Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536807021241/lh2365sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536807021241/lh2365Isup2.hkl |
CCDC reference: 651388
Key indicators
- Single-crystal X-ray study
- T = 294 K
- Mean (C-C) = 0.003 Å
- R factor = 0.040
- wR factor = 0.113
- Data-to-parameter ratio = 15.5
checkCIF/PLATON results
No syntax errors found
Alert level C PLAT066_ALERT_1_C Predicted and Reported Transmissions Identical . ? PLAT222_ALERT_3_C Large Non-Solvent H Ueq(max)/Ueq(min) ... 3.07 Ratio PLAT322_ALERT_2_C Check Hybridisation of S1 in Main Residue . ?
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 3 ALERT level C = Check and explain 0 ALERT level G = General alerts; check 1 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 1 ALERT type 2 Indicator that the structure model may be wrong or deficient 1 ALERT type 3 Indicator that the structure quality may be low 0 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
Isobenzofuran-1,3-dione (0.02 mol) in methanol (15 ml) was refluxed for 0.5 h, and then cooled. Thiazol-2-amine (0.02 mol) was added to the above solution and was refluxed for 4 h. After cooling, filtration and drying, the title compound was obtained. 10 mg of (I) was dissolved in 10 ml acetone, and the solution was kept at room temperature for 10 d. Natural evaporation gave light yellow single crystals of the title compound, suitable for X-ray analysis.
The H atoms bonded to C atoms were positioned geometrically (C—H = 0.93–0.96 Å) and refined as riding with Uiso(H) = 1.2Ueq(C) or 1.5 Ueq(methyl C). The H atom bonded to N2 was refined isotropically.
Thiazole and its derivatives are widely used in the fields of biology and for the synthesis of antibiotic and antipyrotic materials. In this paper, the structure of the title compound, (I), is reported. The molecular structure of (I) is illustrated in Fig. 1. The bond lengths and angles of the title compound agree with those common to N-(2-Bromothiazol-5-ylmethyl)phthalimide (Li et al., 2006). The dihedral angle between the thiazole ring and benzene ring is 87.5 (2) °. In the crystal structure, centrosymmetric dimers are formed via intermolecular N—H···N hydrogen bonds (Fig. 2 and Table 1) and a weak intramolecular C—H···O hydrogen bond may influence the conformation of the molecule.
The bond lengths and angles of the title compound agree with those common to N-(2-romothiazol-5-ylmethyl)phthalimide (Li et al., 2006).
Data collection: SMART (Bruker, 1997); cell refinement: SAINT (Bruker, 1997); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: SHELXTL (Bruker, 1997); software used to prepare material for publication: SHELXTL.
Fig. 1. The molecular structure of (I), drawn with 30% probability ellipsoids. | |
Fig. 2. The crystal packing of (I), viewed along b axis. Hydrogen bonds are indicated by dashed lines. |
C12H10N2O3S | F(000) = 1088 |
Mr = 262.28 | Dx = 1.387 Mg m−3 |
Orthorhombic, Pbca | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ac 2ab | Cell parameters from 3562 reflections |
