The purine fragment of the title compound, C
14H
21N
5, is planar and the dimethylamino group is almost coplanar with it. The cyclohexyl fragment (in a chair conformation) is disordered between two positions. C—H
N hydrogen bonds determine the crystal packing.
Supporting information
CCDC reference: 162820
Key indicators
- Single-crystal X-ray study
- T = 293 K
- Mean (C-C) = 0.003 Å
- Disorder in main residue
- R factor = 0.057
- wR factor = 0.124
- Data-to-parameter ratio = 15.2
checkCIF results
No syntax errors found
ADDSYM reports no extra symmetry
Alert Level C:
PLAT_301 Alert C Main Residue Disorder ........................ 24.00 Perc.
0 Alert Level A = Potentially serious problem
0 Alert Level B = Potential problem
1 Alert Level C = Please check
Colourless crystals of (I) were grown from ethanol by slow evaporation.
The sum of site-occupancy factors for the disordered fragment was constrained to
unity. The C atoms in the less occupied cyclohexane ring were refined
isotropically and the Uiso value of C94 was fixed; bond lengths and
angles in this fragment were constrained to typical values.
Data collection: CAD-4 Software (Enraf-Nonius, 1989); cell refinement: CAD-4 Software; data reduction: ENPROC (Rettig, 1978); program(s) used to solve structure: SHELXS97 (Sheldrick, 1990); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: Stereochemical Workstation (Siemens, 1989).
9-(Cyclohexylmethyl)-6-(dimethylamino)-9
H-purine
top
Crystal data top
C14H21N5 | F(000) = 560 |
Mr = 259.36 | Dx = 1.178 Mg m−3 |
Monoclinic, P21/n | Cu Kα radiation, λ = 1.54178 Å |
a = 5.7702 (5) Å | Cell parameters from 25 reflections |
b = 11.321 (1) Å | θ = 11–37° |
c = 22.390 (1) Å | µ = 0.59 mm−1 |
β = 91.47 (1)° | T = 293 K |
V = 1462.1 (2) Å3 | Block, colourless |
Z = 4 | 0.25 × 0.2 × 0.1 mm |
Data collection top
CAD-4F four-circle diffractometer | Rint = 0.043 |
Radiation source: fine-focus sealed tube | θmax = 74.8°, θmin = 4.0° |
Ni-filter monochromator | h = 0→7 |
ω/2θ scans | k = −14→14 |
6589 measured reflections | l = −28→28 |
2992 independent reflections | 2 standard reflections every 33 min |
2162 reflections with I > 2σ(I) | intensity decay: 3% |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.057 | H-atom parameters constrained |
wR(F2) = 0.124 | w = 1/[σ2(Fo2) + (0.01P)2 + 0.5P] where P = (Fo2 + 2Fc2)/3 |
S = 1.03 | (Δ/σ)max = 0.001 |
2992 reflections | Δρmax = 0.24 e Å−3 |
197 parameters | Δρmin = −0.17 e Å−3 |
12 restraints | Extinction correction: SHELXL97, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0173 (10) |
Crystal data top
C14H21N5 | V = 1462.1 (2) Å3 |
Mr = 259.36 | Z = 4 |
