Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270103025782/sk1679sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270103025782/sk1679Isup2.hkl |
CCDC reference: 229123
The title compound was obtained from BACHEM and used as received. Crystals were grown by slow diffusion of acetonitrile into an aqueous solution (30 µl) containing the peptide (approximately 1 mg).
Data were collected by measuring three sets of exposures (with the detector set at 2θ = 29°; crystal-to-detector distance = 5.00 cm). Coordinates for water H atoms, which were found in an electron density map, were refined; other H atoms were placed geometrically and treated in the refinement with constraints. Free rotation of amine and methyl groups was permitted. Uiso values for H atoms were set to 1.2Ueq of the carrier atom, or 1.5Ueq for water, methyl and amine groups. The Flack (1983) parameter [−0.04 (8)] confirmed the known absolute structure; Friedel pairs were not merged in the final refinements.
Data collection: SMART (Bruker, 1998); cell refinement: SAINT (Bruker, 2001); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Bruker, 2000); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.
C8H16N2O3S·0.5H2O | F(000) = 984 |
Mr = 229.31 | Dx = 1.365 Mg m−3 |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 5401 reflections |
a = 5.0809 (2) Å | θ = 1.7–27.1° |
b = 17.9228 (9) Å | µ = 0.28 mm−1 |
c = 24.5005 (11) Å | T = 105 K |
V = 2231.11 (17) Å3 | Needle, colourless |
Z = 8 | 0.58 × 0.05 × 0.03 mm |
Siemens SMART CCD diffractometer | 4661 independent reflections |
Radiation source: fine-focus sealed tube | 3741 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.099 |
Detector resolution: 8.3 pixels mm-1 | θmax = 27.1°, θmin = 1.7° |
Sets of exposures each taken over 0.3° ω rotation scans | h = −6→6 |
Absorption correction: multi-scan SADABS (Sheldrick, 1996) | k = −21→21 |
Tmin = 0.829, Tmax = 0.992 | l = −31→31 |
13921 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.040 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.090 | w = 1/[σ2(Fo2) + (0.0356P)2] where P = (Fo2 + 2Fc2)/3 |
S = 0.99 | (Δ/σ)max = 0.001 |
4661 reflections | Δρmax = 0.29 e Å−3 |
290 parameters | Δρmin = −0.35 e Å−3 |
0 restraints | Absolute structure: Flack (1983) |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: −0.04 (8) |
C8H16N2O3S·0.5H2O | V = 2231.11 (17) Å3 |
Mr = 229.31 | Z = 8 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 5.0809 (2) Å | µ = 0.28 mm−1 |
b = 17.9228 (9) Å | T = 105 K |
c = 24.5005 (11) Å | 0.58 × 0.05 × 0.03 mm |
Siemens SMART CCD diffractometer | 4661 independent reflections |
