The title compounds,
O-benzyl-
N-(benzyloxycarbonyl)threonyl-2,
N-dimethylalaninanilide, C
30H
35N
3O
5, and methyl (4
R)-4-benzyloxy-
N-(benzyloxycarbonyl)valyl-2-(methylalanyl)prolinate, C
30H
39N
3O
7, were obtained from the `azirine coupling' of the corresponding protected amino acids with 2,2,
N-trimethyl-2
H-azirin-3-amine and methyl (4
R)-4-(benzyloxy)-
N-(2,2-dimethyl-2
H-azirin-2-yl)prolinate, respectively. The Aib unit in each molecule has the greatest turn- or helix-inducing effect on the molecular conformation. Intermolecular N-H
O interactions link the molecules of the tripeptide into sheets and those of the dipeptide into extended chains.
Supporting information
CCDC references: 609412; 609413
The syntheses of compounds (III) and (VI) have already been described by Pradeille & Heimgartner (2003). Suitable crystals were obtained by slow evaporation of solutions of the compounds in deuterochloroform and methanol–hexane–ethyl acetate (Ratio?), respectively, at room temperature [m.p. 407–408 K for (III) and 403–407 K for (VI)].
The amide H atoms were located in difference Fourier maps and their positions were refined freely along with individual isotropic displacement parameters. The methyl H atoms were constrained to an ideal geometry (C—H = 0.98 Å) with Uiso(H) = 1.5Ueq(C), but were allowed to rotate freely about the C—C bonds. All other H atoms were placed in geometrically idealized positions and constrained to ride on their parent C atom at distances of 0.95, 0.99 or 1.00 Å for phenyl, methylene or methine groups, respectively, and with Uiso(H) = 1.2Ueq(C). As there are no significant anomalous dispersion effects with these compounds, Friedel opposites were merged prior to the final cycles of refinement. The enantiomers used in the refinement models were chosen so as to correspond with the chirality of the stereogenic centres known from the syntheses of the compounds. For (III), two low-angle reflections were omitted from the final cycles of refinement because their observed intensities were much lower than the calculated values, as a result of being partially obscured by the beam stop.
For both compounds, data collection: COLLECT (Nonius, 2000); cell refinement: DENZO-SMN (Otwinowski & Minor, 1997); data reduction: DENZO-SMN and SCALEPACK (Otwinowski & Minor, 1997); program(s) used to solve structure: SIR92 (Altomare et al., 1994); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEPII (Johnson, 1976); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2003).
(III)
O-benzyl-
N-(benzyloxycarbonyl)threonyl-2,
N-dimethylalaninanilide
top
Crystal data top
C30H35N3O5 | Dx = 1.251 Mg m−3 |
Mr = 517.62 | Melting point: 407 K |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 2773 reflections |
a = 10.4178 (2) Å | θ = 2.0–25.0° |
b = 10.6996 (2) Å | µ = 0.09 mm−1 |
c = 24.6636 (5) Å | T = 160 K |
V = 2749.16 (9) Å3 | Tablet, colourless |
Z = 4 | 0.22 × 0.10 × 0.05 mm |
F(000) = 1104 | |
Data collection top
Nonius KappaCCD area-detector diffractometer | 2388 reflections with I > 2σ(I) |
Radiation source: Nonius FR590 sealed tube generator | Rint = 0.058 |
Horizontally mounted graphite crystal monochromator | θmax = 25.0°, θmin = 2.5° |
Detector resolution: 9 pixels mm-1 | h = 0→12 |
ϕ and ω scans with κ offsets | k = 0→12 |
30620 measured reflections | l = 0→29 |
2759 independent reflections | |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: geom & difmap |
R[F2 > 2σ(F2)] = 0.037 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.090 | w = 1/[σ2(Fo2) + (0.0473P)2 + 0.3586P] where P = (Fo2 + 2Fc2)/3 |
S = 1.07 | (Δ/σ)max = 0.001 |
2757 reflections | Δρmax = 0.17 e Å−3 |
356 parameters | Δρmin = −0.15 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 1997), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0090 (13) |
Crystal data top
C30H35N3O5 | V = 2749.16 (9) Å3 |
Mr = 517.62 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 10.4178 (2) Å | µ = 0.09 mm−1 |
b = 10.6996 (2) Å | T = 160 K |
c = 24.6636 (5) Å | 0.22 × 0.10 × 0.05 mm |
Data collection top
Nonius KappaCCD area-detector diffractometer | 2388 reflections with I > 2σ(I) |
30620 measured reflections | Rint = 0.058 |
2759 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.037 | 0 restraints |
wR(F2) = 0.090 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.07 | Δρmax = 0.17 e Å−3 |
2757 reflections | Δρmin = −0.15 e Å−3 |
356 parameters | |
Special details top
Experimental. Solvent used: deuterochloroform Cooling Device: Oxford Cryosystems Cryostream 700 Crystal mount: glued on a glass fibre Mosaicity (°.): 0.730 (1) Frames collected: 866 Seconds exposure per frame: 200 Degrees rotation per frame: 0.5 Crystal-Detector distance (mm): 36.9 |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O8 | 0.67678 (16) | 0.82688 (15) | 0.88495 (6) | 0.0359 (4) | |
O9 | 0.82540 (16) | 0.67544 (15) | 0.87255 (7) | 0.0365 (4) | |
O12 | 0.87384 (16) | 0.80522 (14) | 0.75789 (7) | 0.0364 (4) | |
O15 | 1.16391 (17) | 0.86069 (15) | 0.74267 (6) | 0.0384 (5) | |
O24 | 0.59475 (19) | 0.71173 (17) | 0.69995 (7) | 0.0437 (5) | |
N10 | 0.6689 (2) | 0.7081 (2) | 0.81003 (8) | 0.0313 (5) | |
H10 | 0.622 (2) | 0.766 (2) | 0.7980 (10) | 0.030 (7)* | |
N13 | 0.9445 (2) | 0.6198 (2) | 0.72662 (8) | 0.0299 (5) | |
H13 | 0.938 (2) | 0.543 (2) | 0.7262 (9) | 0.021 (6)* | |
N16 | 1.1470 (2) | 0.70186 (18) | 0.80182 (8) | 0.0309 (5) | |
C1 | 0.6590 (2) | 0.9446 (2) | 0.96727 (10) | 0.0338 (6) | |
C2 | 0.5847 (3) | 0.9017 (3) | 1.00999 (10) | 0.0404 (7) | |