Monoclinic, P21/n | Cu Kα radiation |
a = 5.7702 (5) Å | µ = 0.59 mm−1 |
b = 11.321 (1) Å | T = 293 K |
c = 22.390 (1) Å | 0.25 × 0.2 × 0.1 mm |
β = 91.47 (1)° | |
Data collection top
CAD-4F four-circle diffractometer | Rint = 0.043 |
6589 measured reflections | 2 standard reflections every 33 min |
2992 independent reflections | intensity decay: 3% |
2162 reflections with I > 2σ(I) | |
Refinement top
R[F2 > 2σ(F2)] = 0.057 | 12 restraints |
wR(F2) = 0.124 | H-atom parameters constrained |
S = 1.03 | Δρmax = 0.24 e Å−3 |
2992 reflections | Δρmin = −0.17 e Å−3 |
197 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | Occ. (<1) |
N1 | 0.1431 (3) | 0.66126 (15) | 0.16416 (7) | 0.0711 (5) | |
C2 | 0.2735 (4) | 0.60225 (18) | 0.20362 (10) | 0.0728 (6) | |
H2 | 0.2292 | 0.5243 | 0.2098 | 0.087* | |
N3 | 0.4571 (3) | 0.63731 (14) | 0.23547 (7) | 0.0680 (5) | |
C4 | 0.5077 (3) | 0.75039 (16) | 0.22279 (8) | 0.0573 (4) | |
C5 | 0.3897 (3) | 0.82457 (16) | 0.18354 (8) | 0.0590 (5) | |
C6 | 0.1953 (3) | 0.77528 (18) | 0.15283 (8) | 0.0638 (5) | |
N6 | 0.0565 (3) | 0.83347 (17) | 0.11345 (8) | 0.0817 (5) | |
C61 | −0.1364 (4) | 0.7738 (3) | 0.08395 (11) | 0.1008 (8) | |
H61A | −0.2164 | 0.8280 | 0.0577 | 0.141* | |
H61B | −0.2411 | 0.7454 | 0.1133 | 0.141* | |
H61C | −0.0798 | 0.7084 | 0.0613 | 0.141* | |
C62 | 0.0878 (5) | 0.9563 (2) | 0.09911 (11) | 0.1073 (9) | |
H62A | −0.0292 | 0.9804 | 0.0704 | 0.150* | |
H62B | 0.2383 | 0.9676 | 0.0827 | 0.150* | |
H62C | 0.0750 | 1.0030 | 0.1347 | 0.150* | |
N7 | 0.5010 (3) | 0.93380 (14) | 0.18187 (7) | 0.0717 (5) | |
C8 | 0.6753 (4) | 0.92211 (18) | 0.21938 (9) | 0.0713 (6) | |
H8 | 0.7805 | 0.9826 | 0.2275 | 0.086* | |
N9 | 0.6909 (3) | 0.81419 (14) | 0.24574 (7) | 0.0625 (4) | |
C9 | 0.8640 (3) | 0.77403 (19) | 0.28973 (9) | 0.0713 (6) | |
H9A | 1.0009 | 0.8232 | 0.2867 | 0.086* | 0.843 (3) |
H9B | 0.9083 | 0.6938 | 0.2799 | 0.086* | 0.843 (3) |
H9C | 1.0183 | 0.7897 | 0.2755 | 0.086* | 0.157 (3) |
H9D | 0.8489 | 0.6896 | 0.2958 | 0.086* | 0.157 (3) |
C91A | 0.7850 (4) | 0.7771 (2) | 0.35435 (10) | 0.0629 (6) | 0.843 (3) |
H91A | 0.6377 | 0.7343 | 0.3561 | 0.075* | 0.843 (3) |
C92A | 0.7449 (6) | 0.9017 (2) | 0.37642 (11) | 0.0886 (10) | 0.843 (3) |
H92A | 0.6244 | 0.9383 | 0.3517 | 0.106* | 0.843 (3) |
H92B | 0.8859 | 0.9472 | 0.3719 | 0.106* | 0.843 (3) |
C93A | 0.6745 (8) | 0.9063 (3) | 0.44153 (13) | 0.1041 (11) | 0.843 (3) |
H93A | 0.6612 | 0.9881 | 0.4540 | 0.125* | 0.843 (3) |
H93B | 0.5242 | 0.8692 | 0.4455 | 0.125* | 0.843 (3) |
C94A | 0.8493 (7) | 0.8443 (3) | 0.48122 (13) | 0.1027 (12) | 0.843 (3) |
H94A | 0.7957 | 0.8438 | 0.5219 | 0.123* | 0.843 (3) |
