Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536805041966/lh6564sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536805041966/lh6564Iasup2.hkl |
CCDC reference: 296612
Key indicators
- Single-crystal X-ray study
- T = 294 K
- Mean (C-C) = 0.003 Å
- Disorder in main residue
- R factor = 0.041
- wR factor = 0.112
- Data-to-parameter ratio = 12.2
checkCIF/PLATON results
No syntax errors found
Alert level B PLAT213_ALERT_2_B Atom C17' has ADP max/min Ratio ............. 4.20 oblate PLAT220_ALERT_2_B Large Non-Solvent C Ueq(max)/Ueq(min) ... 4.04 Ratio PLAT432_ALERT_2_B Short Inter X...Y Contact C29 .. F6' .. 2.86 Ang.
Alert level C ABSTM02_ALERT_3_C The ratio of expected to reported Tmax/Tmin(RR') is < 0.90 Tmin and Tmax reported: 0.728 0.970 Tmin(prime) and Tmax expected: 0.936 0.973 RR(prime) = 0.781 Please check that your absorption correction is appropriate. PLAT061_ALERT_3_C Tmax/Tmin Range Test RR' too Large ............. 0.78 PLAT242_ALERT_2_C Check Low Ueq as Compared to Neighbors for C14 PLAT242_ALERT_2_C Check Low Ueq as Compared to Neighbors for C15 PLAT242_ALERT_2_C Check Low Ueq as Compared to Neighbors for C16' PLAT301_ALERT_3_C Main Residue Disorder ......................... 23.00 Perc. PLAT366_ALERT_2_C Short? C(sp?)-C(sp?) Bond C10 - C11 ... 1.37 Ang. PLAT366_ALERT_2_C Short? C(sp?)-C(sp?) Bond C18 - C19 ... 1.37 Ang.
0 ALERT level A = In general: serious problem 3 ALERT level B = Potentially serious problem 8 ALERT level C = Check and explain 0 ALERT level G = General alerts; check 0 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 8 ALERT type 2 Indicator that the structure model may be wrong or deficient 3 ALERT type 3 Indicator that the structure quality may be low 0 ALERT type 4 Improvement, methodology, query or suggestion
The title compound was originally derived from 2-methylthiophene (I). 3-Bromo-2-methyl-5-(3-methylphenyl)thiophene, (2) (3.57 g, 13.4 mmol), in 83.7% yield was synthesized by reacting (I) (3.53 g, 16.0 mmol) (Pu, Liu et al., 2005) with 3-bromo-1-methylbenzene (2.74 g, 16.0 mmol) in the presence of Pd(PPh3)4 (0.5 g) and Na2CO3 (2 mol l−1, 30 mmol) in tetrahydrofuran (THF, 80 ml) for 16 h at 343 K. To a stirred THF solution (60 ml) of (2) (3.57 g, 13.4 mmol) 5.4 ml of n-BuLi/hexane solution (2.5 mol l−1, 13.5 mmol) was slowly added at 195 K under a nitrogen atmosphere. 30 min later, octafluorocyclopentene (0.91 ml, 6.7 mmol) was added and the mixture was stirred for 2 h. The reaction mixture was extracted with ether and evaporated in vacuo, then purifed by column chromatography (oil ether) to give the title compound (1.25 g, 2.3 mmol) in 34.3% yield. The compound crystallized from hexane at room temperature and produced single crystals suitable for X-ray analysis. The structure of (Ia) was confirmed by melting point, element analysis and NMR (m.p. 417 K). Analysis calculated for C29H22F6S2: C 63.49, H 4.04%; found: C 63.53, H 4.09%; 1H NMR (400 MHz, CDCl3): δ 1.948 (s, 6H, –CH3), 2.373 (s, 6H, –CH3), 6.720 (s, 2H, thiophene-H), 7.049–7.127 (m, 4H, ben-H), 7.288 (s, 2H, ben-H), 7.338–7.380 (t, 2H, J = 8.4 Hz, ben-H); 19F NMR (400 MHz, CDCl3): δ 109.96 (4 F), 131.79 (2 F).
An intermediate stage in the refinement, it was obvious from electron-density maps that the hexafluorocyclopentene ring atoms, and hence the F atom substitutents, were disordered over two sites. The site occupancies refined to 0.758 (5):0.242 (5). All H atoms were placed in calculated positions, with C—H distances of 0.93 Å (aromatic) and 0.96 Å (CH3). They were included in the refinement in the riding-model approximation, with Uiso(H) = 1.2Ueq(C) or 1.5Ueq(C) for methyl C atoms.
Data collection: SMART (Bruker, 1997); cell refinement: SAINT (Bruker, 1997); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: SHELXTL (Bruker, 1997); software used to prepare material for publication: SHELXTL.
