Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S160053680503062X/hb6273sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S160053680503062X/hb6273Isup2.hkl |
CCDC reference: 287586
Key indicators
- Single-crystal X-ray study
- T = 296 K
- Mean (C-C) = 0.005 Å
- R factor = 0.032
- wR factor = 0.089
- Data-to-parameter ratio = 16.3
checkCIF/PLATON results
No syntax errors found
Alert level C PLAT066_ALERT_1_C Predicted and Reported Transmissions Identical . ? PLAT220_ALERT_2_C Large Non-Solvent C Ueq(max)/Ueq(min) ... 2.52 Ratio
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 2 ALERT level C = Check and explain 0 ALERT level G = General alerts; check 1 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 1 ALERT type 2 Indicator that the structure model may be wrong or deficient 0 ALERT type 3 Indicator that the structure quality may be low 0 ALERT type 4 Improvement, methodology, query or suggestion
First, biq (5.0 mg dissolved in 2 ml dimethylformamide, DMF) was reacted with palladium acetate, Pd(CH3COOH)2 (4.4 mg in 2 ml DMF) for 15 min at room temperature (molar ratio of 1:1). An equimolar amount of ca dissolved to DMF was then added with stirring. This mixture was left to stand at room temperature and yielded red plate-shaped crystals of (I) over a period of days.
All H atoms were located in difference Fourier maps and then repositioned in idealized locations and treated as riding, with C—H = 0.93 Å and Uiso(H) = 1.2Ueq(carrier).
Data collection: MSC/AFC Diffractometer Control Software (Molecular Structure Corporation, 1992); cell refinement: MSC/AFC Diffractometer Control Software; data reduction: TEXSAN (Molecular Structure Corporation, 2000); program(s) used to solve structure: SIR97 (Altomare et al., 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEPII (Johnson, 1976); software used to prepare material for publication: TEXSAN (Molecular Structure Corporation, 2000).
Fig. 1. The molecular structure of (I), showing 50% displacement ellipsoids for the non-H atoms. |
[Pd(C6H4O2)(C18H12N2)] | F(000) = 944.0 |
Mr = 470.81 | Dx = 1.686 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.7107 Å |
Hall symbol: -P 2ybc | Cell parameters from 25 reflections |
a = 11.042 (2) Å | θ = 14.4–15.0° |
b = 9.487 (2) Å | µ = 1.02 mm−1 |
c = 17.796 (2) Å | T = 296 K |
β = 95.635 (10)° | Plate, blue |
V = 1855.2 (6) Å3 | 0.20 × 0.15 × 0.10 mm |
Z = 4 |
Rigaku AFC-5R diffractometer | Rint = 0.043 |
ω–2θ scans | θmax = 27.5° |
Absorption correction: ψ scan (North et al., 1968) | h = 0→14 |
Tmin = 0.832, Tmax = 0.903 | k = 0→12 |
