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The title compound, C19H18N4O8, belonging to the pyrimidinyloxybenzoic acid family, exhibits herbicidal properties. The crystal structure is stabilized by C—H...O and O—H...N inter­molecular hydrogen bonds.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S160053680502859X/ob6586sup1.cif
Contains datablocks global, I

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S160053680502859X/ob6586Isup2.hkl
Contains datablock I

CCDC reference: 287686

Key indicators

  • Single-crystal X-ray study
  • T = 290 K
  • Mean [sigma](C-C) = 0.004 Å
  • R factor = 0.065
  • wR factor = 0.158
  • Data-to-parameter ratio = 13.3

checkCIF/PLATON results

No syntax errors found



Alert level B PLAT022_ALERT_3_B Ratio Unique / Expected Reflections too Low .... 0.89
Alert level C PLAT220_ALERT_2_C Large Non-Solvent C Ueq(max)/Ueq(min) ... 2.60 Ratio
0 ALERT level A = In general: serious problem 1 ALERT level B = Potentially serious problem 1 ALERT level C = Check and explain 0 ALERT level G = General alerts; check 0 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 1 ALERT type 2 Indicator that the structure model may be wrong or deficient 1 ALERT type 3 Indicator that the structure quality may be low 0 ALERT type 4 Improvement, methodology, query or suggestion

Comment top

An important aspect in the rational design of bioactive molecules involves relating chemical structure to biological activity (Lewis et al., 1991). The conformation of the molecule is found to influence the levels of biological activity. Correlation of the results obtained from X-ray crystallography with biological activity has aided in the chemical design of few active agrochemicals. The activity of a series of triazolyl ketone herbicides (Anderson et al., 1983) has been investigated along with the fungicidal activities of N-phenyl succinamides (Zenei et al., 1988). In this paper, we report the structure of the title compound, (I), which is a selective, systemic post-emergence herbicide used for the control of a wide range of weeds.

Fig. 1 shows an ORTEP-3 (Farrugia, 1997) view of the compound. The methoxy groups move away from each other to minimize steric repulsions between the non-bonded H atoms, but lie nearly on the plane of the pyrimidine ring. The pyrimidine rings (C1/N1/C3–C5/N2 and C22/N3/C10–C12/N4) make dihedral angles of 85.2 (1) and 60.9 (1)°, respectively, with the plane of the benzene ring. The difference in bond lengths involving atoms O1 and O10 indicates that the electronic environment is different (Table 1). The H atom of the carboxylic group is not involved in the formation of `classical carboxylic acid dimers'. Instead it forms a hydrogen bond (Table 2 and Fig. 2) with the pyrimidiyl N atom, forming ring dimers [Etter's symbol R22(16); Bernstein et al., 1995]. Atom O7 is also involved in the formation of dimeric motifs via the C—H···O interactions [Etter's symbol R22(20)].

Experimental top

Compound (I) was supplied by Rallis India Limited. Crystals were grown by slow evaporation from a solution of methanol at 278 K.

Refinement top

The H atoms bonded to the C atoms of the methyl groups were positioned geometrically and allowed to ride on the parent atom, with C—H = 0.96 Å and Uiso = 1.5Ueq(Cmethyl). The remaining H atoms were located in difference Fourier maps and refined isotropically.

Computing details top

Data collection: SMART (Bruker, 2000); cell refinement: SAINT (Bruker, 2000); data reduction: SAINT; program(s) used to solve structure: SIR92 (Altomare, 1993); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and CAMERON (Watkin, 1993); software used to prepare material for publication: PLATON (Spek, 2003).