C29H22F6S2 | F(000) = 1128 |
Mr = 548.59 | Dx = 1.432 Mg m−3 |
Monoclinic, P21/n | Melting point: 417 K |
Hall symbol: -P 2yn | Mo Kα radiation, λ = 0.71073 Å |
a = 11.9825 (16) Å | Cell parameters from 3825 reflections |
b = 9.2708 (12) Å | θ = 2.4–25.3° |
c = 22.935 (3) Å | µ = 0.27 mm−1 |
β = 92.934 (2)° | T = 294 K |
V = 2544.4 (6) Å3 | Prism, colorless |
Z = 4 | 0.24 × 0.22 × 0.10 mm |
Bruker SMART CCD area-detector diffractometer | 5176 independent reflections |
Radiation source: fine-focus sealed tube | 3308 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.033 |
ϕ and ω scans | θmax = 26.4°, θmin = 1.8° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −14→14 |
Tmin = 0.728, Tmax = 0.970 | k = −11→11 |
13927 measured reflections | l = −13→28 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.041 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.112 | H-atom parameters constrained |
S = 1.02 | w = 1/[σ2(Fo2) + (0.0506P)2 + 0.4455P] where P = (Fo2 + 2Fc2)/3 |
5176 reflections | (Δ/σ)max = 0.003 |
426 parameters | Δρmax = 0.22 e Å−3 |
158 restraints | Δρmin = −0.18 e Å−3 |
C29H22F6S2 | V = 2544.4 (6) Å3 |
Mr = 548.59 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 11.9825 (16) Å | µ = 0.27 mm−1 |
b = 9.2708 (12) Å | T = 294 K |
c = 22.935 (3) Å | 0.24 × 0.22 × 0.10 mm |
β = 92.934 (2)° |
Bruker SMART CCD area-detector diffractometer | 5176 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 3308 reflections with I > 2σ(I) |
Tmin = 0.728, Tmax = 0.970 | Rint = 0.033 |
13927 measured reflections |
R[F2 > 2σ(F2)] = 0.041 | 158 restraints |
wR(F2) = 0.112 | H-atom parameters constrained |
S = 1.02 | Δρmax = 0.22 e Å−3 |
5176 reflections | Δρmin = −0.18 e Å−3 |
426 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
S1 | 0.15810 (5) | 0.37494 (7) | 0.21653 (3) | 0.05074 (19) | |
S2 | 0.47119 (5) | 0.60684 (6) | 0.39871 (3) | 0.04938 (18) | |
C1 | −0.0699 (2) | 0.4819 (3) | 0.16456 (12) | 0.0666 (8) | |
H1 | −0.0040 | 0.4827 | 0.1448 | 0.080* | |
C2 | −0.1673 (3) | 0.5350 (4) | 0.13787 (14) | 0.0807 (9) | |
H2 | −0.1666 | 0.5711 | 0.1001 | 0.097* | |
C3 | −0.2643 (2) | 0.5352 (3) | 0.16624 (14) | 0.0715 (8) | |
H3 | −0.3286 | 0.5736 | 0.1478 | 0.086* | |
C4 | −0.2690 (2) | 0.4798 (3) | 0.22158 (12) | 0.0611 (7) | |
C5 | −0.3776 (2) | 0.4736 (5) | 0.25194 (14) | 0.1013 (13) | |
H5A | −0.3850 | 0.5586 | 0.2753 | 0.152* | |
H5B | −0.3781 | 0.3897 | 0.2765 | 0.152* | |
H5C | −0.4388 | 0.4685 | 0.2233 | 0.152* | |
C6 | −0.17088 (19) | 0.4252 (3) | 0.24850 (11) | 0.0554 (7) | |
H6 | −0.1728 | 0.3863 | 0.2858 | 0.066* | |
C7 | −0.07027 (18) | 0.4275 (2) | 0.22081 (10) | 0.0457 (6) | |
C8 | 0.03302 (17) | 0.3727 (2) | 0.25089 (10) | 0.0426 (5) | |
C9 | 0.05030 (17) | 0.3199 (2) | 0.30580 (10) | 0.0436 (6) | |
H9 | −0.0069 | 0.3096 | 0.3314 | 0.052* | |
C10 | 0.16291 (17) | 0.2816 (2) | 0.32097 (9) | 0.0395 (5) | |
C11 | 0.23243 (17) | 0.3060 (2) | 0.27637 (10) | 0.0430 (5) | |
C12 | 0.35557 (18) | 0.2826 (3) | 0.27291 (11) | 0.0570 (7) | |
H12A | 0.3947 | 0.3696 | 0.2839 | 0.085* | |
H12B | 0.3718 | 0.2570 | 0.2337 | 0.085* | |
H12C | 0.3791 | 0.2061 | 0.2990 | 0.085* | |
F1 | 0.0237 (4) | 0.1225 (6) | 0.4050 (2) | 0.0666 (11) | 0.758 (5) |
F2 | 0.1244 (6) | −0.0134 (8) | 0.3647 (3) | 0.091 (2) | 0.758 (5) |
F3 | 0.1916 (3) | −0.0709 (4) | 0.4771 (2) | 0.1022 (17) | 0.758 (5) |
F4 | 0.1286 (2) | 0.1363 (4) | 0.50310 (10) | 0.0931 (12) | 0.758 (5) |