4749 measured reflections | l = −23→23 |
4267 independent reflections | 3 standard reflections every 150 reflections |
2996 reflections with I > 2σ(I) | intensity decay: 0.4% |
Refinement on F2 | H-atom parameters constrained |
R[F2 > 2σ(F2)] = 0.032 | w = 1/[σ2(Fo2) + (0.0349P)2] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.089 | (Δ/σ)max = 0.002 |
S = 1.07 | Δρmax = 0.47 e Å−3 |
4267 reflections | Δρmin = −0.35 e Å−3 |
262 parameters |
[Pd(C6H4O2)(C18H12N2)] | V = 1855.2 (6) Å3 |
Mr = 470.81 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 11.042 (2) Å | µ = 1.02 mm−1 |
b = 9.487 (2) Å | T = 296 K |
c = 17.796 (2) Å | 0.20 × 0.15 × 0.10 mm |
β = 95.635 (10)° |
Rigaku AFC-5R diffractometer | 2996 reflections with I > 2σ(I) |
Absorption correction: ψ scan (North et al., 1968) | Rint = 0.043 |
Tmin = 0.832, Tmax = 0.903 | 3 standard reflections every 150 reflections |
4749 measured reflections | intensity decay: 0.4% |
4267 independent reflections |
R[F2 > 2σ(F2)] = 0.032 | 262 parameters |
wR(F2) = 0.089 | H-atom parameters constrained |
S = 1.07 | Δρmax = 0.47 e Å−3 |
4267 reflections | Δρmin = −0.35 e Å−3 |
Refinement. Refinement using reflections with F2 > −10.0 σ(F2). The weighted R-factor (wR) and goodness of fit (S) are based on F2. R-factor (gt) are based on F. The threshold expression of F2 > 2.0 σ(F2) is used only for calculating R-factor (gt). |
x | y | z | Uiso*/Ueq | ||
Pd1 | 0.05885 (2) | 0.11461 (2) | 0.63043 (1) | 0.03864 (9) | |
O1 | 0.0582 (2) | −0.0464 (3) | 0.7018 (1) | 0.0486 (6) | |
O2 | 0.2308 (2) | 0.1338 (2) | 0.6746 (1) | 0.0477 (6) | |
N1 | −0.1090 (2) | 0.0813 (3) | 0.5725 (1) | 0.0363 (6) | |
N2 | 0.0631 (2) | 0.2649 (3) | 0.5482 (2) | 0.0409 (6) | |
C2 | −0.1195 (3) | 0.1450 (4) | 0.5050 (2) | 0.0387 (7) | |
C3 | −0.2194 (3) | 0.1224 (4) | 0.4512 (2) | 0.0474 (8) | |
C4 | −0.3056 (3) | 0.0267 (4) | 0.4649 (2) | 0.0486 (9) | |
C5 | −0.2987 (3) | −0.0417 (4) | 0.5348 (2) | 0.0425 (8) | |
C6 | −0.3882 (3) | −0.1396 (4) | 0.5528 (2) | 0.057 (1) | |
C7 | −0.3828 (4) | −0.1980 (5) | 0.6223 (2) | 0.062 (1) | |
C8 | −0.2884 (3) | −0.1644 (4) | 0.6768 (2) | 0.0534 (9) | |
C9 | −0.1985 (3) | −0.0728 (4) | 0.6616 (2) | 0.0458 (8) | |
C10 | −0.2007 (3) | −0.0094 (3) | 0.5898 (2) | 0.0391 (7) | |
C12 | −0.0208 (3) | 0.2425 (3) | 0.4903 (2) | 0.0404 (7) | |
C13 | −0.0154 (4) | 0.3061 (4) | 0.4196 (2) | 0.0487 (8) | |
C14 | 0.0775 (4) | 0.3945 (4) | 0.4086 (2) | 0.0553 (9) | |
C15 | 0.1649 (4) | 0.4264 (4) | 0.4684 (2) | 0.0531 (9) | |
C16 | 0.2619 (4) | 0.5215 (4) | 0.4608 (3) | 0.072 (1) | |
C17 | 0.3390 (4) | 0.5557 (5) | 0.5219 (4) | 0.092 (2) | |