Figures top
[Figure 1] Fig. 1. Molecular structure of (I), showing 50% ellipsoidal probability.
[Figure 2] Fig. 2. Packing diagram of (I). Dotted lines indicate O—H···N and C—H···O interactions. H atoms have been omitted for clarity, except for those involved in the hydrogen bonds. The symbols ' and " refer to the symmetry codes (1 − x, −y, 1 − z) and (−x, 1 − y, 1 − z), respectively.
2,6-bis[(4,6-dimethoxypyrimidin-2-yl)oxy]benzoic acid top
Crystal data top
C19H18N4O8Z = 2
Mr = 430.37F(000) = 448
Triclinic, P1Dx = 1.420 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.7779 (12) ÅCell parameters from 765 reflections
b = 8.2973 (13) Åθ = 1.4–25.4°
c = 16.883 (3) ŵ = 0.11 mm1
α = 87.899 (3)°T = 290 K
β = 79.054 (3)°Plate, colorless
γ = 70.276 (3)°0.40 × 0.30 × 0.04 mm
V = 1006.5 (3) Å3
Data collection top
Bruker SMART CCD area-detector
diffractometer
4089 independent reflections
Radiation source: fine-focus sealed tube2777 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.023
ϕ and ω scansθmax = 27.4°, θmin = 1.2°
Absorption correction: multi-scan
(SADABS; Sheldrick, 1996)
h = 109
Tmin = 0.947, Tmax = 0.996k = 1010
8103 measured reflectionsl = 2121
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.065Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.158H atoms treated by a mixture of independent and constrained refinement
S = 1.14 w = 1/[σ2(Fo2) + (0.072P)2]
where P = (Fo2 + 2Fc2)/3
4089 reflections(Δ/σ)max < 0.001
308 parametersΔρmax = 0.22 e Å3
0 restraintsΔρmin = 0.19 e Å3
Crystal data top
C19H18N4O8γ = 70.276 (3)°
Mr = 430.37V = 1006.5 (3) Å3
Triclinic, P1Z = 2
a = 7.7779 (12) ÅMo Kα radiation
b = 8.2973 (13) ŵ = 0.11 mm1
c = 16.883 (3) ÅT = 290 K
α = 87.899 (3)°0.40 × 0.30 × 0.04 mm
β = 79.054 (3)°
Data collection top
Bruker SMART CCD area-detector
diffractometer
4089 independent reflections
Absorption correction: multi-scan
(SADABS; Sheldrick, 1996)
2777 reflections with I > 2σ(I)
Tmin = 0.947, Tmax = 0.996Rint = 0.023
8103 measured reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0650 restraints
wR(F2) = 0.158H atoms treated by a mixture of independent and constrained refinement
S = 1.14Δρmax = 0.22 e Å3
4089 reflectionsΔρmin = 0.19 e Å3
308 parameters
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
O10.2858 (3)0.3742 (2)0.17593 (11)0.0484 (5)
O20.5676 (3)0.1994 (3)0.10678 (14)0.0718 (7)
O30.8314 (3)0.2081 (3)0.00026 (14)0.0743 (7)
O40.3898 (3)0.1557 (2)0.47309 (13)0.0586 (6)
O50.0369 (3)0.2235 (3)0.69249 (12)0.0590 (6)
O60.3037 (3)0.4375 (3)0.39396 (12)0.0509 (5)