F5 | 0.3797 (3) | 0.0368 (3) | 0.44727 (16) | 0.0689 (9) | 0.758 (5) |
F6 | 0.3384 (3) | 0.1923 (4) | 0.51272 (15) | 0.0675 (9) | 0.758 (5) |
C13 | 0.201 (3) | 0.221 (3) | 0.3780 (10) | 0.0396 (7) | 0.758 (5) |
C14 | 0.1346 (6) | 0.0991 (9) | 0.4017 (3) | 0.0469 (7) | 0.758 (5) |
C15 | 0.1861 (5) | 0.0684 (5) | 0.4627 (3) | 0.0566 (14) | 0.758 (5) |
C16 | 0.3017 (5) | 0.1347 (8) | 0.4612 (3) | 0.051 (2) | 0.758 (5) |
C17 | 0.2947 (5) | 0.2433 (8) | 0.4127 (4) | 0.035 (2) | 0.758 (5) |
F1' | 0.0409 (13) | 0.1545 (18) | 0.4253 (6) | 0.068 (4) | 0.242 (5) |
F2' | 0.1508 (16) | −0.032 (2) | 0.3748 (9) | 0.055 (4) | 0.242 (5) |
F3' | 0.2558 (8) | −0.0886 (7) | 0.4328 (4) | 0.087 (3) | 0.242 (5) |
F4' | 0.1544 (9) | 0.0021 (14) | 0.4978 (4) | 0.080 (3) | 0.242 (5) |
F5' | 0.3979 (10) | 0.0817 (14) | 0.4742 (6) | 0.090 (4) | 0.242 (5) |
F6' | 0.2793 (12) | 0.2141 (14) | 0.5145 (5) | 0.091 (4) | 0.242 (5) |
C13' | 0.196 (8) | 0.214 (10) | 0.378 (3) | 0.0396 (7) | 0.242 (5) |
C14' | 0.1332 (17) | 0.092 (3) | 0.4045 (10) | 0.0469 (7) | 0.242 (5) |
C15' | 0.2157 (15) | 0.0385 (13) | 0.4524 (7) | 0.053 (5) | 0.242 (5) |
C16' | 0.3027 (12) | 0.1574 (19) | 0.4618 (7) | 0.038 (7) | 0.242 (5) |
C17' | 0.2772 (15) | 0.267 (2) | 0.4143 (12) | 0.025 (5) | 0.242 (5) |
C18 | 0.37348 (17) | 0.3654 (2) | 0.41034 (9) | 0.0387 (5) | |
C19 | 0.35007 (17) | 0.5062 (2) | 0.39683 (9) | 0.0401 (5) | |
C20 | 0.23997 (18) | 0.5777 (3) | 0.38399 (12) | 0.0537 (6) | |
H20A | 0.2196 | 0.5690 | 0.3431 | 0.081* | |
H20B | 0.2454 | 0.6779 | 0.3943 | 0.081* | |
H20C | 0.1841 | 0.5323 | 0.4063 | 0.081* | |
C21 | 0.49003 (17) | 0.3411 (2) | 0.42248 (9) | 0.0431 (5) | |
H21 | 0.5192 | 0.2513 | 0.4330 | 0.052* | |
C22 | 0.55435 (17) | 0.4601 (2) | 0.41735 (10) | 0.0422 (5) | |
C23 | 0.67728 (17) | 0.4702 (3) | 0.42400 (10) | 0.0435 (6) | |
C24 | 0.73606 (19) | 0.3696 (3) | 0.45813 (11) | 0.0519 (6) | |
H24 | 0.6976 | 0.2991 | 0.4779 | 0.062* | |
C25 | 0.8514 (2) | 0.3735 (3) | 0.46294 (12) | 0.0600 (7) | |
H25 | 0.8903 | 0.3055 | 0.4858 | 0.072* | |
C26 | 0.9084 (2) | 0.4764 (3) | 0.43429 (11) | 0.0563 (7) | |
H26 | 0.9861 | 0.4772 | 0.4378 | 0.068* | |
C27 | 0.85363 (19) | 0.5793 (3) | 0.40029 (11) | 0.0529 (6) | |
C28 | 0.9171 (2) | 0.6920 (3) | 0.36827 (14) | 0.0829 (10) | |
H28A | 0.9406 | 0.7672 | 0.3949 | 0.124* | |
H28B | 0.8697 | 0.7318 | 0.3373 | 0.124* | |
H28C | 0.9814 | 0.6486 | 0.3522 | 0.124* | |
C29 | 0.73755 (19) | 0.5752 (3) | 0.39552 (11) | 0.0499 (6) | |
H29 | 0.6992 | 0.6440 | 0.3728 | 0.060* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0417 (3) | 0.0672 (4) | 0.0435 (4) | 0.0016 (3) | 0.0038 (3) | 0.0029 (3) |
S2 | 0.0374 (3) | 0.0424 (3) | 0.0679 (4) | −0.0033 (3) | −0.0019 (3) | 0.0027 (3) |
C1 | 0.0477 (16) | 0.090 (2) | 0.0613 (18) | −0.0126 (14) | −0.0067 (13) | 0.0223 (16) |
C2 | 0.067 (2) | 0.097 (2) | 0.075 (2) | −0.0121 (17) | −0.0217 (17) | 0.0352 (18) |
C3 | 0.0517 (17) | 0.077 (2) | 0.083 (2) | 0.0031 (14) | −0.0226 (16) | 0.0151 (17) |
C4 | 0.0433 (15) | 0.0761 (19) | 0.0625 (18) | 0.0047 (13) | −0.0109 (13) | −0.0099 (15) |
C5 | 0.0479 (18) | 0.179 (4) | 0.076 (2) | 0.026 (2) | −0.0019 (15) | −0.014 (2) |
C6 | 0.0433 (14) | 0.0768 (18) | 0.0456 (15) | 0.0064 (13) | −0.0029 (11) | −0.0023 (13) |
C7 | 0.0398 (13) | 0.0488 (14) | 0.0477 (14) | −0.0037 (11) | −0.0056 (11) | −0.0002 (11) |
C8 | 0.0357 (12) | 0.0484 (14) | 0.0435 (13) | −0.0029 (10) | −0.0008 (10) | −0.0006 (11) |