H2 | 0.5889 | 0.8162 | 1.0202 | 0.048* | |
C3 | 0.5043 (3) | 0.9826 (3) | 1.03795 (11) | 0.0488 (8) | |
H3 | 0.4528 | 0.9519 | 1.0668 | 0.059* | |
C4 | 0.4988 (3) | 1.1064 (3) | 1.02409 (11) | 0.0505 (8) | |
H4 | 0.4433 | 1.1614 | 1.0432 | 0.061* | |
C5 | 0.5737 (3) | 1.1507 (3) | 0.98240 (11) | 0.0537 (8) | |
H5 | 0.5707 | 1.2368 | 0.9731 | 0.064* | |
C6 | 0.6537 (3) | 1.0705 (3) | 0.95382 (11) | 0.0446 (7) | |
H6 | 0.7050 | 1.1019 | 0.9250 | 0.053* | |
C7 | 0.7421 (3) | 0.8568 (3) | 0.93584 (10) | 0.0388 (6) | |
H71 | 0.8262 | 0.8962 | 0.9283 | 0.047* | |
H72 | 0.7571 | 0.7795 | 0.9570 | 0.047* | |
C9 | 0.7325 (2) | 0.7327 (2) | 0.85660 (9) | 0.0303 (6) | |
C11 | 0.7332 (2) | 0.6287 (2) | 0.77056 (9) | 0.0295 (6) | |
H11 | 0.7573 | 0.5486 | 0.7889 | 0.035* | |
C12 | 0.8565 (2) | 0.6927 (2) | 0.75132 (9) | 0.0292 (6) | |
C14 | 1.0656 (2) | 0.6746 (2) | 0.70680 (9) | 0.0300 (6) | |
C15 | 1.1285 (2) | 0.7531 (2) | 0.75198 (9) | 0.0314 (6) | |
C17 | 1.1876 (2) | 0.7846 (2) | 0.84446 (10) | 0.0327 (6) | |
C18 | 1.3131 (3) | 0.7864 (3) | 0.86181 (12) | 0.0521 (8) | |
H18 | 1.3755 | 0.7352 | 0.8446 | 0.062* | |
C19 | 1.3480 (3) | 0.8631 (3) | 0.90438 (13) | 0.0631 (9) | |
H19 | 1.4345 | 0.8638 | 0.9167 | 0.076* | |
C20 | 1.2583 (3) | 0.9385 (3) | 0.92911 (11) | 0.0532 (8) | |
H20 | 1.2833 | 0.9924 | 0.9578 | 0.064* | |
C21 | 1.1327 (3) | 0.9357 (3) | 0.91219 (11) | 0.0443 (7) | |
H21 | 1.0704 | 0.9868 | 0.9295 | 0.053* | |
C22 | 1.0971 (2) | 0.8585 (2) | 0.86985 (10) | 0.0362 (6) | |
H22 | 1.0102 | 0.8562 | 0.8582 | 0.043* | |
C23 | 0.6429 (3) | 0.5978 (2) | 0.72318 (10) | 0.0361 (6) | |
H23 | 0.6926 | 0.5517 | 0.6948 | 0.043* | |
C25 | 0.6469 (3) | 0.7445 (4) | 0.64997 (13) | 0.0678 (10) | |
H251 | 0.6529 | 0.6693 | 0.6268 | 0.081* | |
H252 | 0.7348 | 0.7774 | 0.6554 | 0.081* | |
C26 | 0.5668 (3) | 0.8414 (2) | 0.62200 (10) | 0.0384 (6) | |
C27 | 0.4374 (3) | 0.8555 (2) | 0.63249 (10) | 0.0383 (6) | |
H27 | 0.3974 | 0.8048 | 0.6592 | 0.046* | |
C28 | 0.3661 (3) | 0.9420 (2) | 0.60466 (10) | 0.0420 (7) | |
H28 | 0.2773 | 0.9514 | 0.6125 | 0.050* | |
C29 | 0.4219 (3) | 1.0151 (3) | 0.56554 (11) | 0.0498 (8) | |
H29 | 0.3715 | 1.0737 | 0.5459 | 0.060* | |
C30 | 0.5511 (3) | 1.0035 (3) | 0.55473 (12) | 0.0513 (8) | |
H30 | 0.5901 | 1.0548 | 0.5280 | 0.062* | |
C31 | 0.6238 (3) | 0.9169 (3) | 0.58284 (11) | 0.0467 (7) | |
H31 | 0.7129 | 0.9089 | 0.5754 | 0.056* | |
C32 | 0.5288 (3) | 0.5190 (3) | 0.73979 (12) | 0.0468 (7) | |
H321 | 0.4749 | 0.5026 | 0.7080 | 0.070* | |
H322 | 0.4785 | 0.5639 | 0.7672 | 0.070* | |
H323 | 0.5590 | 0.4396 | 0.7549 | 0.070* | |
C33 | 1.0368 (3) | 0.7583 (2) | 0.65799 (10) | 0.0378 (6) | |
H331 | 0.9812 | 0.8275 | 0.6693 | 0.057* | |
H332 | 0.9934 | 0.7093 | 0.6299 | 0.057* | |
H333 | 1.1174 | 0.7919 | 0.6435 | 0.057* | |
C34 | 1.1582 (3) | 0.5727 (2) | 0.68789 (10) | 0.0370 (6) | |
H341 | 1.1242 | 0.5328 | 0.6551 | 0.055* | |
H342 | 1.1679 | 0.5100 | 0.7165 | 0.055* | |
H343 | 1.2420 | 0.6100 | 0.6799 | 0.055* | |
C35 | 1.1131 (3) | 0.5756 (2) | 0.82034 (10) | 0.0385 (7) | |
H351 | 1.1141 | 0.5181 | 0.7894 | 0.058* | |
H352 | 1.0272 | 0.5769 | 0.8365 | 0.058* | |
H353 | 1.1755 | 0.5477 | 0.8475 | 0.058* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O8 | 0.0367 (10) | 0.0384 (10) | 0.0326 (9) | 0.0074 (9) | −0.0044 (8) | −0.0084 (8) |
O9 | 0.0323 (10) | 0.0370 (9) | 0.0402 (10) | 0.0054 (9) | −0.0042 (8) | −0.0009 (8) |
O12 | 0.0427 (11) | 0.0208 (9) | 0.0456 (10) | 0.0001 (8) | 0.0038 (9) | −0.0020 (7) |
O15 | 0.0498 (11) | 0.0246 (9) | 0.0409 (10) | −0.0088 (9) | 0.0009 (9) | 0.0035 (8) |
O24 | 0.0616 (12) | 0.0380 (10) | 0.0315 (9) | 0.0139 (10) | −0.0008 (9) | 0.0039 (8) |
N10 | 0.0331 (12) | 0.0297 (12) | 0.0310 (12) | 0.0086 (11) | −0.0024 (10) | −0.0016 (9) |
N13 | 0.0354 (12) | 0.0191 (11) | 0.0350 (11) | −0.0014 (10) | 0.0039 (10) | −0.0004 (9) |
N16 | 0.0390 (12) | 0.0237 (10) | 0.0301 (11) | −0.0013 (10) | −0.0014 (9) | 0.0004 (9) |
C1 | 0.0347 (14) | 0.0395 (14) | 0.0272 (12) | −0.0009 (13) | −0.0026 (11) | −0.0031 (11) |
C2 | 0.0433 (16) | 0.0439 (15) | 0.0339 (13) | −0.0085 (14) | −0.0045 (13) | 0.0034 (12) |
C3 | 0.0428 (17) | 0.076 (2) | 0.0281 (14) | −0.0096 (16) | 0.0033 (13) | −0.0048 (15) |
C4 | 0.0516 (18) | 0.066 (2) | 0.0343 (15) | 0.0142 (16) | −0.0021 (14) | −0.0115 (15) |
C5 | 0.080 (2) | 0.0415 (16) | 0.0392 (16) | 0.0096 (17) | −0.0059 (16) | −0.0043 (13) |
C6 | 0.0583 (18) | 0.0428 (16) | 0.0326 (14) | −0.0012 (15) | 0.0112 (14) | 0.0018 (13) |
C7 | 0.0351 (15) | 0.0439 (16) | 0.0374 (14) | 0.0025 (13) | −0.0077 (12) | −0.0087 (12) |
C9 | 0.0306 (14) | 0.0281 (13) | 0.0321 (13) | −0.0010 (12) | 0.0052 (12) | −0.0014 (11) |
C11 | 0.0332 (14) | 0.0244 (12) | 0.0308 (13) | 0.0036 (11) | 0.0006 (11) | −0.0017 (11) |
C12 | 0.0352 (14) | 0.0243 (13) | 0.0281 (13) | 0.0006 (12) | −0.0023 (11) | 0.0011 (10) |
C14 | 0.0341 (14) | 0.0244 (13) | 0.0314 (13) | −0.0029 (12) | 0.0046 (11) | 0.0007 (10) |
C15 | 0.0334 (14) | 0.0254 (14) | 0.0354 (14) | 0.0005 (12) | 0.0029 (11) | −0.0003 (11) |
C17 | 0.0335 (15) | 0.0308 (13) | 0.0337 (13) | −0.0026 (12) | −0.0044 (12) | 0.0034 (11) |
C18 | 0.0388 (17) | 0.069 (2) | 0.0483 (17) | 0.0058 (16) | −0.0035 (14) | −0.0110 (16) |
C19 | 0.0415 (17) | 0.092 (3) | 0.0564 (19) | −0.0057 (19) | −0.0148 (16) | −0.0133 (19) |
C20 | 0.061 (2) | 0.057 (2) | 0.0418 (17) | −0.0159 (17) | −0.0096 (15) | −0.0061 (15) |
C21 | 0.0511 (18) | 0.0394 (15) | 0.0424 (15) | −0.0023 (14) | 0.0008 (14) | −0.0052 (13) |
