The structural characterization of several polymorphic forms of a compound allow the interplay between molecular conformation and intermolecular interactions to be studied, which can contribute to the development of strategies for the rational preparation of materials with desirable properties and the tailoring of intermolecular interactions to produce solids with predictable characteristics of interest in crystal engineering. The crystal structures of two new polymorphs of 5,6-dimethyl-2-(pyridin-2-yl)-1-[(pyridin-2-yl)methyl]-1
H-benzimidazole, C
20H
18N
4, are reported. The previously reported polymorph, (1) [Geiger & DeStefano (2014).
Acta Cryst. E
70, o365], exhibits the space group
C2/
c, whereas polymorphs (2) and (3) presented here are in the
Pnma and
P
space groups, respectively. The molecular structures of the three forms differ in their orientations of the 2-(pyridin-2-yl)- and 1-[(pyridin-2-yl)methyl]- substituents. Density functional theory (DFT) calculations show that the relative energies of the molecule in the three conformations follows the order (1) < (2) < (3), with a spread of 10.6 kJ mol
−1. An analysis of the Hirshfeld surfaces shows that the three polymorphs exhibit intermolecular C—H

N interactions, which can be classified into six types. Based on DFT calculations involving pairs of molecules having the observed interactions, the C—H

N energy in the systems explored is approximately −11.2 to −14.4 kJ mol
−1.
Supporting information
CCDC references: 1508839; 1486768
For both compounds, data collection: APEX2 (Bruker, 2013); cell refinement: SAINT (Bruker, 2013); data reduction: SAINT (Bruker, 2013); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015); molecular graphics: PLATON (Spek, 2009) and Mercury (Macrae et al., 2006); software used to prepare material for publication: publCIF (Westrip, 2010).
(2) 5,6-Dimethyl-2-(pyridin-2-yl)-1-[(pyridin-2-yl)methyl]-1
H-benzimidazole
top
Crystal data top
C20H18N4 | Dx = 1.285 Mg m−3 |
Mr = 314.38 | Mo Kα radiation, λ = 0.71073 Å |
Orthorhombic, Pbca | Cell parameters from 9958 reflections |
a = 7.9688 (5) Å | θ = 2.8–25.0° |
b = 12.5553 (8) Å | µ = 0.08 mm−1 |
c = 32.4903 (18) Å | T = 200 K |
V = 3250.7 (3) Å3 | Block, colourless |
Z = 8 | 0.60 × 0.50 × 0.40 mm |
F(000) = 1328 | |
Data collection top
Bruker SMART X2S benchtop diffractometer | 2872 independent reflections |
Radiation source: sealed microfocus tube | 2542 reflections with I > 2σ(I) |
Doubly curved silicon crystal monochromator | Rint = 0.068 |
Detector resolution: 8.3330 pixels mm-1 | θmax = 25.0°, θmin = 2.5° |
ω scans | h = −9→9 |
Absorption correction: multi-scan (SADABS; Bruker, 2013) | k = −14→14 |
Tmin = 0.61, Tmax = 0.97 | l = −37→38 |
58326 measured reflections | |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.051 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.139 | H-atom parameters constrained |