H94B | 0.9953 | 0.8868 | 0.4808 | 0.123* | 0.843 (3) |
C95A | 0.8862 (7) | 0.7190 (3) | 0.46047 (14) | 0.1185 (14) | 0.843 (3) |
H95A | 0.7436 | 0.6746 | 0.4645 | 0.142* | 0.843 (3) |
H95B | 1.0048 | 0.6819 | 0.4856 | 0.142* | 0.843 (3) |
C96A | 0.9590 (6) | 0.7154 (3) | 0.39590 (13) | 0.0969 (11) | 0.843 (3) |
H96A | 0.9750 | 0.6338 | 0.3835 | 0.116* | 0.843 (3) |
H96B | 1.1091 | 0.7532 | 0.3927 | 0.116* | 0.843 (3) |
C91B | 0.8324 (18) | 0.8399 (14) | 0.3453 (4) | 0.065 (4)* | 0.157 (3) |
H91B | 0.8395 | 0.9247 | 0.3370 | 0.078* | 0.157 (3) |
C92B | 0.6039 (17) | 0.8115 (14) | 0.3726 (5) | 0.085 (4)* | 0.157 (3) |
H92C | 0.5818 | 0.7266 | 0.3722 | 0.102* | 0.157 (3) |
H92D | 0.4804 | 0.8465 | 0.3483 | 0.102* | 0.157 (3) |
C93B | 0.586 (2) | 0.8558 (19) | 0.4360 (6) | 0.115 (9)* | 0.157 (3) |
H93C | 0.4459 | 0.8252 | 0.4532 | 0.137* | 0.157 (3) |
H93D | 0.5765 | 0.9413 | 0.4357 | 0.137* | 0.157 (3) |
C94B | 0.796 (3) | 0.818 (2) | 0.4746 (5) | 0.120* | 0.157 (3) |
H94C | 0.8008 | 0.7321 | 0.4773 | 0.144* | 0.157 (3) |
H94D | 0.7825 | 0.8491 | 0.5147 | 0.144* | 0.157 (3) |
C95B | 1.019 (2) | 0.8635 (16) | 0.4467 (6) | 0.120 (7)* | 0.157 (3) |
H95C | 1.1523 | 0.8436 | 0.4720 | 0.144* | 0.157 (3) |
H95D | 1.0124 | 0.9487 | 0.4425 | 0.144* | 0.157 (3) |
C96B | 1.0406 (17) | 0.8049 (14) | 0.3848 (5) | 0.086 (4)* | 0.157 (3) |
H96C | 1.1826 | 0.8305 | 0.3665 | 0.103* | 0.157 (3) |
H96D | 1.0461 | 0.7197 | 0.3892 | 0.103* | 0.157 (3) |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
N1 | 0.0694 (10) | 0.0694 (11) | 0.0742 (11) | −0.0018 (9) | −0.0039 (8) | −0.0095 (8) |
C2 | 0.0715 (13) | 0.0604 (12) | 0.0863 (14) | −0.0050 (10) | −0.0014 (11) | −0.0020 (10) |
N3 | 0.0696 (10) | 0.0574 (9) | 0.0769 (10) | −0.0002 (8) | −0.0031 (8) | 0.0029 (8) |
C4 | 0.0611 (10) | 0.0560 (10) | 0.0548 (10) | 0.0018 (8) | 0.0029 (8) | −0.0060 (8) |
C5 | 0.0679 (11) | 0.0565 (10) | 0.0527 (9) | 0.0046 (9) | 0.0035 (8) | −0.0043 (8) |
C6 | 0.0666 (11) | 0.0703 (12) | 0.0543 (10) | 0.0087 (10) | 0.0006 (9) | −0.0074 (9) |
N6 | 0.0879 (13) | 0.0860 (13) | 0.0700 (10) | 0.0132 (10) | −0.0181 (9) | −0.0046 (9) |
C61 | 0.0844 (16) | 0.136 (2) | 0.0814 (15) | 0.0163 (16) | −0.0202 (13) | −0.0213 (15) |
C62 | 0.128 (2) | 0.102 (2) | 0.0907 (17) | 0.0200 (17) | −0.0180 (16) | 0.0232 (15) |
N7 | 0.0905 (12) | 0.0561 (9) | 0.0683 (10) | −0.0017 (9) | 0.0005 (9) | −0.0006 (8) |
C8 | 0.0824 (14) | 0.0597 (11) | 0.0717 (12) | −0.0095 (10) | 0.0011 (11) | −0.0081 (10) |
N9 | 0.0659 (10) | 0.0602 (9) | 0.0613 (9) | −0.0012 (8) | −0.0014 (7) | −0.0071 (7) |
C9 | 0.0615 (11) | 0.0750 (13) | 0.0769 (13) | 0.0077 (10) | −0.0088 (10) | −0.0177 (10) |
