Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536807022672/rz2136sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536807022672/rz2136Isup2.hkl |
CCDC reference: 651505
Key indicators
- Single-crystal X-ray study
- T = 297 K
- Mean (C-C) = 0.003 Å
- Disorder in main residue
- R factor = 0.051
- wR factor = 0.143
- Data-to-parameter ratio = 16.9
checkCIF/PLATON results
No syntax errors found
Alert level B PLAT241_ALERT_2_B Check High Ueq as Compared to Neighbors for C4
Alert level C PLAT220_ALERT_2_C Large Non-Solvent C Ueq(max)/Ueq(min) ... 2.58 Ratio PLAT242_ALERT_2_C Check Low Ueq as Compared to Neighbors for C3' PLAT301_ALERT_3_C Main Residue Disorder ......................... 4.00 Perc. PLAT720_ALERT_4_C Number of Unusual/Non-Standard Label(s) ........ 2
Alert level G PLAT860_ALERT_3_G Note: Number of Least-Squares Restraints ....... 4
0 ALERT level A = In general: serious problem 1 ALERT level B = Potentially serious problem 4 ALERT level C = Check and explain 1 ALERT level G = General alerts; check 0 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 3 ALERT type 2 Indicator that the structure model may be wrong or deficient 2 ALERT type 3 Indicator that the structure quality may be low 1 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
To a solution of iminophosphorane (a) (1.45 g, 3 mmol) in anhydrous dichloromethane (15 ml), isopropyl isocyanate (3 mmol) was added under dry N2 at room temperature. After the reaction mixture was left unstirred for 48 h at room temperature, the solvent was removed under reduced pressure and ether/petroleum ether (1:2 v/v, 20 ml) was added to precipitate triphenylphosphine oxide. After filtration the solvent was removed to give carbodiimide (b), which was used directly without further purification. To the solution of carbodiimide (15 ml), morpholine (3 mmol) was added. After the mixture was stirred for 6 h, the solvent was removed and anhydrous ethanol (10 ml) containing several drops of EtONa in EtOH was added. The mixture was stirred for 12hr at room temperature. The solution was condensed and the residue was recrystallized from ethanol to give the title compound (I), in a yield of 81% (m.p. 455 K). Anal. Calcd. for C17H23N3O2S: C, 61.23; H, 6.95; N, 12.60. Found: C, 61.07; H,7.04; N, 12.46 Crystals suitable for single-crystal X-ray analysis were obtained on slow evaporation of a hexane/dichloromethane solution (1:3 v/v) at room temperature.
All H atoms were located in difference Fourier maps and refined as riding, with C—H = 0.96 (CH3) or 0.97 Å (CH2), and with Uiso(H) values of 1.2Ueq(C), or 1.5Ueq(C) for the methyl groups. The C3 carbon atom of the cyclohexane ring is disordered over two positions, with refined site occupancies of 0.743 (10) and 0.257 (10) for the major and minor components respectively. The major component was refined anisotropically whereas the minor component was refined isotropically. The C—C bond lengths involving the disordered C3 atom were restrained to 1.48 (1) Å.
Pyrimidine derivatives are attracting the increasing attention of the synthetic community because of the important role played by such systems in many natural products, antibiotics and drugs (Ding et al., 2004). In recent years, we have been engaged in the preparation of derivatives of heterocycles via the aza-Wittig reaction. The title compound, (I), was synthesized and structurally characterized in this context.
In the fused heterobicyclic ring of the molecule, bond lengths and angles (Table 1) are similar to those observed in closely related structures (Zeng et al., 2006). All ring atoms in thienopyrimidine system are essentially coplanar. The cyclohexane ring adopts a half-chair conformation, while the pyrimidinone ring is in standard chair conformation.
The crystal packing is stabilized by intra- and intermolecular hydrogen bonding interactions (Table 2). Atoms C12 and C14, as hydrogen-bond donors, both link to the same acceptor atom, O1, forming chains along the b axis (Fig. 2).
The C3 carbon atom of the cyclohexane ring is disordered over two positions, with refined site occupancies of 0.743 (10) and 0.257 (10) for the major and minor components respectively.
For related literature, see: Ding et al. (2004); Zeng et al. (2006).
Data collection: SMART (Bruker, 2001); cell refinement: SAINT (Bruker, 2001); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: SHELXTL (Sheldrick, 2001).