C22 | 0.0333 (14) | 0.0324 (13) | 0.0428 (15) | −0.0008 (12) | −0.0053 (12) | −0.0029 (12) |
C23 | 0.0419 (15) | 0.0304 (13) | 0.0360 (14) | 0.0045 (12) | −0.0028 (12) | −0.0021 (12) |
C25 | 0.0518 (19) | 0.094 (3) | 0.0580 (19) | 0.025 (2) | 0.0115 (16) | 0.036 (2) |
C26 | 0.0392 (15) | 0.0426 (15) | 0.0333 (13) | 0.0043 (13) | −0.0035 (12) | 0.0020 (12) |
C27 | 0.0420 (15) | 0.0343 (14) | 0.0386 (14) | −0.0001 (13) | 0.0021 (13) | 0.0022 (12) |
C28 | 0.0399 (16) | 0.0422 (15) | 0.0439 (16) | 0.0054 (14) | −0.0018 (13) | −0.0021 (13) |
C29 | 0.065 (2) | 0.0427 (17) | 0.0420 (16) | 0.0134 (16) | 0.0009 (15) | 0.0060 (14) |
C30 | 0.0605 (19) | 0.0497 (18) | 0.0436 (16) | −0.0010 (16) | 0.0071 (15) | 0.0127 (14) |
C31 | 0.0395 (16) | 0.0602 (19) | 0.0404 (15) | −0.0013 (15) | 0.0040 (13) | 0.0012 (15) |
C32 | 0.0403 (16) | 0.0459 (17) | 0.0542 (18) | −0.0031 (14) | −0.0063 (14) | −0.0011 (15) |
C33 | 0.0471 (16) | 0.0315 (14) | 0.0348 (14) | −0.0014 (13) | 0.0040 (12) | 0.0014 (12) |
C34 | 0.0408 (15) | 0.0290 (13) | 0.0410 (14) | −0.0020 (12) | 0.0111 (13) | −0.0024 (12) |
C35 | 0.0482 (16) | 0.0287 (13) | 0.0387 (14) | 0.0009 (13) | 0.0000 (13) | 0.0072 (12) |
Geometric parameters (Å, º) top
O8—C9 | 1.357 (3) | C18—C19 | 1.381 (4) |
O8—C7 | 1.463 (3) | C18—H18 | 0.9500 |
O9—C9 | 1.211 (3) | C19—C20 | 1.377 (4) |
O12—C12 | 1.228 (3) | C19—H19 | 0.9500 |
O15—C15 | 1.230 (3) | C20—C21 | 1.374 (4) |
O24—C25 | 1.392 (3) | C20—H20 | 0.9500 |
O24—C23 | 1.437 (3) | C21—C22 | 1.382 (4) |
N10—C9 | 1.352 (3) | C21—H21 | 0.9500 |
N10—C11 | 1.456 (3) | C22—H22 | 0.9500 |
N10—H10 | 0.84 (3) | C23—C32 | 1.514 (4) |
N13—C12 | 1.349 (3) | C23—H23 | 1.0000 |
N13—C14 | 1.475 (3) | C25—C26 | 1.499 (4) |
N13—H13 | 0.82 (2) | C25—H251 | 0.9900 |
N16—C15 | 1.360 (3) | C25—H252 | 0.9900 |
N16—C17 | 1.438 (3) | C26—C27 | 1.381 (4) |
N16—C35 | 1.469 (3) | C26—C31 | 1.392 (4) |
C1—C2 | 1.385 (4) | C27—C28 | 1.371 (4) |
C1—C6 | 1.389 (4) | C27—H27 | 0.9500 |
C1—C7 | 1.495 (4) | C28—C29 | 1.371 (4) |
C2—C3 | 1.388 (4) | C28—H28 | 0.9500 |
C2—H2 | 0.9500 | C29—C30 | 1.377 (5) |
C3—C4 | 1.369 (4) | C29—H29 | 0.9500 |
C3—H3 | 0.9500 | C30—C31 | 1.383 (4) |
C4—C5 | 1.376 (4) | C30—H30 | 0.9500 |
C4—H4 | 0.9500 | C31—H31 | 0.9500 |
C5—C6 | 1.388 (4) | C32—H321 | 0.9800 |
C5—H5 | 0.9500 | C32—H322 | 0.9800 |
C6—H6 | 0.9500 | C32—H323 | 0.9800 |
C7—H71 | 0.9900 | C33—H331 | 0.9800 |
C7—H72 | 0.9900 | C33—H332 | 0.9800 |
C11—C12 | 1.531 (3) | C33—H333 | 0.9800 |
C11—C23 | 1.536 (3) | C34—H341 | 0.9800 |
C11—H11 | 1.0000 | C34—H342 | 0.9800 |
C14—C34 | 1.529 (3) | C34—H343 | 0.9800 |
C14—C33 | 1.530 (3) | C35—H351 | 0.9800 |
C14—C15 | 1.541 (3) | C35—H352 | 0.9800 |
C17—C18 | 1.376 (4) | C35—H353 | 0.9800 |
C17—C22 | 1.381 (3) | | |
| | | |
C9—O8—C7 | 113.93 (19) | C18—C19—H19 | 119.8 |
C25—O24—C23 | 115.5 (2) | C21—C20—C19 | 120.0 (3) |
C9—N10—C11 | 117.1 (2) | C21—C20—H20 | 120.0 |
C9—N10—H10 | 116.2 (17) | C19—C20—H20 | 120.0 |
C11—N10—H10 | 117.4 (17) | C20—C21—C22 | 119.9 (3) |
C12—N13—C14 | 120.1 (2) | C20—C21—H21 | 120.1 |
C12—N13—H13 | 121.9 (17) | C22—C21—H21 | 120.1 |
C14—N13—H13 | 117.4 (17) | C17—C22—C21 | 120.1 (2) |
C15—N16—C17 | 117.05 (19) | C17—C22—H22 | 119.9 |
C15—N16—C35 | 128.2 (2) | C21—C22—H22 | 119.9 |
C17—N16—C35 | 114.15 (19) | O24—C23—C32 | 107.8 (2) |
C2—C1—C6 | 118.8 (3) | O24—C23—C11 | 109.57 (19) |
C2—C1—C7 | 120.6 (2) | C32—C23—C11 | 113.3 (2) |
C6—C1—C7 | 120.6 (2) | O24—C23—H23 | 108.7 |
C1—C2—C3 | 120.5 (3) | C32—C23—H23 | 108.7 |
C1—C2—H2 | 119.7 | C11—C23—H23 | 108.7 |
C3—C2—H2 | 119.7 | O24—C25—C26 | 111.4 (2) |
C4—C3—C2 | 120.3 (3) | O24—C25—H251 | 109.4 |
C4—C3—H3 | 119.8 | C26—C25—H251 | 109.4 |
C2—C3—H3 | 119.8 | O24—C25—H252 | 109.4 |
C3—C4—C5 | 119.8 (3) | C26—C25—H252 | 109.4 |
C3—C4—H4 | 120.1 | H251—C25—H252 | 108.0 |
C5—C4—H4 | 120.1 | C27—C26—C31 | 118.9 (2) |
C4—C5—C6 | 120.5 (3) | C27—C26—C25 | 122.2 (2) |
C4—C5—H5 | 119.8 | C31—C26—C25 | 118.9 (2) |
C6—C5—H5 | 119.8 | C28—C27—C26 | 120.6 (2) |
C5—C6—C1 | 120.1 (3) | C28—C27—H27 | 119.7 |
C5—C6—H6 | 119.9 | C26—C27—H27 | 119.7 |
C1—C6—H6 | 119.9 | C29—C28—C27 | 120.5 (3) |
O8—C7—C1 | 108.24 (19) | C29—C28—H28 | 119.8 |
O8—C7—H71 | 110.1 | C27—C28—H28 | 119.8 |
C1—C7—H71 | 110.1 | C28—C29—C30 | 120.0 (3) |
O8—C7—H72 | 110.1 | C28—C29—H29 | 120.0 |
C1—C7—H72 | 110.1 | C30—C29—H29 | 120.0 |
H71—C7—H72 | 108.4 | C29—C30—C31 | 119.9 (3) |
O9—C9—N10 | 124.7 (2) | C29—C30—H30 | 120.1 |
O9—C9—O8 | 123.4 (2) | C31—C30—H30 | 120.1 |
N10—C9—O8 | 111.9 (2) | C30—C31—C26 | 120.2 (3) |
N10—C11—C12 | 109.43 (19) | C30—C31—H31 | 119.9 |
N10—C11—C23 | 110.6 (2) | C26—C31—H31 | 119.9 |
C12—C11—C23 | 111.97 (19) | C23—C32—H321 | 109.5 |
N10—C11—H11 | 108.2 | C23—C32—H322 | 109.5 |
C12—C11—H11 | 108.2 | H321—C32—H322 | 109.5 |
C23—C11—H11 | 108.2 | C23—C32—H323 | 109.5 |
O12—C12—N13 | 121.8 (2) | H321—C32—H323 | 109.5 |
O12—C12—C11 | 121.4 (2) | H322—C32—H323 | 109.5 |
N13—C12—C11 | 116.8 (2) | C14—C33—H331 | 109.5 |
N13—C14—C34 | 110.93 (19) | C14—C33—H332 | 109.5 |
N13—C14—C33 | 109.0 (2) | H331—C33—H332 | 109.5 |
C34—C14—C33 | 107.53 (19) | C14—C33—H333 | 109.5 |
N13—C14—C15 | 109.92 (19) | H331—C33—H333 | 109.5 |
C34—C14—C15 | 109.9 (2) | H332—C33—H333 | 109.5 |
C33—C14—C15 | 109.47 (19) | C14—C34—H341 | 109.5 |
O15—C15—N16 | 120.2 (2) | C14—C34—H342 | 109.5 |
O15—C15—C14 | 120.1 (2) | H341—C34—H342 | 109.5 |
N16—C15—C14 | 119.6 (2) | C14—C34—H343 | 109.5 |
C18—C17—C22 | 120.0 (2) | H341—C34—H343 | 109.5 |
C18—C17—N16 | 121.0 (2) | H342—C34—H343 | 109.5 |
C22—C17—N16 | 118.9 (2) | N16—C35—H351 | 109.5 |