S = 1.10 | w = 1/[σ2(Fo2) + (0.0585P)2 + 1.8907P] where P = (Fo2 + 2Fc2)/3 |
2872 reflections | (Δ/σ)max < 0.001 |
219 parameters | Δρmax = 0.38 e Å−3 |
0 restraints | Δρmin = −0.22 e Å−3 |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and
goodness of fit S are based on F2, conventional R-factors R are based
on F, with F set to zero for negative F2. The threshold expression of
F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is
not relevant to the choice of reflections for refinement. R-factors based
on F2 are statistically about twice as large as those based on F, and R-
factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
N1 | 0.13331 (19) | 0.39604 (12) | 0.11921 (5) | 0.0273 (4) | |
N2 | 0.24371 (18) | 0.23267 (12) | 0.12885 (5) | 0.0282 (4) | |
N3 | 0.2564 (3) | 0.37330 (13) | 0.03304 (6) | 0.0468 (5) | |
N4 | −0.2229 (2) | 0.41705 (13) | 0.10563 (6) | 0.0383 (4) | |
C1 | 0.1354 (2) | 0.37890 (14) | 0.16124 (6) | 0.0274 (4) | |
C2 | 0.2037 (2) | 0.27744 (14) | 0.16682 (6) | 0.0287 (4) | |
C3 | 0.2216 (2) | 0.23642 (15) | 0.20667 (6) | 0.0314 (4) | |
H3 | 0.2663 | 0.1671 | 0.2108 | 0.038* | |
C4 | 0.1729 (2) | 0.29855 (16) | 0.24001 (6) | 0.0341 (5) | |
C5 | 0.1052 (2) | 0.40234 (16) | 0.23375 (6) | 0.0332 (5) | |
C6 | 0.0850 (2) | 0.44255 (15) | 0.19427 (6) | 0.0319 (4) | |
H6 | 0.0384 | 0.5112 | 0.1898 | 0.038* | |
C7 | 0.1989 (2) | 0.30526 (14) | 0.10145 (6) | 0.0277 (4) | |
C8 | 0.2231 (2) | 0.28863 (15) | 0.05676 (6) | 0.0302 (4) | |
C9 | 0.2147 (3) | 0.18605 (16) | 0.04127 (6) | 0.0406 (5) | |
H9 | 0.189 | 0.1278 | 0.0588 | 0.049* | |
C10 | 0.2443 (3) | 0.16985 (18) | −0.00010 (7) | 0.0504 (6) | |
H10 | 0.2414 | 0.1 | −0.0113 | 0.06* | |
C11 | 0.2779 (3) | 0.25515 (18) | −0.02479 (7) | 0.0508 (6) | |
H11 | 0.2979 | 0.2461 | −0.0534 | 0.061* | |
C12 | 0.2818 (4) | 0.35411 (19) | −0.00715 (7) | 0.0592 (7) | |
H12 | 0.304 | 0.4133 | −0.0245 | 0.071* | |
C13 | 0.0601 (2) | 0.49026 (14) | 0.09983 (6) | 0.0296 (4) | |
H13A | 0.0749 | 0.4851 | 0.0696 | 0.036* | |
H13B | 0.121 | 0.5543 | 0.1094 | 0.036* | |
C14 | −0.1241 (2) | 0.50305 (14) | 0.10935 (5) | 0.0265 (4) | |
C15 | −0.1855 (3) | 0.60290 (15) | 0.12019 (6) | 0.0332 (4) | |
H15 | −0.1118 | 0.6619 | 0.1229 | 0.04* | |
C16 | −0.3557 (3) | 0.61455 (17) | 0.12686 (6) | 0.0395 (5) | |
H16 | −0.4013 | 0.682 | 0.1339 | 0.047* | |
C17 | −0.4581 (3) | 0.52717 (18) | 0.12310 (7) | 0.0430 (5) | |
H17 | −0.5756 | 0.5329 | 0.1275 | 0.052* | |
C18 | −0.3865 (3) | 0.43082 (18) | 0.11275 (7) | 0.0471 (6) | |
H18 | −0.4579 | 0.3705 | 0.1106 | 0.057* | |
C41 | 0.1946 (3) | 0.25577 (19) | 0.28305 (6) | 0.0449 (5) | |
H41A | 0.2365 | 0.1825 | 0.2817 | 0.067* | |
H41B | 0.0863 | 0.2568 | 0.2973 | 0.067* | |
H41C | 0.275 | 0.3002 | 0.298 | 0.067* | |
C51 | 0.0565 (3) | 0.46981 (18) | 0.27030 (6) | 0.0436 (5) | |
H51A | 0.0134 | 0.5385 | 0.2607 | 0.065* | |
H51B | 0.1551 | 0.4815 | 0.2878 | 0.065* | |
H51C | −0.0306 | 0.4332 | 0.2862 | 0.065* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