C17H23N3O2S | F(000) = 1424 |
Mr = 333.44 | Dx = 1.326 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 2844 reflections |
a = 25.8379 (12) Å | θ = 0.0–0.0° |
b = 8.0874 (6) Å | µ = 0.21 mm−1 |
c = 20.5316 (10) Å | T = 297 K |
β = 128.857 (1)° | Block, colourless |
V = 3340.9 (3) Å3 | 0.30 × 0.20 × 0.20 mm |
Z = 8 |
Bruker SMART CCD area-detector diffractometer | 2623 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.049 |
Graphite monochromator | θmax = 27.0°, θmin = 2.0° |
φ and ω scans | h = −32→23 |
9964 measured reflections | k = −10→8 |
3637 independent reflections | l = −20→25 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.051 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.143 | H-atom parameters constrained |
S = 0.99 | w = 1/[σ2(Fo2) + (0.0826P)2] where P = (Fo2 + 2Fc2)/3 |
3637 reflections | (Δ/σ)max < 0.001 |
215 parameters | Δρmax = 0.33 e Å−3 |
4 restraints | Δρmin = −0.24 e Å−3 |
C17H23N3O2S | V = 3340.9 (3) Å3 |
Mr = 333.44 | Z = 8 |
Monoclinic, C2/c | Mo Kα radiation |
a = 25.8379 (12) Å | µ = 0.21 mm−1 |
b = 8.0874 (6) Å | T = 297 K |
c = 20.5316 (10) Å | 0.30 × 0.20 × 0.20 mm |
β = 128.857 (1)° |
Bruker SMART CCD area-detector diffractometer | 2623 reflections with I > 2σ(I) |
9964 measured reflections | Rint = 0.049 |
3637 independent reflections |
R[F2 > 2σ(F2)] = 0.051 | 4 restraints |
wR(F2) = 0.143 | H-atom parameters constrained |
S = 0.99 | Δρmax = 0.33 e Å−3 |
3637 reflections | Δρmin = −0.24 e Å−3 |
215 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
C1 | 0.29131 (10) | 0.5253 (3) | 0.53820 (12) | 0.0461 (5) | |
C2 | 0.33982 (11) | 0.5318 (3) | 0.63169 (12) | 0.0599 (6) | |
H2A | 0.3285 | 0.6226 | 0.6515 | 0.072* | 0.743 (10) |
H2B | 0.3373 | 0.4299 | 0.6545 | 0.072* | 0.743 (10) |
H2C | 0.3172 | 0.5666 | 0.6532 | 0.072* | 0.257 (10) |
H2D | 0.3582 | 0.4225 | 0.6537 | 0.072* | 0.257 (10) |
C3 | 0.40839 (16) | 0.5543 (7) | 0.66108 (19) | 0.0707 (15) | 0.743 (10) |
H3A | 0.4360 | 0.5934 | 0.7184 | 0.085* | 0.743 (10) |
H3B | 0.4254 | 0.4473 | 0.6612 | 0.085* | 0.743 (10) |
C4 | 0.41539 (13) | 0.6684 (4) | 0.61222 (16) | 0.0922 (10) | |
H4A | 0.4607 | 0.6601 | 0.6321 | 0.111* | 0.743 (10) |
H4B | 0.4097 | 0.7797 | 0.6245 | 0.111* | 0.743 (10) |
H4C | 0.4520 | 0.5921 | 0.6346 | 0.111* | 0.257 (10) |
H4D | 0.4339 | 0.7788 | 0.6237 | 0.111* | 0.257 (10) |
C5 | 0.36933 (10) | 0.6484 (3) | 0.51824 (12) | 0.0508 (5) | |
H5A | 0.3623 | 0.7553 | 0.4924 | 0.061* | |
H5B | 0.3899 | 0.5762 | 0.5026 | 0.061* | |