C17—C18—C19 | 119.7 (3) | N16—C35—H352 | 109.5 |
C17—C18—H18 | 120.2 | H351—C35—H352 | 109.5 |
C19—C18—H18 | 120.2 | N16—C35—H353 | 109.5 |
C20—C19—C18 | 120.4 (3) | H351—C35—H353 | 109.5 |
C20—C19—H19 | 119.8 | H352—C35—H353 | 109.5 |
| | | |
C6—C1—C2—C3 | 1.5 (4) | N13—C14—C15—N16 | 51.6 (3) |
C7—C1—C2—C3 | −177.8 (2) | C34—C14—C15—N16 | −70.7 (3) |
C1—C2—C3—C4 | −0.9 (4) | C33—C14—C15—N16 | 171.4 (2) |
C2—C3—C4—C5 | −0.3 (4) | C15—N16—C17—C18 | −103.3 (3) |
C3—C4—C5—C6 | 0.8 (4) | C35—N16—C17—C18 | 85.1 (3) |
C4—C5—C6—C1 | −0.2 (4) | C15—N16—C17—C22 | 79.8 (3) |
C2—C1—C6—C5 | −1.0 (4) | C35—N16—C17—C22 | −91.7 (3) |
C7—C1—C6—C5 | 178.3 (2) | C22—C17—C18—C19 | −0.5 (4) |
C9—O8—C7—C1 | −170.0 (2) | N16—C17—C18—C19 | −177.3 (3) |
C2—C1—C7—O8 | 101.3 (3) | C17—C18—C19—C20 | −0.7 (5) |
C6—C1—C7—O8 | −78.0 (3) | C18—C19—C20—C21 | 1.4 (5) |
C11—N10—C9—O9 | −15.3 (3) | C19—C20—C21—C22 | −0.9 (4) |
C11—N10—C9—O8 | 167.11 (19) | C18—C17—C22—C21 | 0.9 (4) |
C7—O8—C9—O9 | 2.2 (3) | N16—C17—C22—C21 | 177.8 (2) |
C7—O8—C9—N10 | 179.8 (2) | C20—C21—C22—C17 | −0.3 (4) |
C9—N10—C11—C12 | −62.6 (3) | C25—O24—C23—C32 | −130.2 (3) |
C9—N10—C11—C23 | 173.6 (2) | C25—O24—C23—C11 | 106.1 (3) |
C14—N13—C12—O12 | 0.2 (3) | N10—C11—C23—O24 | 54.9 (3) |
C14—N13—C12—C11 | 179.82 (19) | C12—C11—C23—O24 | −67.5 (3) |
N10—C11—C12—O12 | −17.9 (3) | N10—C11—C23—C32 | −65.5 (3) |
C23—C11—C12—O12 | 105.1 (3) | C12—C11—C23—C32 | 172.2 (2) |
N10—C11—C12—N13 | 162.4 (2) | C23—O24—C25—C26 | 163.9 (2) |
C23—C11—C12—N13 | −74.5 (3) | O24—C25—C26—C27 | −25.1 (4) |
C12—N13—C14—C34 | 171.7 (2) | O24—C25—C26—C31 | 157.1 (3) |
C12—N13—C14—C33 | −70.0 (3) | C31—C26—C27—C28 | 0.2 (4) |
C12—N13—C14—C15 | 50.0 (3) | C25—C26—C27—C28 | −177.6 (3) |
C17—N16—C15—O15 | 10.6 (4) | C26—C27—C28—C29 | 0.7 (4) |
C35—N16—C15—O15 | −179.2 (2) | C27—C28—C29—C30 | −1.3 (4) |
C17—N16—C15—C14 | −170.7 (2) | C28—C29—C30—C31 | 0.9 (5) |
C35—N16—C15—C14 | −0.5 (4) | C29—C30—C31—C26 | 0.0 (4) |
N13—C14—C15—O15 | −129.7 (2) | C27—C26—C31—C30 | −0.6 (4) |
C34—C14—C15—O15 | 107.9 (3) | C25—C26—C31—C30 | 177.3 (3) |
C33—C14—C15—O15 | −10.0 (3) | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N10—H10···O24 | 0.84 (3) | 2.50 (2) | 2.823 (3) | 104 (2) |
N13—H13···O15i | 0.82 (2) | 2.35 (3) | 3.088 (3) | 149 (2) |
Symmetry code: (i) −x+2, y−1/2, −z+3/2. |
(VI) methyl (4
R)-
N-(benzyloxycarbonyl)valyl-2-methylalanyl-4-(benzyloxy)prolinate
top
Crystal data top
C30H39N3O7 | Z = 1 |
Mr = 553.65 | F(000) = 296 |
Triclinic, P1 | Dx = 1.247 Mg m−3 |
Hall symbol: P 1 | Melting point: 405 K |
a = 6.2705 (1) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 9.7577 (2) Å | Cell parameters from 3287 reflections |
c = 13.2491 (3) Å | θ = 2.0–27.5° |
α = 106.6479 (13)° | µ = 0.09 mm−1 |
β = 94.2733 (10)° | T = 160 K |
γ = 105.7257 (12)° | Prism, colourless |
V = 737.36 (3) Å3 | 0.33 × 0.25 × 0.15 mm |
Data collection top
Nonius KappaCCD area-detector diffractometer | 3096 reflections with I > 2σ(I) |
Radiation source: Nonius FR590 sealed tube generator | Rint = 0.041 |
Horizontally mounted graphite crystal monochromator | θmax = 27.5°, θmin = 2.4° |
Detector resolution: 9 pixels mm-1 | h = 0→8 |
ϕ and ω scans with κ offsets | k = −12→12 |
17488 measured reflections | l = −17→16 |
3359 independent reflections | |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: geom & difmap |
R[F2 > 2σ(F2)] = 0.036 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.085 | w = 1/[σ2(Fo2) + (0.0367P)2 + 0.1302P] where P = (Fo2 + 2Fc2)/3 |
S = 1.07 | (Δ/σ)max = 0.001 |
3359 reflections | Δρmax = 0.15 e Å−3 |
375 parameters | Δρmin = −0.16 e Å−3 |
3 restraints | Extinction correction: SHELXL97 (Sheldrick, 1997), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.090 (9) |
Crystal data top
C30H39N3O7 | γ = 105.7257 (12)° |
Mr = 553.65 | V = 737.36 (3) Å3 |
Triclinic, P1 | Z = 1 |
a = 6.2705 (1) Å | Mo Kα radiation |
b = 9.7577 (2) Å | µ = 0.09 mm−1 |
c = 13.2491 (3) Å | T = 160 K |
α = 106.6479 (13)° | 0.33 × 0.25 × 0.15 mm |
β = 94.2733 (10)° | |
Data collection top
Nonius KappaCCD area-detector diffractometer | 3096 reflections with I > 2σ(I) |
17488 measured reflections | Rint = 0.041 |
3359 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.036 | 3 restraints |
wR(F2) = 0.085 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.07 | Δρmax = 0.15 e Å−3 |
3359 reflections | Δρmin = −0.16 e Å−3 |
375 parameters | |
Special details top
Experimental. Solvent used: MeOH / hexane / ethyl acetate Cooling Device: Oxford Cryosystems Cryostream 700 Crystal mount: glued on a glass fibre Mosaicity (°.): 0.520 (1) Frames collected: 665 Seconds exposure per frame: 15 Degrees rotation per frame: 1.0 Crystal-Detector distance (mm): 30.0 |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O8 | 0.6029 (3) | 0.01347 (18) | 0.72453 (13) | 0.0367 (4) | |
O9 | 0.8323 (3) | 0.20356 (18) | 0.68077 (14) | 0.0404 (4) | |
O12 | 0.3181 (2) | 0.08475 (17) | 0.45076 (13) | 0.0316 (4) | |
O15 | 0.1107 (2) | 0.35873 (17) | 0.40511 (11) | 0.0264 (3) | |
O18 | 0.3253 (3) | 0.69548 (18) | 0.55051 (14) | 0.0404 (4) | |
O19 | 0.0282 (3) | 0.68588 (18) | 0.63548 (15) | 0.0381 (4) | |
O26 | 0.5756 (2) | 0.50285 (18) | 0.83369 (11) | 0.0298 (3) | |
N10 | 0.6265 (3) | −0.0152 (2) | 0.55360 (15) | 0.0290 (4) | |
H10 | 0.514 (5) | −0.100 (3) | 0.543 (2) | 0.036 (7)* | |
N13 | 0.6146 (3) | 0.25728 (19) | 0.42662 (14) | 0.0226 (4) | |
H13 | 0.759 (4) | 0.281 (3) | 0.4188 (19) | 0.021 (6)* | |
N16 | 0.3376 (3) | 0.42052 (19) | 0.56014 (13) | 0.0217 (4) | |