C9 | 0.0323 (12) | 0.0532 (14) | 0.0453 (14) | −0.0048 (10) | 0.0022 (10) | 0.0026 (11) |
C10 | 0.0332 (12) | 0.0417 (13) | 0.0432 (13) | −0.0048 (10) | −0.0018 (10) | −0.0003 (10) |
C11 | 0.0353 (12) | 0.0462 (13) | 0.0476 (14) | −0.0020 (10) | 0.0022 (10) | −0.0044 (11) |
C12 | 0.0362 (13) | 0.0751 (18) | 0.0600 (16) | 0.0035 (12) | 0.0067 (11) | 0.0006 (14) |
F1 | 0.0361 (14) | 0.087 (3) | 0.077 (3) | −0.0091 (14) | 0.0054 (16) | 0.021 (2) |
F2 | 0.126 (5) | 0.063 (3) | 0.083 (3) | −0.041 (3) | 0.000 (3) | −0.005 (2) |
F3 | 0.093 (3) | 0.070 (2) | 0.140 (4) | −0.0243 (18) | −0.031 (3) | 0.055 (2) |
F4 | 0.0708 (16) | 0.150 (3) | 0.0604 (15) | −0.0147 (17) | 0.0198 (12) | −0.0004 (16) |
F5 | 0.0603 (17) | 0.0553 (17) | 0.091 (2) | 0.0197 (13) | 0.0009 (15) | 0.0148 (15) |
F6 | 0.0712 (19) | 0.081 (2) | 0.0486 (15) | −0.0176 (17) | −0.0140 (15) | 0.0105 (13) |
C13 | 0.033 (3) | 0.040 (3) | 0.0458 (14) | −0.0022 (12) | 0.0020 (13) | 0.0003 (17) |
C14 | 0.0375 (13) | 0.0483 (17) | 0.0548 (17) | −0.0064 (12) | 0.0018 (11) | 0.0003 (14) |
C15 | 0.044 (3) | 0.056 (3) | 0.071 (3) | −0.006 (2) | 0.007 (2) | 0.019 (3) |
C16 | 0.051 (4) | 0.047 (3) | 0.053 (4) | −0.003 (3) | −0.008 (3) | 0.010 (2) |
C17 | 0.026 (2) | 0.034 (3) | 0.046 (3) | 0.007 (3) | 0.001 (2) | −0.001 (3) |
F1' | 0.050 (6) | 0.080 (7) | 0.077 (8) | 0.005 (5) | 0.020 (5) | 0.014 (5) |
F2' | 0.057 (5) | 0.042 (5) | 0.069 (7) | 0.000 (4) | 0.011 (5) | −0.015 (5) |
F3' | 0.112 (6) | 0.044 (4) | 0.102 (6) | 0.010 (4) | −0.024 (5) | −0.007 (4) |
F4' | 0.085 (6) | 0.095 (8) | 0.059 (5) | −0.025 (6) | 0.009 (4) | 0.029 (5) |
F5' | 0.077 (6) | 0.086 (7) | 0.106 (8) | 0.002 (5) | −0.016 (5) | 0.046 (6) |
F6' | 0.132 (8) | 0.080 (5) | 0.062 (5) | −0.019 (7) | 0.016 (6) | −0.012 (4) |
C13' | 0.033 (3) | 0.040 (3) | 0.0458 (14) | −0.0022 (12) | 0.0020 (13) | 0.0003 (17) |
C14' | 0.0375 (13) | 0.0483 (17) | 0.0548 (17) | −0.0064 (12) | 0.0018 (11) | 0.0003 (14) |
C15' | 0.046 (8) | 0.059 (9) | 0.054 (8) | 0.006 (6) | 0.003 (6) | 0.014 (6) |
C16' | 0.025 (9) | 0.031 (8) | 0.056 (11) | −0.004 (5) | −0.002 (7) | −0.015 (7) |
C17' | 0.030 (8) | 0.016 (6) | 0.028 (7) | 0.019 (5) | 0.003 (5) | 0.005 (5) |
C18 | 0.0321 (11) | 0.0425 (14) | 0.0410 (12) | −0.0014 (9) | −0.0039 (9) | −0.0009 (10) |
C19 | 0.0323 (11) | 0.0437 (13) | 0.0439 (13) | 0.0003 (10) | −0.0002 (10) | 0.0008 (10) |
C20 | 0.0382 (13) | 0.0473 (14) | 0.0751 (18) | 0.0045 (11) | −0.0034 (12) | 0.0033 (13) |
C21 | 0.0375 (12) | 0.0411 (13) | 0.0499 (14) | 0.0008 (10) | −0.0062 (10) | 0.0028 (11) |
C22 | 0.0327 (12) | 0.0482 (14) | 0.0452 (14) | −0.0007 (10) | −0.0010 (10) | −0.0016 (11) |
C23 | 0.0339 (12) | 0.0494 (14) | 0.0468 (14) | −0.0040 (10) | −0.0017 (10) | −0.0060 (11) |
C24 | 0.0377 (13) | 0.0592 (16) | 0.0580 (15) | −0.0071 (11) | −0.0038 (11) | 0.0061 (13) |
C25 | 0.0417 (14) | 0.0698 (18) | 0.0674 (17) | 0.0020 (13) | −0.0077 (12) | 0.0110 (15) |
C26 | 0.0339 (13) | 0.0700 (18) | 0.0645 (17) | −0.0026 (12) | −0.0023 (12) | −0.0041 (14) |
C27 | 0.0395 (14) | 0.0550 (15) | 0.0647 (17) | −0.0043 (12) | 0.0082 (12) | −0.0031 (13) |
C28 | 0.0558 (18) | 0.077 (2) | 0.117 (3) | −0.0102 (15) | 0.0147 (18) | 0.0226 (19) |
C29 | 0.0414 (14) | 0.0513 (15) | 0.0568 (15) | −0.0006 (11) | −0.0008 (11) | 0.0009 (12) |
S1—C11 | 1.720 (2) | C15—C16 | 1.518 (6) |
S1—C8 | 1.729 (2) | C16—C17 | 1.500 (6) |
S2—C19 | 1.724 (2) | C17—C18 | 1.477 (5) |