a = 14.921 (7) Å | θ = 2.6–25.8° |
b = 8.885 (5) Å | µ = 0.26 mm−1 |
c = 18.954 (10) Å | T = 294 K |
V = 2513 (2) Å3 | Block, light yellow |
Z = 8 | 0.24 × 0.22 × 0.20 mm |
Bruker SMART CCD diffractometer | 2608 independent reflections |
Radiation source: fine-focus sealed tube | 1727 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.055 |
φ and ω scans | θmax = 26.5°, θmin = 2.6° |
Absorption correction: multi-scan (SADABS; Bruker, 1997) | h = −9→18 |
Tmin = 0.941, Tmax = 0.950 | k = −11→10 |
13481 measured reflections | l = −23→23 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.040 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.113 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0535P)2 + 0.5869P] where P = (Fo2 + 2Fc2)/3 |
2608 reflections | (Δ/σ)max < 0.001 |
168 parameters | Δρmax = 0.21 e Å−3 |
0 restraints | Δρmin = −0.30 e Å−3 |
C12H10N2O3S | V = 2513 (2) Å3 |
Mr = 262.28 | Z = 8 |
Orthorhombic, Pbca | Mo Kα radiation |
a = 14.921 (7) Å | µ = 0.26 mm−1 |
b = 8.885 (5) Å | T = 294 K |
c = 18.954 (10) Å | 0.24 × 0.22 × 0.20 mm |
Bruker SMART CCD diffractometer | 2608 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 1997) | 1727 reflections with I > 2σ(I) |
Tmin = 0.941, Tmax = 0.950 | Rint = 0.055 |
13481 measured reflections |
R[F2 > 2σ(F2)] = 0.040 | 0 restraints |
wR(F2) = 0.113 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | Δρmax = 0.21 e Å−3 |
2608 reflections | Δρmin = −0.30 e Å−3 |
168 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.73851 (3) | 0.02588 (8) | 0.42504 (3) | 0.0567 (2) | |
N2 | 0.55727 (10) | 0.07951 (18) | 0.41824 (8) | 0.0384 (4) | |
O1 | 0.63380 (10) | 0.1711 (2) | 0.32477 (8) | 0.0662 (5) | |
O2 | 0.54989 (12) | 0.43035 (19) | 0.41001 (10) | 0.0751 (5) | |
O3 | 0.44802 (11) | 0.59151 (18) | 0.37036 (9) | 0.0646 (5) | |
N1 | 0.61790 (10) | −0.0419 (2) | 0.51622 (9) | 0.0471 (4) | |
C1 | 0.77031 (14) | −0.0651 (3) | 0.50073 (12) | 0.0654 (7) | |
H1 | 0.8289 | −0.0922 | 0.5116 | 0.078* | |
C2 | 0.69962 (14) | −0.0916 (3) | 0.54175 (12) | 0.0585 (6) | |
H2 | 0.7048 | −0.1405 | 0.5849 | 0.070* | |
C3 | 0.62959 (12) | 0.0223 (2) | 0.45511 (9) | 0.0364 (4) | |
C4 | 0.56328 (12) | 0.1532 (2) | 0.35544 (10) | 0.0399 (5) | |
C5 | 0.47413 (12) | 0.1974 (2) | 0.32457 (9) | 0.0380 (4) | |
C6 | 0.42858 (14) | 0.0902 (2) | 0.28470 (10) | 0.0485 (5) | |
H6 | 0.4521 | −0.0063 | 0.2801 | 0.058* | |
C7 | 0.34829 (16) | 0.1262 (3) | 0.25173 (11) | 0.0598 (6) | |
H7 | 0.3182 | 0.0538 | 0.2254 | 0.072* | |
C8 | 0.31331 (16) | 0.2682 (3) | 0.25796 (13) | 0.0659 (7) | |
H8 | 0.2598 | 0.2922 | 0.2355 | 0.079* | |
C9 | 0.35732 (15) | 0.3755 (3) | 0.29740 (12) | 0.0569 (6) | |
H9 | 0.3332 | 0.4716 | 0.3014 | 0.068* | |
C10 | 0.43748 (12) | 0.3416 (2) | 0.33131 (9) | 0.0397 (5) | |
C11 | 0.48523 (14) | 0.4555 (2) | 0.37476 (11) | 0.0453 (5) | |
C12 | 0.4931 (2) | 0.7107 (3) | 0.40852 (16) | 0.0859 (9) | |
H12A | 0.5015 | 0.6807 | 0.4567 | 0.129* | |
H12B | 0.4573 | 0.8004 | 0.4069 | 0.129* | |
H12C | 0.5503 | 0.7299 | 0.3872 | 0.129* | |