C1 | 0.5127 (5) | 0.0380 (3) | 0.89971 (19) | 0.0411 (6) | |
C2 | 0.5358 (5) | −0.0829 (3) | 0.9290 (2) | 0.0505 (7) | |
H2 | 0.6520 | −0.1245 | 0.9072 | 0.061* | |
C3 | 0.3924 (7) | −0.1437 (3) | 0.9895 (3) | 0.0630 (9) | |
H3 | 0.4105 | −0.2266 | 1.0092 | 0.076* | |
C4 | 0.2235 (6) | −0.0855 (4) | 1.0214 (2) | 0.0646 (10) | |
H4 | 0.1245 | −0.1282 | 1.0629 | 0.078* | |
C5 | 0.1979 (6) | 0.0340 (4) | 0.9935 (3) | 0.0664 (9) | |
H5 | 0.0816 | 0.0750 | 1.0160 | 0.080* | |
C6 | 0.3415 (6) | 0.0959 (4) | 0.9324 (2) | 0.0533 (7) | |
H6 | 0.3221 | 0.1786 | 0.9128 | 0.064* | |
C7 | 0.6666 (6) | 0.1081 (4) | 0.8353 (2) | 0.0603 (9) | |
H71 | 0.6556 | 0.2095 | 0.8418 | 0.072* | |
H72 | 0.8239 | 0.1183 | 0.8617 | 0.072* | |
C9 | 0.6987 (4) | 0.0785 (2) | 0.65437 (18) | 0.0299 (5) | |
C11 | 0.6791 (4) | 0.0402 (2) | 0.46491 (17) | 0.0257 (4) | |
H11 | 0.8360 | 0.1104 | 0.4844 | 0.031* | |
C12 | 0.5192 (3) | 0.1280 (2) | 0.44646 (16) | 0.0240 (4) | |
C14 | 0.4796 (3) | 0.3381 (2) | 0.38722 (16) | 0.0232 (4) | |
C15 | 0.2934 (3) | 0.3663 (2) | 0.45236 (16) | 0.0207 (4) | |
C17 | 0.1785 (3) | 0.4866 (2) | 0.61538 (16) | 0.0217 (4) | |
H17 | 0.0225 | 0.4152 | 0.5918 | 0.026* | |
C18 | 0.1897 (4) | 0.6336 (2) | 0.59441 (17) | 0.0260 (4) | |
C19 | 0.0239 (5) | 0.8304 (3) | 0.6265 (3) | 0.0516 (7) | |
H191 | 0.1553 | 0.9098 | 0.6726 | 0.077* | |
H192 | −0.1134 | 0.8504 | 0.6486 | 0.077* | |
H193 | 0.0268 | 0.8283 | 0.5522 | 0.077* | |
C20 | 0.6665 (4) | −0.0905 (2) | 0.36341 (18) | 0.0323 (5) | |
H20 | 0.7594 | −0.1499 | 0.3840 | 0.039* | |
C21 | 0.4316 (4) | −0.1981 (3) | 0.3176 (2) | 0.0399 (6) | |
H211 | 0.3366 | −0.1449 | 0.2935 | 0.060* | |
H212 | 0.3679 | −0.2373 | 0.3727 | 0.060* | |
H213 | 0.4387 | −0.2816 | 0.2570 | 0.060* | |
C22 | 0.7722 (5) | −0.0307 (3) | 0.2782 (2) | 0.0447 (6) | |
H221 | 0.7835 | −0.1147 | 0.2192 | 0.067* | |
H222 | 0.9226 | 0.0398 | 0.3095 | 0.067* | |
H223 | 0.6784 | 0.0211 | 0.2514 | 0.067* | |
C23 | 0.3782 (4) | 0.2522 (3) | 0.27015 (17) | 0.0311 (5) | |
H231 | 0.4991 | 0.2445 | 0.2281 | 0.047* | |
H232 | 0.2874 | 0.3057 | 0.2434 | 0.047* | |
H233 | 0.2831 | 0.1512 | 0.2638 | 0.047* | |
C24 | 0.6377 (4) | 0.4953 (2) | 0.39816 (18) | 0.0286 (5) | |
H241 | 0.6957 | 0.5512 | 0.4739 | 0.043* | |
H242 | 0.5544 | 0.5497 | 0.3676 | 0.043* | |
H243 | 0.7633 | 0.4846 | 0.3600 | 0.043* | |
C25 | 0.5262 (3) | 0.4245 (3) | 0.63516 (16) | 0.0257 (4) | |
H251 | 0.6716 | 0.4614 | 0.6122 | 0.031* | |
H252 | 0.5103 | 0.3238 | 0.6417 | 0.031* | |
C26 | 0.5077 (3) | 0.5345 (2) | 0.74051 (16) | 0.0247 (4) | |
H26 | 0.5913 | 0.6399 | 0.7457 | 0.030* | |
C27 | 0.2584 (3) | 0.5135 (2) | 0.73279 (16) | 0.0258 (4) | |
H271 | 0.2298 | 0.6043 | 0.7786 | 0.031* | |
H272 | 0.1815 | 0.4262 | 0.7546 | 0.031* | |
C28 | 0.8116 (3) | 0.5319 (3) | 0.85671 (17) | 0.0290 (5) | |
H281 | 0.8904 | 0.6358 | 0.8591 | 0.035* | |
H282 | 0.8605 | 0.4617 | 0.8001 | 0.035* | |
C29 | 0.8692 (4) | 0.5121 (2) | 0.96309 (16) | 0.0272 (4) | |
C30 | 1.0503 (4) | 0.4624 (3) | 0.98270 (18) | 0.0322 (5) | |
H30 | 1.1388 | 0.4412 | 0.9285 | 0.039* | |
C31 | 1.1047 (4) | 0.4430 (3) | 1.07985 (19) | 0.0350 (5) | |
H31 | 1.2296 | 0.4088 | 1.0917 | 0.042* | |
C32 | 0.9785 (4) | 0.4730 (3) | 1.1591 (2) | 0.0418 (6) | |
H32 | 1.0143 | 0.4589 | 1.2256 | 0.050* | |
C33 | 0.7987 (5) | 0.5242 (4) | 1.1409 (2) | 0.0523 (8) | |
H33 | 0.7120 | 0.5466 | 1.1957 | 0.063* | |
C34 | 0.7433 (5) | 0.5430 (3) | 1.0434 (2) | 0.0422 (6) | |
H34 | 0.6185 | 0.5773 | 1.0317 | 0.051* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O8 | 0.0439 (9) | 0.0333 (8) | 0.0280 (8) | 0.0040 (7) | 0.0031 (7) | 0.0106 (7) |
O9 | 0.0416 (10) | 0.0329 (9) | 0.0364 (9) | −0.0008 (7) | 0.0034 (7) | 0.0079 (7) |
O12 | 0.0249 (8) | 0.0275 (8) | 0.0454 (9) | 0.0075 (6) | 0.0085 (6) | 0.0159 (7) |
O15 | 0.0210 (7) | 0.0333 (8) | 0.0254 (7) | 0.0099 (6) | 0.0014 (6) | 0.0091 (6) |
O18 | 0.0521 (11) | 0.0252 (8) | 0.0461 (10) | 0.0097 (7) | 0.0187 (8) | 0.0142 (7) |
O19 | 0.0315 (9) | 0.0324 (9) | 0.0552 (11) | 0.0189 (7) | 0.0059 (7) | 0.0128 (8) |
O26 | 0.0217 (7) | 0.0474 (9) | 0.0229 (7) | 0.0108 (6) | 0.0042 (6) | 0.0149 (7) |
N10 | 0.0349 (10) | 0.0232 (9) | 0.0296 (9) | 0.0077 (8) | 0.0017 (8) | 0.0114 (7) |
N13 | 0.0194 (9) | 0.0255 (8) | 0.0264 (9) | 0.0084 (7) | 0.0062 (7) | 0.0114 (7) |
N16 | 0.0184 (8) | 0.0269 (8) | 0.0226 (8) | 0.0100 (7) | 0.0046 (6) | 0.0092 (7) |
C1 | 0.0483 (15) | 0.0376 (13) | 0.0257 (11) | 0.0012 (11) | 0.0020 (10) | 0.0048 (10) |
C2 | 0.0606 (18) | 0.0385 (14) | 0.0438 (15) | 0.0110 (12) | 0.0040 (13) | 0.0052 (11) |
C3 | 0.089 (3) | 0.0398 (16) | 0.0464 (17) | −0.0012 (16) | −0.0015 (17) | 0.0165 (13) |
C4 | 0.071 (2) | 0.060 (2) | 0.0362 (15) | −0.0131 (17) | 0.0114 (14) | 0.0056 (14) |
C5 | 0.0515 (19) | 0.077 (2) | 0.0516 (18) | 0.0088 (17) | 0.0104 (14) | 0.0006 (17) |
C6 | 0.0629 (19) | 0.0470 (16) | 0.0471 (16) | 0.0161 (14) | 0.0007 (14) | 0.0134 (13) |
C7 | 0.0666 (19) | 0.0590 (18) | 0.0292 (13) | −0.0134 (15) | 0.0024 (12) | 0.0068 (12) |
C9 | 0.0314 (11) | 0.0289 (11) | 0.0327 (12) | 0.0127 (9) | 0.0044 (9) | 0.0116 (9) |
C11 | 0.0277 (10) | 0.0229 (10) | 0.0280 (11) | 0.0089 (8) | 0.0032 (8) | 0.0095 (8) |
C12 | 0.0238 (10) | 0.0229 (10) | 0.0253 (10) | 0.0068 (8) | 0.0051 (8) | 0.0079 (8) |
C14 | 0.0237 (10) | 0.0281 (10) | 0.0224 (9) | 0.0114 (8) | 0.0051 (8) | 0.0114 (8) |
C15 | 0.0199 (9) | 0.0198 (9) | 0.0244 (10) | 0.0064 (7) | 0.0037 (7) | 0.0098 (7) |
C17 | 0.0181 (9) | 0.0247 (10) | 0.0237 (10) | 0.0086 (8) | 0.0053 (7) | 0.0075 (8) |
