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At 293 K, a crystalline terpenoid indole alkaloid, the title compound, C21H25N2O3+·Cl, has been isolated from Gelsem­ium elegans Benth, a Chinese folk medicine plant. Structural ambiguities have been resolved by the X-ray crystallographic analysis. Intra­molecular C—H...O and inter­molecular C—H...Cl, C—H...O and N—H...Cl hydrogen bonds help to stabilize the structure.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536807006393/wn2113sup1.cif
Contains datablocks global, I

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S1600536807006393/wn2113Isup2.hkl
Contains datablock I

CCDC reference: 640516

Key indicators

  • Single-crystal X-ray study
  • T = 293 K
  • Mean [sigma](C-C) = 0.004 Å
  • R factor = 0.049
  • wR factor = 0.109
  • Data-to-parameter ratio = 16.7

checkCIF/PLATON results

No syntax errors found



Alert level B PLAT222_ALERT_3_B Large Non-Solvent H Ueq(max)/Ueq(min) ... 4.11 Ratio
Alert level C PLAT066_ALERT_1_C Predicted and Reported Transmissions Identical . ? PLAT220_ALERT_2_C Large Non-Solvent C Ueq(max)/Ueq(min) ... 3.28 Ratio PLAT480_ALERT_4_C Long H...A H-Bond Reported H11 .. CL1 .. 2.92 Ang. PLAT480_ALERT_4_C Long H...A H-Bond Reported H15 .. CL1 .. 2.86 Ang. PLAT480_ALERT_4_C Long H...A H-Bond Reported H20C .. O2 .. 2.86 Ang. PLAT480_ALERT_4_C Long H...A H-Bond Reported H4 .. O1 .. 2.86 Ang. PLAT480_ALERT_4_C Long H...A H-Bond Reported H16 .. CL1 .. 2.85 Ang. PLAT480_ALERT_4_C Long H...A H-Bond Reported H21B .. CL1 .. 2.86 Ang. PLAT480_ALERT_4_C Long H...A H-Bond Reported H20B .. O2 .. 2.66 Ang.
Alert level G REFLT03_ALERT_4_G Please check that the estimate of the number of Friedel pairs is correct. If it is not, please give the correct count in the _publ_section_exptl_refinement section of the submitted CIF. From the CIF: _diffrn_reflns_theta_max 27.15 From the CIF: _reflns_number_total 4177 Count of symmetry unique reflns 2495 Completeness (_total/calc) 167.41% TEST3: Check Friedels for noncentro structure Estimate of Friedel pairs measured 1682 Fraction of Friedel pairs measured 0.674 Are heavy atom types Z>Si present yes PLAT199_ALERT_1_G Check the Reported _cell_measurement_temperature 293 K PLAT200_ALERT_1_G Check the Reported _diffrn_ambient_temperature . 293 K PLAT791_ALERT_1_G Confirm the Absolute Configuration of N2 = . S PLAT791_ALERT_1_G Confirm the Absolute Configuration of C7 = . S PLAT791_ALERT_1_G Confirm the Absolute Configuration of C9 = . R PLAT791_ALERT_1_G Confirm the Absolute Configuration of C11 = . R PLAT791_ALERT_1_G Confirm the Absolute Configuration of C12 = . S PLAT791_ALERT_1_G Confirm the Absolute Configuration of C13 = . S PLAT791_ALERT_1_G Confirm the Absolute Configuration of C15 = . S PLAT791_ALERT_1_G Confirm the Absolute Configuration of C16 = . S
0 ALERT level A = In general: serious problem 1 ALERT level B = Potentially serious problem 9 ALERT level C = Check and explain 11 ALERT level G = General alerts; check 11 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 1 ALERT type 2 Indicator that the structure model may be wrong or deficient 1 ALERT type 3 Indicator that the structure quality may be low 8 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check

Computing details top

Data collection: SMART (Bruker, 2000); cell refinement: SAINT (Bruker, 2000); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: SHELXTL (Bruker, 2000); software used to prepare material for publication: SHELXTL.