S2—C22 | 1.727 (2) | F1'—C14' | 1.358 (10) |
C1—C2 | 1.381 (4) | F2'—C14' | 1.355 (10) |
C1—C7 | 1.386 (3) | F3'—C15' | 1.357 (10) |
C1—H1 | 0.9300 | F4'—C15' | 1.348 (10) |
C2—C3 | 1.361 (4) | F5'—C16' | 1.357 (10) |
C2—H2 | 0.9300 | F6'—C16' | 1.359 (10) |
C3—C4 | 1.373 (4) | C13'—C17' | 1.34 (2) |
C3—H3 | 0.9300 | C13'—C14' | 1.514 (10) |
C4—C6 | 1.395 (3) | C14'—C15' | 1.522 (10) |
C4—C5 | 1.508 (4) | C15'—C16' | 1.525 (10) |
C5—H5A | 0.9600 | C16'—C17' | 1.511 (10) |
C5—H5B | 0.9600 | C17'—C18 | 1.476 (10) |
C5—H5C | 0.9600 | C18—C19 | 1.367 (3) |
C6—C7 | 1.391 (3) | C18—C21 | 1.428 (3) |
C6—H6 | 0.9300 | C19—C20 | 1.492 (3) |
C7—C8 | 1.476 (3) | C20—H20A | 0.9600 |
C8—C9 | 1.357 (3) | C20—H20B | 0.9600 |
C9—C10 | 1.421 (3) | C20—H20C | 0.9600 |
C9—H9 | 0.9300 | C21—C22 | 1.355 (3) |
C10—C11 | 1.370 (3) | C21—H21 | 0.9300 |
C10—C13 | 1.475 (5) | C22—C23 | 1.476 (3) |
C10—C13' | 1.478 (10) | C23—C24 | 1.387 (3) |
C11—C12 | 1.498 (3) | C23—C29 | 1.394 (3) |
C12—H12A | 0.9600 | C24—C25 | 1.381 (3) |
C12—H12B | 0.9600 | C24—H24 | 0.9300 |
C12—H12C | 0.9600 | C25—C26 | 1.362 (4) |
F1—C14 | 1.353 (5) | C25—H25 | 0.9300 |
F2—C14 | 1.346 (5) | C26—C27 | 1.377 (3) |
F3—C15 | 1.334 (5) | C26—H26 | 0.9300 |
F4—C15 | 1.341 (6) | C27—C29 | 1.390 (3) |
F5—C16 | 1.353 (6) | C27—C28 | 1.505 (3) |
F6—C16 | 1.349 (5) | C28—H28A | 0.9600 |
C13—C17 | 1.354 (11) | C28—H28B | 0.9600 |
C13—C14 | 1.504 (5) | C28—H28C | 0.9600 |
C14—C15 | 1.526 (6) | C29—H29 | 0.9300 |
C11—S1—C8 | 93.29 (11) | C18—C17—C16 | 122.0 (6) |
C19—S2—C22 | 93.11 (11) | C17'—C13'—C10 | 123 (2) |
C2—C1—C7 | 120.0 (3) | C17'—C13'—C14' | 112.3 (17) |
C2—C1—H1 | 120.0 | C10—C13'—C14' | 124 (2) |
C7—C1—H1 | 120.0 | F2'—C14'—F1' | 134 (2) |
C3—C2—C1 | 120.8 (3) | F2'—C14'—C13' | 110 (5) |
C3—C2—H2 | 119.6 | F1'—C14'—C13' | 105 (6) |
C1—C2—H2 | 119.6 | F2'—C14'—C15' | 88.7 (15) |
C2—C3—C4 | 121.2 (3) | F1'—C14'—C15' | 113.3 (17) |
C2—C3—H3 | 119.4 | C13'—C14'—C15' | 102.5 (17) |
C4—C3—H3 | 119.4 | F4'—C15'—F3' | 104.8 (11) |
C3—C4—C6 | 118.1 (2) | F4'—C15'—C14' | 106.2 (17) |
C3—C4—C5 | 121.2 (3) | F3'—C15'—C14' | 105.6 (13) |
C6—C4—C5 | 120.6 (3) | F4'—C15'—C16' | 117.8 (15) |
C4—C5—H5A | 109.5 | F3'—C15'—C16' | 115.1 (12) |
C4—C5—H5B | 109.5 | C14'—C15'—C16' | 106.4 (13) |
H5A—C5—H5B | 109.5 | F5'—C16'—F6' | 102.9 (12) |
C4—C5—H5C | 109.5 | F5'—C16'—C17' | 129.5 (16) |
H5A—C5—H5C | 109.5 | F6'—C16'—C17' | 109.7 (18) |
H5B—C5—H5C | 109.5 | F5'—C16'—C15' | 102.5 (14) |
C7—C6—C4 | 121.5 (2) | F6'—C16'—C15' | 103.6 (14) |
C7—C6—H6 | 119.2 | C17'—C16'—C15' | 105.9 (10) |
C4—C6—H6 | 119.2 | C13'—C17'—C18 | 137 (3) |
C1—C7—C6 | 118.3 (2) | C13'—C17'—C16' | 108.5 (18) |
C1—C7—C8 | 121.2 (2) | C18—C17'—C16' | 109.3 (14) |
C6—C7—C8 | 120.5 (2) | C19—C18—C21 | 112.48 (19) |
C9—C8—C7 | 130.0 (2) | C19—C18—C17' | 116.8 (9) |
C9—C8—S1 | 109.43 (16) | C21—C18—C17' | 130.5 (9) |
C7—C8—S1 | 120.57 (17) | C19—C18—C17 | 128.0 (4) |
C8—C9—C10 | 114.5 (2) | C21—C18—C17 | 119.5 (3) |
C8—C9—H9 | 122.7 | C18—C19—C20 | 129.6 (2) |
C10—C9—H9 | 122.7 | C18—C19—S2 | 110.38 (15) |
C11—C10—C9 | 112.46 (19) | C20—C19—S2 | 119.95 (17) |
C11—C10—C13 | 123.4 (15) | C19—C20—H20A | 109.5 |
C9—C10—C13 | 124.1 (15) | C19—C20—H20B | 109.5 |
C11—C10—C13' | 125 (5) | H20A—C20—H20B | 109.5 |
C9—C10—C13' | 122 (5) | C19—C20—H20C | 109.5 |
C10—C11—C12 | 130.8 (2) | H20A—C20—H20C | 109.5 |
C10—C11—S1 | 110.30 (16) | H20B—C20—H20C | 109.5 |
