These interactions result in the formation of a supramolecular structure (Fig. 4).
We have reported cases in which proton transfer from pyridine-2,6-dicarboxylic acid (pydcH2) and benzene-1,2,4,5-tetracarboxylic acid (btcH4) to piperazine (pipz) and 1,10-phenanthroline (phen) resulted in the formation of novel self- assembled (pipzH2)(pydc) (Aghabozorg, Ghadermazi, Manteghi & Nakhjavan, 2006) and (phenH)4(btcH3)2(btcH2) (Aghabozorg, Ghadermazi & Attar Gharamaleki, 2006) systems, respectively. The resulting compounds, with some remaining sites as electron donors, can coordinate to metallic ions (Aghabozorg, Ghasemikhah, Ghadermazi et al., 2006; Aghabozorg, Ghasemikhah, Soleimannejad et al., 2006; Aghabozorg, Sadr-khanlou et al., 2007; Aghabozorg, Zabihi et al., 2006; Aghabozorg, Bahrami et al., 2007).
Data collection: APEX2 (Bruker, 2005); cell refinement: APEX2; data reduction: APEX2; program(s) used to solve structure: SHELXTL (Sheldrick, 1998); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL a.
(C4H12N2)[Zn(C14H6N2O8)2]·4H2O | Z = 1 |
Mr = 555.80 | F(000) = 288 |
Triclinic, P1 | Dx = 1.731 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 6.6535 (6) Å | Cell parameters from 3747 reflections |
b = 8.4170 (8) Å | θ = 2.6–30.1° |
c = 10.3399 (9) Å | µ = 1.23 mm−1 |
α = 78.493 (2)° | T = 100 K |
β = 79.524 (2)° | Plate, colourless |
γ = 71.284 (2)° | 0.35 × 0.31 × 0.20 mm |
V = 533.07 (8) Å3 |
Bruker APEXII CCD area-detector diffractometer | 3105 independent reflections |
Radiation source: fine-focus sealed tube | 2876 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.020 |
φ and ω scans | θmax = 30.1°, θmin = 2.0° |
Absorption correction: multi-scan (APEX2; Bruker, 2005) | h = −9→9 |
Tmin = 0.673, Tmax = 0.791 | k = −11→11 |
6813 measured reflections | l = −14→14 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.027 | Hydrogen site location: mixed |
wR(F2) = 0.071 | H-atom parameters constrained |
S = 1.01 | w = 1/[σ2(Fo2) + (0.0412P)2 + 0.2057P] where P = (Fo2 + 2Fc2)/3 |
3105 reflections | (Δ/σ)max < 0.001 |
160 parameters | Δρmax = 0.45 e Å−3 |
0 restraints | Δρmin = −0.46 e Å−3 |
(C4H12N2)[Zn(C14H6N2O8)2]·4H2O | γ = 71.284 (2)° |
Mr = 555.80 | V = 533.07 (8) Å3 |
Triclinic, P1 | Z = 1 |
a = 6.6535 (6) Å | Mo Kα radiation |