Absorption correction: multi-scan SADABS (Sheldrick, 1996) | 3741 reflections with I > 2σ(I) |
Tmin = 0.829, Tmax = 0.992 | Rint = 0.099 |
13921 measured reflections |
R[F2 > 2σ(F2)] = 0.040 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.090 | Δρmax = 0.29 e Å−3 |
S = 0.99 | Δρmin = −0.35 e Å−3 |
4661 reflections | Absolute structure: Flack (1983) |
290 parameters | Absolute structure parameter: −0.04 (8) |
0 restraints |
x | y | z | Uiso*/Ueq | ||
S1A | 0.00812 (16) | 0.42636 (4) | 0.76208 (3) | 0.02919 (18) | |
O1A | −0.2719 (4) | 0.69891 (10) | 0.65014 (6) | 0.0191 (4) | |
O2A | 0.4030 (4) | 0.68803 (12) | 0.78347 (6) | 0.0304 (5) | |
O3A | 0.1017 (4) | 0.64020 (9) | 0.83967 (6) | 0.0250 (4) | |
N1A | −0.0406 (4) | 0.72992 (10) | 0.55620 (7) | 0.0147 (5) | |
H1A | −0.015 | 0.7703 | 0.5356 | 0.022* | |
H2A | −0.209 | 0.7275 | 0.5662 | 0.022* | |
H3A | 0.001 | 0.6892 | 0.5371 | 0.022* | |
N2A | 0.1111 (5) | 0.67829 (11) | 0.69541 (7) | 0.0165 (5) | |
H4A | 0.271 | 0.67866 | 0.6934 | 0.020* | |
C1A | 0.1286 (6) | 0.73448 (13) | 0.60562 (8) | 0.0156 (5) | |
H11A | 0.289 | 0.7044 | 0.5999 | 0.019* | |
C2A | 0.2054 (6) | 0.81481 (14) | 0.61705 (9) | 0.0247 (6) | |
H21A | 0.300 | 0.8349 | 0.5859 | 0.037* | |
H22A | 0.318 | 0.8167 | 0.6491 | 0.037* | |
H23A | 0.048 | 0.8442 | 0.6235 | 0.037* | |
C3A | −0.0304 (5) | 0.70142 (13) | 0.65273 (8) | 0.0141 (5) | |
C4A | −0.0143 (6) | 0.65213 (13) | 0.74612 (8) | 0.0181 (5) | |
H41A | −0.176 | 0.6856 | 0.7540 | 0.022* | |
C5A | −0.1071 (5) | 0.57157 (14) | 0.74186 (9) | 0.0196 (5) | |
H51A | −0.232 | 0.5672 | 0.7100 | 0.023* | |
H52A | −0.208 | 0.5585 | 0.7760 | 0.023* | |
C6A | 0.1149 (6) | 0.51502 (14) | 0.73445 (10) | 0.0223 (6) | |
H61A | 0.270 | 0.5317 | 0.7531 | 0.027* | |
H62A | 0.156 | 0.5098 | 0.6965 | 0.027* | |
C7A | 0.2883 (6) | 0.36853 (17) | 0.74804 (12) | 0.0369 (8) | |
H71A | 0.256 | 0.3189 | 0.7612 | 0.055* | |
H72A | 0.440 | 0.3886 | 0.7661 | 0.055* | |
H73A | 0.319 | 0.3671 | 0.7094 | 0.055* | |
C8A | 0.1842 (6) | 0.66180 (15) | 0.79313 (9) | 0.0210 (6) | |
S1B | 0.59102 (16) | 0.59987 (4) | 1.08894 (3) | 0.03015 (19) | |
O1B | 0.9833 (4) | 0.60955 (9) | 0.96639 (6) | 0.0170 (4) | |
O2B | 0.9721 (4) | 0.34854 (9) | 1.01264 (6) | 0.0167 (4) | |
O3B | 1.3731 (3) | 0.39718 (9) | 1.00395 (6) | 0.0209 (4) | |
N1B | 0.6177 (5) | 0.64273 (11) | 0.89371 (7) | 0.0195 (5) | |
H1B | 0.626 | 0.6827 | 0.9175 | 0.029* | |
H2B | 0.480 | 0.6497 | 0.8695 | 0.029* | |
H3B | 0.774 | 0.6393 | 0.8746 | 0.029* | |
N2B | 0.8080 (4) | 0.49850 (11) | 0.99211 (7) | 0.0144 (4) | |
H4B | 0.680 | 0.4685 | 0.9883 | 0.017* | |