C6 | 0.30353 (9) | 0.5775 (2) | 0.48628 (11) | 0.0400 (4) | |
C7 | 0.24678 (9) | 0.5506 (2) | 0.39978 (11) | 0.0357 (4) | |
C8 | 0.19488 (9) | 0.4765 (2) | 0.39055 (11) | 0.0402 (4) | |
C9 | 0.12880 (9) | 0.4679 (2) | 0.25010 (11) | 0.0357 (4) | |
C10 | 0.23668 (9) | 0.6041 (2) | 0.32569 (11) | 0.0363 (4) | |
C11 | 0.15229 (9) | 0.6443 (2) | 0.17066 (11) | 0.0379 (4) | |
H11 | 0.1091 | 0.5967 | 0.1250 | 0.045* | |
C12 | 0.19807 (11) | 0.6124 (3) | 0.14938 (13) | 0.0533 (5) | |
H12A | 0.2397 | 0.6673 | 0.1894 | 0.080* | |
H12B | 0.1779 | 0.6540 | 0.0944 | 0.080* | |
H12C | 0.2055 | 0.4956 | 0.1509 | 0.080* | |
C13 | 0.14058 (11) | 0.8258 (2) | 0.17408 (13) | 0.0537 (6) | |
H13A | 0.1081 | 0.8383 | 0.1823 | 0.081* | |
H13B | 0.1247 | 0.8777 | 0.1225 | 0.081* | |
H13C | 0.1815 | 0.8769 | 0.2196 | 0.081* | |
C14 | 0.08494 (9) | 0.2799 (2) | 0.13577 (12) | 0.0456 (5) | |
H14A | 0.0984 | 0.1811 | 0.1697 | 0.055* | |
H14B | 0.1208 | 0.3114 | 0.1351 | 0.055* | |
C15 | 0.02315 (10) | 0.2451 (3) | 0.04815 (14) | 0.0559 (6) | |
H15A | 0.0119 | 0.3419 | 0.0136 | 0.067* | |
H15B | 0.0316 | 0.1545 | 0.0251 | 0.067* | |
C16 | −0.04365 (10) | 0.3330 (3) | 0.08135 (14) | 0.0597 (6) | |
H16A | −0.0808 | 0.3027 | 0.0796 | 0.072* | |
H16B | −0.0557 | 0.4325 | 0.0482 | 0.072* | |
C17 | 0.01619 (9) | 0.3681 (3) | 0.17061 (13) | 0.0503 (5) | |
H17A | 0.0064 | 0.4572 | 0.1930 | 0.060* | |
H17B | 0.0278 | 0.2706 | 0.2048 | 0.060* | |
C3' | 0.3938 (5) | 0.6511 (16) | 0.6589 (6) | 0.057 (3)* | 0.257 (10) |
H3'1 | 0.3794 | 0.7591 | 0.6624 | 0.068* | 0.257 (10) |
H3'2 | 0.4321 | 0.6209 | 0.7153 | 0.068* | 0.257 (10) |
N1 | 0.17404 (7) | 0.56023 (17) | 0.24993 (9) | 0.0339 (3) | |
N2 | 0.13614 (8) | 0.4282 (2) | 0.31659 (10) | 0.0430 (4) | |
N3 | 0.07162 (7) | 0.41505 (18) | 0.17194 (9) | 0.0370 (4) | |
O1 | 0.27571 (7) | 0.68684 (18) | 0.32496 (8) | 0.0513 (4) | |
O2 | −0.03148 (8) | 0.2038 (2) | 0.04583 (10) | 0.0647 (5) | |
S1 | 0.21228 (3) | 0.44392 (8) | 0.48531 (3) | 0.0554 (2) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0452 (12) | 0.0542 (12) | 0.0342 (10) | 0.0086 (9) | 0.0226 (9) | 0.0028 (9) |
C2 | 0.0643 (15) | 0.0727 (15) | 0.0326 (11) | 0.0115 (12) | 0.0255 (11) | 0.0046 (10) |
C3 | 0.053 (2) | 0.099 (4) | 0.0334 (16) | 0.0118 (19) | 0.0144 (15) | 0.0000 (17) |
C4 | 0.0549 (16) | 0.131 (3) | 0.0466 (14) | −0.0233 (16) | 0.0105 (13) | 0.0043 (16) |
C5 | 0.0391 (11) | 0.0591 (13) | 0.0406 (11) | −0.0013 (9) | 0.0185 (9) | −0.0060 (9) |