b = 8.4170 (8) Å | µ = 1.23 mm−1 |
c = 10.3399 (9) Å | T = 100 K |
α = 78.493 (2)° | 0.35 × 0.31 × 0.20 mm |
β = 79.524 (2)° |
Bruker APEXII CCD area-detector diffractometer | 3105 independent reflections |
Absorption correction: multi-scan (APEX2; Bruker, 2005) | 2876 reflections with I > 2σ(I) |
Tmin = 0.673, Tmax = 0.791 | Rint = 0.020 |
6813 measured reflections |
R[F2 > 2σ(F2)] = 0.027 | 0 restraints |
wR(F2) = 0.071 | H-atom parameters constrained |
S = 1.01 | Δρmax = 0.45 e Å−3 |
3105 reflections | Δρmin = −0.46 e Å−3 |
160 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Zn1 | 0.0000 | 0.0000 | 0.0000 | 0.01300 (7) | |
O1 | 0.19351 (14) | 0.09480 (11) | −0.15435 (9) | 0.01152 (17) | |
O2 | 0.52743 (14) | 0.02875 (12) | −0.25947 (9) | 0.01283 (18) | |
O3 | 0.96403 (14) | −0.15685 (12) | −0.14797 (9) | 0.01339 (18) | |
O4 | 0.87264 (15) | −0.31878 (12) | −0.25892 (9) | 0.01359 (18) | |
N1 | 0.28879 (16) | −0.17768 (13) | 0.03105 (10) | 0.00907 (18) | |
C1 | 0.45027 (19) | −0.15066 (15) | −0.06130 (11) | 0.0087 (2) | |
C2 | 0.65942 (19) | −0.25589 (15) | −0.05727 (12) | 0.0084 (2) | |
C3 | 0.6983 (2) | −0.38953 (16) | 0.04854 (12) | 0.0124 (2) | |
H3A | 0.8366 | −0.4613 | 0.0549 | 0.015* | |
C4 | 0.5320 (2) | −0.41542 (16) | 0.14380 (12) | 0.0128 (2) | |
H4A | 0.5570 | −0.5034 | 0.2149 | 0.015* | |
C5 | 0.32724 (19) | −0.30735 (16) | 0.13094 (12) | 0.0105 (2) | |
H5A | 0.2139 | −0.3254 | 0.1933 | 0.013* | |
C6 | 0.38876 (19) | 0.00268 (15) | −0.16781 (12) | 0.0089 (2) | |
C7 | 0.84343 (19) | −0.23815 (15) | −0.16344 (12) | 0.0099 (2) | |
N1S | −0.16806 (17) | 0.12631 (13) | −0.56677 (10) | 0.0114 (2) | |
H2S | −0.3041 | 0.1894 | −0.5687 | 0.014* | |
H1S | −0.1003 | 0.1518 | −0.6465 | 0.014* | |
C1S | −0.0706 (2) | 0.16761 (16) | −0.46338 (13) | 0.0136 (2) | |
H1SA | −0.1517 | 0.1488 | −0.3768 | 0.016* | |
H1SB | −0.0750 | 0.2862 | −0.4828 | 0.016* | |
C2S | 0.1594 (2) | 0.05685 (16) | −0.46129 (13) | 0.0124 (2) | |
H2SA | 0.2420 | 0.0797 | −0.5466 | 0.015* | |
H2SB | 0.2215 | 0.0831 | −0.3933 | 0.015* | |
O1W | −0.42260 (15) | 0.66016 (12) | −0.41719 (10) | 0.01514 (18) | |
H1W1 | −0.3478 | 0.6809 | −0.3678 | 0.018* | |
H2W1 | −0.3500 | 0.6226 | −0.4871 | 0.018* | |
O2W | 0.14990 (16) | 0.39242 (12) | −0.35148 (9) | 0.01651 (19) | |
H1W2 | 0.0730 | 0.4798 | −0.3174 | 0.020* | |