C18 | 0.3237 (5) | 0.4990 (5) | 0.5931 (4) | 0.098 (2) | |
C19 | 0.2333 (4) | 0.4036 (4) | 0.6023 (3) | 0.075 (1) | |
C20 | 0.1538 (3) | 0.3630 (3) | 0.5397 (2) | 0.0496 (9) | |
C21 | 0.1731 (3) | −0.0774 (4) | 0.7297 (2) | 0.0401 (7) | |
C22 | 0.2017 (3) | −0.2026 (4) | 0.7679 (2) | 0.0485 (9) | |
C23 | 0.3229 (3) | −0.2311 (4) | 0.7931 (2) | 0.0530 (9) | |
C24 | 0.4124 (3) | −0.1369 (4) | 0.7801 (2) | 0.0519 (9) | |
C25 | 0.3840 (3) | −0.0112 (4) | 0.7418 (2) | 0.0503 (9) | |
C26 | 0.2644 (3) | 0.0181 (4) | 0.7160 (2) | 0.0411 (7) | |
H3 | −0.2263 | 0.1731 | 0.4062 | 0.0569* | |
H4 | −0.3689 | 0.0065 | 0.4281 | 0.0583* | |
H6 | −0.4512 | −0.1639 | 0.5166 | 0.0690* | |
H7 | −0.4427 | −0.2612 | 0.6337 | 0.0748* | |
H8 | −0.2864 | −0.2049 | 0.7245 | 0.0641* | |
H9 | −0.1357 | −0.0523 | 0.6987 | 0.0549* | |
H13 | −0.0754 | 0.2878 | 0.3804 | 0.0585* | |
H14 | 0.0831 | 0.4340 | 0.3613 | 0.0663* | |
H16 | 0.2725 | 0.5603 | 0.4139 | 0.0858* | |
H17 | 0.4029 | 0.6176 | 0.5166 | 0.1110* | |
H18 | 0.3758 | 0.5266 | 0.6348 | 0.1179* | |
H19 | 0.2245 | 0.3660 | 0.6498 | 0.0894* | |
H22 | 0.1408 | −0.2666 | 0.7765 | 0.0582* | |
H23 | 0.3429 | −0.3146 | 0.8188 | 0.0636* | |
H24 | 0.4929 | −0.1569 | 0.7970 | 0.0623* | |
H25 | 0.4452 | 0.0526 | 0.7335 | 0.0604* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Pd1 | 0.0411 (1) | 0.0347 (1) | 0.0389 (1) | −0.0002 (1) | −0.0022 (1) | −0.0016 (1) |
O1 | 0.041 (1) | 0.052 (1) | 0.051 (1) | −0.003 (1) | −0.002 (1) | 0.011 (1) |
O2 | 0.047 (1) | 0.038 (1) | 0.055 (1) | −0.007 (1) | −0.009 (1) | 0.006 (1) |
N1 | 0.038 (1) | 0.036 (1) | 0.035 (1) | 0.004 (1) | 0.004 (1) | −0.003 (1) |
N2 | 0.042 (2) | 0.034 (1) | 0.046 (2) | 0.003 (1) | 0.001 (1) | −0.001 (1) |
C2 | 0.041 (2) | 0.041 (2) | 0.035 (2) | 0.007 (1) | 0.006 (1) | −0.005 (1) |
C3 | 0.047 (2) | 0.059 (2) | 0.035 (2) | 0.002 (2) | 0.002 (1) | −0.002 (2) |
C4 | 0.042 (2) | 0.063 (2) | 0.040 (2) | 0.001 (2) | −0.002 (2) | −0.008 (2) |
C5 | 0.038 (2) | 0.044 (2) | 0.046 (2) | 0.003 (2) | 0.006 (1) | −0.006 (2) |
C6 | 0.043 (2) | 0.068 (3) | 0.060 (2) | −0.011 (2) | 0.001 (2) | −0.003 (2) |
C7 | 0.053 (2) | 0.062 (3) | 0.073 (3) | −0.015 (2) | 0.012 (2) | 0.007 (2) |
C8 | 0.051 (2) | 0.055 (2) | 0.055 (2) | −0.001 (2) | 0.009 (2) | 0.008 (2) |
C9 | 0.043 (2) | 0.048 (2) | 0.046 (2) | 0.004 (2) | 0.001 (2) | 0.002 (2) |
C10 | 0.036 (2) | 0.037 (2) | 0.045 (2) | 0.007 (1) | 0.008 (1) | −0.005 (1) |
C12 | 0.046 (2) | 0.035 (2) | 0.041 (2) | 0.007 (1) | 0.005 (1) | −0.005 (1) |
C13 | 0.060 (2) | 0.048 (2) | 0.039 (2) | −0.005 (2) | 0.005 (2) | −0.001 (2) |