C6 | 0.0381 (10) | 0.0445 (10) | 0.0319 (9) | 0.0068 (8) | 0.0193 (8) | 0.0005 (8) |
C7 | 0.0351 (10) | 0.0403 (10) | 0.0308 (9) | 0.0037 (8) | 0.0202 (8) | 0.0007 (7) |
C8 | 0.0397 (10) | 0.0488 (11) | 0.0337 (10) | 0.0037 (8) | 0.0238 (9) | 0.0051 (8) |
C9 | 0.0309 (9) | 0.0392 (10) | 0.0365 (10) | 0.0021 (7) | 0.0209 (8) | 0.0026 (8) |
C10 | 0.0335 (9) | 0.0410 (10) | 0.0335 (9) | −0.0007 (8) | 0.0205 (8) | −0.0020 (8) |
C11 | 0.0387 (10) | 0.0445 (10) | 0.0271 (9) | −0.0030 (8) | 0.0190 (8) | 0.0005 (7) |
C12 | 0.0579 (13) | 0.0694 (14) | 0.0437 (11) | 0.0005 (11) | 0.0372 (11) | 0.0024 (10) |
C13 | 0.0650 (15) | 0.0458 (12) | 0.0430 (12) | 0.0059 (10) | 0.0304 (11) | 0.0058 (9) |
C14 | 0.0391 (11) | 0.0442 (11) | 0.0506 (12) | −0.0021 (8) | 0.0267 (10) | −0.0067 (9) |
C15 | 0.0489 (13) | 0.0605 (13) | 0.0537 (13) | −0.0130 (10) | 0.0299 (11) | −0.0156 (10) |
C16 | 0.0316 (11) | 0.0896 (17) | 0.0511 (13) | −0.0049 (11) | 0.0226 (10) | 0.0066 (12) |
C17 | 0.0344 (11) | 0.0707 (14) | 0.0484 (12) | −0.0034 (10) | 0.0272 (10) | 0.0022 (10) |
N1 | 0.0326 (8) | 0.0405 (8) | 0.0282 (7) | −0.0021 (6) | 0.0188 (6) | 0.0004 (6) |
N2 | 0.0382 (9) | 0.0552 (10) | 0.0371 (9) | −0.0031 (7) | 0.0243 (8) | 0.0032 (7) |
N3 | 0.0297 (8) | 0.0454 (8) | 0.0358 (8) | −0.0029 (7) | 0.0204 (7) | −0.0027 (7) |
O1 | 0.0419 (8) | 0.0699 (10) | 0.0402 (8) | −0.0162 (7) | 0.0248 (7) | −0.0002 (6) |
O2 | 0.0477 (9) | 0.0755 (11) | 0.0594 (10) | −0.0232 (8) | 0.0281 (8) | −0.0135 (8) |
S1 | 0.0508 (4) | 0.0828 (4) | 0.0367 (3) | −0.0002 (3) | 0.0294 (3) | 0.0086 (3) |
C1—C6 | 1.355 (3) | C10—O1 | 1.218 (2) |
C1—C2 | 1.496 (3) | C10—N1 | 1.416 (2) |
C1—S1 | 1.732 (2) | C11—N1 | 1.510 (2) |
C2—C3 | 1.481 (4) | C11—C13 | 1.510 (3) |
C2—C3' | 1.487 (7) | C11—C12 | 1.518 (3) |
C2—H2A | 0.9700 | C11—H11 | 0.9800 |
C2—H2B | 0.9700 | C12—H12A | 0.9600 |
C2—H2C | 0.9700 | C12—H12B | 0.9600 |
C2—H2D | 0.9700 | C12—H12C | 0.9600 |
C3—C4 | 1.455 (4) | C13—H13A | 0.9600 |
C3—H3A | 0.9700 | C13—H13B | 0.9600 |
C3—H3B | 0.9700 | C13—H13C | 0.9600 |
C4—C3' | 1.386 (7) | C14—N3 | 1.478 (2) |
C4—C5 | 1.511 (3) | C14—C15 | 1.503 (3) |
C4—H4A | 0.9700 | C14—H14A | 0.9700 |
C4—H4B | 0.9700 | C14—H14B | 0.9700 |
C4—H4C | 0.9700 | C15—O2 | 1.422 (3) |
C4—H4D | 0.9700 | C15—H15A | 0.9700 |
C5—C6 | 1.500 (3) | C15—H15B | 0.9700 |
C5—H5A | 0.9700 | C16—O2 | 1.417 (3) |
C5—H5B | 0.9700 | C16—C17 | 1.508 (3) |
C6—C7 | 1.443 (2) | C16—H16A | 0.9700 |
C7—C8 | 1.369 (3) | C16—H16B | 0.9700 |
C7—C10 | 1.439 (2) | C17—N3 | 1.465 (2) |