C1B | 0.5739 (5) | 0.57253 (13) | 0.92526 (9) | 0.0160 (5) | |
H11B | 0.421 | 0.5784 | 0.9467 | 0.019* | |
C2B | 0.5298 (6) | 0.50791 (13) | 0.88594 (9) | 0.0223 (6) | |
H21B | 0.390 | 0.5194 | 0.8624 | 0.033* | |
H22B | 0.489 | 0.4647 | 0.9058 | 0.033* | |
H23B | 0.683 | 0.4999 | 0.8654 | 0.033* | |
C3B | 0.8082 (5) | 0.56245 (13) | 0.96325 (8) | 0.0126 (5) | |
C4B | 1.0208 (6) | 0.47859 (13) | 1.02985 (8) | 0.0146 (5) | |
H41B | 1.163 | 0.5162 | 1.0269 | 0.018* | |
C5B | 0.9229 (6) | 0.47606 (13) | 1.08968 (9) | 0.0210 (6) | |
H51B | 0.758 | 0.4476 | 1.0910 | 0.025* | |
H52B | 1.053 | 0.4492 | 1.1118 | 0.025* | |
C6B | 0.8759 (6) | 0.55269 (14) | 1.11528 (9) | 0.0208 (6) | |
H61B | 1.026 | 0.5830 | 1.1091 | 0.025* | |
H62B | 0.856 | 0.5469 | 1.1536 | 0.025* | |
C7B | 0.6229 (7) | 0.68536 (15) | 1.12659 (10) | 0.0375 (8) | |
H71B | 0.478 | 0.7139 | 1.1213 | 0.056* | |
H72B | 0.767 | 0.7105 | 1.1149 | 0.056* | |
H73B | 0.640 | 0.6749 | 1.1627 | 0.056* | |
C8B | 1.1306 (5) | 0.40232 (13) | 1.01375 (8) | 0.0137 (5) | |
O1W | 1.1342 (5) | 0.73326 (11) | 1.02722 (7) | 0.0274 (5) | |
H1W | 1.277 (7) | 0.7356 (19) | 1.0126 (13) | 0.041* | |
H2W | 1.097 (7) | 0.6961 (17) | 1.0185 (12) | 0.041* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1A | 0.0327 (4) | 0.0212 (4) | 0.0337 (3) | −0.0013 (4) | 0.0087 (3) | 0.0074 (3) |
O1A | 0.0184 (11) | 0.0238 (10) | 0.0150 (8) | −0.0002 (9) | 0.0003 (7) | 0.0033 (7) |
O2A | 0.0210 (11) | 0.0481 (14) | 0.0221 (9) | 0.0003 (11) | −0.0032 (9) | −0.0079 (8) |
O3A | 0.0389 (12) | 0.0223 (10) | 0.0137 (8) | 0.0070 (10) | −0.0032 (8) | 0.0020 (7) |
N1A | 0.0192 (13) | 0.0126 (10) | 0.0123 (8) | −0.0007 (9) | −0.0001 (8) | −0.0002 (7) |
N2A | 0.0152 (11) | 0.0202 (12) | 0.0142 (9) | 0.0010 (10) | −0.0008 (9) | 0.0031 (7) |
C1A | 0.0180 (14) | 0.0157 (14) | 0.0132 (11) | 0.0012 (12) | −0.0005 (10) | 0.0009 (8) |
C2A | 0.0365 (17) | 0.0203 (15) | 0.0173 (12) | −0.0084 (13) | −0.0050 (12) | −0.0009 (10) |
C3A | 0.0185 (15) | 0.0121 (12) | 0.0116 (10) | 0.0001 (12) | 0.0008 (10) | −0.0015 (8) |
C4A | 0.0205 (14) | 0.0218 (14) | 0.0120 (10) | 0.0016 (12) | 0.0020 (10) | 0.0015 (9) |
C5A | 0.0223 (14) | 0.0222 (14) | 0.0142 (10) | −0.0026 (13) | 0.0017 (11) | 0.0024 (9) |
C6A | 0.0277 (15) | 0.0169 (14) | 0.0224 (12) | −0.0025 (13) | 0.0020 (12) | 0.0026 (9) |
C7A | 0.0339 (19) | 0.0259 (17) | 0.0510 (18) | 0.0056 (15) | 0.0010 (15) | 0.0081 (13) |
C8A | 0.0271 (18) | 0.0189 (15) | 0.0170 (12) | 0.0111 (13) | −0.0029 (11) | −0.0033 (9) |
S1B | 0.0330 (4) | 0.0281 (4) | 0.0294 (3) | 0.0123 (3) | −0.0062 (3) | −0.0128 (3) |
O1B | 0.0204 (10) | 0.0126 (9) | 0.0179 (8) | −0.0042 (9) | −0.0029 (7) | 0.0018 (6) |