C12—C11—S1 | 118.87 (17) | C22—C21—C18 | 114.2 (2) |
C11—C12—H12A | 109.5 | C22—C21—H21 | 122.9 |
C11—C12—H12B | 109.5 | C18—C21—H21 | 122.9 |
H12A—C12—H12B | 109.5 | C21—C22—C23 | 127.7 (2) |
C11—C12—H12C | 109.5 | C21—C22—S2 | 109.85 (16) |
H12A—C12—H12C | 109.5 | C23—C22—S2 | 122.38 (17) |
H12B—C12—H12C | 109.5 | C24—C23—C29 | 118.3 (2) |
C17—C13—C10 | 132.4 (11) | C24—C23—C22 | 119.4 (2) |
C17—C13—C14 | 109.9 (5) | C29—C23—C22 | 122.3 (2) |
C10—C13—C14 | 117.3 (7) | C25—C24—C23 | 120.3 (2) |
F2—C14—F1 | 95.8 (6) | C25—C24—H24 | 119.8 |
F2—C14—C13 | 112.9 (15) | C23—C24—H24 | 119.8 |
F1—C14—C13 | 116.2 (18) | C26—C25—C24 | 120.3 (2) |
F2—C14—C15 | 116.9 (7) | C26—C25—H25 | 119.9 |
F1—C14—C15 | 109.3 (6) | C24—C25—H25 | 119.9 |
C13—C14—C15 | 105.9 (5) | C25—C26—C27 | 121.5 (2) |
F3—C15—F4 | 107.6 (5) | C25—C26—H26 | 119.3 |
F3—C15—C16 | 111.4 (5) | C27—C26—H26 | 119.3 |
F4—C15—C16 | 109.0 (5) | C26—C27—C29 | 118.1 (2) |
F3—C15—C14 | 114.9 (6) | C26—C27—C28 | 121.3 (2) |
F4—C15—C14 | 110.4 (5) | C29—C27—C28 | 120.6 (2) |
C16—C15—C14 | 103.4 (5) | C27—C28—H28A | 109.5 |
F6—C16—F5 | 106.0 (4) | C27—C28—H28B | 109.5 |
F6—C16—C17 | 112.8 (7) | H28A—C28—H28B | 109.5 |
F5—C16—C17 | 106.7 (6) | C27—C28—H28C | 109.5 |
F6—C16—C15 | 113.5 (5) | H28A—C28—H28C | 109.5 |
F5—C16—C15 | 112.0 (5) | H28B—C28—H28C | 109.5 |
C17—C16—C15 | 105.7 (4) | C27—C29—C23 | 121.5 (2) |
C13—C17—C18 | 127.2 (7) | C27—C29—H29 | 119.2 |
C13—C17—C16 | 110.4 (4) | C23—C29—H29 | 119.2 |
C7—C1—C2—C3 | 0.2 (5) | C17'—C13'—C14'—F2' | −115 (9) |
C1—C2—C3—C4 | −1.5 (5) | C10—C13'—C14'—F2' | 73 (12) |
C2—C3—C4—C6 | 1.0 (4) | C17'—C13'—C14'—F1' | 96 (9) |
C2—C3—C4—C5 | −177.1 (3) | C10—C13'—C14'—F1' | −75 (11) |
C3—C4—C6—C7 | 0.7 (4) | C17'—C13'—C14'—C15' | −22 (11) |
C5—C4—C6—C7 | 178.8 (3) | C10—C13'—C14'—C15' | 166 (10) |
C2—C1—C7—C6 | 1.4 (4) | F2'—C14'—C15'—F4' | −107.5 (16) |
C2—C1—C7—C8 | −178.8 (3) | F1'—C14'—C15'—F4' | 30 (2) |
C4—C6—C7—C1 | −1.9 (4) | C13'—C14'—C15'—F4' | 143 (6) |
C4—C6—C7—C8 | 178.3 (2) | F2'—C14'—C15'—F3' | 3.4 (19) |
C1—C7—C8—C9 | 177.8 (3) | F1'—C14'—C15'—F3' | 141.4 (17) |
C6—C7—C8—C9 | −2.4 (4) | C13'—C14'—C15'—F3' | −106 (6) |
C1—C7—C8—S1 | 0.0 (3) | F2'—C14'—C15'—C16' | 126.2 (16) |
C6—C7—C8—S1 | 179.81 (19) | F1'—C14'—C15'—C16' | −96 (2) |
C11—S1—C8—C9 | −0.36 (19) | C13'—C14'—C15'—C16' | 16 (6) |
C11—S1—C8—C7 | 177.88 (19) | F4'—C15'—C16'—F5' | 96.1 (14) |
C7—C8—C9—C10 | −177.7 (2) | F3'—C15'—C16'—F5' | −28.3 (19) |
S1—C8—C9—C10 | 0.3 (3) | C14'—C15'—C16'—F5' | −144.8 (13) |
C8—C9—C10—C11 | −0.1 (3) | F4'—C15'—C16'—F6' | −10.6 (19) |
C8—C9—C10—C13 | −179.6 (15) | F3'—C15'—C16'—F6' | −135.0 (13) |
C8—C9—C10—C13' | −176 (5) | C14'—C15'—C16'—F6' | 108.4 (13) |
C9—C10—C11—C12 | 179.8 (2) | F4'—C15'—C16'—C17' | −126.1 (18) |
C13—C10—C11—C12 | −0.7 (15) | F3'—C15'—C16'—C17' | 109.5 (19) |
C13'—C10—C11—C12 | −4 (4) | C14'—C15'—C16'—C17' | −7.1 (18) |
C9—C10—C11—S1 | −0.2 (2) | C10—C13'—C17'—C18 | −20 (18) |
C13—C10—C11—S1 | 179.3 (14) | C14'—C13'—C17'—C18 | 168 (4) |
C13'—C10—C11—S1 | 176 (4) | C10—C13'—C17'—C16' | −170 (9) |
C8—S1—C11—C10 | 0.32 (18) | C14'—C13'—C17'—C16' | 18 (11) |
C8—S1—C11—C12 | −179.65 (19) | F5'—C16'—C17'—C13' | 115 (7) |
C11—C10—C13—C17 | 40 (5) | F6'—C16'—C17'—C13' | −118 (7) |
C9—C10—C13—C17 | −141 (4) | C15'—C16'—C17'—C13' | −7 (7) |
C13'—C10—C13—C17 | 162 (100) | F5'—C16'—C17'—C18 | −43 (3) |
C11—C10—C13—C14 | −132 (2) | F6'—C16'—C17'—C18 | 84 (2) |