C91A | 0.0641 (14) | 0.0585 (14) | 0.0652 (14) | −0.0007 (11) | −0.0127 (11) | −0.0012 (11) |
C92A | 0.119 (2) | 0.0758 (18) | 0.0714 (16) | 0.0312 (17) | 0.0126 (15) | −0.0003 (13) |
C93A | 0.135 (3) | 0.104 (3) | 0.0747 (19) | 0.017 (3) | 0.0218 (19) | −0.0086 (17) |
C94A | 0.132 (3) | 0.111 (3) | 0.0644 (16) | −0.032 (2) | −0.0079 (18) | −0.0121 (16) |
C95A | 0.171 (4) | 0.096 (2) | 0.085 (2) | −0.005 (2) | −0.064 (2) | 0.0058 (17) |
C96A | 0.115 (2) | 0.0776 (19) | 0.096 (2) | 0.0256 (17) | −0.0452 (18) | −0.0200 (15) |
Geometric parameters (Å, º) top
N1—C2 | 1.326 (2) | C92A—C93A | 1.524 (4) |
N1—C6 | 1.351 (2) | C92A—H92A | 0.9700 |
C2—N3 | 1.323 (2) | C92A—H92B | 0.9700 |
C2—H2 | 0.9300 | C93A—C94A | 1.501 (5) |
N3—C4 | 1.345 (2) | C93A—H93A | 0.9700 |
C4—N9 | 1.370 (2) | C93A—H93B | 0.9700 |
C4—C5 | 1.382 (2) | C94A—C95A | 1.510 (5) |
C5—N7 | 1.394 (2) | C94A—H94A | 0.9700 |
C5—C6 | 1.416 (3) | C94A—H94B | 0.9700 |
C6—N6 | 1.348 (2) | C95A—C96A | 1.516 (5) |
N6—C62 | 1.440 (3) | C95A—H95A | 0.9700 |
N6—C61 | 1.447 (3) | C95A—H95B | 0.9700 |
C61—H61A | 0.9600 | C96A—H96A | 0.9700 |
C61—H61B | 0.9600 | C96A—H96B | 0.9700 |
C61—H61C | 0.9600 | C91B—C92B | 1.501 (9) |
C62—H62A | 0.9600 | C91B—C96B | 1.525 (9) |
C62—H62B | 0.9600 | C91B—H91B | 0.9800 |
C62—H62C | 0.9600 | C92B—C93B | 1.511 (9) |
N7—C8 | 1.300 (3) | C92B—H92C | 0.9700 |
C8—N9 | 1.359 (2) | C92B—H92D | 0.9700 |
C8—H8 | 0.9300 | C93B—C94B | 1.53 (1) |
N9—C9 | 1.458 (2) | C93B—H93C | 0.9700 |
C9—C91B | 1.47 (1) | C93B—H93D | 0.9700 |
C9—C91A | 1.529 (3) | C94B—C95B | 1.54 (1) |
C9—H9A | 0.9701 | C94B—H94C | 0.9700 |
C9—H9B | 0.9700 | C94B—H94D | 0.9700 |
C9—H9C | 0.9700 | C95B—C96B | 1.544 (9) |
C9—H9D | 0.9700 | C95B—H95C | 0.9700 |
C91A—C92A | 1.514 (3) | C95B—H95D | 0.9700 |
C91A—C96A | 1.521 (3) | C96B—H96C | 0.9700 |
C91A—H91A | 0.9800 | C96B—H96D | 0.9700 |
| | | |
C2—N1—C6 | 118.7 (2) | C94A—C93A—H93A | 109.4 |
N3—C2—N1 | 129.9 (2) | C92A—C93A—H93A | 109.4 |
N3—C2—H2 | 115.1 | C94A—C93A—H93B | 109.4 |
N1—C2—H2 | 115.1 | C92A—C93A—H93B | 109.4 |
C2—N3—C4 | 110.3 (2) | H93A—C93A—H93B | 108.0 |
N3—C4—N9 | 126.3 (2) | C93A—C94A—C95A | 110.8 (3) |
N3—C4—C5 | 127.4 (2) | C93A—C94A—H94A | 109.5 |
N9—C4—C5 | 106.3 (2) | C95A—C94A—H94A | 109.5 |
C4—C5—N7 | 109.7 (2) | C93A—C94A—H94B | 109.5 |
C4—C5—C6 | 116.1 (2) | C95A—C94A—H94B | 109.5 |
N7—C5—C6 | 134.1 (2) | H94A—C94A—H94B | 108.1 |
N6—C6—N1 | 117.3 (2) | C94A—C95A—C96A | 111.3 (3) |
N6—C6—C5 | 125.1 (2) | C94A—C95A—H95A | 109.4 |
N1—C6—C5 | 117.6 (2) | C96A—C95A—H95A | 109.4 |
C6—N6—C62 | 122.8 (2) | C94A—C95A—H95B | 109.4 |
C6—N6—C61 | 120.5 (2) | C96A—C95A—H95B | 109.4 |
C62—N6—C61 | 116.6 (2) | H95A—C95A—H95B | 108.0 |