O2B | 0.0183 (10) | 0.0125 (9) | 0.0191 (8) | −0.0020 (8) | 0.0015 (7) | −0.0016 (6) |
O3B | 0.0173 (10) | 0.0153 (9) | 0.0301 (9) | 0.0001 (8) | 0.0034 (8) | 0.0038 (7) |
N1B | 0.0313 (13) | 0.0108 (11) | 0.0163 (9) | 0.0038 (11) | −0.0100 (9) | −0.0005 (7) |
N2B | 0.0170 (11) | 0.0113 (11) | 0.0150 (9) | −0.0028 (9) | −0.0020 (8) | 0.0014 (7) |
C1B | 0.0196 (14) | 0.0122 (13) | 0.0161 (10) | 0.0007 (11) | −0.0009 (10) | −0.0011 (8) |
C2B | 0.0330 (17) | 0.0135 (13) | 0.0203 (11) | −0.0019 (13) | −0.0092 (12) | −0.0002 (9) |
C3B | 0.0145 (13) | 0.0121 (13) | 0.0112 (10) | 0.0029 (11) | 0.0039 (9) | −0.0035 (8) |
C4B | 0.0193 (14) | 0.0088 (12) | 0.0158 (11) | −0.0008 (12) | −0.0011 (10) | 0.0007 (8) |
C5B | 0.0334 (17) | 0.0154 (13) | 0.0143 (10) | 0.0059 (12) | −0.0033 (11) | 0.0003 (9) |
C6B | 0.0264 (16) | 0.0183 (14) | 0.0176 (11) | 0.0019 (13) | −0.0019 (11) | −0.0058 (9) |
C7B | 0.060 (2) | 0.0214 (16) | 0.0316 (14) | 0.0095 (17) | 0.0069 (16) | −0.0077 (11) |
C8B | 0.0186 (14) | 0.0158 (13) | 0.0067 (9) | −0.0006 (12) | −0.0021 (9) | 0.0025 (8) |
O1W | 0.0311 (13) | 0.0187 (11) | 0.0324 (10) | −0.0056 (10) | 0.0036 (9) | −0.0092 (8) |
S1A—C7A | 1.794 (3) | S1B—C6B | 1.796 (3) |
S1A—C6A | 1.810 (3) | O1B—C3B | 1.229 (3) |
O1A—C3A | 1.229 (3) | O2B—C8B | 1.256 (3) |
O2A—C8A | 1.230 (3) | O3B—C8B | 1.259 (3) |
O3A—C8A | 1.275 (3) | N1B—C1B | 1.493 (3) |
N1A—C1A | 1.487 (3) | N1B—H1B | 0.9230 |
N1A—H1A | 0.8920 | N1B—H2B | 0.9230 |
N1A—H2A | 0.8920 | N1B—H3B | 0.9230 |
N1A—H3A | 0.8920 | N2B—C3B | 1.347 (3) |
N2A—C3A | 1.335 (3) | N2B—C4B | 1.467 (3) |
N2A—C4A | 1.473 (3) | N2B—H4B | 0.8501 |
N2A—H4A | 0.8128 | C1B—C3B | 1.522 (3) |
C1A—C2A | 1.518 (3) | C1B—C2B | 1.523 (3) |
C1A—C3A | 1.528 (3) | C1B—H11B | 0.9427 |
C1A—H11A | 0.9870 | C2B—H21B | 0.9374 |
C2A—H21A | 0.9699 | C2B—H22B | 0.9374 |
C2A—H22A | 0.9699 | C2B—H23B | 0.9374 |
C2A—H23A | 0.9699 | C4B—C8B | 1.528 (3) |
C4A—C5A | 1.523 (3) | C4B—C5B | 1.549 (3) |
C4A—C8A | 1.540 (3) | C4B—H41B | 0.9884 |
C4A—H41A | 1.0369 | C5B—C6B | 1.529 (3) |
C5A—C6A | 1.527 (4) | C5B—H51B | 0.9803 |
C5A—H51A | 1.0100 | C5B—H52B | 0.9803 |
C5A—H52A | 1.0100 | C6B—H61B | 0.9493 |
C6A—H61A | 0.9569 | C6B—H62B | 0.9493 |
C6A—H62A | 0.9569 | C7B—H71B | 0.9072 |
C7A—H71A | 0.9603 | C7B—H72B | 0.9072 |
C7A—H72A | 0.9603 | C7B—H73B | 0.9072 |
C7A—H73A | 0.9603 | O1W—H1W | 0.81 (3) |
S1B—C7B | 1.796 (3) | O1W—H2W | 0.72 (3) |
C7A—S1A—C6A | 101.40 (14) | C1B—N1B—H1B | 109.5 |
C1A—N1A—H1A | 109.5 | C1B—N1B—H2B | 109.5 |
C1A—N1A—H2A | 109.5 | H1B—N1B—H2B | 109.5 |
H1A—N1A—H2A | 109.5 | C1B—N1B—H3B | 109.5 |
C1A—N1A—H3A | 109.5 | H1B—N1B—H3B | 109.5 |