O70.4594 (2)0.2207 (2)0.30927 (12)0.0494 (5)
O100.0540 (2)0.3640 (2)0.44452 (10)0.0418 (5)
N10.4145 (3)0.0856 (3)0.14356 (13)0.0460 (6)
N20.5543 (3)0.2926 (3)0.09031 (13)0.0456 (6)
N30.1692 (3)0.0995 (3)0.45291 (13)0.0385 (5)
N40.0011 (3)0.2845 (3)0.56659 (13)0.0380 (5)
C10.4248 (4)0.2410 (3)0.13521 (16)0.0418 (6)
C30.5609 (4)0.0349 (4)0.10135 (18)0.0518 (7)
C40.7065 (5)0.0022 (4)0.0524 (2)0.0619 (9)
C50.6946 (4)0.1674 (4)0.04872 (17)0.0522 (8)
C70.4196 (6)0.2354 (4)0.1598 (2)0.0848 (12)
C80.8070 (4)0.3865 (4)0.0098 (2)0.0731 (10)
C100.2601 (3)0.0086 (3)0.50329 (17)0.0420 (7)
C110.2290 (4)0.0197 (3)0.58577 (18)0.0442 (7)
C120.0934 (4)0.1704 (3)0.61511 (16)0.0413 (6)
C140.4240 (4)0.1888 (4)0.3875 (2)0.0625 (9)
C150.1209 (5)0.1149 (5)0.75242 (19)0.0781 (11)
C160.1349 (4)0.3477 (3)0.22807 (16)0.0402 (6)
C170.0198 (4)0.3562 (4)0.1976 (2)0.0535 (8)
C180.1801 (4)0.3598 (4)0.2497 (2)0.0566 (8)
C190.0298 (3)0.3480 (3)0.36088 (15)0.0343 (6)
C200.1362 (3)0.3419 (3)0.30983 (15)0.0326 (6)
C210.3135 (3)0.3277 (3)0.33788 (15)0.0364 (6)
C220.0454 (3)0.2411 (3)0.48922 (16)0.0356 (6)
C230.1862 (4)0.3574 (3)0.33159 (19)0.0448 (7)
H40.805 (4)0.086 (4)0.0210 (19)0.067 (9)*
H7A0.41090.19500.21350.127*
H7B0.44350.35670.15980.127*
H7C0.30470.17860.14180.127*
H80.286 (4)0.364 (4)0.2286 (18)0.069 (9)*
H8A0.69920.44050.03330.110*
H8B0.91470.39830.04460.110*
H8C0.79070.44010.04180.110*
H90.015 (4)0.359 (3)0.1415 (17)0.051 (8)*
H100.293 (4)0.359 (3)0.3689 (16)0.046 (8)*
H110.298 (4)0.058 (4)0.6181 (16)0.050 (8)*
H14A0.31840.20750.37310.094*
H14B0.53210.28880.37280.094*
H14C0.44440.09230.35940.094*
H15A0.09500.00970.75270.117*
H15B0.07110.17150.80450.117*
H15C0.25300.09080.74020.117*
H1000.194 (6)0.528 (6)0.402 (2)0.115 (15)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
O10.0521 (12)0.0422 (11)0.0435 (11)0.0152 (9)0.0075 (9)0.0009 (9)
O20.0800 (16)0.0445 (12)0.0836 (17)0.0157 (11)0.0063 (14)0.0039 (11)
O30.0437 (12)0.0780 (16)0.0813 (16)0.0083 (11)0.0091 (11)0.0226 (13)
O40.0516 (12)0.0384 (11)0.0688 (15)0.0024 (9)0.0033 (11)0.0005 (10)
O50.0703 (14)0.0553 (12)0.0413 (12)0.0083 (10)0.0111 (10)0.0038 (10)
O60.0384 (11)0.0491 (12)0.0632 (14)0.0083 (9)0.0136 (10)0.0153 (10)
O70.0265 (10)0.0509 (11)0.0612 (13)0.0027 (9)0.0026 (9)0.0088 (9)
O100.0368 (10)0.0392 (10)0.0383 (11)0.0022 (8)0.0004 (8)0.0034 (8)
N10.0488 (14)0.0449 (14)0.0428 (14)0.0146 (11)0.0063 (11)0.0024 (11)
N20.0396 (13)0.0523 (14)0.0423 (13)0.0134 (11)0.0064 (11)0.0080 (11)
N30.0323 (12)0.0326 (11)0.0472 (13)0.0094 (9)0.0020 (10)0.0015 (10)