N1 | 0.0267 (8) | 0.0257 (8) | 0.0296 (9) | 0.0019 (6) | 0.0004 (6) | −0.0016 (6) |
N2 | 0.0281 (8) | 0.0260 (8) | 0.0306 (9) | 0.0002 (6) | −0.0006 (6) | −0.0021 (6) |
N3 | 0.0728 (13) | 0.0302 (9) | 0.0374 (10) | −0.0025 (9) | 0.0184 (9) | −0.0024 (8) |
N4 | 0.0386 (10) | 0.0277 (8) | 0.0487 (11) | −0.0028 (7) | −0.0060 (8) | −0.0042 (7) |
C1 | 0.0230 (9) | 0.0305 (9) | 0.0289 (10) | −0.0025 (7) | −0.0001 (7) | −0.0017 (7) |
C2 | 0.0269 (9) | 0.0269 (9) | 0.0324 (10) | −0.0020 (7) | −0.0020 (7) | −0.0016 (7) |
C3 | 0.0325 (10) | 0.0279 (9) | 0.0338 (11) | 0.0001 (8) | −0.0022 (8) | 0.0023 (8) |
C4 | 0.0311 (10) | 0.0393 (11) | 0.0318 (11) | −0.0049 (8) | −0.0010 (8) | 0.0013 (8) |
C5 | 0.0302 (10) | 0.0377 (11) | 0.0317 (11) | −0.0056 (8) | 0.0012 (8) | −0.0031 (8) |
C6 | 0.0312 (9) | 0.0300 (10) | 0.0346 (11) | 0.0015 (8) | −0.0004 (8) | −0.0041 (8) |
C7 | 0.0239 (9) | 0.0262 (9) | 0.0331 (10) | −0.0015 (7) | 0.0002 (7) | −0.0039 (8) |
C8 | 0.0318 (10) | 0.0281 (9) | 0.0307 (10) | 0.0014 (8) | 0.0005 (8) | −0.0015 (8) |
C9 | 0.0601 (14) | 0.0298 (10) | 0.0320 (11) | 0.0038 (10) | −0.0036 (10) | 0.0002 (8) |
C10 | 0.0824 (18) | 0.0317 (11) | 0.0370 (13) | 0.0064 (11) | −0.0029 (11) | −0.0096 (9) |
C11 | 0.0779 (17) | 0.0427 (12) | 0.0320 (12) | 0.0079 (12) | 0.0110 (11) | −0.0040 (10) |
C12 | 0.100 (2) | 0.0372 (13) | 0.0404 (13) | 0.0020 (13) | 0.0270 (13) | 0.0026 (10) |
C13 | 0.0309 (10) | 0.0253 (9) | 0.0327 (10) | 0.0014 (7) | 0.0011 (8) | 0.0012 (7) |
C14 | 0.0297 (9) | 0.0268 (9) | 0.0229 (9) | 0.0027 (7) | −0.0030 (7) | 0.0002 (7) |
C15 | 0.0376 (10) | 0.0267 (10) | 0.0354 (11) | 0.0043 (8) | −0.0013 (8) | −0.0015 (8) |
C16 | 0.0396 (11) | 0.0407 (12) | 0.0383 (12) | 0.0128 (9) | −0.0041 (9) | −0.0017 (9) |
C17 | 0.0278 (10) | 0.0560 (14) | 0.0451 (12) | 0.0053 (10) | −0.0039 (9) | 0.0100 (10) |
C18 | 0.0332 (11) | 0.0443 (13) | 0.0638 (15) | −0.0090 (9) | −0.0087 (10) | 0.0043 (11) |
C41 | 0.0525 (13) | 0.0482 (13) | 0.0339 (12) | −0.0014 (10) | −0.0032 (10) | 0.0062 (10) |
C51 | 0.0484 (13) | 0.0468 (12) | 0.0356 (12) | −0.0032 (10) | 0.0024 (9) | −0.0074 (9) |
Geometric parameters (Å, º) top
N1—C7 | 1.380 (2) | C10—C11 | 1.365 (3) |
N1—C1 | 1.383 (2) | C10—H10 | 0.95 |
N1—C13 | 1.462 (2) | C11—C12 | 1.369 (3) |
N2—C7 | 1.323 (2) | C11—H11 | 0.95 |
N2—C2 | 1.393 (2) | C12—H12 | 0.95 |
N3—C8 | 1.339 (3) | C13—C14 | 1.508 (3) |
N3—C12 | 1.343 (3) | C13—H13A | 0.99 |
N4—C18 | 1.335 (3) | C13—H13B | 0.99 |
N4—C14 | 1.342 (2) | C14—C15 | 1.391 (3) |
C1—C2 | 1.397 (2) | C15—C16 | 1.382 (3) |
C1—C6 | 1.397 (3) | C15—H15 | 0.95 |
C2—C3 | 1.401 (3) | C16—C17 | 1.373 (3) |
C3—C4 | 1.390 (3) | C16—H16 | 0.95 |
C3—H3 | 0.95 | C17—C18 | 1.379 (3) |
C4—C5 | 1.425 (3) | C17—H17 | 0.95 |
C4—C41 | 1.508 (3) | C18—H18 | 0.95 |
C5—C6 | 1.388 (3) | C41—H41A | 0.98 |
C5—C51 | 1.509 (3) | C41—H41B | 0.98 |
C6—H6 | 0.95 | C41—H41C | 0.98 |