C14 | 0.070 (3) | 0.048 (2) | 0.051 (2) | −0.002 (2) | 0.017 (2) | 0.001 (2) |
C15 | 0.052 (2) | 0.034 (2) | 0.074 (3) | 0.003 (2) | 0.014 (2) | 0.000 (2) |
C16 | 0.060 (3) | 0.048 (2) | 0.109 (4) | −0.006 (2) | 0.021 (3) | 0.012 (2) |
C17 | 0.058 (3) | 0.048 (3) | 0.168 (6) | −0.013 (2) | −0.005 (3) | 0.029 (3) |
C18 | 0.085 (4) | 0.054 (3) | 0.143 (5) | −0.027 (3) | −0.052 (3) | 0.031 (3) |
C19 | 0.080 (3) | 0.044 (2) | 0.092 (3) | −0.015 (2) | −0.032 (3) | 0.021 (2) |
C20 | 0.044 (2) | 0.030 (2) | 0.073 (3) | 0.003 (1) | −0.003 (2) | 0.003 (2) |
C21 | 0.040 (2) | 0.045 (2) | 0.034 (2) | −0.001 (1) | −0.001 (1) | −0.002 (1) |
C22 | 0.049 (2) | 0.050 (2) | 0.046 (2) | −0.005 (2) | 0.002 (2) | 0.008 (2) |
C23 | 0.056 (2) | 0.050 (2) | 0.051 (2) | 0.003 (2) | −0.001 (2) | 0.009 (2) |
C24 | 0.049 (2) | 0.053 (2) | 0.052 (2) | 0.004 (2) | −0.007 (2) | 0.005 (2) |
C25 | 0.045 (2) | 0.050 (2) | 0.055 (2) | −0.009 (2) | −0.001 (2) | 0.001 (2) |
C26 | 0.049 (2) | 0.037 (2) | 0.037 (2) | −0.005 (1) | 0.000 (1) | −0.002 (1) |
Pd1—O1 | 1.987 (2) | C12—C13 | 1.402 (5) |
Pd1—O2 | 1.990 (2) | C13—C14 | 1.353 (6) |
Pd1—N1 | 2.055 (3) | C13—H13 | 0.930 |
Pd1—N2 | 2.047 (3) | C14—C15 | 1.398 (5) |
O1—C21 | 1.349 (4) | C14—H14 | 0.930 |
O2—C26 | 1.355 (4) | C15—C16 | 1.417 (6) |
N1—C2 | 1.340 (4) | C15—C20 | 1.420 (6) |
N1—C10 | 1.386 (4) | C16—C17 | 1.354 (7) |
N2—C12 | 1.334 (4) | C16—H16 | 0.930 |
N2—C20 | 1.386 (4) | C17—C18 | 1.402 (9) |
C2—C3 | 1.405 (4) | C17—H17 | 0.930 |
C2—C12 | 1.472 (5) | C18—C19 | 1.369 (7) |
C3—C4 | 1.355 (5) | C18—H18 | 0.930 |
C3—H3 | 0.930 | C19—C20 | 1.403 (6) |
C4—C5 | 1.398 (5) | C19—H19 | 0.930 |
C4—H4 | 0.930 | C21—C22 | 1.389 (5) |
C5—C6 | 1.416 (5) | C21—C26 | 1.395 (5) |
C5—C10 | 1.419 (4) | C22—C23 | 1.396 (5) |
C6—C7 | 1.350 (6) | C22—H22 | 0.930 |
C6—H6 | 0.930 | C23—C24 | 1.369 (5) |
C7—C8 | 1.389 (5) | C23—H23 | 0.930 |
C7—H7 | 0.930 | C24—C25 | 1.394 (5) |
C8—C9 | 1.366 (5) | C24—H24 | 0.930 |
C8—H8 | 0.930 | C25—C26 | 1.383 (5) |
C9—C10 | 1.410 (5) | C25—H25 | 0.930 |
C9—H9 | 0.930 | ||
Pd1···C3i | 3.288 (4) | C3···C26i | 3.254 (5) |
Pd1···C2i | 3.555 (3) | C3···C21i | 3.336 (5) |
O1···C13i | 3.281 (4) | C3···C17iii | 3.380 (6) |
O1···C3i | 3.471 (4) | C4···C26i | 3.323 (5) |
O2···C4i | 3.093 (4) | C4···C6iv | 3.532 (5) |
O2···C8ii | 3.276 (4) | C8···C26v | 3.561 (5) |
O2···C3i | 3.298 (4) | C13···C20iii | 3.596 (5) |
O1—Pd1—O2 | 83.19 (9) | C2—C12—C13 | 121.8 (3) |
O1—Pd1—N1 | 98.19 (10) | C12—C13—C14 | 119.7 (3) |
O1—Pd1—N2 | 173.8 (1) | C12—C13—H13 | 120.1 |
O2—Pd1—N1 | 172.1 (1) | C14—C13—H13 | 120.1 |
O2—Pd1—N2 | 97.49 (10) | C13—C14—C15 | 120.0 (4) |