H2W2 | 0.1794 | 0.3169 | −0.2840 | 0.020* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Zn1 | 0.00588 (10) | 0.01412 (11) | 0.01298 (11) | 0.00031 (7) | 0.00178 (7) | 0.00357 (7) |
O1 | 0.0074 (4) | 0.0114 (4) | 0.0122 (4) | −0.0002 (3) | 0.0000 (3) | 0.0010 (3) |
O2 | 0.0097 (4) | 0.0146 (4) | 0.0111 (4) | −0.0027 (3) | 0.0012 (3) | 0.0012 (3) |
O3 | 0.0091 (4) | 0.0167 (4) | 0.0141 (4) | −0.0053 (3) | 0.0007 (3) | −0.0013 (3) |
O4 | 0.0125 (4) | 0.0149 (4) | 0.0104 (4) | −0.0006 (3) | 0.0010 (3) | −0.0032 (3) |
N1 | 0.0072 (4) | 0.0103 (4) | 0.0093 (4) | −0.0026 (4) | 0.0000 (3) | −0.0015 (3) |
C1 | 0.0082 (5) | 0.0088 (5) | 0.0085 (5) | −0.0020 (4) | −0.0004 (4) | −0.0018 (4) |
C2 | 0.0076 (5) | 0.0091 (5) | 0.0085 (5) | −0.0025 (4) | −0.0001 (4) | −0.0017 (4) |
C3 | 0.0093 (5) | 0.0124 (5) | 0.0125 (5) | −0.0010 (4) | −0.0013 (4) | 0.0014 (4) |
C4 | 0.0127 (5) | 0.0126 (5) | 0.0110 (5) | −0.0030 (4) | −0.0012 (4) | 0.0018 (4) |
C5 | 0.0099 (5) | 0.0119 (5) | 0.0093 (5) | −0.0043 (4) | 0.0009 (4) | −0.0006 (4) |
C6 | 0.0091 (5) | 0.0086 (5) | 0.0092 (5) | −0.0027 (4) | −0.0017 (4) | −0.0013 (4) |
C7 | 0.0064 (5) | 0.0101 (5) | 0.0090 (5) | 0.0010 (4) | −0.0004 (4) | 0.0017 (4) |
N1S | 0.0100 (5) | 0.0129 (5) | 0.0099 (4) | −0.0031 (4) | −0.0012 (4) | 0.0011 (4) |
C1S | 0.0132 (6) | 0.0128 (5) | 0.0160 (6) | −0.0044 (4) | −0.0015 (4) | −0.0044 (4) |
C2S | 0.0123 (5) | 0.0131 (5) | 0.0131 (5) | −0.0052 (4) | −0.0025 (4) | −0.0017 (4) |
O1W | 0.0122 (4) | 0.0181 (5) | 0.0138 (4) | −0.0042 (4) | −0.0004 (3) | −0.0009 (3) |
O2W | 0.0215 (5) | 0.0121 (4) | 0.0123 (4) | −0.0005 (4) | −0.0012 (4) | −0.0017 (3) |
Zn1—N1i | 2.0543 (10) | C3—H3A | 0.9300 |
Zn1—N1 | 2.0543 (10) | C4—C5 | 1.3869 (17) |
Zn1—O1 | 2.0605 (9) | C4—H4A | 0.9300 |
Zn1—O1i | 2.0605 (9) | C5—H5A | 0.9300 |
Zn1—O3ii | 2.2984 (9) | N1S—C1S | 1.4931 (16) |
Zn1—O3iii | 2.2985 (9) | N1S—C2Sv | 1.4948 (16) |
O1—C6 | 1.2803 (14) | N1S—H2S | 0.8919 |
O2—C6 | 1.2355 (15) | N1S—H1S | 0.8863 |
O3—C7 | 1.2572 (15) | C1S—C2S | 1.5160 (18) |
O3—Zn1iv | 2.2985 (9) | C1S—H1SA | 0.9700 |
O4—C7 | 1.2594 (15) | C1S—H1SB | 0.9700 |
N1—C5 | 1.3381 (16) | C2S—N1Sv | 1.4948 (16) |
N1—C1 | 1.3472 (15) | C2S—H2SA | 0.9700 |
C1—C2 | 1.3921 (16) | C2S—H2SB | 0.9700 |