H1A—N1A—H3A | 109.5 | H2B—N1B—H3B | 109.5 |
H2A—N1A—H3A | 109.5 | C3B—N2B—C4B | 122.5 (2) |
C3A—N2A—C4A | 121.8 (2) | C3B—N2B—H4B | 118.7 |
C3A—N2A—H4A | 119.1 | C4B—N2B—H4B | 118.7 |
C4A—N2A—H4A | 119.1 | N1B—C1B—C3B | 107.5 (2) |
N1A—C1A—C2A | 110.56 (19) | N1B—C1B—C2B | 109.58 (17) |
N1A—C1A—C3A | 106.7 (2) | C3B—C1B—C2B | 114.3 (2) |
C2A—C1A—C3A | 111.37 (19) | N1B—C1B—H11B | 108.5 |
N1A—C1A—H11A | 109.4 | C3B—C1B—H11B | 108.5 |
C2A—C1A—H11A | 109.4 | C2B—C1B—H11B | 108.5 |
C3A—C1A—H11A | 109.4 | C1B—C2B—H21B | 109.5 |
C1A—C2A—H21A | 109.5 | C1B—C2B—H22B | 109.5 |
C1A—C2A—H22A | 109.5 | H21B—C2B—H22B | 109.5 |
H21A—C2A—H22A | 109.5 | C1B—C2B—H23B | 109.5 |
C1A—C2A—H23A | 109.5 | H21B—C2B—H23B | 109.5 |
H21A—C2A—H23A | 109.5 | H22B—C2B—H23B | 109.5 |
H22A—C2A—H23A | 109.5 | O1B—C3B—N2B | 123.5 (2) |
O1A—C3A—N2A | 124.5 (2) | O1B—C3B—C1B | 121.5 (2) |
O1A—C3A—C1A | 120.2 (2) | N2B—C3B—C1B | 115.0 (2) |
N2A—C3A—C1A | 115.3 (2) | N2B—C4B—C8B | 108.91 (18) |
N2A—C4A—C5A | 112.21 (18) | N2B—C4B—C5B | 111.5 (2) |
N2A—C4A—C8A | 108.2 (2) | C8B—C4B—C5B | 109.60 (18) |
C5A—C4A—C8A | 111.14 (19) | N2B—C4B—H41B | 108.9 |
N2A—C4A—H41A | 108.4 | C8B—C4B—H41B | 108.9 |
C5A—C4A—H41A | 108.4 | C5B—C4B—H41B | 108.9 |
C8A—C4A—H41A | 108.4 | C6B—C5B—C4B | 114.3 (2) |
C4A—C5A—C6A | 114.1 (2) | C6B—C5B—H51B | 108.7 |
C4A—C5A—H51A | 108.7 | C4B—C5B—H51B | 108.7 |
C6A—C5A—H51A | 108.7 | C6B—C5B—H52B | 108.7 |
C4A—C5A—H52A | 108.7 | C4B—C5B—H52B | 108.7 |
C6A—C5A—H52A | 108.7 | H51B—C5B—H52B | 107.6 |
H51A—C5A—H52A | 107.6 | C5B—C6B—S1B | 113.66 (19) |
C5A—C6A—S1A | 108.47 (18) | C5B—C6B—H61B | 108.8 |
C5A—C6A—H61A | 110.0 | S1B—C6B—H61B | 108.8 |
S1A—C6A—H61A | 110.0 | C5B—C6B—H62B | 108.8 |
C5A—C6A—H62A | 110.0 | S1B—C6B—H62B | 108.8 |
S1A—C6A—H62A | 110.0 | H61B—C6B—H62B | 107.7 |
H61A—C6A—H62A | 108.4 | S1B—C7B—H71B | 109.5 |
S1A—C7A—H71A | 109.5 | S1B—C7B—H72B | 109.5 |
S1A—C7A—H72A | 109.5 | H71B—C7B—H72B | 109.5 |
H71A—C7A—H72A | 109.5 | S1B—C7B—H73B | 109.5 |
S1A—C7A—H73A | 109.5 | H71B—C7B—H73B | 109.5 |
H71A—C7A—H73A | 109.5 | H72B—C7B—H73B | 109.5 |
H72A—C7A—H73A | 109.5 | O2B—C8B—O3B | 124.5 (2) |
O2A—C8A—O3A | 125.8 (2) | O2B—C8B—C4B | 117.3 (2) |
O2A—C8A—C4A | 119.4 (2) | O3B—C8B—C4B | 118.2 (2) |
O3A—C8A—C4A | 114.8 (2) | H1W—O1W—H2W | 99 (4) |
C7B—S1B—C6B | 98.30 (14) | ||
N1A—C1A—C3A—N2A | 159.11 (19) | N1B—C1B—C3B—N2B | −175.58 (19) |
C1A—C3A—N2A—C4A | 173.8 (2) | C1B—C3B—N2B—C4B | 178.65 (19) |
C3A—N2A—C4A—C8A | −156.2 (2) | C3B—N2B—C4B—C8B | −124.4 (2) |
N2A—C4A—C8A—O2A | 0.2 (3) | N2B—C4B—C8B—O2B | −57.8 (2) |
N2A—C4A—C5A—C6A | 64.5 (3) | N2B—C4B—C5B—C6B | −74.5 (3) |
