MolProbity: all-atom structure validation for macromolecular crystallography

Chen, V.B.; Arendall, W.B.; Headd, J.J.; Keedy, D.A.; Immormino, R.M.; Kapral, G.J.; Murray, L.W.; Richardson, J.S.; Richardson, D.C.

doi:10.1107/S0907444909042073

Acta Crystallographica Section D
Acta Crystallographica
Section D BIOLOGICAL CRYSTALLOGRAPHY

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Figure 6
Close-up of a ribose-pucker outlier in the multi-criterion kinemage for 1n78 , with backbone and bases turned on. C574 has a short phosphate-to-glycosidic bond perpendicular (magenta line and cross), but was fitted with an intermediate pucker near C3′-endo. The bad pucker torques the connected groups strongly, probably causing the bond-angle outliers (red) and steric clashes (hot-pink spikes). Note that C574 is in the binding interface between RNA (white backbone) and enzyme (yellow backbone) close to the active site.

BIOLOGICAL
CRYSTALLOGRAPHY

ISSN: 1399-0047

Volume 66| Part 1| December 2010| Pages 12-21

doi:10.1107/S0907444909042073

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