C8—N2 | 1.368 (2) | C17—H17A | 0.9700 |
C8—S1 | 1.7204 (19) | C17—H17B | 0.9700 |
C9—N2 | 1.295 (2) | C3'—H3'1 | 0.9700 |
C9—N1 | 1.389 (2) | C3'—H3'2 | 0.9700 |
C9—N3 | 1.402 (2) | ||
C6—C1—C2 | 125.3 (2) | N1—C9—N3 | 116.44 (15) |
C6—C1—S1 | 112.96 (15) | O1—C10—N1 | 120.56 (16) |
C2—C1—S1 | 121.78 (17) | O1—C10—C7 | 125.15 (16) |
C3—C2—C1 | 110.6 (2) | N1—C10—C7 | 114.20 (15) |
C3'—C2—C1 | 109.8 (4) | N1—C11—C13 | 109.73 (15) |
C3—C2—H2A | 109.5 | N1—C11—C12 | 113.80 (15) |
C3'—C2—H2A | 79.0 | C13—C11—C12 | 113.18 (17) |
C1—C2—H2A | 109.5 | N1—C11—H11 | 106.5 |
C3—C2—H2B | 109.5 | C13—C11—H11 | 106.5 |
C3'—C2—H2B | 134.5 | C12—C11—H11 | 106.5 |
C1—C2—H2B | 109.5 | C11—C12—H12A | 109.5 |
H2A—C2—H2B | 108.1 | C11—C12—H12B | 109.5 |
C3—C2—H2C | 133.4 | H12A—C12—H12B | 109.5 |
C3'—C2—H2C | 109.3 | C11—C12—H12C | 109.5 |
C1—C2—H2C | 109.6 | H12A—C12—H12C | 109.5 |
H2B—C2—H2C | 77.5 | H12B—C12—H12C | 109.5 |
C3'—C2—H2D | 110.3 | C11—C13—H13A | 109.5 |
C1—C2—H2D | 109.7 | C11—C13—H13B | 109.5 |
H2A—C2—H2D | 133.0 | H13A—C13—H13B | 109.5 |
H2C—C2—H2D | 108.1 | C11—C13—H13C | 109.5 |
C4—C3—C2 | 115.6 (3) | H13A—C13—H13C | 109.5 |
C4—C3—H3A | 108.4 | H13B—C13—H13C | 109.5 |
C2—C3—H3A | 108.4 | N3—C14—C15 | 109.40 (16) |
C4—C3—H3B | 108.4 | N3—C14—H14A | 109.8 |
C2—C3—H3B | 108.4 | C15—C14—H14A | 109.8 |
H3A—C3—H3B | 107.5 | N3—C14—H14B | 109.8 |
C2—C3—H4C | 145.5 | C15—C14—H14B | 109.8 |
H3A—C3—H4C | 102.5 | H14A—C14—H14B | 108.2 |
H3B—C3—H4C | 75.5 | O2—C15—C14 | 111.75 (18) |
C3'—C4—C5 | 122.4 (4) | O2—C15—H15A | 109.3 |
C3—C4—C5 | 118.3 (3) | C14—C15—H15A | 109.3 |
C3'—C4—H4A | 127.2 | O2—C15—H15B | 109.3 |
C3—C4—H4A | 107.7 | C14—C15—H15B | 109.3 |
C5—C4—H4A | 107.7 | H15A—C15—H15B | 107.9 |
C3—C4—H4B | 107.7 | O2—C16—C17 | 112.02 (18) |
C5—C4—H4B | 107.7 | O2—C16—H16A | 109.2 |
H4A—C4—H4B | 107.1 | C17—C16—H16A | 109.2 |
C3'—C4—H4C | 107.6 | O2—C16—H16B | 109.2 |
C5—C4—H4C | 106.9 | C17—C16—H16B | 109.2 |
H4B—C4—H4C | 136.7 | H16A—C16—H16B | 107.9 |
C3'—C4—H4D | 106.1 | N3—C17—C16 | 108.44 (17) |
C3—C4—H4D | 132.3 | N3—C17—H17A | 110.0 |
C5—C4—H4D | 106.4 | C16—C17—H17A | 110.0 |
H4C—C4—H4D | 106.5 | N3—C17—H17B | 110.0 |
C6—C5—C4 | 111.6 (2) | C16—C17—H17B | 110.0 |
C6—C5—H5A | 109.3 | H17A—C17—H17B | 108.4 |
C4—C5—H5A | 109.3 | C4—C3'—C2 | 119.7 (6) |
C6—C5—H5B | 109.3 | C4—C3'—H3'1 | 107.4 |
C4—C5—H5B | 109.3 | C2—C3'—H3'1 | 107.4 |
H5A—C5—H5B | 108.0 | C4—C3'—H3'2 | 107.4 |
C1—C6—C7 | 111.27 (18) | C2—C3'—H3'2 | 107.4 |