Gelsevirine hydrochloride top
Crystal data top
C21H25N2O3+·ClF(000) = 824
Mr = 388.88Dx = 1.332 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 859 reflections
a = 7.398 (3) Åθ = 2.7–22.9°
b = 8.953 (4) ŵ = 0.22 mm1
c = 29.282 (13) ÅT = 293 K
V = 1939.6 (15) Å3Prism, colorless
Z = 40.15 × 0.12 × 0.10 mm
Data collection top
Bruker SMART APEX CCD area-detector
diffractometer
4177 independent reflections
Radiation source: fine-focus sealed tube3473 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.036
φ and ω scansθmax = 27.2°, θmin = 1.4°
Absorption correction: multi-scan
(SADABS; Sheldrick, 1996)
h = 96
Tmin = 0.968, Tmax = 0.978k = 1111
9516 measured reflectionsl = 3734
Refinement top
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.049H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.109 w = 1/[σ2(Fo2) + (0.053P)2]
where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
4177 reflectionsΔρmax = 0.29 e Å3
250 parametersΔρmin = 0.18 e Å3
1 restraintAbsolute structure: Flack, (1983), 1682 Friedel pairs
Primary atom site location: structure-invariant direct methodsAbsolute structure parameter: 0.04 (8)
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
O11.0862 (3)0.5323 (2)0.00019 (6)0.0547 (5)
O20.8021 (3)0.4045 (2)0.04886 (7)0.0591 (5)
O30.5814 (2)0.80741 (17)0.11407 (6)0.0398 (4)
N11.0311 (3)0.5740 (2)0.04401 (7)0.0417 (5)
N20.8032 (3)0.5402 (2)0.22843 (7)0.0370 (5)
H2X0.924 (2)0.536 (3)0.2291 (8)0.038 (7)*
C10.9659 (3)0.8895 (3)0.11657 (9)0.0388 (6)
H10.89090.91450.14090.047*
C21.0952 (3)0.9898 (3)0.10129 (9)0.0452 (6)
H21.10571.08240.11540.054*
C31.2093 (4)0.9543 (3)0.06530 (9)0.0479 (7)
H31.29481.02330.05550.057*
C41.1966 (4)0.8172 (3)0.04401 (9)0.0443 (6)
H41.27270.79190.01990.053*
C51.0678 (3)0.7199 (3)0.05964 (8)0.0341 (5)
C60.9490 (3)0.7517 (3)0.09540 (8)0.0321 (5)
C70.8179 (3)0.6223 (2)0.10176 (7)0.0316 (5)
C80.8767 (3)0.5150 (3)0.06244 (8)0.0390 (6)
C90.6184 (3)0.6701 (3)0.09147 (8)0.0352 (5)
H90.60730.68690.05850.042*
C100.4867 (3)0.5492 (3)0.10475 (9)0.0402 (6)
H10A0.50400.46230.08540.048*
H10B0.36380.58450.10070.048*
C110.5186 (3)0.5068 (3)0.15512 (8)0.0360 (5)
H110.41540.45270.16800.043*
C120.6952 (4)0.4180 (2)0.15995 (8)0.0347 (5)
C130.8339 (3)0.5461 (2)0.14920 (7)0.0292 (5)
H130.95800.51220.15470.035*
C140.5006 (3)0.7919 (3)0.15785 (9)0.0419 (6)
H14A0.37020.78960.15440.050*
H14B0.53100.87830.17630.050*
C150.5608 (3)0.6524 (3)0.18243 (8)0.0341 (5)
H150.50150.64750.21230.041*
C160.7672 (3)0.6441 (2)0.18902 (8)0.0302 (5)
H160.82720.74130.19140.036*
C170.7312 (4)0.3923 (3)0.21137 (9)0.0421 (6)
H17A0.62060.36550.22720.051*