C18 | 0.0263 (10) | 0.0235 (10) | 0.0265 (10) | 0.0087 (8) | 0.0019 (8) | 0.0053 (8) |
C19 | 0.0493 (16) | 0.0324 (13) | 0.076 (2) | 0.0245 (12) | 0.0016 (14) | 0.0130 (13) |
C20 | 0.0377 (12) | 0.0267 (11) | 0.0340 (12) | 0.0147 (9) | 0.0044 (10) | 0.0077 (9) |
C21 | 0.0470 (15) | 0.0299 (12) | 0.0382 (13) | 0.0091 (10) | 0.0053 (11) | 0.0067 (10) |
C22 | 0.0527 (16) | 0.0390 (14) | 0.0377 (14) | 0.0113 (12) | 0.0170 (12) | 0.0053 (11) |
C23 | 0.0315 (12) | 0.0426 (13) | 0.0226 (10) | 0.0169 (10) | 0.0041 (8) | 0.0103 (9) |
C24 | 0.0283 (11) | 0.0311 (11) | 0.0338 (11) | 0.0115 (9) | 0.0111 (9) | 0.0179 (9) |
C25 | 0.0220 (10) | 0.0364 (11) | 0.0219 (10) | 0.0125 (8) | 0.0037 (8) | 0.0105 (8) |
C26 | 0.0214 (10) | 0.0327 (11) | 0.0213 (9) | 0.0082 (8) | 0.0036 (7) | 0.0103 (8) |
C27 | 0.0215 (10) | 0.0341 (11) | 0.0236 (10) | 0.0105 (8) | 0.0065 (8) | 0.0096 (8) |
C28 | 0.0223 (10) | 0.0421 (12) | 0.0237 (10) | 0.0102 (9) | 0.0042 (8) | 0.0114 (9) |
C29 | 0.0247 (10) | 0.0323 (11) | 0.0230 (10) | 0.0061 (8) | 0.0015 (8) | 0.0096 (8) |
C30 | 0.0291 (11) | 0.0447 (13) | 0.0261 (11) | 0.0148 (10) | 0.0069 (9) | 0.0123 (9) |
C31 | 0.0302 (12) | 0.0463 (14) | 0.0333 (12) | 0.0154 (10) | 0.0040 (9) | 0.0166 (10) |
C32 | 0.0443 (15) | 0.0616 (17) | 0.0292 (12) | 0.0224 (13) | 0.0082 (11) | 0.0227 (12) |
C33 | 0.0558 (17) | 0.091 (2) | 0.0341 (14) | 0.0455 (17) | 0.0209 (12) | 0.0308 (14) |
C34 | 0.0436 (14) | 0.0664 (17) | 0.0324 (12) | 0.0326 (13) | 0.0148 (11) | 0.0226 (12) |
Geometric parameters (Å, º) top
O8—C9 | 1.357 (3) | C17—H17 | 1.0000 |
O8—C7 | 1.450 (3) | C19—H191 | 0.9800 |
O9—C9 | 1.213 (3) | C19—H192 | 0.9800 |
O12—C12 | 1.227 (3) | C19—H193 | 0.9800 |
O15—C15 | 1.237 (2) | C20—C21 | 1.518 (3) |
O18—C18 | 1.193 (3) | C20—C22 | 1.527 (3) |
O19—C18 | 1.336 (3) | C20—H20 | 1.0000 |
O19—C19 | 1.456 (3) | C21—H211 | 0.9800 |
O26—C26 | 1.418 (2) | C21—H212 | 0.9800 |
O26—C28 | 1.421 (3) | C21—H213 | 0.9800 |
N10—C9 | 1.345 (3) | C22—H221 | 0.9800 |
N10—C11 | 1.451 (3) | C22—H222 | 0.9800 |
N10—H10 | 0.90 (3) | C22—H223 | 0.9800 |
N13—C12 | 1.350 (3) | C23—H231 | 0.9800 |
N13—C14 | 1.464 (3) | C23—H232 | 0.9800 |
N13—H13 | 0.89 (2) | C23—H233 | 0.9800 |
N16—C15 | 1.351 (2) | C24—H241 | 0.9800 |
N16—C17 | 1.461 (2) | C24—H242 | 0.9800 |
N16—C25 | 1.471 (3) | C24—H243 | 0.9800 |
C1—C2 | 1.383 (4) | C25—C26 | 1.532 (3) |
C1—C6 | 1.385 (4) | C25—H251 | 0.9900 |
C1—C7 | 1.493 (4) | C25—H252 | 0.9900 |
C2—C3 | 1.376 (5) | C26—C27 | 1.512 (3) |
C2—H2 | 0.9500 | C26—H26 | 1.0000 |
C3—C4 | 1.370 (5) | C27—H271 | 0.9900 |
C3—H3 | 0.9500 | C27—H272 | 0.9900 |
C4—C5 | 1.365 (6) | C28—C29 | 1.508 (3) |
C4—H4 | 0.9500 | C28—H281 | 0.9900 |
C5—C6 | 1.387 (5) | C28—H282 | 0.9900 |
C5—H5 | 0.9500 | C29—C34 | 1.384 (3) |
C6—H6 | 0.9500 | C29—C30 | 1.385 (3) |
C7—H71 | 0.9900 | C30—C31 | 1.385 (3) |
C7—H72 | 0.9900 | C30—H30 | 0.9500 |
C11—C12 | 1.533 (3) | C31—C32 | 1.374 (3) |
C11—C20 | 1.545 (3) | C31—H31 | 0.9500 |
C11—H11 | 1.0000 | C32—C33 | 1.383 (4) |
C14—C23 | 1.527 (3) | C32—H32 | 0.9500 |
C14—C15 | 1.540 (3) | C33—C34 | 1.389 (4) |
C14—C24 | 1.543 (3) | C33—H33 | 0.9500 |
C17—C18 | 1.522 (3) | C34—H34 | 0.9500 |
C17—C27 | 1.523 (3) | | |
| | | |
C9—O8—C7 | 114.49 (19) | C21—C20—C22 | 110.6 (2) |
C18—O19—C19 | 116.3 (2) | C21—C20—C11 | 114.25 (19) |
C26—O26—C28 | 113.10 (15) | C22—C20—C11 | 110.76 (18) |
C9—N10—C11 | 119.64 (18) | C21—C20—H20 | 107.0 |
C9—N10—H10 | 117.2 (17) | C22—C20—H20 | 107.0 |
C11—N10—H10 | 120.5 (17) | C11—C20—H20 | 107.0 |
C12—N13—C14 | 121.82 (17) | C20—C21—H211 | 109.5 |
C12—N13—H13 | 119.4 (15) | C20—C21—H212 | 109.5 |
C14—N13—H13 | 116.5 (15) | H211—C21—H212 | 109.5 |
C15—N16—C17 | 117.81 (15) | C20—C21—H213 | 109.5 |
C15—N16—C25 | 130.18 (16) | H211—C21—H213 | 109.5 |
C17—N16—C25 | 112.01 (15) | H212—C21—H213 | 109.5 |
C2—C1—C6 | 118.4 (3) | C20—C22—H221 | 109.5 |
C2—C1—C7 | 122.2 (3) | C20—C22—H222 | 109.5 |
C6—C1—C7 | 119.4 (3) | H221—C22—H222 | 109.5 |
C3—C2—C1 | 120.7 (3) | C20—C22—H223 | 109.5 |
C3—C2—H2 | 119.7 | H221—C22—H223 | 109.5 |
C1—C2—H2 | 119.7 | H222—C22—H223 | 109.5 |
C4—C3—C2 | 120.4 (3) | C14—C23—H231 | 109.5 |
C4—C3—H3 | 119.8 | C14—C23—H232 | 109.5 |
C2—C3—H3 | 119.8 | H231—C23—H232 | 109.5 |
C5—C4—C3 | 119.8 (3) | C14—C23—H233 | 109.5 |
C5—C4—H4 | 120.1 | H231—C23—H233 | 109.5 |
C3—C4—H4 | 120.1 | H232—C23—H233 | 109.5 |
C4—C5—C6 | 120.1 (3) | C14—C24—H241 | 109.5 |
C4—C5—H5 | 119.9 | C14—C24—H242 | 109.5 |
C6—C5—H5 | 119.9 | H241—C24—H242 | 109.5 |
C1—C6—C5 | 120.5 (3) | C14—C24—H243 | 109.5 |
C1—C6—H6 | 119.7 | H241—C24—H243 | 109.5 |
C5—C6—H6 | 119.7 | H242—C24—H243 | 109.5 |
O8—C7—C1 | 108.7 (2) | N16—C25—C26 | 103.19 (16) |
O8—C7—H71 | 110.0 | N16—C25—H251 | 111.1 |
C1—C7—H71 | 110.0 | C26—C25—H251 | 111.1 |
O8—C7—H72 | 110.0 | N16—C25—H252 | 111.1 |
C1—C7—H72 | 110.0 | C26—C25—H252 | 111.1 |
H71—C7—H72 | 108.3 | H251—C25—H252 | 109.1 |
O9—C9—N10 | 125.7 (2) | O26—C26—C27 | 106.96 (16) |
O9—C9—O8 | 123.7 (2) | O26—C26—C25 | 115.04 (17) |
N10—C9—O8 | 110.64 (19) | C27—C26—C25 | 103.52 (16) |
N10—C11—C12 | 109.27 (17) | O26—C26—H26 | 110.3 |
N10—C11—C20 | 110.81 (17) | C27—C26—H26 | 110.3 |
C12—C11—C20 | 111.64 (17) | C25—C26—H26 | 110.3 |
N10—C11—H11 | 108.3 | C26—C27—C17 | 104.44 (16) |
C12—C11—H11 | 108.3 | C26—C27—H271 | 110.9 |
C20—C11—H11 | 108.3 | C17—C27—H271 | 110.9 |
O12—C12—N13 | 122.15 (19) | C26—C27—H272 | 110.9 |
O12—C12—C11 | 122.28 (18) | C17—C27—H272 | 110.9 |
N13—C12—C11 | 115.57 (17) | H271—C27—H272 | 108.9 |
N13—C14—C23 | 109.11 (16) | O26—C28—C29 | 109.00 (17) |