C7—C8 | 1.480 (3) | C51—H51A | 0.98 |
C8—C9 | 1.384 (3) | C51—H51B | 0.98 |
C9—C10 | 1.380 (3) | C51—H51C | 0.98 |
C9—H9 | 0.95 | | |
| | | |
C7—N1—C1 | 106.25 (15) | C12—C11—H11 | 121.0 |
C7—N1—C13 | 129.76 (16) | N3—C12—C11 | 124.5 (2) |
C1—N1—C13 | 123.79 (15) | N3—C12—H12 | 117.7 |
C7—N2—C2 | 104.84 (15) | C11—C12—H12 | 117.7 |
C8—N3—C12 | 116.53 (18) | N1—C13—C14 | 112.74 (15) |
C18—N4—C14 | 116.94 (17) | N1—C13—H13A | 109.0 |
N1—C1—C2 | 105.94 (15) | C14—C13—H13A | 109.0 |
N1—C1—C6 | 131.78 (17) | N1—C13—H13B | 109.0 |
C2—C1—C6 | 122.28 (17) | C14—C13—H13B | 109.0 |
N2—C2—C1 | 110.03 (16) | H13A—C13—H13B | 107.8 |
N2—C2—C3 | 130.31 (17) | N4—C14—C15 | 122.80 (17) |
C1—C2—C3 | 119.66 (17) | N4—C14—C13 | 117.83 (16) |
C4—C3—C2 | 119.05 (17) | C15—C14—C13 | 119.34 (16) |
C4—C3—H3 | 120.5 | C16—C15—C14 | 118.71 (19) |
C2—C3—H3 | 120.5 | C16—C15—H15 | 120.6 |
C3—C4—C5 | 120.51 (17) | C14—C15—H15 | 120.6 |
C3—C4—C41 | 119.39 (18) | C17—C16—C15 | 119.02 (19) |
C5—C4—C41 | 120.10 (18) | C17—C16—H16 | 120.5 |
C6—C5—C4 | 120.56 (17) | C15—C16—H16 | 120.5 |
C6—C5—C51 | 119.54 (19) | C16—C17—C18 | 118.47 (19) |
C4—C5—C51 | 119.89 (18) | C16—C17—H17 | 120.8 |
C5—C6—C1 | 117.94 (18) | C18—C17—H17 | 120.8 |
C5—C6—H6 | 121.0 | N4—C18—C17 | 124.1 (2) |
C1—C6—H6 | 121.0 | N4—C18—H18 | 118.0 |
N2—C7—N1 | 112.94 (16) | C17—C18—H18 | 118.0 |
N2—C7—C8 | 121.86 (16) | C4—C41—H41A | 109.5 |
N1—C7—C8 | 125.18 (16) | C4—C41—H41B | 109.5 |
N3—C8—C9 | 122.61 (18) | H41A—C41—H41B | 109.5 |
N3—C8—C7 | 118.58 (16) | C4—C41—H41C | 109.5 |
C9—C8—C7 | 118.79 (17) | H41A—C41—H41C | 109.5 |
C10—C9—C8 | 118.9 (2) | H41B—C41—H41C | 109.5 |
C10—C9—H9 | 120.6 | C5—C51—H51A | 109.5 |
C8—C9—H9 | 120.6 | C5—C51—H51B | 109.5 |
C11—C10—C9 | 119.4 (2) | H51A—C51—H51B | 109.5 |
C11—C10—H10 | 120.3 | C5—C51—H51C | 109.5 |
C9—C10—H10 | 120.3 | H51A—C51—H51C | 109.5 |
C10—C11—C12 | 118.1 (2) | H51B—C51—H51C | 109.5 |
C10—C11—H11 | 121.0 | | |
| | | |
C7—N1—C1—C2 | 0.21 (19) | C1—N1—C7—C8 | −179.01 (16) |
C13—N1—C1—C2 | 175.47 (15) | C13—N1—C7—C8 | 6.1 (3) |
C7—N1—C1—C6 | 179.90 (19) | C12—N3—C8—C9 | 0.0 (3) |
C13—N1—C1—C6 | −4.8 (3) | C12—N3—C8—C7 | 178.3 (2) |
C7—N2—C2—C1 | −0.57 (19) | N2—C7—C8—N3 | −147.33 (19) |
C7—N2—C2—C3 | 179.25 (19) | N1—C7—C8—N3 | 30.9 (3) |
N1—C1—C2—N2 | 0.2 (2) | N2—C7—C8—C9 | 31.1 (3) |
C6—C1—C2—N2 | −179.51 (16) | N1—C7—C8—C9 | −150.64 (19) |
N1—C1—C2—C3 | −179.63 (16) | N3—C8—C9—C10 | 1.1 (3) |
C6—C1—C2—C3 | 0.6 (3) | C7—C8—C9—C10 | −177.28 (19) |
N2—C2—C3—C4 | 179.31 (18) | C8—C9—C10—C11 | −1.3 (4) |
C1—C2—C3—C4 | −0.9 (3) | C9—C10—C11—C12 | 0.4 (4) |
C2—C3—C4—C5 | 0.2 (3) | C8—N3—C12—C11 | −0.9 (4) |
C2—C3—C4—C41 | −178.91 (18) | C10—C11—C12—N3 | 0.7 (5) |
C3—C4—C5—C6 | 0.8 (3) | C7—N1—C13—C14 | 114.6 (2) |
C41—C4—C5—C6 | 179.87 (18) | C1—N1—C13—C14 | −59.5 (2) |
C3—C4—C5—C51 | −178.65 (18) | C18—N4—C14—C15 | 0.2 (3) |
C41—C4—C5—C51 | 0.5 (3) | C18—N4—C14—C13 | −177.67 (18) |
C4—C5—C6—C1 | −1.0 (3) | N1—C13—C14—N4 | −46.8 (2) |