N1—Pd1—N2 | 80.3 (1) | C13—C14—H14 | 120.0 |
Pd1—O1—C21 | 109.9 (2) | C15—C14—H14 | 120.0 |
Pd1—O2—C26 | 109.9 (2) | C14—C15—C16 | 122.5 (4) |
Pd1—N1—C2 | 112.0 (2) | C14—C15—C20 | 118.4 (3) |
Pd1—N1—C10 | 128.9 (2) | C16—C15—C20 | 119.1 (4) |
C2—N1—C10 | 118.6 (3) | C15—C16—C17 | 119.8 (5) |
Pd1—N2—C12 | 112.2 (2) | C15—C16—H16 | 120.1 |
Pd1—N2—C20 | 127.8 (2) | C17—C16—H16 | 120.1 |
C12—N2—C20 | 118.5 (3) | C16—C17—C18 | 120.8 (5) |
N1—C2—C3 | 122.4 (3) | C16—C17—H17 | 119.6 |
N1—C2—C12 | 116.3 (3) | C18—C17—H17 | 119.6 |
C3—C2—C12 | 121.3 (3) | C17—C18—C19 | 121.0 (5) |
C2—C3—C4 | 119.8 (3) | C17—C18—H18 | 119.5 |
C2—C3—H3 | 120.1 | C19—C18—H18 | 119.5 |
C4—C3—H3 | 120.1 | C18—C19—C20 | 119.5 (5) |
C3—C4—C5 | 119.6 (3) | C18—C19—H19 | 120.2 |
C3—C4—H4 | 120.2 | C20—C19—H19 | 120.2 |
C5—C4—H4 | 120.2 | N2—C20—C15 | 120.5 (3) |
C4—C5—C6 | 121.8 (3) | N2—C20—C19 | 120.0 (4) |
C4—C5—C10 | 119.0 (3) | C15—C20—C19 | 119.5 (3) |
C6—C5—C10 | 119.2 (3) | O1—C21—C22 | 121.8 (3) |
C5—C6—C7 | 120.5 (3) | O1—C21—C26 | 117.6 (3) |
C5—C6—H6 | 119.8 | C22—C21—C26 | 120.5 (3) |
C7—C6—H6 | 119.8 | C21—C22—C23 | 119.2 (3) |
C6—C7—C8 | 120.5 (4) | C21—C22—H22 | 120.4 |
C6—C7—H7 | 119.7 | C23—C22—H22 | 120.4 |
C8—C7—H7 | 119.7 | C22—C23—C24 | 120.3 (3) |
C7—C8—C9 | 121.1 (4) | C22—C23—H23 | 119.8 |
C7—C8—H8 | 119.4 | C24—C23—H23 | 119.9 |
C9—C8—H8 | 119.4 | C23—C24—C25 | 120.7 (3) |
C8—C9—C10 | 120.2 (3) | C23—C24—H24 | 119.7 |
C8—C9—H9 | 119.9 | C25—C24—H24 | 119.7 |
C10—C9—H9 | 119.9 | C24—C25—C26 | 119.7 (3) |
N1—C10—C5 | 120.4 (3) | C24—C25—H25 | 120.2 |
N1—C10—C9 | 121.2 (3) | C26—C25—H25 | 120.2 |
C5—C10—C9 | 118.5 (3) | O2—C26—C21 | 117.2 (3) |
N2—C12—C2 | 115.6 (3) | O2—C26—C25 | 123.0 (3) |
N2—C12—C13 | 122.5 (3) | C21—C26—C25 | 119.7 (3) |
Pd1—O1—C21—C22 | −166.0 (3) | C2—N1—C10—C5 | 4.6 (5) |
Pd1—O1—C21—C26 | 11.1 (3) | C2—N1—C10—C9 | −176.1 (3) |
Pd1—O2—C26—C21 | −9.5 (4) | C2—C3—C4—C5 | 4.5 (5) |
Pd1—O2—C26—C25 | 167.5 (3) | C2—C12—N2—C20 | −175.6 (3) |
Pd1—N1—C2—C3 | 171.4 (3) | C2—C12—C13—C14 | −179.6 (3) |
Pd1—N1—C2—C12 | −9.4 (4) | C3—C2—N1—C10 | −0.4 (5) |
Pd1—N1—C10—C5 | −165.7 (2) | C3—C2—C12—C13 | −6.5 (5) |
Pd1—N1—C10—C9 | 13.7 (5) | C3—C4—C5—C6 | 178.2 (4) |
Pd1—N2—C12—C2 | 17.1 (4) | C3—C4—C5—C10 | −0.4 (5) |
Pd1—N2—C12—C13 | −162.4 (3) | C4—C3—C2—C12 | 176.6 (3) |
Pd1—N2—C20—C15 | 158.3 (3) | C4—C5—C6—C7 | −176.3 (4) |
Pd1—N2—C20—C19 | −23.8 (5) | C4—C5—C10—C9 | 176.4 (3) |
O1—Pd1—O2—C26 | 12.0 (2) | C5—C6—C7—C8 | −0.9 (6) |
O1—Pd1—N1—C2 | −159.8 (2) | C5—C10—C9—C8 | 0.8 (5) |
O1—Pd1—N1—C10 | 11.0 (3) | C6—C5—C10—C9 | −2.2 (5) |