N13—C14—C15 | 114.15 (16) | O26—C28—H281 | 109.9 |
C23—C14—C15 | 110.13 (17) | C29—C28—H281 | 109.9 |
N13—C14—C24 | 107.50 (17) | O26—C28—H282 | 109.9 |
C23—C14—C24 | 110.20 (18) | C29—C28—H282 | 109.9 |
C15—C14—C24 | 105.64 (16) | H281—C28—H282 | 108.3 |
O15—C15—N16 | 119.42 (17) | C34—C29—C30 | 118.4 (2) |
O15—C15—C14 | 119.07 (17) | C34—C29—C28 | 121.1 (2) |
N16—C15—C14 | 120.77 (16) | C30—C29—C28 | 120.53 (19) |
N16—C17—C18 | 109.82 (16) | C31—C30—C29 | 121.2 (2) |
N16—C17—C27 | 103.95 (15) | C31—C30—H30 | 119.4 |
C18—C17—C27 | 111.17 (17) | C29—C30—H30 | 119.4 |
N16—C17—H17 | 110.6 | C32—C31—C30 | 120.2 (2) |
C18—C17—H17 | 110.6 | C32—C31—H31 | 119.9 |
C27—C17—H17 | 110.6 | C30—C31—H31 | 119.9 |
O18—C18—O19 | 124.8 (2) | C31—C32—C33 | 119.2 (2) |
O18—C18—C17 | 125.43 (19) | C31—C32—H32 | 120.4 |
O19—C18—C17 | 109.72 (17) | C33—C32—H32 | 120.4 |
O19—C19—H191 | 109.5 | C32—C33—C34 | 120.7 (2) |
O19—C19—H192 | 109.5 | C32—C33—H33 | 119.6 |
H191—C19—H192 | 109.5 | C34—C33—H33 | 119.6 |
O19—C19—H193 | 109.5 | C29—C34—C33 | 120.3 (2) |
H191—C19—H193 | 109.5 | C29—C34—H34 | 119.8 |
H192—C19—H193 | 109.5 | C33—C34—H34 | 119.8 |
| | | |
C6—C1—C2—C3 | −0.2 (4) | C15—N16—C17—C18 | −69.2 (2) |
C7—C1—C2—C3 | 179.3 (3) | C25—N16—C17—C18 | 110.97 (18) |
C1—C2—C3—C4 | 0.2 (4) | C15—N16—C17—C27 | 171.81 (17) |
C2—C3—C4—C5 | −0.3 (5) | C25—N16—C17—C27 | −8.0 (2) |
C3—C4—C5—C6 | 0.4 (5) | C19—O19—C18—O18 | −1.1 (3) |
C2—C1—C6—C5 | 0.3 (4) | C19—O19—C18—C17 | 177.1 (2) |
C7—C1—C6—C5 | −179.1 (3) | N16—C17—C18—O18 | −8.3 (3) |
C4—C5—C6—C1 | −0.5 (5) | C27—C17—C18—O18 | 106.2 (2) |
C9—O8—C7—C1 | 167.3 (2) | N16—C17—C18—O19 | 173.53 (16) |
C2—C1—C7—O8 | 77.5 (4) | C27—C17—C18—O19 | −72.0 (2) |
C6—C1—C7—O8 | −103.0 (3) | N10—C11—C20—C21 | 67.3 (2) |
C11—N10—C9—O9 | −10.6 (3) | C12—C11—C20—C21 | −54.8 (3) |
C11—N10—C9—O8 | 170.08 (18) | N10—C11—C20—C22 | −167.1 (2) |
C7—O8—C9—O9 | 2.2 (4) | C12—C11—C20—C22 | 70.9 (2) |
C7—O8—C9—N10 | −178.5 (2) | C15—N16—C25—C26 | 165.96 (19) |
C9—N10—C11—C12 | −78.8 (2) | C17—N16—C25—C26 | −14.2 (2) |
C9—N10—C11—C20 | 157.74 (19) | C28—O26—C26—C27 | −174.39 (18) |
C14—N13—C12—O12 | −13.0 (3) | C28—O26—C26—C25 | 71.3 (2) |
C14—N13—C12—C11 | 167.92 (17) | N16—C25—C26—O26 | 147.06 (16) |
N10—C11—C12—O12 | −41.5 (3) | N16—C25—C26—C27 | 30.7 (2) |
C20—C11—C12—O12 | 81.4 (3) | O26—C26—C27—C17 | −158.15 (16) |
N10—C11—C12—N13 | 137.62 (18) | C25—C26—C27—C17 | −36.3 (2) |
C20—C11—C12—N13 | −99.5 (2) | N16—C17—C27—C26 | 27.4 (2) |
C12—N13—C14—C23 | −73.2 (2) | C18—C17—C27—C26 | −90.6 (2) |
C12—N13—C14—C15 | 50.5 (2) | C26—O26—C28—C29 | 173.58 (18) |
C12—N13—C14—C24 | 167.33 (18) | O26—C28—C29—C34 | −31.3 (3) |
C17—N16—C15—O15 | −8.1 (3) | O26—C28—C29—C30 | 148.7 (2) |
C25—N16—C15—O15 | 171.74 (19) | C34—C29—C30—C31 | 0.4 (4) |
C17—N16—C15—C14 | 161.98 (17) | C28—C29—C30—C31 | −179.7 (2) |
C25—N16—C15—C14 | −18.2 (3) | C29—C30—C31—C32 | 0.0 (4) |
N13—C14—C15—O15 | −142.91 (18) | C30—C31—C32—C33 | −0.6 (4) |
C23—C14—C15—O15 | −19.8 (3) | C31—C32—C33—C34 | 0.9 (5) |
C24—C14—C15—O15 | 99.2 (2) | C30—C29—C34—C33 | −0.1 (4) |
N13—C14—C15—N16 | 47.0 (2) | C28—C29—C34—C33 | −180.0 (3) |
C23—C14—C15—N16 | 170.14 (18) | C32—C33—C34—C29 | −0.6 (5) |
C24—C14—C15—N16 | −70.9 (2) | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N10—H10···O18i | 0.90 (3) | 2.06 (3) | 2.927 (3) | 163 (2) |
N13—H13···O15ii | 0.89 (2) | 2.17 (3) | 3.060 (2) | 175 (2) |
Symmetry codes: (i) x, y−1, z; (ii) x+1, y, z. |
Experimental details
| (III) | (VI) |
Crystal data |
Chemical formula | C30H35N3O5 | C30H39N3O7 |
Mr | 517.62 | 553.65 |
Crystal system, space group | Orthorhombic, P212121 | Triclinic, P1 |
Temperature (K) | 160 | 160 |
a, b, c (Å) | 10.4178 (2), 10.6996 (2), 24.6636 (5) | 6.2705 (1), 9.7577 (2), 13.2491 (3) |
α, β, γ (°) | 90, 90, 90 | 106.6479 (13), 94.2733 (10), 105.7257 (12) |
V (Å3) | 2749.16 (9) | 737.36 (3) |
Z | 4 | 1 |
Radiation type | Mo Kα | Mo Kα |
µ (mm−1) | 0.09 | 0.09 |
Crystal size (mm) | 0.22 × 0.10 × 0.05 | 0.33 × 0.25 × 0.15 |
|
Data collection |
Diffractometer | Nonius KappaCCD area-detector diffractometer | Nonius KappaCCD area-detector diffractometer |
Absorption correction | – | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 30620, 2759, 2388 | 17488, 3359, 3096 |
Rint | 0.058 | 0.041 |
(sin θ/λ)max (Å−1) | 0.595 | 0.649 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.037, 0.090, 1.07 | 0.036, 0.085, 1.07 |
No. of reflections | 2757 | 3359 |
No. of parameters | 356 | 375 |
No. of restraints | 0 | 3 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.17, −0.15 | 0.15, −0.16 |
Hydrogen-bond geometry (Å, º) for (III) top
D—H···A | D—H | H···A | D···A | D—H···A |
N10—H10···O24 | 0.84 (3) | 2.50 (2) | 2.823 (3) | 104 (2) |
N13—H13···O15i | 0.82 (2) | 2.35 (3) | 3.088 (3) | 149 (2) |
Symmetry code: (i) −x+2, y−1/2, −z+3/2. |
Hydrogen-bond geometry (Å, º) for (VI) top
D—H···A | D—H | H···A | D···A | D—H···A |
N10—H10···O18i | 0.90 (3) | 2.06 (3) | 2.927 (3) | 163 (2) |
N13—H13···O15ii | 0.89 (2) | 2.17 (3) | 3.060 (2) | 175 (2) |
Symmetry codes: (i) x, y−1, z; (ii) x+1, y, z. |
A comparison of selected peptide backbone torsion angles (°) topTorsion angle | Compound (III) | Compound (VI) | Z-Val-Aib-Pro-OHa |
O8—C9—N10—C11 | 167.11 (19) | 170.08 (18) | 178.4 (4) |
C9—N10—C11—C12 | -62.6 (3) | -78.8 (2) | -89.7 (5) |
N10—C11—C12—N13 | 162.4 (2) | 137.62 (18) | 164.4 (4) |
C11—C12—N13—C14 | 179.82 (19) | 167.92 (17) | 177.2 (4) |
C12—N13—C14—C15 | 50.0 (3) | 50.5 (2) | 52.3 (6) |