H2A | 0.5057 (14) | 0.075 (2) | 0.4383 (10) | 0.042 (6)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0282 (3) | 0.0935 (5) | 0.0485 (3) | 0.0046 (3) | 0.0109 (2) | 0.0111 (3) |
N2 | 0.0248 (8) | 0.0530 (10) | 0.0373 (9) | −0.0002 (7) | 0.0078 (7) | 0.0077 (7) |
O1 | 0.0361 (8) | 0.1083 (13) | 0.0543 (9) | −0.0039 (8) | 0.0139 (7) | 0.0255 (9) |
O2 | 0.0716 (12) | 0.0633 (11) | 0.0904 (13) | −0.0096 (9) | −0.0457 (10) | −0.0053 (9) |
O3 | 0.0687 (11) | 0.0502 (10) | 0.0749 (11) | −0.0021 (8) | −0.0053 (8) | −0.0082 (8) |
N1 | 0.0304 (8) | 0.0699 (12) | 0.0412 (9) | 0.0042 (8) | 0.0065 (7) | 0.0133 (8) |
C1 | 0.0334 (12) | 0.106 (2) | 0.0564 (14) | 0.0159 (12) | 0.0024 (10) | 0.0109 (13) |
C2 | 0.0372 (12) | 0.0905 (18) | 0.0479 (12) | 0.0139 (12) | 0.0010 (10) | 0.0168 (12) |
C3 | 0.0275 (9) | 0.0450 (11) | 0.0366 (10) | 0.0005 (8) | 0.0050 (7) | −0.0006 (9) |
C4 | 0.0342 (10) | 0.0509 (12) | 0.0347 (10) | −0.0026 (9) | 0.0054 (8) | 0.0018 (9) |
C5 | 0.0349 (10) | 0.0505 (12) | 0.0286 (9) | −0.0086 (9) | 0.0035 (7) | 0.0050 (9) |
C6 | 0.0549 (13) | 0.0525 (13) | 0.0380 (11) | −0.0120 (10) | 0.0037 (9) | −0.0016 (9) |
C7 | 0.0609 (14) | 0.0755 (17) | 0.0430 (12) | −0.0280 (13) | −0.0145 (10) | −0.0002 (12) |
C8 | 0.0515 (14) | 0.0804 (18) | 0.0659 (15) | −0.0114 (13) | −0.0307 (12) | 0.0148 (13) |
C9 | 0.0478 (13) | 0.0577 (14) | 0.0651 (14) | −0.0021 (11) | −0.0173 (10) | 0.0106 (12) |
C10 | 0.0354 (10) | 0.0463 (12) | 0.0374 (10) | −0.0095 (9) | −0.0060 (8) | 0.0060 (8) |
C11 | 0.0450 (12) | 0.0468 (13) | 0.0441 (11) | −0.0098 (10) | −0.0016 (9) | 0.0045 (9) |
C12 | 0.104 (2) | 0.0569 (17) | 0.097 (2) | −0.0212 (15) | 0.0113 (18) | −0.0230 (15) |
S1—C1 | 1.714 (2) | C5—C6 | 1.393 (3) |
S1—C3 | 1.7224 (19) | C5—C10 | 1.399 (3) |
N2—C4 | 1.362 (2) | C6—C7 | 1.389 (3) |
N2—C3 | 1.382 (2) | C6—H6 | 0.9300 |
N2—H2A | 0.86 (2) | C7—C8 | 1.370 (3) |
O1—C4 | 1.213 (2) | C7—H7 | 0.9300 |
O2—C11 | 1.194 (2) | C8—C9 | 1.378 (3) |
O3—C11 | 1.333 (3) | C8—H8 | 0.9300 |
O3—C12 | 1.448 (3) | C9—C10 | 1.391 (3) |
N1—C3 | 1.303 (2) | C9—H9 | 0.9300 |
N1—C2 | 1.384 (3) | C10—C11 | 1.487 (3) |
C1—C2 | 1.331 (3) | C12—H12A | 0.9600 |
C1—H1 | 0.9300 | C12—H12B | 0.9600 |
C2—H2 | 0.9300 | C12—H12C | 0.9600 |
C4—C5 | 1.505 (3) | ||
C1—S1—C3 | 88.60 (10) | C5—C6—H6 | 119.8 |
C4—N2—C3 | 124.56 (16) | C8—C7—C6 | 120.1 (2) |
C4—N2—H2A | 117.9 (13) | C8—C7—H7 | 119.9 |
C3—N2—H2A | 117.3 (13) | C6—C7—H7 | 119.9 |
C11—O3—C12 | 116.0 (2) | C7—C8—C9 | 120.1 (2) |
C3—N1—C2 | 109.42 (16) | C7—C8—H8 | 119.9 |
C2—C1—S1 | 110.66 (17) | C9—C8—H8 | 119.9 |
C2—C1—H1 | 124.7 | C8—C9—C10 | 120.7 (2) |
S1—C1—H1 | 124.7 | C8—C9—H9 | 119.6 |
C1—C2—N1 | 115.9 (2) | C10—C9—H9 | 119.6 |
C1—C2—H2 | 122.0 | C9—C10—C5 | 119.50 (18) |
N1—C2—H2 | 122.0 | C9—C10—C11 | 121.4 (2) |
N1—C3—N2 | 120.38 (16) | C5—C10—C11 | 119.11 (17) |
N1—C3—S1 | 115.37 (14) | O2—C11—O3 | 122.7 (2) |
N2—C3—S1 | 124.23 (14) | O2—C11—C10 | 124.7 (2) |
O1—C4—N2 | 122.64 (18) | O3—C11—C10 | 112.52 (18) |
O1—C4—C5 | 123.11 (17) | O3—C12—H12A | 109.5 |
N2—C4—C5 | 114.02 (15) | O3—C12—H12B | 109.5 |