C4A—C5A—C6A—S1A | 152.83 (15) | C4B—C5B—C6B—S1B | 71.8 (3) |
C5A—C6A—S1A—C7A | 178.66 (17) | C5B—C6B—S1B—C7B | −177.3 (2) |
C4A—N2A—C3A—O1A | −4.7 (4) | C4B—N2B—C3B—O1B | −0.8 (3) |
N1A—C1A—C3A—O1A | −22.4 (3) | N1B—C1B—C3B—O1B | 3.8 (3) |
C2A—C1A—C3A—O1A | 98.4 (3) | C2B—C1B—C3B—O1B | 125.7 (2) |
C2A—C1A—C3A—N2A | −80.1 (3) | C2B—C1B—C3B—N2B | −53.7 (3) |
C3A—N2A—C4A—C5A | 80.9 (3) | C3B—N2B—C4B—C5B | 114.5 (2) |
C8A—C4A—C5A—C6A | −56.7 (3) | C8B—C4B—C5B—C6B | 164.8 (2) |
C5A—C4A—C8A—O2A | 123.8 (3) | C5B—C4B—C8B—O2B | 64.4 (3) |
N2A—C4A—C8A—O3A | −179.1 (2) | N2B—C4B—C8B—O3B | 124.0 (2) |
C5A—C4A—C8A—O3A | −55.5 (3) | C5B—C4B—C8B—O3B | −113.7 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1A—H1A···O2Bi | 0.89 | 1.85 | 2.736 (2) | 175 |
N1A—H2A···O2Bii | 0.89 | 2.32 | 2.815 (3) | 115 |
N1A—H3A···O3Biii | 0.89 | 1.86 | 2.748 (2) | 172 |
N2A—H4A···O1Aiv | 0.81 | 2.58 | 3.346 (3) | 158 |
C1A—H11A···O1Aiv | 0.99 | 2.55 | 3.300 (3) | 132 |
C4A—H41A···O2Av | 1.04 | 2.26 | 3.165 (4) | 145 |
N1B—H1B···O1Wvi | 0.92 | 2.03 | 2.950 (3) | 177 |
N1B—H2B···O3A | 0.92 | 2.07 | 2.937 (3) | 157 |
N1B—H2B···O2A | 0.92 | 2.25 | 3.024 (2) | 141 |
N1B—H3B···O3Aiv | 0.92 | 1.87 | 2.793 (3) | 175 |
N2B—H4B···O3Bv | 0.85 | 2.05 | 2.875 (3) | 163 |
C1B—H11B···O1Bv | 0.94 | 2.34 | 3.234 (3) | 157 |
C4B—H41B···S1Biv | 0.99 | 3.05 | 3.901 (3) | 145 |
O1W—H1W···O1Wvii | 0.81 (3) | 2.14 (3) | 2.931 (2) | 167 (3) |
O1W—H2W···O1B | 0.72 (3) | 2.09 (3) | 2.779 (3) | 159 (3) |
Symmetry codes: (i) −x+1, y+1/2, −z+3/2; (ii) −x+1/2, −y+1, z−1/2; (iii) −x+3/2, −y+1, z−1/2; (iv) x+1, y, z; (v) x−1, y, z; (vi) x−1/2, −y+3/2, −z+2; (vii) x+1/2, −y+3/2, −z+2. |
Experimental details
Crystal data | |
Chemical formula | C8H16N2O3S·0.5H2O |
Mr | 229.31 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 105 |
a, b, c (Å) | 5.0809 (2), 17.9228 (9), 24.5005 (11) |
V (Å3) | 2231.11 (17) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.28 |
Crystal size (mm) | 0.58 × 0.05 × 0.03 |
Data collection | |
Diffractometer | Siemens SMART CCD diffractometer |
Absorption correction | Multi-scan SADABS (Sheldrick, 1996) |
Tmin, Tmax | 0.829, 0.992 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 13921, 4661, 3741 |
Rint | 0.099 |
(sin θ/λ)max (Å−1) | 0.641 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.040, 0.090, 0.99 |
No. of reflections | 4661 |
No. of parameters | 290 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.29, −0.35 |
Absolute structure | Flack (1983) |
Absolute structure parameter | −0.04 (8) |
Computer programs: SMART (Bruker, 1998), SAINT (Bruker, 2001), SAINT, SHELXTL (Bruker, 2000), SHELXTL.