C1—C6 | 1.5179 (16) | O1W—H1W1 | 0.8500 |
C2—C3 | 1.3980 (16) | O1W—H2W1 | 0.8500 |
C2—C7 | 1.5131 (16) | O2W—H1W2 | 0.8501 |
C3—C4 | 1.3839 (17) | O2W—H2W2 | 0.8500 |
N1i—Zn1—N1 | 180.00 (10) | C5—C4—H4A | 120.7 |
N1i—Zn1—O1 | 99.34 (4) | N1—C5—C4 | 121.61 (11) |
N1—Zn1—O1 | 80.66 (4) | N1—C5—H5A | 119.2 |
N1i—Zn1—O1i | 80.66 (4) | C4—C5—H5A | 119.2 |
N1—Zn1—O1i | 99.34 (4) | O2—C6—O1 | 125.37 (11) |
O1—Zn1—O1i | 180.00 (7) | O2—C6—C1 | 118.55 (11) |
N1i—Zn1—O3ii | 88.21 (4) | O1—C6—C1 | 116.08 (10) |
N1—Zn1—O3ii | 91.79 (4) | O3—C7—O4 | 124.35 (11) |
O1—Zn1—O3ii | 94.38 (3) | O3—C7—C2 | 119.85 (11) |
O1i—Zn1—O3ii | 85.62 (3) | O4—C7—C2 | 115.61 (11) |
N1i—Zn1—O3iii | 91.79 (4) | C1S—N1S—C2Sv | 110.07 (10) |
N1—Zn1—O3iii | 88.21 (4) | C1S—N1S—H2S | 111.2 |
O1—Zn1—O3iii | 85.62 (3) | C2Sv—N1S—H2S | 108.8 |
O1i—Zn1—O3iii | 94.38 (3) | C1S—N1S—H1S | 109.5 |
O3ii—Zn1—O3iii | 180.00 (3) | C2Sv—N1S—H1S | 111.3 |
C6—O1—Zn1 | 114.73 (8) | H2S—N1S—H1S | 105.9 |
C7—O3—Zn1iv | 140.01 (8) | N1S—C1S—C2S | 109.90 (10) |
C5—N1—C1 | 120.13 (11) | N1S—C1S—H1SA | 109.7 |
C5—N1—Zn1 | 127.08 (8) | C2S—C1S—H1SA | 109.7 |
C1—N1—Zn1 | 112.76 (8) | N1S—C1S—H1SB | 109.7 |
N1—C1—C2 | 121.76 (11) | C2S—C1S—H1SB | 109.7 |
N1—C1—C6 | 115.51 (10) | H1SA—C1S—H1SB | 108.2 |
C2—C1—C6 | 122.72 (10) | N1Sv—C2S—C1S | 110.09 (10) |
C1—C2—C3 | 117.62 (11) | N1Sv—C2S—H2SA | 109.6 |
C1—C2—C7 | 123.78 (11) | C1S—C2S—H2SA | 109.6 |
C3—C2—C7 | 118.54 (10) | N1Sv—C2S—H2SB | 109.6 |
C4—C3—C2 | 120.27 (11) | C1S—C2S—H2SB | 109.6 |
C4—C3—H3A | 119.9 | H2SA—C2S—H2SB | 108.2 |
C2—C3—H3A | 119.9 | H1W1—O1W—H2W1 | 113.2 |
C3—C4—C5 | 118.57 (11) | H1W2—O2W—H2W2 | 103.3 |
C3—C4—H4A | 120.7 | ||
N1i—Zn1—O1—C6 | −175.52 (8) | C1—C2—C3—C4 | 0.88 (18) |
N1—Zn1—O1—C6 | 4.48 (8) | C7—C2—C3—C4 | −176.55 (11) |
O3ii—Zn1—O1—C6 | 95.58 (8) | C2—C3—C4—C5 | 0.63 (19) |
O3iii—Zn1—O1—C6 | −84.42 (8) | C1—N1—C5—C4 | 0.91 (18) |
O1—Zn1—N1—C5 | 176.22 (11) | Zn1—N1—C5—C4 | −177.46 (9) |
O1i—Zn1—N1—C5 | −3.78 (11) | C3—C4—C5—N1 | −1.56 (19) |
O3ii—Zn1—N1—C5 | 82.07 (10) | Zn1—O1—C6—O2 | 174.12 (10) |
O3iii—Zn1—N1—C5 | −97.93 (10) | Zn1—O1—C6—C1 | −5.63 (13) |
O1—Zn1—N1—C1 | −2.26 (8) | N1—C1—C6—O2 | −176.02 (10) |
O1i—Zn1—N1—C1 | 177.74 (8) | C2—C1—C6—O2 | 4.81 (17) |
O3ii—Zn1—N1—C1 | −96.40 (8) | N1—C1—C6—O1 | 3.75 (15) |