O1—C21—C22—C23 | 177.7 (3) | C6—C7—C8—C9 | −0.6 (6) |
O1—C21—C26—O2 | −1.1 (4) | C7—C6—C5—C10 | 2.3 (6) |
O1—C21—C26—C25 | −178.2 (3) | C7—C8—C9—C10 | 0.6 (6) |
O2—Pd1—O1—C21 | −12.6 (2) | C10—N1—C2—C12 | 178.8 (3) |
O2—Pd1—N2—C12 | 155.2 (2) | C12—N2—C20—C15 | −6.8 (5) |
O2—Pd1—N2—C20 | −10.6 (3) | C12—N2—C20—C19 | 171.2 (3) |
O2—C26—C21—C22 | 176.1 (3) | C12—C13—C14—C15 | −2.6 (6) |
O2—C26—C25—C24 | −176.0 (3) | C13—C12—N2—C20 | 4.9 (5) |
N1—Pd1—O1—C21 | 159.6 (2) | C13—C14—C15—C16 | −178.0 (4) |
N1—Pd1—N2—C12 | −17.1 (2) | C13—C14—C15—C20 | 0.6 (6) |
N1—Pd1—N2—C20 | 177.1 (3) | C14—C15—C16—C17 | 175.5 (4) |
N1—C2—C3—C4 | −4.2 (5) | C14—C15—C20—C19 | −173.8 (4) |
N1—C2—C12—N2 | −5.2 (4) | C15—C16—C17—C18 | −0.5 (7) |
N1—C2—C12—C13 | 174.3 (3) | C15—C20—C19—C18 | −3.0 (6) |
N1—C10—C5—C4 | −4.2 (5) | C16—C15—C20—C19 | 4.8 (6) |
N1—C10—C5—C6 | 177.1 (3) | C16—C17—C18—C19 | 2.4 (7) |
N1—C10—C9—C8 | −178.5 (3) | C17—C16—C15—C20 | −3.1 (6) |
N2—Pd1—O2—C26 | −161.8 (2) | C17—C18—C19—C20 | −0.7 (7) |
N2—Pd1—N1—C2 | 14.2 (2) | C21—C22—C23—C24 | −0.1 (5) |
N2—Pd1—N1—C10 | −175.1 (3) | C21—C26—C25—C24 | 1.0 (5) |
N2—C12—C2—C3 | 174.0 (3) | C22—C21—C26—C25 | −1.0 (5) |
N2—C12—C13—C14 | −0.2 (5) | C22—C23—C24—C25 | 0.1 (6) |
N2—C20—C15—C14 | 4.1 (5) | C23—C22—C21—C26 | 0.6 (5) |
N2—C20—C15—C16 | −177.2 (3) | C23—C24—C25—C26 | −0.5 (5) |
N2—C20—C19—C18 | 179.1 (4) | C23—C24—C25—C26 | −0.5 (5) |
Symmetry codes: (i) −x, −y, −z+1; (ii) −x, y+1/2, −z+3/2; (iii) −x, −y+1, −z+1; (iv) −x−1, −y, −z+1; (v) −x, y−1/2, −z+3/2. |
Experimental details
Crystal data | |
Chemical formula | [Pd(C6H4O2)(C18H12N2)] |
Mr | 470.81 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 296 |
a, b, c (Å) | 11.042 (2), 9.487 (2), 17.796 (2) |
β (°) | 95.635 (10) |
V (Å3) | 1855.2 (6) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 1.02 |
Crystal size (mm) | 0.20 × 0.15 × 0.10 |
Data collection | |
Diffractometer | Rigaku AFC-5R diffractometer |
Absorption correction | ψ scan (North et al., 1968) |
Tmin, Tmax | 0.832, 0.903 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 4749, 4267, 2996 |
Rint | 0.043 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.032, 0.089, 1.07 |
No. of reflections | 4267 |
No. of parameters | 262 |
No. of restraints | ? |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.47, −0.35 |
Computer programs: MSC/AFC Diffractometer Control Software (Molecular Structure Corporation, 1992), MSC/AFC Diffractometer Control Software, TEXSAN (Molecular Structure Corporation, 2000), SIR97 (Altomare et al., 1999), SHELXL97 (Sheldrick, 1997), ORTEPII (Johnson, 1976).