N40.0381 (12)0.0353 (11)0.0379 (13)0.0111 (9)0.0032 (10)0.0030 (9)
C10.0447 (16)0.0452 (16)0.0340 (15)0.0119 (13)0.0097 (12)0.0031 (12)
C30.0554 (19)0.0443 (17)0.0540 (19)0.0106 (14)0.0174 (16)0.0008 (14)
C40.0474 (19)0.056 (2)0.064 (2)0.0004 (16)0.0003 (17)0.0003 (17)
C50.0386 (16)0.062 (2)0.0477 (18)0.0082 (14)0.0073 (14)0.0099 (15)
C70.109 (3)0.059 (2)0.096 (3)0.043 (2)0.016 (3)0.003 (2)
C80.058 (2)0.084 (3)0.076 (2)0.0272 (19)0.0073 (18)0.029 (2)
C120.0408 (15)0.0413 (15)0.0433 (17)0.0172 (12)0.0063 (13)0.0049 (12)
C190.0319 (14)0.0267 (12)0.0407 (15)0.0065 (10)0.0047 (11)0.0032 (11)
C160.0406 (15)0.0349 (14)0.0417 (16)0.0109 (11)0.0035 (13)0.0049 (11)
C100.0322 (14)0.0323 (14)0.0593 (19)0.0109 (11)0.0036 (13)0.0039 (13)
C110.0434 (16)0.0387 (15)0.0505 (19)0.0117 (12)0.0151 (14)0.0139 (13)
C140.057 (2)0.0458 (17)0.072 (2)0.0094 (15)0.0066 (17)0.0172 (15)
C150.086 (3)0.087 (3)0.049 (2)0.011 (2)0.0185 (18)0.0160 (18)
C170.057 (2)0.064 (2)0.0436 (18)0.0206 (15)0.0203 (16)0.0095 (15)
C180.0455 (18)0.065 (2)0.070 (2)0.0221 (15)0.0291 (17)0.0087 (16)
C200.0305 (13)0.0270 (12)0.0381 (15)0.0068 (10)0.0068 (11)0.0018 (10)
C210.0313 (14)0.0370 (14)0.0402 (15)0.0117 (11)0.0049 (12)0.0013 (12)
C220.0296 (13)0.0334 (13)0.0440 (17)0.0128 (11)0.0046 (11)0.0063 (11)
C230.0325 (15)0.0410 (15)0.062 (2)0.0140 (12)0.0100 (15)0.0078 (14)
Geometric parameters (Å, º) top
O10—C221.357 (3)C19—C231.376 (4)
O10—C191.394 (3)C16—C171.375 (4)
O6—C211.312 (3)C10—C111.382 (4)
O6—H1000.92 (4)C12—C111.370 (4)
O1—C11.353 (3)C5—C41.379 (4)
O1—C161.403 (3)C18—C171.374 (4)
O7—C211.206 (3)C18—C231.374 (4)
O2—C31.349 (3)C18—H80.95 (3)
O2—C71.427 (4)C4—C31.370 (4)
O3—C51.344 (3)C4—H40.93 (3)
O3—C81.435 (4)C17—H90.94 (3)
O4—C101.337 (3)C14—H14A0.9600
O4—C141.438 (4)C14—H14B0.9600
N4—C221.317 (3)C14—H14C0.9600
N4—C121.345 (3)C11—H110.93 (3)
N1—C11.319 (3)C8—H8A0.9600
N1—C31.334 (3)C8—H8B0.9600
N3—C221.322 (3)C8—H8C0.9600
N3—C101.331 (3)C15—H15A0.9600
N2—C11.323 (3)C15—H15B0.9600
N2—C51.327 (3)C15—H15C0.9600
O5—C121.337 (3)C7—H7A0.9600
O5—C151.432 (3)C7—H7B0.9600
C20—C161.381 (3)C7—H7C0.9600
C20—C191.396 (3)C23—H100.94 (3)
C20—C211.508 (3)
C22—O10—C19122.48 (19)C5—C4—H4120.6 (19)
C21—O6—H100113 (3)N1—C3—O2118.6 (3)
C1—O1—C16120.7 (2)N1—C3—C4124.0 (3)
C3—O2—C7117.8 (3)O2—C3—C4117.4 (3)
C5—O3—C8117.6 (2)C18—C17—C16119.5 (3)
C10—O4—C14118.1 (2)C18—C17—H9120.6 (17)
C22—N4—C12115.4 (2)C16—C17—H9119.8 (17)
C1—N1—C3113.4 (2)O4—C14—H14A109.5
C22—N3—C10113.4 (2)O4—C14—H14B109.5
C1—N2—C5114.1 (2)H14A—C14—H14B109.5
C12—O5—C15118.7 (2)O4—C14—H14C109.5