C9—C10—C13—C14 | 48 (4) | C15'—C16'—C17'—C18 | −165.2 (17) |
C13'—C10—C13—C14 | −9 (100) | C13'—C17'—C18—C19 | 66 (9) |
C17—C13—C14—F2 | −118 (2) | C16'—C17'—C18—C19 | −144.9 (14) |
C10—C13—C14—F2 | 56 (4) | C13'—C17'—C18—C21 | −120 (9) |
C17—C13—C14—F1 | 133 (2) | C16'—C17'—C18—C21 | 30 (3) |
C10—C13—C14—F1 | −53 (4) | C13'—C17'—C18—C17 | −95 (12) |
C17—C13—C14—C15 | 12 (3) | C16'—C17'—C18—C17 | 54 (5) |
C10—C13—C14—C15 | −175 (3) | C13—C17—C18—C19 | 35 (3) |
F2—C14—C15—F3 | −14.8 (9) | C16—C17—C18—C19 | −136.6 (6) |
F1—C14—C15—F3 | 92.6 (7) | C13—C17—C18—C21 | −144 (3) |
C13—C14—C15—F3 | −142 (2) | C16—C17—C18—C21 | 44.2 (10) |
F2—C14—C15—F4 | −136.7 (6) | C13—C17—C18—C17' | 57 (7) |
F1—C14—C15—F4 | −29.4 (8) | C16—C17—C18—C17' | −115 (7) |
C13—C14—C15—F4 | 96.5 (19) | C21—C18—C19—C20 | −177.1 (2) |
F2—C14—C15—C16 | 106.8 (7) | C17'—C18—C19—C20 | −1.3 (14) |
F1—C14—C15—C16 | −145.9 (6) | C17—C18—C19—C20 | 3.7 (7) |
C13—C14—C15—C16 | −20 (2) | C21—C18—C19—S2 | 0.4 (2) |
F3—C15—C16—F6 | −90.7 (7) | C17'—C18—C19—S2 | 176.2 (14) |
F4—C15—C16—F6 | 28.0 (7) | C17—C18—C19—S2 | −178.8 (6) |
C14—C15—C16—F6 | 145.4 (6) | C22—S2—C19—C18 | 0.26 (18) |
F3—C15—C16—F5 | 29.3 (8) | C22—S2—C19—C20 | 178.04 (19) |
F4—C15—C16—F5 | 147.9 (4) | C19—C18—C21—C22 | −1.1 (3) |
C14—C15—C16—F5 | −94.7 (5) | C17'—C18—C21—C22 | −176.1 (17) |
F3—C15—C16—C17 | 145.2 (7) | C17—C18—C21—C22 | 178.2 (5) |
F4—C15—C16—C17 | −96.2 (6) | C18—C21—C22—C23 | −176.8 (2) |
C14—C15—C16—C17 | 21.2 (7) | C18—C21—C22—S2 | 1.2 (2) |
C10—C13—C17—C18 | 18 (6) | C19—S2—C22—C21 | −0.85 (18) |
C14—C13—C17—C18 | −170.0 (15) | C19—S2—C22—C23 | 177.27 (19) |
C10—C13—C17—C16 | −170 (4) | C21—C22—C23—C24 | −25.3 (4) |
C14—C13—C17—C16 | 2 (3) | S2—C22—C23—C24 | 156.91 (19) |
F6—C16—C17—C13 | −140 (2) | C21—C22—C23—C29 | 152.5 (2) |
F5—C16—C17—C13 | 104 (2) | S2—C22—C23—C29 | −25.2 (3) |
C15—C16—C17—C13 | −15 (2) | C29—C23—C24—C25 | −0.7 (4) |
F6—C16—C17—C18 | 32.8 (10) | C22—C23—C24—C25 | 177.3 (2) |
F5—C16—C17—C18 | −83.1 (9) | C23—C24—C25—C26 | 0.1 (4) |
C15—C16—C17—C18 | 157.4 (7) | C24—C25—C26—C27 | 0.4 (4) |
C11—C10—C13'—C17' | 59 (14) | C25—C26—C27—C29 | −0.4 (4) |
C9—C10—C13'—C17' | −126 (9) | C25—C26—C27—C28 | −179.4 (3) |
C13—C10—C13'—C17' | −1 (100) | C26—C27—C29—C23 | −0.1 (4) |
C11—C10—C13'—C14' | −131 (9) | C28—C27—C29—C23 | 178.9 (2) |
C9—C10—C13'—C14' | 45 (13) | C24—C23—C29—C27 | 0.7 (4) |
C13—C10—C13'—C14' | 170 (100) | C22—C23—C29—C27 | −177.2 (2) |
Experimental details
Crystal data | |
Chemical formula | C29H22F6S2 |
Mr | 548.59 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 294 |
a, b, c (Å) | 11.9825 (16), 9.2708 (12), 22.935 (3) |
β (°) | 92.934 (2) |
V (Å3) | 2544.4 (6) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.27 |
Crystal size (mm) | 0.24 × 0.22 × 0.10 |
Data collection | |
Diffractometer | Bruker SMART CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.728, 0.970 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 13927, 5176, 3308 |
Rint | 0.033 |
(sin θ/λ)max (Å−1) | 0.625 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.041, 0.112, 1.02 |
No. of reflections | 5176 |
No. of parameters | 426 |
No. of restraints | 158 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.22, −0.18 |
Computer programs: SMART (Bruker, 1997), SAINT (Bruker, 1997), SAINT, SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), SHELXTL (Bruker, 1997), SHELXTL.