C51—C5—C6—C1 | 178.42 (17) | N1—C13—C14—C15 | 135.30 (18) |
N1—C1—C6—C5 | −179.34 (18) | N4—C14—C15—C16 | −0.9 (3) |
C2—C1—C6—C5 | 0.3 (3) | C13—C14—C15—C16 | 176.88 (17) |
C2—N2—C7—N1 | 0.73 (19) | C14—C15—C16—C17 | 0.8 (3) |
C2—N2—C7—C8 | 179.19 (16) | C15—C16—C17—C18 | 0.0 (3) |
C1—N1—C7—N2 | −0.6 (2) | C14—N4—C18—C17 | 0.7 (3) |
C13—N1—C7—N2 | −175.49 (16) | C16—C17—C18—N4 | −0.8 (3) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
C13—H13A···N3 | 0.99 | 2.34 | 3.052 (3) | 128 |
C13—H13B···N2i | 0.99 | 2.56 | 3.549 (2) | 173 |
C11—H11···N4ii | 0.95 | 2.67 | 3.402 (3) | 135 |
Symmetry codes: (i) −x+1/2, y+1/2, z; (ii) x+1/2, −y+1/2, −z. |
(3) 5,6-Dimethyl-2-(pyridin-2-yl)-1-[(pyridin-2-yl)methyl]-1
H-benzimidazole
top
Crystal data top
C20H18N4 | Z = 2 |
Mr = 314.38 | F(000) = 332 |
Triclinic, P1 | Dx = 1.256 Mg m−3 |
a = 6.1920 (18) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 8.214 (3) Å | Cell parameters from 3700 reflections |
c = 16.488 (5) Å | θ = 2.5–25.2° |
α = 85.335 (9)° | µ = 0.08 mm−1 |
β = 85.257 (9)° | T = 200 K |
γ = 85.774 (9)° | Block, colourless |
V = 831.1 (4) Å3 | 0.50 × 0.40 × 0.40 mm |
Data collection top
Bruker SMART X2S benchtop diffractometer | 2964 independent reflections |
Radiation source: sealed microfocus tube | 2061 reflections with I > 2σ(I) |
Doubly curved silicon crystal monochromator | Rint = 0.074 |
Detector resolution: 8.3330 pixels mm-1 | θmax = 25.4°, θmin = 2.5° |
ω scans | h = −7→7 |
Absorption correction: multi-scan (SADABS; Bruker, 2013) | k = −9→9 |
Tmin = 0.40, Tmax = 0.97 | l = −19→19 |
9072 measured reflections | |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.061 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.196 | H-atom parameters constrained |
S = 1.06 | w = 1/[σ2(Fo2) + (0.1081P)2 + 0.0053P] where P = (Fo2 + 2Fc2)/3 |
2964 reflections | (Δ/σ)max < 0.001 |
219 parameters | Δρmax = 0.26 e Å−3 |
0 restraints | Δρmin = −0.26 e Å−3 |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and
goodness of fit S are based on F2, conventional R-factors R are based
on F, with F set to zero for negative F2. The threshold expression of
F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is
not relevant to the choice of reflections for refinement. R-factors based
on F2 are statistically about twice as large as those based on F, and R-
factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
N1 | 0.7259 (3) | 0.6674 (2) | 0.73758 (10) | 0.0383 (5) | |
N2 | 0.3894 (3) | 0.7900 (2) | 0.75758 (11) | 0.0396 (5) | |
N3 | 0.7628 (4) | 0.6764 (3) | 0.91370 (13) | 0.0646 (7) | |
N4 | 1.0980 (3) | 0.3080 (2) | 0.78326 (12) | 0.0508 (6) | |
C1 | 0.6457 (4) | 0.6990 (2) | 0.66084 (13) | 0.0383 (5) | |
C2 | 0.4390 (3) | 0.7756 (2) | 0.67451 (13) | 0.0373 (5) | |
C3 | 0.3137 (4) | 0.8233 (2) | 0.60796 (13) | 0.0418 (6) | |
H3 | 0.1729 | 0.876 | 0.6167 | 0.05* | |
C4 | 0.3974 (4) | 0.7929 (3) | 0.52988 (14) | 0.0438 (6) | |