N6—C61—H61A | 109.5 | C95A—C96A—C91A | 112.1 (3) |
N6—C61—H61B | 109.5 | C95A—C96A—H96A | 109.2 |
H61A—C61—H61B | 109.5 | C91A—C96A—H96A | 109.2 |
N6—C61—H61C | 109.5 | C95A—C96A—H96B | 109.2 |
H61A—C61—H61C | 109.5 | C91A—C96A—H96B | 109.2 |
H61B—C61—H61C | 109.5 | H96A—C96A—H96B | 107.9 |
N6—C62—H62A | 109.5 | C9—C91B—C92B | 111 (1) |
N6—C62—H62B | 109.5 | C9—C91B—C96B | 104.3 (8) |
H62A—C62—H62B | 109.5 | C92B—C91B—C96B | 113.3 (8) |
N6—C62—H62C | 109.5 | C9—C91B—H91B | 109.2 |
H62A—C62—H62C | 109.5 | C92B—C91B—H91B | 109.2 |
H62B—C62—H62C | 109.5 | C96B—C91B—H91B | 109.2 |
C8—N7—C5 | 104.0 (2) | C91B—C92B—C93B | 113.0 (8) |
N7—C8—N9 | 114.4 (2) | C91B—C92B—H92C | 109.0 |
N7—C8—H8 | 122.8 | C93B—C92B—H92C | 109.0 |
N9—C8—H8 | 122.8 | C91B—C92B—H92D | 109.0 |
C8—N9—C4 | 105.6 (2) | C93B—C92B—H92D | 109.0 |
C8—N9—C9 | 127.6 (2) | H92C—C92B—H92D | 107.8 |
C4—N9—C9 | 126.7 (2) | C92B—C93B—C94B | 111.5 (9) |
N9—C9—C91B | 108.5 (5) | C92B—C93B—H93C | 109.3 |
N9—C9—C91A | 114.6 (2) | C94B—C93B—H93C | 109.3 |
N9—C9—H9A | 108.6 | C92B—C93B—H93D | 109.3 |
C91A—C9—H9A | 108.5 | C94B—C93B—H93D | 109.3 |
N9—C9—H9B | 108.6 | H93C—C93B—H93D | 108.0 |
C91A—C9—H9B | 108.8 | C93B—C94B—C95B | 109.4 (9) |
H9A—C9—H9B | 107.6 | C93B—C94B—H94C | 109.8 |
N9—C9—H9C | 109.8 | C95B—C94B—H94C | 109.8 |
C91B—C9—H9C | 108.8 | C93B—C94B—H94D | 109.8 |
N9—C9—H9D | 109.9 | C95B—C94B—H94D | 109.8 |
H9C—C9—H9D | 108.3 | H94C—C94B—H94D | 108.2 |
C92A—C91A—C96A | 109.4 (2) | C94B—C95B—C96B | 107.9 (8) |
C92A—C91A—C9 | 112.5 (2) | C94B—C95B—H95C | 110.1 |
C96A—C91A—C9 | 111.1 (2) | C96B—C95B—H95C | 110.1 |
C92A—C91A—H91A | 107.9 | C94B—C95B—H95D | 110.1 |
C96A—C91A—H91A | 107.9 | C96B—C95B—H95D | 110.1 |
C9—C91A—H91A | 107.9 | H95C—C95B—H95D | 108.4 |
C91A—C92A—C93A | 113.0 (2) | C91B—C96B—C95B | 109.2 (7) |
C91A—C92A—H92A | 109.0 | C91B—C96B—H96C | 109.8 |
C93A—C92A—H92A | 109.0 | C95B—C96B—H96C | 109.8 |
C91A—C92A—H92B | 109.0 | C91B—C96B—H96D | 109.8 |
C93A—C92A—H92B | 109.0 | C95B—C96B—H96D | 109.8 |
H92A—C92A—H92B | 107.8 | H96C—C96B—H96D | 108.3 |
C94A—C93A—C92A | 111.0 (3) | | |
| | | |
C6—N1—C2—N3 | −0.4 (3) | C4—N9—C9—C91B | −112.0 (6) |
N1—C2—N3—C4 | −0.6 (3) | C8—N9—C9—C91A | 99.4 (2) |
C2—N3—C4—N9 | −177.5 (2) | C4—N9—C9—C91A | −79.9 (2) |
C2—N3—C4—C5 | 1.1 (3) | N9—C9—C91A—C92A | −66.4 (3) |
N3—C4—C5—N7 | −178.4 (2) | C91B—C9—C91A—C92A | 18.4 (8) |
N9—C4—C5—N7 | 0.5 (2) | N9—C9—C91A—C96A | 170.6 (2) |
N3—C4—C5—C6 | −0.7 (3) | C91B—C9—C91A—C96A | −104.6 (9) |
N9—C4—C5—C6 | 178.1 (1) | C96A—C91A—C92A—C93A | −53.9 (4) |
C2—N1—C6—N6 | −178.6 (2) | C9—C91A—C92A—C93A | −177.9 (3) |
C2—N1—C6—C5 | 0.8 (3) | C91A—C92A—C93A—C94A | 55.4 (4) |