S1A—C7A | 1.794 (3) | S1B—C7B | 1.796 (3) |
S1A—C6A | 1.810 (3) | S1B—C6B | 1.796 (3) |
O1A—C3A | 1.229 (3) | O1B—C3B | 1.229 (3) |
O2A—C8A | 1.230 (3) | O2B—C8B | 1.256 (3) |
O3A—C8A | 1.275 (3) | O3B—C8B | 1.259 (3) |
N1A—C1A | 1.487 (3) | N1B—C1B | 1.493 (3) |
N2A—C3A | 1.335 (3) | N2B—C3B | 1.347 (3) |
C7A—S1A—C6A | 101.40 (14) | H1W—O1W—H2W | 99 (4) |
C7B—S1B—C6B | 98.30 (14) | ||
N1A—C1A—C3A—N2A | 159.11 (19) | N1B—C1B—C3B—N2B | −175.58 (19) |
C1A—C3A—N2A—C4A | 173.8 (2) | C1B—C3B—N2B—C4B | 178.65 (19) |
C3A—N2A—C4A—C8A | −156.2 (2) | C3B—N2B—C4B—C8B | −124.4 (2) |
N2A—C4A—C8A—O2A | 0.2 (3) | N2B—C4B—C8B—O2B | −57.8 (2) |
N2A—C4A—C5A—C6A | 64.5 (3) | N2B—C4B—C5B—C6B | −74.5 (3) |
C4A—C5A—C6A—S1A | 152.83 (15) | C4B—C5B—C6B—S1B | 71.8 (3) |
C5A—C6A—S1A—C7A | 178.66 (17) | C5B—C6B—S1B—C7B | −177.3 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1A—H1A···O2Bi | 0.89 | 1.85 | 2.736 (2) | 175 |
N1A—H2A···O2Bii | 0.89 | 2.32 | 2.815 (3) | 115 |
N1A—H3A···O3Biii | 0.89 | 1.86 | 2.748 (2) | 172 |
N2A—H4A···O1Aiv | 0.81 | 2.58 | 3.346 (3) | 158 |
C1A—H11A···O1Aiv | 0.99 | 2.55 | 3.300 (3) | 132 |
C4A—H41A···O2Av | 1.04 | 2.26 | 3.165 (4) | 145 |
N1B—H1B···O1Wvi | 0.92 | 2.03 | 2.950 (3) | 177 |
N1B—H2B···O3A | 0.92 | 2.07 | 2.937 (3) | 157 |
N1B—H2B···O2A | 0.92 | 2.25 | 3.024 (2) | 141 |
N1B—H3B···O3Aiv | 0.92 | 1.87 | 2.793 (3) | 175 |
N2B—H4B···O3Bv | 0.85 | 2.05 | 2.875 (3) | 163 |
C1B—H11B···O1Bv | 0.94 | 2.34 | 3.234 (3) | 157 |
C4B—H41B···S1Biv | 0.99 | 3.05 | 3.901 (3) | 145 |
O1W—H1W···O1Wvii | 0.81 (3) | 2.14 (3) | 2.931 (2) | 167 (3) |
O1W—H2W···O1B | 0.72 (3) | 2.09 (3) | 2.779 (3) | 159 (3) |
Symmetry codes: (i) −x+1, y+1/2, −z+3/2; (ii) −x+1/2, −y+1, z−1/2; (iii) −x+3/2, −y+1, z−1/2; (iv) x+1, y, z; (v) x−1, y, z; (vi) x−1/2, −y+3/2, −z+2; (vii) x+1/2, −y+3/2, −z+2. |
The crystal structure of L-Val-L-Ala (VA; Görbitz & Gundersen, 1996) was the first example of nanotube formation by such a small molecule. Subsequently, the reteroanalogue L-Ala-L-Val (Görbitz, 2002) and a series of other dipeptides with L-Ala, L-Val and L-Ile residues (Görbitz, 2003a) were found to form structures very similar to VA, differing only in the way that side chains partly fill the channels along the hexagonal axes, which translates directly to pore size.