C5 | 0.6089 (4) | 0.7137 (3) | 0.51690 (13) | 0.0449 (6) | |
C6 | 0.7334 (4) | 0.6674 (3) | 0.58233 (13) | 0.0429 (6) | |
H6 | 0.8748 | 0.6155 | 0.5739 | 0.052* | |
C7 | 0.5631 (4) | 0.7234 (2) | 0.79296 (13) | 0.0379 (5) | |
C8 | 0.5730 (4) | 0.7172 (3) | 0.88284 (13) | 0.0421 (6) | |
C9 | 0.3867 (5) | 0.7563 (4) | 0.93111 (16) | 0.0661 (8) | |
H9 | 0.2536 | 0.7853 | 0.9071 | 0.079* | |
C10 | 0.3954 (5) | 0.7529 (4) | 1.01471 (17) | 0.0779 (9) | |
H10 | 0.2687 | 0.78 | 1.0488 | 0.094* | |
C11 | 0.5898 (5) | 0.7097 (4) | 1.04777 (17) | 0.0699 (8) | |
H11 | 0.6006 | 0.7044 | 1.1051 | 0.084* | |
C12 | 0.7664 (5) | 0.6748 (4) | 0.99578 (17) | 0.0776 (9) | |
H12 | 0.9014 | 0.6474 | 1.0186 | 0.093* | |
C13 | 0.9315 (3) | 0.5740 (2) | 0.75159 (14) | 0.0415 (5) | |
H13A | 0.9894 | 0.6112 | 0.8006 | 0.05* | |
H13B | 1.0371 | 0.5984 | 0.7045 | 0.05* | |
C14 | 0.9141 (3) | 0.3904 (2) | 0.76334 (11) | 0.0341 (5) | |
C15 | 0.7271 (4) | 0.3144 (3) | 0.75338 (13) | 0.0430 (6) | |
H15 | 0.5979 | 0.3768 | 0.7399 | 0.052* | |
C16 | 0.7326 (4) | 0.1437 (3) | 0.76353 (15) | 0.0532 (7) | |
H16 | 0.6068 | 0.0881 | 0.7568 | 0.064* | |
C17 | 0.9217 (5) | 0.0570 (3) | 0.78328 (17) | 0.0594 (7) | |
H17 | 0.9303 | −0.0592 | 0.7899 | 0.071* | |
C18 | 1.0972 (4) | 0.1431 (3) | 0.79319 (18) | 0.0626 (7) | |
H18 | 1.227 | 0.0831 | 0.808 | 0.075* | |
C41 | 0.2616 (5) | 0.8433 (3) | 0.45814 (15) | 0.0595 (7) | |
H41A | 0.1182 | 0.8887 | 0.4783 | 0.089* | |
H41B | 0.2449 | 0.7474 | 0.4281 | 0.089* | |
H41C | 0.3343 | 0.9263 | 0.4218 | 0.089* | |
C51 | 0.6995 (5) | 0.6796 (3) | 0.43136 (15) | 0.0615 (7) | |
H51A | 0.6106 | 0.6022 | 0.4094 | 0.092* | |
H51B | 0.8493 | 0.6324 | 0.4329 | 0.092* | |
H51C | 0.6973 | 0.782 | 0.3964 | 0.092* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
N1 | 0.0354 (10) | 0.0353 (9) | 0.0442 (11) | 0.0030 (8) | −0.0070 (8) | −0.0041 (7) |
N2 | 0.0354 (10) | 0.0401 (10) | 0.0430 (10) | 0.0030 (8) | −0.0045 (8) | −0.0048 (8) |
N3 | 0.0493 (13) | 0.0950 (18) | 0.0486 (13) | 0.0060 (12) | −0.0111 (10) | −0.0023 (11) |
N4 | 0.0348 (11) | 0.0445 (11) | 0.0732 (14) | 0.0053 (9) | −0.0110 (10) | −0.0052 (9) |
C1 | 0.0395 (12) | 0.0327 (10) | 0.0439 (12) | −0.0024 (9) | −0.0089 (10) | −0.0032 (9) |
C2 | 0.0354 (12) | 0.0310 (10) | 0.0455 (12) | −0.0004 (9) | −0.0054 (9) | −0.0027 (8) |
C3 | 0.0361 (12) | 0.0419 (12) | 0.0472 (13) | 0.0023 (9) | −0.0086 (10) | −0.0018 (9) |
C4 | 0.0455 (13) | 0.0406 (12) | 0.0463 (13) | −0.0035 (10) | −0.0083 (10) | −0.0038 (9) |
C5 | 0.0477 (14) | 0.0463 (12) | 0.0421 (13) | −0.0075 (10) | −0.0040 (11) | −0.0069 (10) |
C6 | 0.0360 (12) | 0.0420 (12) | 0.0503 (14) | 0.0014 (10) | −0.0003 (10) | −0.0077 (10) |
C7 | 0.0406 (12) | 0.0302 (10) | 0.0430 (12) | −0.0015 (9) | −0.0050 (10) | −0.0034 (8) |
C8 | 0.0439 (13) | 0.0388 (11) | 0.0438 (13) | −0.0025 (10) | −0.0067 (10) | −0.0022 (9) |
C9 | 0.0501 (16) | 0.101 (2) | 0.0465 (15) | 0.0059 (15) | −0.0037 (12) | −0.0142 (14) |