C6—C5—C10 | 119.03 (18) | H12A—C12—H12B | 109.5 |
C6—C5—C4 | 117.61 (18) | O3—C12—H12C | 109.5 |
C10—C5—C4 | 123.30 (17) | H12A—C12—H12C | 109.5 |
C7—C6—C5 | 120.5 (2) | H12B—C12—H12C | 109.5 |
C7—C6—H6 | 119.8 | ||
C3—S1—C1—C2 | 0.3 (2) | C4—C5—C6—C7 | −176.65 (17) |
S1—C1—C2—N1 | −0.2 (3) | C5—C6—C7—C8 | 0.3 (3) |
C3—N1—C2—C1 | 0.0 (3) | C6—C7—C8—C9 | −0.5 (4) |
C2—N1—C3—N2 | 179.05 (18) | C7—C8—C9—C10 | 0.0 (4) |
C2—N1—C3—S1 | 0.2 (2) | C8—C9—C10—C5 | 0.7 (3) |
C4—N2—C3—N1 | 177.45 (19) | C8—C9—C10—C11 | −179.2 (2) |
C4—N2—C3—S1 | −3.8 (3) | C6—C5—C10—C9 | −0.9 (3) |
C1—S1—C3—N1 | −0.29 (18) | C4—C5—C10—C9 | 176.01 (18) |
C1—S1—C3—N2 | −179.07 (18) | C6—C5—C10—C11 | 179.03 (17) |
C3—N2—C4—O1 | 2.5 (3) | C4—C5—C10—C11 | −4.1 (3) |
C3—N2—C4—C5 | 177.13 (17) | C12—O3—C11—O2 | 2.8 (3) |
O1—C4—C5—C6 | 90.0 (2) | C12—O3—C11—C10 | −177.14 (19) |
N2—C4—C5—C6 | −84.6 (2) | C9—C10—C11—O2 | 173.3 (2) |
O1—C4—C5—C10 | −87.0 (3) | C5—C10—C11—O2 | −6.7 (3) |
N2—C4—C5—C10 | 98.4 (2) | C9—C10—C11—O3 | −6.8 (3) |
C10—C5—C6—C7 | 0.4 (3) | C5—C10—C11—O3 | 173.25 (17) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2A···N1i | 0.86 (2) | 2.06 (2) | 2.913 (3) | 175 |
C9—H9···O3 | 0.93 | 2.40 | 2.725 (3) | 100 |
Symmetry code: (i) −x+1, −y, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C12H10N2O3S |
Mr | 262.28 |
Crystal system, space group | Orthorhombic, Pbca |
Temperature (K) | 294 |
a, b, c (Å) | 14.921 (7), 8.885 (5), 18.954 (10) |
V (Å3) | 2513 (2) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.26 |
Crystal size (mm) | 0.24 × 0.22 × 0.20 |
Data collection | |
Diffractometer | Bruker SMART CCD |
Absorption correction | Multi-scan (SADABS; Bruker, 1997) |
Tmin, Tmax | 0.941, 0.950 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 13481, 2608, 1727 |
Rint | 0.055 |
(sin θ/λ)max (Å−1) | 0.628 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.040, 0.113, 1.03 |
No. of reflections | 2608 |
No. of parameters | 168 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.21, −0.30 |
Computer programs: SMART (Bruker, 1997), SAINT (Bruker, 1997), SAINT, SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), SHELXTL (Bruker, 1997), SHELXTL.
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2A···N1i | 0.86 (2) | 2.06 (2) | 2.913 (3) | 175 |
C9—H9···O3 | 0.93 | 2.40 | 2.725 (3) | 100 |
Symmetry code: (i) −x+1, −y, −z+1. |
Thiazole and its derivatives are widely used in the fields of biology and for the synthesis of antibiotic and antipyrotic materials. In this paper, the structure of the title compound, (I), is reported. The molecular structure of (I) is illustrated in Fig. 1. The bond lengths and angles of the title compound agree with those common to N-(2-Bromothiazol-5-ylmethyl)phthalimide (Li et al., 2006). The dihedral angle between the thiazole ring and benzene ring is 87.5 (2) °. In the crystal structure, centrosymmetric dimers are formed via intermolecular N—H···N hydrogen bonds (Fig. 2 and Table 1) and a weak intramolecular C—H···O hydrogen bond may influence the conformation of the molecule.