H17B0.81940.31340.21580.051*
C180.7057 (4)0.2692 (3)0.13617 (9)0.0457 (6)
H180.81960.23510.12770.055*
C190.5681 (5)0.1846 (3)0.12657 (10)0.0605 (9)
H19A0.45200.21490.13450.073*
H19B0.58570.09390.11180.073*
C201.2108 (6)0.4113 (5)0.00184 (13)0.0959 (14)
H20A1.31930.44280.01700.144*
H20B1.23930.38000.02870.144*
H20C1.15780.32950.01830.144*
C210.7370 (4)0.5884 (3)0.27428 (8)0.0504 (7)
H21A0.60810.57700.27570.076*
H21B0.76810.69120.27920.076*
H21C0.79230.52790.29750.076*
Cl10.19674 (9)0.49492 (8)0.25005 (2)0.05108 (18)
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
O10.0553 (11)0.0756 (14)0.0331 (10)0.0160 (11)0.0032 (8)0.0144 (9)
O20.0756 (14)0.0492 (11)0.0523 (12)0.0117 (12)0.0097 (11)0.0217 (10)
O30.0429 (10)0.0302 (8)0.0464 (10)0.0063 (8)0.0016 (8)0.0048 (8)
N10.0430 (13)0.0506 (13)0.0314 (11)0.0082 (10)0.0047 (9)0.0070 (10)
N20.0411 (12)0.0353 (11)0.0346 (11)0.0043 (10)0.0007 (9)0.0052 (8)
C10.0393 (14)0.0363 (13)0.0408 (14)0.0002 (11)0.0048 (11)0.0008 (11)
C20.0455 (14)0.0369 (13)0.0530 (16)0.0044 (14)0.0015 (12)0.0016 (13)
C30.0384 (14)0.0521 (16)0.0531 (16)0.0127 (13)0.0009 (13)0.0163 (13)
C40.0311 (13)0.0656 (18)0.0361 (13)0.0024 (14)0.0037 (11)0.0084 (13)
C50.0321 (12)0.0417 (13)0.0284 (12)0.0061 (11)0.0033 (10)0.0038 (10)
C60.0302 (11)0.0349 (12)0.0313 (12)0.0009 (10)0.0012 (10)0.0064 (10)
C70.0395 (13)0.0267 (11)0.0285 (11)0.0020 (11)0.0000 (10)0.0033 (9)
C80.0464 (14)0.0357 (13)0.0349 (13)0.0066 (12)0.0036 (11)0.0049 (11)
C90.0389 (13)0.0345 (12)0.0320 (12)0.0016 (11)0.0054 (10)0.0005 (10)
C100.0347 (13)0.0382 (13)0.0478 (16)0.0000 (11)0.0086 (11)0.0010 (11)
C110.0296 (12)0.0336 (11)0.0447 (14)0.0059 (12)0.0005 (10)0.0007 (12)
C120.0402 (13)0.0259 (11)0.0379 (12)0.0034 (12)0.0031 (11)0.0009 (10)
C130.0254 (11)0.0278 (11)0.0343 (12)0.0019 (9)0.0019 (9)0.0001 (9)
C140.0402 (15)0.0368 (13)0.0487 (16)0.0092 (12)0.0052 (12)0.0001 (12)
C150.0344 (13)0.0344 (12)0.0335 (13)0.0007 (11)0.0046 (10)0.0006 (10)
C160.0343 (12)0.0247 (11)0.0317 (12)0.0020 (9)0.0023 (10)0.0021 (9)
C170.0505 (16)0.0296 (12)0.0462 (15)0.0046 (12)0.0026 (12)0.0077 (11)
C180.0610 (17)0.0268 (12)0.0492 (16)0.0005 (14)0.0026 (14)0.0014 (11)
C190.090 (3)0.0321 (13)0.0596 (19)0.0149 (18)0.0038 (18)0.0001 (13)
C200.091 (3)0.125 (3)0.071 (2)0.054 (3)0.008 (2)0.043 (2)
C210.069 (2)0.0529 (16)0.0292 (13)0.0075 (15)0.0065 (12)0.0008 (12)
Cl10.0432 (3)0.0490 (4)0.0611 (4)0.0014 (3)0.0007 (3)0.0089 (4)
Geometric parameters (Å, º) top
O1—N11.397 (3)C10—H10A0.9700
O1—C201.424 (4)C10—H10B0.9700
O2—C81.201 (3)C11—C121.536 (3)
O3—C141.421 (3)C11—C151.561 (3)
O3—C91.423 (3)C11—H110.9800