S1—C11 | 1.720 (2) | C16—C17 | 1.500 (6) |
S1—C8 | 1.729 (2) | C13'—C17' | 1.34 (2) |
S2—C19 | 1.724 (2) | C13'—C14' | 1.514 (10) |
S2—C22 | 1.727 (2) | C14'—C15' | 1.522 (10) |
C13—C17 | 1.354 (11) | C15'—C16' | 1.525 (10) |
C13—C14 | 1.504 (5) | C16'—C17' | 1.511 (10) |
C14—C15 | 1.526 (6) | C17'—C18 | 1.476 (10) |
C15—C16 | 1.518 (6) | ||
C6—C7—C8—S1 | 179.81 (19) | C10—C13'—C17'—C18 | −20 (18) |
C11—C10—C13—C17 | 40 (5) | C13'—C17'—C18—C19 | 66 (9) |
C10—C13—C17—C18 | 18 (6) | C13—C17—C18—C19 | 35 (3) |
C11—C10—C13'—C17' | 59 (14) | S2—C22—C23—C24 | 156.91 (19) |
A photochromic compound is defined as one that can be transformed reversibly between two isomers having different absorption spectra (Brown, 1971; Dürr & Bouas-Laurent, 1990). Although various types of photochromic compounds have been reported, compounds that undergo thermally stable photochromic reactions are limited to diarylethenes, fulgides and phenoxynaphthacenequinones (Kobatake & Irie, 2003). Of all the photochromic compounds, diarylethenes are the most promising candidates because of their good thermal stability, high sensitivity, fast response and high fatigue resistance (Irie, 2000; Tian & Yang, 2004). A large numbers of diarylethene crystal structures and their properties have already been reported (Matsuda & Irie, 2004; Morimoto et al., 2004; Morimoto & Irie, 2005; Kobatake & Irie, 2004), including some structures we have determined (Pu et al., 2003, 2004; Pu, Fan et al., 2005; Pu, Li et al., 2005; Pu, Liu et al., 2005; Pu, Xu et al., 2005; Pu, Xiao et al., 2005; Pu, Yang, Wang et al., 2005; Pu, Yang, Yan et al., 2005). For further background information see Pu, Liu et al. (2005). A new diarylethene compound, (Ia), with methyl groups at the meta-positions of both terminal phenyl groups was synthesized, and its crystal structure is reported here.
The molecular structure of (Ia) is shown in Fig. 1 and selected geometric parameters are given in Table 1. The molecule contains two thiophene rings substituted by two meta-methylbenzene rings in a photoactive antiparallel conformation, i.e. the molecule has molecular C2 symmetry. The central hexafluorocyclopentene ring is disordered over two sites (see Fig. 2 and Experimental section). In the cyclopent-1-ene ring, the C13═C17 bond is clearly a double bond, and the other bonds in the ring are clearly single bonds (see Table 1).
The two thiophene moieties are linked by the C13=C17 double bond. The two methyl groups located on different sides of the double bond and are thus trans with respect to the double bond. Such a conformation is crucial for the compound to exhibit photochromic and photoinduced properties (Woodward & Hoffmann, 1970). The dihedral angles between the least-squares plane of the atoms of the central cyclopent-1-ene ring and the adjacent thiophene rings are 40.8 (7)° for S1/C8–C11 and 45.1 (5)° for S2/C18–C22, and those between thiophene rings and the adjacent benzene rings are 3.3 (6)° for C1–C4/C6/C7 and 25.7 (9)° for C23–C27/C29, respectively. The distance between the two reactive C atoms (C13···C17) is 3.559 (8) Å. This distance indicates that the crystal can undergo photochromism in the crystalline phase because the photochromic reactivity of crystals depends on the distance between the reactive C atoms being less than 4.2 Å (Ramamurthy & Venkatesan, 1987; Shibata et al., 2002; Kobatake et al., 2004).
Upon irradiation with 313 nm light, colorless single crystals of (Ia) turned to blue rapidly, and the blue color remained stable in the dark. When the blue crystals were dissolved in hexane, the solution also remained blue. The absorption maximum of this solution was observed at a wavelength of 580 nm, consistent with the presence of the closed-ring isomer, (Ib). This result suggests that the title compound undergoes a photochromic reaction to produce the closed-ring molecule of (Ib) in single-crystal phase. We have not, so far, been able to determine the crystal structure of (Ib). Furthermore, upon irradiation with wavelengths longer than 450 nm, the blue crystal changes back to colourless, and the absorption spectrum of a hexane solution of the colorless crystals was the same as that of a solution of the open-ring form, (Ia), with the maximum absorption at 279 nm.