(I) | (II)i | |
Pd1—O1 | 1.987 (2) | 1.992 (4) |
Pd1—O2 | 1.990 (2) | 1.982 (4) |
Pd1—N1 | 2.055 (3) | 2.039 (4) |
Pd1—N2 | 2.047 (2) | 2.037 (4) |
O1—Pd1—O2 | 83.19 (9) | 83.6 (2) |
O1—Pd1—N1 | 98.19 (10) | 98.4 (2) |
O1—Pd1—N2 | 173.8 (1) | 171.1 (2) |
O2—Pd1—N1 | 172.1 (1) | 174.4 (2) |
O2—Pd1—N2 | 97.49 (10) | 97.0 (2) |
N1—Pd1—N2 | 80.3 (1) | 80.3 (2) |
Note: (i) Okabe et al. (2004). |
A large number of investigations have focused on the design of palladium(II) or platinum(II) complexes because of their biological significance in areas such as antitumor, antimicrovial and antiviral activity (Corbi et al., 2005; Giovagnini et al., 2005).
Palladium complexes with aromatic ligands and cis-square planar coordination geometry has been intensively studied because of their cytotoxic activity (Mansuri-Torshizi et al., 2001; Afrasiabi et al., 2004; Rebolledo et al., 2005; Padhye et al., 2005) or DNA binding properties (Cusumano & Giannetto, 1997; Tercero et al., 2003), which is the principal target in the chemotherapy of tumors (Shehata, 2001; Cusumano & Giannetto, 1997; Neidle et al., 1987).
As an extension of these studies, we have synthesized and determined the crystal structures of a number of cis-coordinated palladium complexes with aromatic ligands including Pd(bpy)(cbdca) and Pb(phen)(cbdca) (Muranishi & Okabe, 2004), Pd(phen)(ca) (Okabe et al., 2003), Pd(bpy)(nad) and Pd(biq)(nad) (Okabe et al., 2004) and Pd(bpy)(ca) (Okabe et al., 2005), where bpy is 2,2'-bipyridine, cbdca is 1,1-cyclobutanedicarboxylate, phen is 1,10-phenanthroline, nad is 2,3-naphthalenediol, biq is biquinoline and ca is catechol or 1,2-benzenediol.
In this study, the title compound, Pd(biq)(ca), (I), has been synthesized and its structure determined. In complex (I), the central Pd atom has a distorted cis-square planar coordination geometry arising from the two N atoms of biq and the two O atoms of ca (Fig. 1).
The overall structure is not planar and resembles that of Pd(biq)(nad), (II) (Okabe et al., 2004), which has the same biq moiety as (I) and two analogous anionic O atoms of the 2,3-naphthalenediol moiety. The dihedral angle between the biq and ca best planes in (I) is 136.23 (8)°, with an equivalent value for (II) of 148.73 (7)° (where a dihedral angle of 180° indicates a flat structure). This shows that the distortion of (I) from the planar conformation is larger than in (II).
The Pd—X (X = N, O) bond lengths and angles in (I) are similar to those of (II) (Table 1). This resemblance suggests similar coordination bond strength in both complexes.