O3iii—Zn1—N1—C1 | 83.60 (8) | C2—C1—C6—O1 | −175.42 (11) |
C5—N1—C1—C2 | 0.71 (17) | Zn1iv—O3—C7—O4 | −177.67 (8) |
Zn1—N1—C1—C2 | 179.30 (9) | Zn1iv—O3—C7—C2 | −2.98 (19) |
C5—N1—C1—C6 | −178.48 (10) | C1—C2—C7—O3 | 96.11 (14) |
Zn1—N1—C1—C6 | 0.12 (12) | C3—C2—C7—O3 | −86.63 (15) |
N1—C1—C2—C3 | −1.58 (18) | C1—C2—C7—O4 | −88.75 (14) |
C6—C1—C2—C3 | 177.55 (11) | C3—C2—C7—O4 | 88.51 (14) |
N1—C1—C2—C7 | 175.70 (11) | C2Sv—N1S—C1S—C2S | 58.59 (14) |
C6—C1—C2—C7 | −5.17 (18) | N1S—C1S—C2S—N1Sv | −58.60 (14) |
Symmetry codes: (i) −x, −y, −z; (ii) −x+1, −y, −z; (iii) x−1, y, z; (iv) x+1, y, z; (v) −x, −y, −z−1. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1S—H2S···O1Wvi | 0.89 | 1.87 | 2.753 (2) | 174 |
N1S—H1S···O3vii | 0.89 | 2.15 | 3.012 (1) | 164 |
N1S—H1S···O4vii | 0.89 | 2.35 | 3.054 (1) | 137 |
O1W—H1W1···O4viii | 0.85 | 2.01 | 2.842 (2) | 168 |
O1W—H2W1···O2Wix | 0.85 | 1.93 | 2.746 (2) | 159 |
O2W—H1W2···O4viii | 0.85 | 1.92 | 2.763 (1) | 172 |
O2W—H2W2···O1 | 0.85 | 2.06 | 2.868 (1) | 159 |
C2S—H2SA···O2vii | 0.97 | 2.43 | 3.298 (2) | 148 |
C2S—H2SA···O4vii | 0.97 | 2.58 | 3.264 (2) | 128 |
C2S—H2SB···O1 | 0.97 | 2.46 | 3.307 (2) | 145 |
C2S—H2SB···O2 | 0.97 | 2.54 | 3.420 (2) | 151 |
C4—H4A···O1Wi | 0.93 | 2.43 | 3.264 (2) | 150 |
Symmetry codes: (i) −x, −y, −z; (vi) −x−1, −y+1, −z−1; (vii) −x+1, −y, −z−1; (viii) x−1, y+1, z; (ix) −x, −y+1, −z−1. |
Experimental details
Crystal data | |
Chemical formula | (C4H12N2)[Zn(C14H6N2O8)2]·4H2O |
Mr | 555.80 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 100 |
a, b, c (Å) | 6.6535 (6), 8.4170 (8), 10.3399 (9) |
α, β, γ (°) | 78.493 (2), 79.524 (2), 71.284 (2) |
V (Å3) | 533.07 (8) |
Z | 1 |
Radiation type | Mo Kα |
µ (mm−1) | 1.23 |
Crystal size (mm) | 0.35 × 0.31 × 0.20 |
Data collection | |
Diffractometer | Bruker APEXII CCD area-detector |
Absorption correction | Multi-scan (APEX2; Bruker, 2005) |
Tmin, Tmax | 0.673, 0.791 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 6813, 3105, 2876 |
Rint | 0.020 |
(sin θ/λ)max (Å−1) | 0.705 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.027, 0.071, 1.01 |
No. of reflections | 3105 |
No. of parameters | 160 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.45, −0.46 |
Computer programs: APEX2 (Bruker, 2005), APEX2, SHELXTL (Sheldrick, 1998), SHELXTL a.