N1—C81.369 (3)C12—C181.506 (3)
N1—C51.410 (3)C12—C171.546 (4)
N2—C211.493 (3)C12—C131.570 (3)
N2—C161.506 (3)C13—C161.540 (3)
N2—C171.513 (3)C13—H130.9800
N2—H2X0.893 (17)C14—C151.509 (3)
C1—C61.387 (3)C14—H14A0.9700
C1—C21.386 (4)C14—H14B0.9700
C1—H10.9300C15—C161.540 (3)
C2—C31.387 (4)C15—H150.9800
C2—H20.9300C16—H160.9800
C3—C41.380 (4)C17—H17A0.9700
C3—H30.9300C17—H17B0.9700
C4—C51.370 (4)C18—C191.299 (4)
C4—H40.9300C18—H180.9300
C5—C61.396 (3)C19—H19A0.9300
C6—C71.522 (3)C19—H19B0.9300
C7—C131.552 (3)C20—H20A0.9599
C7—C81.561 (3)C20—H20B0.9599
C7—C91.566 (3)C20—H20C0.9599
C9—C101.507 (3)C21—H21A0.9599
C9—H90.9800C21—H21B0.9599
C10—C111.541 (3)C21—H21C0.9599
N1—O1—C20111.2 (2)C15—C11—H11111.8
C14—O3—C9114.59 (18)C18—C12—C11117.4 (2)
C8—N1—O1120.2 (2)C18—C12—C17108.02 (19)
C8—N1—C5113.0 (2)C11—C12—C17108.3 (2)
O1—N1—C5119.3 (2)C18—C12—C13121.3 (2)
C21—N2—C16116.9 (2)C11—C12—C1399.19 (17)
C21—N2—C17115.8 (2)C17—C12—C13101.04 (19)
C16—N2—C17103.02 (17)C16—C13—C7113.73 (18)
C21—N2—H2X108.7 (16)C16—C13—C1293.14 (17)
C16—N2—H2X102.7 (16)C7—C13—C12116.79 (18)
C17—N2—H2X108.7 (16)C16—C13—H13110.7
C6—C1—C2119.6 (2)C7—C13—H13110.7
C6—C1—H1120.2C12—C13—H13110.7
C2—C1—H1120.2O3—C14—C15112.7 (2)
C3—C2—C1121.1 (3)O3—C14—H14A109.0
C3—C2—H2119.4C15—C14—H14A109.0
C1—C2—H2119.4O3—C14—H14B109.0
C4—C3—C2120.4 (3)C15—C14—H14B109.0
C4—C3—H3119.8H14A—C14—H14B107.8
C2—C3—H3119.8C14—C15—C16113.1 (2)
C5—C4—C3117.5 (3)C14—C15—C11112.8 (2)
C5—C4—H4121.2C16—C15—C11102.83 (18)
C3—C4—H4121.2C14—C15—H15109.3
C4—C5—C6123.9 (2)C16—C15—H15109.3
C4—C5—N1127.9 (2)C11—C15—H15109.3
C6—C5—N1108.1 (2)N2—C16—C15107.54 (19)
C1—C6—C5117.4 (2)N2—C16—C1399.88 (18)
C1—C6—C7132.8 (2)C15—C16—C13104.50 (19)
C5—C6—C7109.7 (2)N2—C16—H16114.5
C6—C7—C13113.31 (18)C15—C16—H16114.5
C6—C7—C8101.56 (19)C13—C16—H16114.5
C13—C7—C8111.59 (18)N2—C17—C12104.57 (18)
C6—C7—C9111.66 (18)N2—C17—H17A110.8
C13—C7—C9111.36 (19)C12—C17—H17A110.8
C8—C7—C9106.78 (19)N2—C17—H17B110.8
O2—C8—N1124.8 (2)C12—C17—H17B110.8
O2—C8—C7128.6 (2)H17A—C17—H17B108.9
N1—C8—C7106.6 (2)C19—C18—C12125.1 (3)
O3—C9—C10112.1 (2)C19—C18—H18117.4
O3—C9—C7109.13 (19)C12—C18—H18117.4
C10—C9—C7111.30 (19)C18—C19—H19A120.0
O3—C9—H9108.1C18—C19—H19B120.0
C10—C9—H9108.1H19A—C19—H19B120.0
C7—C9—H9108.1O1—C20—H20A109.5
C9—C10—C11109.0 (2)O1—C20—H20B109.5
C9—C10—H10A109.9H20A—C20—H20B109.5
C11—C10—H10A109.9O1—C20—H20C109.5
C9—C10—H10B109.9H20A—C20—H20C109.5
C11—C10—H10B109.9H20B—C20—H20C109.5
H10A—C10—H10B108.3N2—C21—H21A109.5
C12—C11—C10110.23 (19)N2—C21—H21B109.5
C12—C11—C15102.40 (18)H21A—C21—H21B109.5
C10—C11—C15108.4 (2)N2—C21—H21C109.5