C1—C6—C5 | 122.30 (18) | H3'1—C3'—H3'2 | 106.9 |
C7—C6—C5 | 126.40 (18) | C9—N1—C10 | 121.04 (15) |
C8—C7—C10 | 118.22 (16) | C9—N1—C11 | 120.01 (14) |
C8—C7—C6 | 112.76 (17) | C10—N1—C11 | 117.85 (14) |
C10—C7—C6 | 128.74 (17) | C9—N2—C8 | 115.22 (16) |
N2—C8—C7 | 125.95 (17) | C9—N3—C17 | 114.59 (15) |
N2—C8—S1 | 122.18 (14) | C9—N3—C14 | 112.97 (14) |
C7—C8—S1 | 111.85 (14) | C17—N3—C14 | 109.38 (15) |
N2—C9—N1 | 124.68 (16) | C16—O2—C15 | 110.21 (16) |
N2—C9—N3 | 118.89 (16) | C8—S1—C1 | 91.12 (9) |
C6—C1—C2—C3 | −17.1 (4) | C3—C2—C3'—C4 | 63.4 (9) |
S1—C1—C2—C3 | 161.6 (3) | C1—C2—C3'—C4 | −34.4 (12) |
C6—C1—C2—C3' | 18.7 (6) | N2—C9—N1—C10 | 6.9 (3) |
S1—C1—C2—C3' | −162.5 (6) | N3—C9—N1—C10 | −172.92 (15) |
C3'—C2—C3—C4 | −55.1 (6) | N2—C9—N1—C11 | −160.82 (17) |
C1—C2—C3—C4 | 39.9 (5) | N3—C9—N1—C11 | 19.4 (2) |
C2—C3—C4—C3' | 58.0 (6) | O1—C10—N1—C9 | −179.11 (16) |
C2—C3—C4—C5 | −49.1 (5) | C7—C10—N1—C9 | −2.3 (2) |
C3'—C4—C5—C6 | −10.9 (8) | O1—C10—N1—C11 | −11.1 (2) |
C3—C4—C5—C6 | 29.6 (4) | C7—C10—N1—C11 | 165.67 (15) |
C2—C1—C6—C7 | 178.74 (18) | C13—C11—N1—C9 | 101.35 (19) |
S1—C1—C6—C7 | −0.1 (2) | C12—C11—N1—C9 | −130.68 (17) |
C2—C1—C6—C5 | 0.4 (3) | C13—C11—N1—C10 | −66.8 (2) |
S1—C1—C6—C5 | −178.42 (15) | C12—C11—N1—C10 | 61.2 (2) |
C4—C5—C6—C1 | −5.6 (3) | N1—C9—N2—C8 | −3.3 (3) |
C4—C5—C6—C7 | 176.3 (2) | N3—C9—N2—C8 | 176.48 (15) |
C1—C6—C7—C8 | −1.2 (2) | C7—C8—N2—C9 | −4.9 (3) |
C5—C6—C7—C8 | 177.02 (18) | S1—C8—N2—C9 | 176.89 (14) |
C1—C6—C7—C10 | 172.61 (18) | N2—C9—N3—C17 | 19.5 (2) |
C5—C6—C7—C10 | −9.2 (3) | N1—C9—N3—C17 | −160.67 (16) |
C10—C7—C8—N2 | 9.0 (3) | N2—C9—N3—C14 | −106.7 (2) |
C6—C7—C8—N2 | −176.43 (17) | N1—C9—N3—C14 | 73.2 (2) |
C10—C7—C8—S1 | −172.55 (13) | C16—C17—N3—C9 | 173.71 (17) |
C6—C7—C8—S1 | 2.0 (2) | C16—C17—N3—C14 | −58.3 (2) |
C8—C7—C10—O1 | 171.77 (18) | C15—C14—N3—C9 | −173.17 (16) |
C6—C7—C10—O1 | −1.8 (3) | C15—C14—N3—C17 | 57.9 (2) |
C8—C7—C10—N1 | −4.9 (2) | C17—C16—O2—C15 | −58.6 (2) |
C6—C7—C10—N1 | −178.39 (16) | C14—C15—O2—C16 | 57.4 (2) |
N3—C14—C15—O2 | −57.5 (2) | N2—C8—S1—C1 | 176.76 (17) |
O2—C16—C17—N3 | 59.4 (2) | C7—C8—S1—C1 | −1.72 (15) |
C3—C4—C3'—C2 | −61.3 (8) | C6—C1—S1—C8 | 1.03 (16) |
C5—C4—C3'—C2 | 32.8 (14) | C2—C1—S1—C8 | −177.87 (18) |
D—H···A | D—H | H···A | D···A | D—H···A |
C13—H13C···O1 | 0.96 | 2.52 | 3.079 (3) | 117 |
C12—H12A···O1 | 0.96 | 2.32 | 2.882 (2) | 117 |
C11—H11···N3 | 0.98 | 2.28 | 2.802 (2) | 112 |
C14—H14B···O1i | 0.97 | 2.47 | 3.246 (2) | 137 |