C10 | 0.0612 (19) | 0.127 (3) | 0.0450 (16) | 0.0028 (18) | 0.0001 (14) | −0.0171 (16) |
C11 | 0.070 (2) | 0.097 (2) | 0.0450 (15) | −0.0091 (16) | −0.0113 (14) | −0.0073 (14) |
C12 | 0.0594 (19) | 0.123 (3) | 0.0515 (17) | 0.0037 (18) | −0.0186 (15) | −0.0059 (16) |
C13 | 0.0323 (11) | 0.0405 (12) | 0.0524 (13) | −0.0010 (9) | −0.0087 (10) | −0.0039 (9) |
C14 | 0.0333 (11) | 0.0392 (11) | 0.0298 (10) | 0.0026 (9) | −0.0035 (8) | −0.0064 (8) |
C15 | 0.0387 (12) | 0.0453 (12) | 0.0464 (13) | −0.0031 (10) | −0.0090 (10) | −0.0062 (9) |
C16 | 0.0524 (15) | 0.0480 (13) | 0.0616 (16) | −0.0151 (12) | −0.0054 (12) | −0.0065 (11) |
C17 | 0.0661 (18) | 0.0353 (12) | 0.0759 (18) | −0.0008 (12) | 0.0003 (14) | −0.0073 (11) |
C18 | 0.0472 (15) | 0.0445 (14) | 0.095 (2) | 0.0114 (12) | −0.0123 (14) | −0.0031 (13) |
C41 | 0.0582 (16) | 0.0703 (17) | 0.0516 (15) | −0.0034 (14) | −0.0174 (13) | −0.0017 (12) |
C51 | 0.0617 (17) | 0.0744 (18) | 0.0489 (15) | −0.0021 (14) | 0.0009 (13) | −0.0160 (13) |
Geometric parameters (Å, º) top
N1—C7 | 1.382 (3) | C10—C11 | 1.373 (4) |
N1—C1 | 1.395 (3) | C10—H10 | 0.95 |
N1—C13 | 1.462 (3) | C11—C12 | 1.361 (5) |
N2—C7 | 1.327 (3) | C11—H11 | 0.95 |
N2—C2 | 1.391 (3) | C12—H12 | 0.95 |
N3—C8 | 1.329 (3) | C13—C14 | 1.515 (3) |
N3—C12 | 1.354 (3) | C13—H13A | 0.99 |
N4—C14 | 1.332 (3) | C13—H13B | 0.99 |
N4—C18 | 1.351 (3) | C14—C15 | 1.383 (3) |
C1—C2 | 1.394 (3) | C15—C16 | 1.397 (3) |
C1—C6 | 1.398 (3) | C15—H15 | 0.95 |
C2—C3 | 1.409 (3) | C16—C17 | 1.374 (4) |
C3—C4 | 1.382 (3) | C16—H16 | 0.95 |
C3—H3 | 0.95 | C17—C18 | 1.367 (4) |
C4—C5 | 1.427 (3) | C17—H17 | 0.95 |
C4—C41 | 1.520 (3) | C18—H18 | 0.95 |
C5—C6 | 1.389 (3) | C41—H41A | 0.98 |
C5—C51 | 1.514 (3) | C41—H41B | 0.98 |
C6—H6 | 0.95 | C41—H41C | 0.98 |
C7—C8 | 1.485 (3) | C51—H51A | 0.98 |
C8—C9 | 1.379 (4) | C51—H51B | 0.98 |
C9—C10 | 1.382 (4) | C51—H51C | 0.98 |
C9—H9 | 0.95 | | |
| | | |
C7—N1—C1 | 106.00 (18) | C10—C11—H11 | 121.1 |
C7—N1—C13 | 129.92 (18) | N3—C12—C11 | 124.5 (3) |
C1—N1—C13 | 123.64 (18) | N3—C12—H12 | 117.8 |
C7—N2—C2 | 104.97 (18) | C11—C12—H12 | 117.8 |
C8—N3—C12 | 116.8 (2) | N1—C13—C14 | 114.18 (17) |
C14—N4—C18 | 117.16 (19) | N1—C13—H13A | 108.7 |
C2—C1—N1 | 105.85 (19) | C14—C13—H13A | 108.7 |
C2—C1—C6 | 121.71 (19) | N1—C13—H13B | 108.7 |
N1—C1—C6 | 132.4 (2) | C14—C13—H13B | 108.7 |
N2—C2—C1 | 110.30 (17) | H13A—C13—H13B | 107.6 |
N2—C2—C3 | 130.0 (2) | N4—C14—C15 | 122.83 (19) |
C1—C2—C3 | 119.7 (2) | N4—C14—C13 | 113.50 (18) |
C4—C3—C2 | 119.5 (2) | C15—C14—C13 | 123.66 (19) |
C4—C3—H3 | 120.3 | C14—C15—C16 | 118.5 (2) |
C2—C3—H3 | 120.3 | C14—C15—H15 | 120.8 |
C3—C4—C5 | 120.2 (2) | C16—C15—H15 | 120.8 |
C3—C4—C41 | 119.5 (2) | C17—C16—C15 | 119.3 (2) |
C5—C4—C41 | 120.3 (2) | C17—C16—H16 | 120.3 |
C6—C5—C4 | 120.5 (2) | C15—C16—H16 | 120.3 |
C6—C5—C51 | 119.5 (2) | C18—C17—C16 | 118.0 (2) |
C4—C5—C51 | 120.1 (2) | C18—C17—H17 | 121.0 |