C12—C11—H11111.8H21A—C21—H21C109.5
C10—C11—H11111.8H21B—C21—H21C109.5
C20—O1—N1—C893.7 (3)C10—C11—C12—C1863.2 (3)
C20—O1—N1—C5118.8 (3)C15—C11—C12—C18178.4 (2)
C6—C1—C2—C30.4 (4)C10—C11—C12—C17174.27 (19)
C1—C2—C3—C40.3 (4)C15—C11—C12—C1759.1 (2)
C2—C3—C4—C50.3 (4)C10—C11—C12—C1369.3 (2)
C3—C4—C5—C60.4 (4)C15—C11—C12—C1345.8 (2)
C3—C4—C5—N1179.0 (2)C6—C7—C13—C1669.4 (3)
C8—N1—C5—C4171.1 (2)C8—C7—C13—C16176.7 (2)
O1—N1—C5—C421.4 (4)C9—C7—C13—C1657.5 (2)
C8—N1—C5—C69.5 (3)C6—C7—C13—C12176.20 (19)
O1—N1—C5—C6159.2 (2)C8—C7—C13—C1269.9 (3)
C2—C1—C6—C51.1 (4)C9—C7—C13—C1249.3 (2)
C2—C1—C6—C7176.2 (2)C18—C12—C13—C16170.9 (2)
C4—C5—C6—C11.1 (4)C11—C12—C13—C1659.08 (19)
N1—C5—C6—C1178.4 (2)C17—C12—C13—C1651.7 (2)
C4—C5—C6—C7176.8 (2)C18—C12—C13—C770.5 (3)
N1—C5—C6—C73.8 (3)C11—C12—C13—C759.5 (2)
C1—C6—C7—C1365.0 (3)C17—C12—C13—C7170.33 (19)
C5—C6—C7—C13117.5 (2)C9—O3—C14—C1532.0 (3)
C1—C6—C7—C8175.2 (3)O3—C14—C15—C1657.9 (3)
C5—C6—C7—C82.3 (2)O3—C14—C15—C1158.3 (3)
C1—C6—C7—C961.7 (3)C12—C11—C15—C14135.3 (2)
C5—C6—C7—C9115.7 (2)C10—C11—C15—C1418.9 (3)
O1—N1—C8—O217.6 (4)C12—C11—C15—C1613.1 (2)
C5—N1—C8—O2166.9 (2)C10—C11—C15—C16103.3 (2)
O1—N1—C8—C7160.2 (2)C21—N2—C16—C1564.7 (3)
C5—N1—C8—C710.8 (3)C17—N2—C16—C1563.4 (2)
C6—C7—C8—O2170.0 (3)C21—N2—C16—C13173.5 (2)
C13—C7—C8—O269.0 (3)C17—N2—C16—C1345.3 (2)
C9—C7—C8—O252.9 (3)C14—C15—C16—N2157.6 (2)
C6—C7—C8—N17.6 (2)C11—C15—C16—N280.4 (2)
C13—C7—C8—N1113.4 (2)C14—C15—C16—C1396.9 (2)
C9—C7—C8—N1124.7 (2)C11—C15—C16—C1325.1 (2)
C14—O3—C9—C1029.8 (3)C7—C13—C16—N2179.29 (18)
C14—O3—C9—C794.0 (2)C12—C13—C16—N259.58 (19)
C6—C7—C9—O347.0 (2)C7—C13—C16—C1569.6 (2)
C13—C7—C9—O380.8 (2)C12—C13—C16—C1551.6 (2)
C8—C7—C9—O3157.18 (19)C21—N2—C17—C12139.9 (2)
C6—C7—C9—C10171.23 (19)C16—N2—C17—C1211.0 (3)
C13—C7—C9—C1043.5 (2)C18—C12—C17—N2154.7 (2)
C8—C7—C9—C1078.6 (2)C11—C12—C17—N277.3 (2)
O3—C9—C10—C1168.2 (3)C13—C12—C17—N226.3 (2)
C7—C9—C10—C1154.3 (3)C11—C12—C18—C1926.7 (4)
C9—C10—C11—C1272.5 (2)C17—C12—C18—C1995.9 (3)
C9—C10—C11—C1538.8 (2)C13—C12—C18—C19148.4 (3)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
C10—H10A···O20.972.513.131 (4)122
C11—H11···Cl10.982.923.662 (3)133
C15—H15···Cl10.982.863.628 (3)136
C20—H20C···O20.962.863.323 (5)111
N2—H2X···Cl1i0.89 (2)2.14 (2)3.007 (3)163 (2)
C4—H4···O1ii0.932.863.434 (3)121
C16—H16···Cl1iii0.982.853.623 (3)136
C21—H21B···Cl1iii0.962.863.741 (3)153
C19—H19B···O3iv0.932.573.399 (3)149
C20—H20B···O2v0.962.663.264 (4)122
Symmetry codes: (i) x+1, y, z; (ii) x+1/2, y+3/2, z; (iii) x+1, y+1/2, z+1/2; (iv) x, y1, z; (v) x+1/2, y+1/2, z.
 

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