To investigate whether crystallization in the VA class is compatible with dipeptides incorporating unbranched side chains (apart from the methyl group of L-Ala), crystallization and structure determination have been carried out for L-Met-L-Ala (MA) and L-Ala-L-Met (AM). The structure of MA is indeed closely related to the VA-class, but with seven molecules in the asymmetric unit (Görbitz, 2003b).
The asymmetric unit of AM, with two peptide molecules and one water molecule, is shown in Fig. 1. There are no signs of any kind of disorder. Bond lengths and bond angles are normal. Peptide molecule A has an elongated main-chain conformation, in which the carboxylate group is coplanar with the N atom of the peptide bond (Table 1). The L-Met side chain has an unusual gauche+,trans,trans conformation for χ1,χ2 and χ3 (N2A—C4A—C5A—C6A, C4A—C5A—C6A—S1A and C5A—C6A—S1A—C7A, respectively), which has been found previously only for D-Ala-L-Met (in the racemate; Stenkamp & Jensen, 1974; Guillot et al., 2001), for one of the two side chains in cyclo(L-Met-L-Met) (Valle et al., 1990) and for N-formyl-L-Met (Chen & Parthasarathy, 1977).
The main chain of peptide molecule B differs from A mainly in the carboxylate orientation defined by N2B—C4B—C8B—O2B [−57.8 (2)°]. The side-chain gauche- rotamer for χ1 (N2B—C4B—C5B—C6B) and the trans rotamer for χ3 (C5B—C6B—S1B—C7B) are both quite common, but the gauche+ orientation for χ2 (C4B—C5B—C6B—S1B) is very rare, and the gauche-,gauche+,trans combination for χ1,χ2 and χ3 yields a conformation that has not been observed previously for amino acids or peptides in the Cambridge Structural Database (CSD; Allen & Motherwell, 2002).
The packing diagram in Fig. 2 shows that even though some features are shared, like the aggregation of side chains into hydrophobic columns, AM is clearly not a member of the VA class. As was also evident from the P212121 space group, AM lacks hexagonal symmetry, and furthermore, the open channels at the center of each hydrophobic column are missing. In the VA class, these channels are either empty or filled non-stoichiometrically with solvent molecules that can be removed by drying with complete retention of the peptide scaffold (Görbitz & Gundersen, 1996; Görbitz, 2002). The cocrystallized solvent water molecules of AM are located close to the twofold screw axes parallel to the short 5.0809 (2) Å a axis; they form an integral part of the hydrogen-bond network and cannot be removed by drying without destroying the crystal. Hydrogen bonds between water molecules give rise to polymers along the a axis that are surrounded by peptide B molecules, as seen in Fig. 3. Similar columns, with carboxylate groups as acceptors for water H atoms rather than peptide carbonyl groups, have been found for L-Asp-Gly·H2O (Eggleston et al., 1981), for L-Arg-L-Asp·2H2O (Ramakrishnan & Viswamitra, 1988) and twice in the 1:1 complex L-His-L-Ser:Gly-L-Glu·6H2O (Suresh & Vijayan, 1985). L-Pro-Gly (Narasimhan & Chacko, 1982) and L-Pro-Val (Narasimhan et al., 1982) have polymers in which water molecules do not accept amino H atoms.
It was no surprise to find that the structure of AM is completely different from the monoclinic structure of D,L-Ala-L,D-Met (Stenkamp & Jensen, 1974; Guillot et al., 2001), the difference being due to the different directions in which side chains are disposed relative to the main chain for L—L and D,L—L,D diastereomers (Görbitz & Etter, 1992).
The hydrogen-bond geometry is detailed in Table 2. A l l amino H atoms of molecule A are donated to molecule B carboxylate groups and vice verca (including a three-center interaction for H2B; Table 2), except for atom H1B, which is accepted by the water molecule. Neighboring molecules of type A or type B are connected by hydrogen bonds, with the >N—H peptide bond as the donor, and by a number of weak interactions with Cα—H donors (including C4B—H41B···S1B; Fig. 3). A search of the CSD revealed that C—H···S(L-Met) contacts are surprisingly ubiquitous, with H···S distances starting at 2.85 Å. The most common donor is, however, not Cα—H, as in AM, but the terminal methyl group of another L-Met side chain.
In summary, the hydrogen-bond network in AM incorporates two peptide molecules in the asymmetric unit, both with unusual L-Met side-chain conformations, together with a solvent water molecule that forms extended hydrogen-bonded polymers along the shortest crystallographic axis.