C4—C5—C6—N6 | 179.1 (2) | C92A—C93A—C94A—C95A | −55.3 (4) |
N7—C5—C6—N6 | −4.0 (3) | C93A—C94A—C95A—C96A | 56.4 (4) |
C4—C5—C6—N1 | −0.3 (3) | C94A—C95A—C96A—C91A | −56.6 (4) |
N7—C5—C6—N1 | 176.6 (2) | C92A—C91A—C96A—C95A | 54.4 (3) |
N1—C6—N6—C62 | 177.6 (2) | C9—C91A—C96A—C95A | 179.1 (2) |
C5—C6—N6—C62 | −1.8 (3) | N9—C9—C91B—C92B | 65 (1) |
N1—C6—N6—C61 | −1.4 (3) | C91A—C9—C91B—C92B | −42.0 (8) |
C5—C6—N6—C61 | 179.2 (2) | N9—C9—C91B—C96B | −172.1 (7) |
C4—C5—N7—C8 | −0.5 (2) | C91A—C9—C91B—C96B | 81 (1) |
C6—C5—N7—C8 | −177.6 (2) | C9—C91B—C92B—C93B | 167 (1) |
C5—N7—C8—N9 | 0.4 (2) | C96B—C91B—C92B—C93B | 50 (2) |
N7—C8—N9—C4 | −0.1 (2) | C91B—C92B—C93B—C94B | −51 (2) |
N7—C8—N9—C9 | −179.5 (2) | C92B—C93B—C94B—C95B | 58 (2) |
N3—C4—N9—C8 | 178.6 (2) | C93B—C94B—C95B—C96B | −63 (2) |
C5—C4—N9—C8 | −0.2 (2) | C9—C91B—C96B—C95B | −177 (1) |
N3—C4—N9—C9 | −1.9 (3) | C92B—C91B—C96B—C95B | −55 (1) |
C5—C4—N9—C9 | 179.2 (2) | C94B—C95B—C96B—C91B | 61 (1) |
C8—N9—C9—C91B | 67.3 (6) | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
C8—H8···N3i | 0.93 | 2.45 | 3.369 (3) | 171 |
Symmetry code: (i) −x+3/2, y+1/2, −z+1/2. |
Experimental details
Crystal data |
Chemical formula | C14H21N5 |
Mr | 259.36 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 293 |
a, b, c (Å) | 5.7702 (5), 11.321 (1), 22.390 (1) |
β (°) | 91.47 (1) |
V (Å3) | 1462.1 (2) |
Z | 4 |
Radiation type | Cu Kα |
µ (mm−1) | 0.59 |
Crystal size (mm) | 0.25 × 0.2 × 0.1 |
|
Data collection |
Diffractometer | CAD-4F four-circle diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 6589, 2992, 2162 |
Rint | 0.043 |
(sin θ/λ)max (Å−1) | 0.626 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.057, 0.124, 1.03 |
No. of reflections | 2992 |
No. of parameters | 197 |
No. of restraints | 12 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.24, −0.17 |
Selected geometric parameters (Å, º) topN1—C2 | 1.326 (2) | C5—N7 | 1.394 (2) |
N1—C6 | 1.351 (2) | C5—C6 | 1.416 (3) |
C2—N3 | 1.323 (2) | C6—N6 | 1.348 (2) |
N3—C4 | 1.345 (2) | N7—C8 | 1.300 (3) |
C4—N9 | 1.370 (2) | C8—N9 | 1.359 (2) |
C4—C5 | 1.382 (2) | N9—C9 | 1.458 (2) |
| | | |
C2—N1—C6 | 118.7 (2) | N7—C5—C6 | 134.1 (2) |
N3—C2—N1 | 129.9 (2) | N6—C6—N1 | 117.3 (2) |
C2—N3—C4 | 110.3 (2) | N6—C6—C5 | 125.1 (2) |
N3—C4—N9 | 126.3 (2) | N1—C6—C5 | 117.6 (2) |
N3—C4—C5 | 127.4 (2) | C8—N7—C5 | 104.0 (2) |
N9—C4—C5 | 106.3 (2) | N7—C8—N9 | 114.4 (2) |
C4—C5—N7 | 109.7 (2) | C8—N9—C4 | 105.6 (2) |
C4—C5—C6 | 116.1 (2) | | |
| | | |
C8—N9—C9—C91B | 67.3 (6) | N9—C9—C91A—C92A | −66.4 (3) |
C4—N9—C9—C91B | −112.0 (6) | N9—C9—C91A—C96A | 170.6 (2) |
