Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536807049823/si2036sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536807049823/si2036Isup2.hkl |
CCDC reference: 669138
Key indicators
- Single-crystal X-ray study
- T = 100 K
- Mean (C-C) = 0.002 Å
- R factor = 0.035
- wR factor = 0.097
- Data-to-parameter ratio = 14.1
checkCIF/PLATON results
No syntax errors found
Alert level G REFLT03_ALERT_4_G Please check that the estimate of the number of Friedel pairs is correct. If it is not, please give the correct count in the _publ_section_exptl_refinement section of the submitted CIF. From the CIF: _diffrn_reflns_theta_max 30.00 From the CIF: _reflns_number_total 2709 Count of symmetry unique reflns 2710 Completeness (_total/calc) 99.96% TEST3: Check Friedels for noncentro structure Estimate of Friedel pairs measured 0 Fraction of Friedel pairs measured 0.000 Are heavy atom types Z>Si present no PLAT791_ALERT_1_G Confirm the Absolute Configuration of C4 = . R PLAT791_ALERT_1_G Confirm the Absolute Configuration of C5 = . S PLAT791_ALERT_1_G Confirm the Absolute Configuration of C8 = . S PLAT791_ALERT_1_G Confirm the Absolute Configuration of C9 = . R PLAT791_ALERT_1_G Confirm the Absolute Configuration of C10 = . S PLAT791_ALERT_1_G Confirm the Absolute Configuration of C13 = . R
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 0 ALERT level C = Check and explain 7 ALERT level G = General alerts; check 6 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 0 ALERT type 2 Indicator that the structure model may be wrong or deficient 0 ALERT type 3 Indicator that the structure quality may be low 1 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
The air-dried roots of Bruguiera cylindrica (6.0 kg) were chopped and extracted with CH2Cl2 (2 x 22 l) for one week at room temperature. Removal of the solvent from CH2Cl2 extract under reduced pressure gave a yellow viscous residue (38.5 g) which was subjected to quick column chromatography over siliga gel using solvents of increasing polarity from n-hexane through EtOAc to afford 14 fractions (F1—F14). Fraction F6 was further separated by quick column chromatography using CH2Cl2-acetone (9:1) to give title compound (11.8 mg). Colorless plate-shaped single crystals of the title compound were recrystallized from n-hexane after several days [Mp. 387–388 K].
All H atoms were positioned geometrically and allowed to ride on their parent atoms, with the C—H distances in the range 0.93–0.98 Å. The Uiso values were constrained to be 1.5Ueq of the carrier atom for methyl H atoms and 1.2Ueq for the remaining H atoms. A rotating group model was used for the methyl groups. A total of 2009 Friedel pairs were merged before final refinement as there is no large anomalous dispersion for the determination of the absolute configuration.
The title ent-kaurane compound, known as ent-kaur-16-ene-19-al, was isolated from the roots of Bruguiera cylindrica (Rhizophoraceae), a mangrove plant which was found in South East Asia. In our continuing research on bioactive compounds from mangrove sources, we have studied the chemical constituents from the roots of Bruguiera cylindrica (Rhizophoraceae) to search for the bioactive components. We have previously reported the crystal structure of the ent-kaur-16-ene-13,19-diol which was isolated from this plant (Salae et al., 2007). We herein report the crystal structure of the title compound which has an inhibitory activity on vascular smooth muscle contraction (Müller et al., 2003).
The molecule of the title compound contains a fused four-ring system A/B/C/D (Scheme 1). The A/B ring junction is trans-fused, B/C and C/D are cis-fused (Fig. 1). The three cyclohexane rings has the standard chair conformations; the cyclopentane ring adopts an envelope conformation with atom C14 displaced from the C8/C15/C16/C13 plane by -0.2891 (14) Å, and with puckering parameters (Cremer & Pople, 1975) Q = 0.459 (1) Å and φ = 30.35 (18)°. The methylene group is planarly attached to cyclopentane ring at atom C16. The bond angles around C16 are indicative of sp2 hybridization for these atoms, with the geometric parameters being given in the supplementary materials. The orientation of the aldehyde group can be indicated by the torsion angles C3–C4–C19–O1 = -16.3 (2)° and C5–C4–C19–O1 = -140.60((15)°. All bond lengths and angles are within normal ranges (Allen et al., 1987) and comparable to the closely related structure ent-Kaur-16-ene-13,19-diol (Salae et al., 2007). The title structure is isomorphous to ent-Kaur-15-ene-19-al (Karle, 1972) and these two structures crystallized out in the same space group and have almost identical unit-cell dimensions. The differences in these two structures are that in the structure of ent-Kaur-15-ene-19-al, the functional group attached to C16 is a methyl group and C15—C16 is a C═C bond. The origins of the structures are different; ent-Kaur-15-ene-19-al was isolated from the tubers of Espeelita weddeli, a Composita which grows at 10,0000 feet in the Venezuelan Andes.