C16—C20—C19116.5 (2)H14A—C14—H14C109.5
C16—C20—C21118.9 (2)H14B—C14—H14C109.5
C19—C20—C21124.6 (2)C12—C11—C10115.6 (2)
N1—C1—N2129.6 (3)C12—C11—H11123.1 (17)
N1—C1—O1119.1 (2)C10—C11—H11121.2 (17)
N2—C1—O1111.3 (2)O3—C8—H8A109.5
C23—C19—O10115.5 (2)O3—C8—H8B109.5
C23—C19—C20122.0 (2)H8A—C8—H8B109.5
O10—C19—C20122.2 (2)O3—C8—H8C109.5
C17—C16—C20122.4 (3)H8A—C8—H8C109.5
C17—C16—O1118.7 (2)H8B—C8—H8C109.5
C20—C16—O1118.1 (2)O5—C15—H15A109.5
N3—C10—O4118.6 (3)O5—C15—H15B109.5
N3—C10—C11124.5 (2)H15A—C15—H15B109.5
O4—C10—C11117.0 (2)O5—C15—H15C109.5
O7—C21—O6121.1 (2)H15A—C15—H15C109.5
O7—C21—C20121.3 (2)H15B—C15—H15C109.5
O6—C21—C20117.6 (2)O2—C7—H7A109.5
O5—C12—N4111.6 (2)O2—C7—H7B109.5
O5—C12—C11126.3 (2)H7A—C7—H7B109.5
N4—C12—C11122.1 (3)O2—C7—H7C109.5
N2—C5—O3118.4 (3)H7A—C7—H7C109.5
N2—C5—C4123.2 (3)H7B—C7—H7C109.5
O3—C5—C4118.4 (3)N4—C22—N3129.0 (2)
C17—C18—C23120.1 (3)N4—C22—O10111.6 (2)
C17—C18—H8119.5 (19)N3—C22—O10119.4 (2)
C23—C18—H8120.4 (19)C18—C23—C19119.5 (3)
C3—C4—C5115.6 (3)C18—C23—H10122.5 (16)
C3—C4—H4123.7 (19)C19—C23—H10118.0 (16)
C3—N1—C1—N22.0 (4)C22—N4—C12—C110.2 (4)
C3—N1—C1—O1179.1 (2)C1—N2—C5—O3178.9 (2)
C5—N2—C1—N10.9 (4)C1—N2—C5—C40.7 (4)
C5—N2—C1—O1179.9 (2)C8—O3—C5—N26.4 (4)
C16—O1—C1—N11.7 (3)C8—O3—C5—C4173.2 (3)
C16—O1—C1—N2179.2 (2)N2—C5—C4—C31.1 (5)
C22—O10—C19—C23121.8 (2)O3—C5—C4—C3178.5 (3)
C22—O10—C19—C2065.0 (3)C1—N1—C3—O2178.5 (2)
C16—C20—C19—C230.7 (3)C1—N1—C3—C41.5 (4)
C21—C20—C19—C23178.6 (2)C7—O2—C3—N12.0 (4)
C16—C20—C19—O10172.1 (2)C7—O2—C3—C4177.9 (3)
C21—C20—C19—O108.6 (3)C5—C4—C3—N10.1 (5)
C19—C20—C16—C171.1 (4)C5—C4—C3—O2179.8 (3)
C21—C20—C16—C17178.3 (2)C23—C18—C17—C160.9 (5)
C19—C20—C16—O1168.2 (2)C20—C16—C17—C180.3 (4)
C21—C20—C16—O112.4 (3)O1—C16—C17—C18169.0 (3)
C1—O1—C16—C1791.0 (3)O5—C12—C11—C10178.6 (3)
C1—O1—C16—C2099.3 (3)N4—C12—C11—C101.1 (4)
C22—N3—C10—O4179.5 (2)N3—C10—C11—C120.5 (4)
C22—N3—C10—C111.0 (4)O4—C10—C11—C12179.1 (2)
C14—O4—C10—N30.0 (4)C12—N4—C22—N31.6 (4)
C14—O4—C10—C11179.6 (3)C12—N4—C22—O10178.98 (19)
C16—C20—C21—O750.1 (3)C10—N3—C22—N42.1 (4)
C19—C20—C21—O7129.3 (3)C10—N3—C22—O10178.5 (2)
C16—C20—C21—O6129.1 (3)C19—O10—C22—N4179.9 (2)
C19—C20—C21—O651.6 (3)C19—O10—C22—N30.6 (3)
C15—O5—C12—N4178.7 (3)C17—C18—C23—C191.2 (4)
C15—O5—C12—C111.1 (4)O10—C19—C23—C18173.6 (2)
C22—N4—C12—O5179.6 (2)C20—C19—C23—C180.4 (4)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
C11—H11···O7i0.93 (3)2.43 (3)3.332 (3)164 (2)
O6—H100···N4ii0.92 (4)1.77 (4)2.675 (2)168 (4)
Symmetry codes: (i) x+1, y, z+1; (ii) x, y+1, z+1.