C8—N9—C9—C91A | 99.4 (2) | N9—C9—C91B—C92B | 65 (1) |
C4—N9—C9—C91A | −79.9 (2) | C91A—C9—C91B—C92B | −42.0 (8) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
C8—H8···N3i | 0.93 | 2.45 | 3.369 (3) | 171.4 |
Symmetry code: (i) −x+3/2, y+1/2, −z+1/2. |
The title compound, (I), was synthesized as part of a series of potential anticonvulsants. Its activity against maximum electroshock-induced seizures was evaluated as moderate. An effective dose, ED50, is 25 mg kg-1 for an ip admission in rats (Kelley et al., 1988). The compound was also tested for an activity against apomorphine-induced aggresive behavior (Kelley et al., 1997), but the results were negative.
Fig. 1 shows a perspective view of the molecule. The purine fragment is almost perfectly planar; the maximum deviation from the least-squares plane through the nine ring atoms is 0.025 (3) Å. The dihedral angle between this plane and the dimethylamino plane is small [3.2 (3)°] and indicates significant conjugation. The bond lengths and angles pattern is quite typical, including the large value of the N1—C2—N3 angle [129.9 (2)°; for 244 similar fragments in CSD (Allen & Kennard, 1993), the mean value is 129 (1)°].
The cyclohexyl fragment is disordered, and the site-occupation factors for two alternative positions (hereinafter referred to as A and B) are 0.841 (3) and 0.159 (3). In both positions, the cyclohexane ring adopts a chair conformation. This conformation is close to an ideal one for molecule A; the largest value of the asymmetry parameter (Duax & Norton, 1976) is 1.10°. A view of disordered fragment is shown in Fig. 2, the dihedral angle between least-squares planes of `seats' of both chairs is 64.3 (5)°.
The molecules are connected into infinite chains along the [010] direction by C—H···N hydrogen bonds. This interaction determines the crystal packing, and therefore can not be treated as an artifact. The linearity of this bond as well as short H···N and C···N distances allow to classify this hydrogen bond as a relatively strong one (cf. Taylor & Kennard, 1982; Reddy et al., 1993; Kubicki, Borowiak, Suwiński & Wagner, 2001). Also, the results of charge–density studies of 1-phenyl-4-nitroimidazole suggest that the C—H···N hydrogen bond of similar geometry has topological features comparable with well defined C—H···O hydrogen bonds (Kubicki, Borowiak, Dutkiewicz et al., 2001).
There are three potential hydrogen-bond acceptors (N1, N3 and N7), but the in-plane access to N1 and N7 is partially hindered by the C61 and C62 methyl groups. In the crystal structure, there are alternate hydrophobic (dimethylamine and cyclohexylmethyl) and hydrophilic (purine) layers (Fig. 3).