Zn1—N1 | 2.0543 (10) | Zn1—O3i | 2.2985 (9) |
Zn1—O1 | 2.0605 (9) | ||
N1ii—Zn1—O1 | 99.34 (4) | N1—Zn1—O3i | 88.21 (4) |
N1—Zn1—O1 | 80.66 (4) | O1—Zn1—O3i | 85.62 (3) |
N1ii—Zn1—O3i | 91.79 (4) | O1ii—Zn1—O3i | 94.38 (3) |
C2—C1—C6—O2 | 4.81 (17) | C1—C2—C7—O3 | 96.11 (14) |
C2—C1—C6—O1 | −175.42 (11) | C1—C2—C7—O4 | −88.75 (14) |
Symmetry codes: (i) x−1, y, z; (ii) −x, −y, −z. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1S—H2S···O1Wiii | 0.89 | 1.87 | 2.753 (2) | 174 |
N1S—H1S···O3iv | 0.89 | 2.15 | 3.012 (1) | 164 |
N1S—H1S···O4iv | 0.89 | 2.35 | 3.054 (1) | 137 |
O1W—H1W1···O4v | 0.85 | 2.01 | 2.842 (2) | 168 |
O1W—H2W1···O2Wvi | 0.85 | 1.93 | 2.746 (2) | 159 |
O2W—H1W2···O4v | 0.85 | 1.92 | 2.763 (1) | 172 |
O2W—H2W2···O1 | 0.85 | 2.06 | 2.868 (1) | 159 |
C2S—H2SA···O2iv | 0.97 | 2.43 | 3.298 (2) | 148 |
C2S—H2SA···O4iv | 0.97 | 2.58 | 3.264 (2) | 128 |
C2S—H2SB···O1 | 0.97 | 2.46 | 3.307 (2) | 145 |
C2S—H2SB···O2 | 0.97 | 2.54 | 3.420 (2) | 151 |
C4—H4A···O1Wii | 0.93 | 2.43 | 3.264 (2) | 150 |
Symmetry codes: (ii) −x, −y, −z; (iii) −x−1, −y+1, −z−1; (iv) −x+1, −y, −z−1; (v) x−1, y+1, z; (vi) −x, −y+1, −z−1. |
Here we report a new polymeric compound obtained from reaction of zinc(II) nitrate tetrahydrate with (pipzH2)(py-2,3-dc) as proton-transfer compound. The crystal structure of the title polymeric compound is shown in Fig. 1.Some selected bond distances and bond angles are listed in Table 1. The intermolecular hydrogen bond distances are listed in Table 2.
This compound crystallizes in the triclinic system, space group P1, with one formula in the unit cell. In anionic complex, [Zn(py-2,3-dc)2]2–, the ZnII (site symmetry 1) is hexacoordinated by two nitrogen atoms N1, and N1c (c: -x, -y, -z) and four oxygen atoms O1, O1c, O3a and O3d of carboxylate groups (a: x - 1, y, z; d: -x + 1, -y, -z) of two (py-2,3-dc)2- fragments which also act as bridging ligands between ZnII. O3a and O3d atoms from two neighbor (py-2,3-dc)2- fragments occupy the axial positions, while O1, O1c, N1, N1c from two (py-2,3-dc)2- fragments as bidentate ligands, form the equatorial plane. The N—Zn—N and O—Zn—O bond angles are linear. The four donor atoms of the two coplanar (py-2,3-dc)2- anions form a square-planar arrangement around the ZnII center.
The equatorial Zn—N and Zn—O bond lengths for Zn1 are 2.0543 (10) and 2.0605 (9) Å, respectively. The axial Zn—O bond length [2.2985 (9) Å] is significantly longer than equatorial bond lengths which is consistent with the corresponding data reported in literature (Aghabozorg, Sadr-khanlou et al., 2007). According to bond lengths, bond and torsion angles, arrangement of the six donor atoms around ZnII is a distorted octahedral. The angle between plane passing from pyridine ring (N1/C1—C5) and the plane passing carboxylate group (OCO) is 88.15 (3)°, indicating that these bridging carboxylate groups are almost perpendicular to the aromatic ring.
A considerable feature of the compound (I) is the presence of π–π stacking with distance of 3.8693 (8) Å (1 - x, -1 - y, -z) between two centroids of aromatic rings (Aghabozorg, Zabihi, et al., 2006) (Fig. 2).
In the crystal structure, the spaces between two layers of [Zn(py-2,3-dc)2]2– fragments are filled with layers of (pipzH2)2+ cations and uncoordinated water molecules (Fig. 3). The most important features of the crystal structure of (I) is the presence of a large number of O—H···O, N—H···O and C—H···O hydrogen bonds between (pipzH2)2+ and [Zn(py-2,3-dc)2]2– fragments and uncoordinated water molecules with D···A distances ranging from 2.746 (2) Å to 3.420 (2) Å (Table 2). Ion pairing and π–π stacking are also effective in the stabilization of the crystal structure. These interactions result in the formation of a supramolecular structure (Fig. 4).