N13—C14—C15—N16 | 51.6 (3) | 47.0 (2) | 35.8 (6) |
C14—C15—N16—C17 | -170.7 (2) | 161.98 (17) | 172.7 (4) |
C15—N16—C17—C18 | -103.3 (3) | -69.2 (2) | -78.5 (5) |
N16—C17—C18—O19 | | 173.53 (16) | 172.3 (4) |
(a) Pradeille et al. (2005) |
In recent years, 2H-azirin-3-amines have been shown to be useful synthons for 2,2-disubstituted glycines, such as 2-aminoisobutyric acid (Aib, 2-methylalanin), in peptide synthesis (Wipf & Heimgartner, 1990; Heimgartner, 1991). Furthermore, methyl (2H-azirin-3-yl)prolinates have proved to be convenient dipeptide synthons (Luykx et al., 1996; Breitenmoser et al., 2001). This novel method, the `azirine/oxazolone method', for the introduction of sterically hindered α,α-disubstituted α-amino acids into peptides, is especially suitable for the preparation of peptaibols, which are amphiphilic membrane-active peptide antibiotics (Benedetti et al., 1982) containing up to 50% of the non-protein amino acid Aib. These metabolites of some fungi have antibacterial properties because of their ability to self-associate in lipid membranes to form ion channels (Latorre & Alvarez, 1981; Chugh et al., 2002; Duclohier et al., 2003). A condition for this ability is a helical conformation of the molecule, which is induced and stabilized by the presence of Aib (Karle et al., 1989; Toniolo et al., 1993; Di Blasio et al., 1993). The helical structure of some peptaibols has been established by X-ray crystallography; for example, for zervamicin IIB (Karle et al., 1991, 1994; Karle, 1996) and antiamoebin (Karle et al., 1998). The data for more than 300 peptaibols or segments of peptaibols, including crystal structures, are now available from the online peptaibol database maintained by Chugh and Wallace in London (Whitmore & Wallace, 2004; https://www.cryst.bbk.ac.uk/peptaibol).
Recently, the `azirine/oxazolone method' has been used for the synthesis of peptaibols or segments thereof, for example, alamethicin F30 (Wipf & Heimgartner, 1990), trichotoxin A-50(G) (Altherr & Heimgartner, 1991; Altherr, 1994), antiamoebin (Altherr & Heimgartner, 1993), tichovirin I 1B (Luykx et al., 1996, 2003), hypomurocin A1 (Pradeille et al., 2005) and zervamicin II-2 (Pradeille & Heimgartner, 2003). In the last-mentioned paper, the 6–16 segment was prepared by the coupling of the segments 6–7, 8–10 and 11–16, which had been obtained by the reaction of the corresponding amino acids with 2H-azirin-3-amines. Treatment of the threonine derivative, (I), with the Aib synthon, (II), yielded the title dipeptide, (III), and the analogous reaction of the N-protected valine, (IV), with the Aib–Hyp dipeptide synthon, (V), led to the title tripeptide, (VI) (see scheme). The X-ray crystallographic analyses of compounds (III) and (VI) were undertaken in order to elucidate their molecular structures and conformations and to investigate their hydrogen-bonding interactions, and the results are presented here.
The molecular structures of compounds (III) and (VI) are shown in Figs. 1 and 2, respectively. The bond lengths and angles fall within normal ranges. The torsion angles along the peptide backbones of (III) and (VI) are listed in Table 1, together with those of the related compound, Z-Val-Aib-Pro-OH (Pradeille et al., 2005). Although there are small variations in the magnitudes of the torsion angles, their signs are consistent and on the whole the values are quite similar. The two consecutive small torsion angles on either side of atom C14 in the Aib group confirm the turn- or helix-inducing property of Aib in a peptide chain. The turns occur despite the absence of any significant intramolecular hydrogen bonds. The proline ring in compound (VI) has a slightly distorted half-chair conformation twisted on C26—C27, with a value for the ϕ2 puckering parameter (Cremer & Pople, 1975) of 94.9 (4)° for the atom sequence N16—C17—C27—C26—C25. Atoms C26 and C27 lie 0.367 (2) and −0.206 (2) Å, respectively, from the plane defined by atoms N16, C17 and C25.
In the structure of compound (III), the amide H atom of Aib forms an intermolecular hydrogen bond with the carbonyl O atom of Aib of a neighbouring molecule (Table 2). This thereby links the molecules into extended chains which run parallel to the [010] direction (Fig. 3) and can be described by a graph-set motif (Bernstein et al., 1995) of C(5). The amide H atom of Thr is not involved in any intermolecular interactions. Although this H atom is 2.50 (2) Å from the O atom of the benzoyl substituent on Thr, this intramolecular interaction is probably insignificant, given the very sharp N—H···O angle of 104 (2)°.
In the structure of compound (VI), the amide H atom of Val forms an intermolecular hydrogen bond with the C-terminal carbonyl O atom of a neighbouring molecule (Table 3). This interaction links the molecules into extended chains which run parallel to the [010] direction and can be described by a graph-set motif of C(11). As with compound (III), the amide H atom of Aib forms an intermolecular hydrogen bond with the carbonyl O atom of Aib of a different neighbouring molecule. This interaction links the molecules into extended chains which run parallel to the [100] direction and can be described by a graph-set motif of C(5). The combination of the hydrogen-bonding interactions links the molecules into two-dimensional networks which lie parallel to the (001) plane (Fig. 4). Within these networks, the two different hydrogen-bonding interactions unite to form a ring which can be described by the binary graph-set motif of R44(28).