Experimental details

Crystal data
Chemical formulaC19H18N4O8
Mr430.37
Crystal system, space groupTriclinic, P1
Temperature (K)290
a, b, c (Å)7.7779 (12), 8.2973 (13), 16.883 (3)
α, β, γ (°)87.899 (3), 79.054 (3), 70.276 (3)
V3)1006.5 (3)
Z2
Radiation typeMo Kα
µ (mm1)0.11
Crystal size (mm)0.40 × 0.30 × 0.04
Data collection
DiffractometerBruker SMART CCD area-detector
diffractometer
Absorption correctionMulti-scan
(SADABS; Sheldrick, 1996)
Tmin, Tmax0.947, 0.996
No. of measured, independent and
observed [I > 2σ(I)] reflections
8103, 4089, 2777
Rint0.023
(sin θ/λ)max1)0.648
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.065, 0.158, 1.14
No. of reflections4089
No. of parameters308
H-atom treatmentH atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å3)0.22, 0.19

Computer programs: SMART (Bruker, 2000), SAINT (Bruker, 2000), SAINT, SIR92 (Altomare, 1993), SHELXL97 (Sheldrick, 1997), ORTEP-3 for Windows (Farrugia, 1997) and CAMERON (Watkin, 1993), PLATON (Spek, 2003).

Selected geometric parameters (Å, º) top
O10—C221.357 (3)O1—C11.353 (3)
O10—C191.394 (3)O1—C161.403 (3)
O6—C211.312 (3)O7—C211.206 (3)
C16—O1—C1—N11.7 (3)C15—O5—C12—N4178.7 (3)
C22—O10—C19—C23121.8 (2)C8—O3—C5—N26.4 (4)
C1—O1—C16—C1791.0 (3)C7—O2—C3—N12.0 (4)
C14—O4—C10—N30.0 (4)C19—O10—C22—N30.6 (3)
C19—C20—C21—O7129.3 (3)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
C11—H11···O7i0.93 (3)2.43 (3)3.332 (3)164 (2)
O6—H100···N4ii0.92 (4)1.77 (4)2.675 (2)168 (4)
Symmetry codes: (i) x+1, y, z+1; (ii) x, y+1, z+1.
 

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