C12—H12C···O1i | 0.96 | 2.53 | 3.483 (3) | 170 |
Symmetry code: (i) −x+1/2, y−1/2, −z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C17H23N3O2S |
Mr | 333.44 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 297 |
a, b, c (Å) | 25.8379 (12), 8.0874 (6), 20.5316 (10) |
β (°) | 128.857 (1) |
V (Å3) | 3340.9 (3) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.21 |
Crystal size (mm) | 0.30 × 0.20 × 0.20 |
Data collection | |
Diffractometer | Bruker SMART CCD area-detector |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 9964, 3637, 2623 |
Rint | 0.049 |
(sin θ/λ)max (Å−1) | 0.639 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.051, 0.143, 0.99 |
No. of reflections | 3637 |
No. of parameters | 215 |
No. of restraints | 4 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.33, −0.24 |
Computer programs: SMART (Bruker, 2001), SAINT (Bruker, 2001), SAINT, SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), PLATON (Spek, 2003), SHELXTL (Sheldrick, 2001).
D—H···A | D—H | H···A | D···A | D—H···A |
C13—H13C···O1 | 0.96 | 2.52 | 3.079 (3) | 117.0 |
C12—H12A···O1 | 0.96 | 2.32 | 2.882 (2) | 116.6 |
C11—H11···N3 | 0.98 | 2.28 | 2.802 (2) | 112.3 |
C14—H14B···O1i | 0.97 | 2.47 | 3.246 (2) | 137.2 |
C12—H12C···O1i | 0.96 | 2.53 | 3.483 (3) | 170.4 |
Symmetry code: (i) −x+1/2, y−1/2, −z+1/2. |
Pyrimidine derivatives are attracting the increasing attention of the synthetic community because of the important role played by such systems in many natural products, antibiotics and drugs (Ding et al., 2004). In recent years, we have been engaged in the preparation of derivatives of heterocycles via the aza-Wittig reaction. The title compound, (I), was synthesized and structurally characterized in this context.
In the fused heterobicyclic ring of the molecule, bond lengths and angles (Table 1) are similar to those observed in closely related structures (Zeng et al., 2006). All ring atoms in thienopyrimidine system are essentially coplanar. The cyclohexane ring adopts a half-chair conformation, while the pyrimidinone ring is in standard chair conformation.
The crystal packing is stabilized by intra- and intermolecular hydrogen bonding interactions (Table 2). Atoms C12 and C14, as hydrogen-bond donors, both link to the same acceptor atom, O1, forming chains along the b axis (Fig. 2).
The C3 carbon atom of the cyclohexane ring is disordered over two positions, with refined site occupancies of 0.743 (10) and 0.257 (10) for the major and minor components respectively.