C5—C6—C1 | 118.5 (2) | C16—C17—H17 | 121.0 |
C5—C6—H6 | 120.8 | N4—C18—C17 | 124.2 (2) |
C1—C6—H6 | 120.8 | N4—C18—H18 | 117.9 |
N2—C7—N1 | 112.87 (19) | C17—C18—H18 | 117.9 |
N2—C7—C8 | 121.1 (2) | C4—C41—H41A | 109.5 |
N1—C7—C8 | 126.0 (2) | C4—C41—H41B | 109.5 |
N3—C8—C9 | 122.4 (2) | H41A—C41—H41B | 109.5 |
N3—C8—C7 | 118.5 (2) | C4—C41—H41C | 109.5 |
C9—C8—C7 | 119.1 (2) | H41A—C41—H41C | 109.5 |
C8—C9—C10 | 119.4 (3) | H41B—C41—H41C | 109.5 |
C8—C9—H9 | 120.3 | C5—C51—H51A | 109.5 |
C10—C9—H9 | 120.3 | C5—C51—H51B | 109.5 |
C11—C10—C9 | 119.0 (3) | H51A—C51—H51B | 109.5 |
C11—C10—H10 | 120.5 | C5—C51—H51C | 109.5 |
C9—C10—H10 | 120.5 | H51A—C51—H51C | 109.5 |
C12—C11—C10 | 117.8 (3) | H51B—C51—H51C | 109.5 |
C12—C11—H11 | 121.1 | | |
| | | |
C7—N1—C1—C2 | 1.1 (2) | C1—N1—C7—C8 | −179.70 (18) |
C13—N1—C1—C2 | 174.10 (17) | C13—N1—C7—C8 | 7.9 (3) |
C7—N1—C1—C6 | −178.6 (2) | C12—N3—C8—C9 | 0.0 (4) |
C13—N1—C1—C6 | −5.6 (3) | C12—N3—C8—C7 | 178.9 (2) |
C7—N2—C2—C1 | 0.0 (2) | N2—C7—C8—N3 | −168.1 (2) |
C7—N2—C2—C3 | 179.0 (2) | N1—C7—C8—N3 | 10.3 (3) |
N1—C1—C2—N2 | −0.7 (2) | N2—C7—C8—C9 | 10.8 (3) |
C6—C1—C2—N2 | 179.01 (18) | N1—C7—C8—C9 | −170.8 (2) |
N1—C1—C2—C3 | −179.85 (17) | N3—C8—C9—C10 | −0.3 (4) |
C6—C1—C2—C3 | −0.1 (3) | C7—C8—C9—C10 | −179.1 (2) |
N2—C2—C3—C4 | −178.70 (19) | C8—C9—C10—C11 | −0.3 (5) |
C1—C2—C3—C4 | 0.2 (3) | C9—C10—C11—C12 | 1.1 (5) |
C2—C3—C4—C5 | 0.0 (3) | C8—N3—C12—C11 | 0.9 (5) |
C2—C3—C4—C41 | 179.58 (19) | C10—C11—C12—N3 | −1.4 (5) |
C3—C4—C5—C6 | −0.4 (3) | C7—N1—C13—C14 | 85.2 (2) |
C41—C4—C5—C6 | −180.0 (2) | C1—N1—C13—C14 | −86.0 (2) |
C3—C4—C5—C51 | 179.60 (19) | C18—N4—C14—C15 | 0.5 (3) |
C41—C4—C5—C51 | 0.1 (3) | C18—N4—C14—C13 | −178.7 (2) |
C4—C5—C6—C1 | 0.5 (3) | N1—C13—C14—N4 | −174.33 (17) |
C51—C5—C6—C1 | −179.49 (19) | N1—C13—C14—C15 | 6.5 (3) |
C2—C1—C6—C5 | −0.3 (3) | N4—C14—C15—C16 | −0.9 (3) |
N1—C1—C6—C5 | 179.4 (2) | C13—C14—C15—C16 | 178.1 (2) |
C2—N2—C7—N1 | 0.7 (2) | C14—C15—C16—C17 | 0.3 (4) |
C2—N2—C7—C8 | 179.33 (17) | C15—C16—C17—C18 | 0.8 (4) |
C1—N1—C7—N2 | −1.2 (2) | C14—N4—C18—C17 | 0.7 (4) |
C13—N1—C7—N2 | −173.57 (18) | C16—C17—C18—N4 | −1.3 (4) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
C13—H13A···N3 | 0.99 | 2.31 | 2.953 (3) | 121 |
C18—H18···N2i | 0.95 | 2.71 | 3.370 (3) | 127 |
C11—H11···N4ii | 0.95 | 2.72 | 3.508 (3) | 141 |
Symmetry codes: (i) x+1, y−1, z; (ii) −x+2, −y+1, −z+2. |
Selected geometrical parameters (Å, °) top | (1)a | (2) | (3) |
N1—C7 | 1.386 (3) | 1.380 (2) | 1.382 (3) |
N1—C13 | 1.462 (2) | 1.462 (2) | 1.462 (3) |
C7—C8 | 1.474 (3) | 1.480 (3) | 1.485 (3) |
C13—C14 | 1.508 (3) | 1.509 (2) | 1.515 (2) |
| | | |
N1—C7—C8 | 126.37 (17) | 125.18 (16) | 126.0 (2) |
N1—C13—C14 | 113.04 (15) | 112.72 (14) | 114.16 (15) |
| | | |
N1—C7—C8—N3 | 1.5 (3) | 31.0 (3) | 10.3 (3) |
N1—C13—C14—N4 | 171.72 (18) | -46.8 (2) | -174.32 (17) |
Reference: (a) Geiger & DeStefano (2014). |