In the crystal packing of the title compound, the molecules are packed by Van de Waals interactions (Fig. 2).
For the values of bond lengths and angles, see Allen et al. (1987). For literature on ring conformations, see Cremer & Pople (1975). For further details of ent-kaurane diterpenes and their bioactive properties, see, for example: Karle (1972); Müller et al. (2003); Salae et al. (2007).
Data collection: APEX2 (Bruker, 2005); cell refinement: APEX2 (Bruker, 2005); data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXTL (Sheldrick, 1998); program(s) used to refine structure: SHELXTL (Sheldrick, 1998); molecular graphics: SHELXTL (Sheldrick, 1998); software used to prepare material for publication: SHELXTL (Sheldrick, 1998) and PLATON (Spek, 2003).
C20H30O | Dx = 1.171 Mg m−3 |
Mr = 286.44 | Melting point = 387–388 K |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 2709 reflections |
a = 6.3126 (2) Å | θ = 1.8–30.0° |
b = 11.2823 (4) Å | µ = 0.07 mm−1 |
c = 22.8044 (7) Å | T = 100 K |
V = 1624.14 (9) Å3 | Plate, colorless |
Z = 4 | 0.56 × 0.40 × 0.13 mm |
F(000) = 632 |
Bruker SMART APEXII CCD area-detector diffractometer | 2709 independent reflections |
Radiation source: fine-focus sealed tube | 2571 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.029 |
Detector resolution: 8.33 pixels mm-1 | θmax = 30.0°, θmin = 1.8° |
ω scans | h = −8→8 |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | k = −14→15 |
Tmin = 0.952, Tmax = 0.991 | l = −27→32 |
20475 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.035 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.097 | H-atom parameters constrained |
S = 1.07 | w = 1/[σ2(Fo2) + (0.0597P)2 + 0.215P] where P = (Fo2 + 2Fc2)/3 |
2709 reflections | (Δ/σ)max = 0.001 |
192 parameters | Δρmax = 0.31 e Å−3 |
0 restraints | Δρmin = −0.17 e Å−3 |
C20H30O | V = 1624.14 (9) Å3 |
Mr = 286.44 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 6.3126 (2) Å | µ = 0.07 mm−1 |
b = 11.2823 (4) Å | T = 100 K |
c = 22.8044 (7) Å | 0.56 × 0.40 × 0.13 mm |
Bruker SMART APEXII CCD area-detector diffractometer | 2709 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | 2571 reflections with I > 2σ(I) |
Tmin = 0.952, Tmax = 0.991 | Rint = 0.029 |
20475 measured reflections |
R[F2 > 2σ(F2)] = 0.035 | 0 restraints |
wR(F2) = 0.097 | H-atom parameters constrained |
S = 1.07 | Δρmax = 0.31 e Å−3 |
2709 reflections | Δρmin = −0.17 e Å−3 |
192 parameters |
Experimental. The low-temparture data was collected with the Oxford Cyrosystem Cobra low-temperature attachment. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.34848 (17) | 0.85293 (11) | 0.74695 (5) | 0.0330 (3) | |
C1 | 0.8278 (2) | 0.73642 (11) | 0.86634 (6) | 0.0228 (3) | |
H1A | 0.9792 | 0.7263 | 0.8610 | 0.027* | |
H1B | 0.7863 | 0.6914 | 0.9007 | 0.027* | |
C2 | 0.7129 (3) | 0.68629 (12) | 0.81270 (7) | 0.0284 (3) | |
H2A | 0.7555 | 0.6045 | 0.8068 | 0.034* | |
H2B | 0.5614 | 0.6874 | 0.8197 | 0.034* | |
C3 | 0.7620 (2) | 0.75744 (14) | 0.75763 (6) | 0.0274 (3) | |
H3A | 0.6761 | 0.7275 | 0.7256 | 0.033* | |
H3B | 0.9095 | 0.7455 | 0.7472 | 0.033* | |
C4 | 0.7209 (2) | 0.89086 (13) | 0.76445 (6) | 0.0204 (3) | |
C5 | 0.8351 (2) | 0.93785 (11) | 0.82017 (5) | 0.0169 (2) | |
H5A | 0.9856 | 0.9216 | 0.8133 | 0.020* | |
C6 | 0.8231 (2) | 1.07270 (12) | 0.82971 (6) | 0.0215 (3) | |
H6A | 0.8473 | 1.1135 | 0.7929 | 0.026* | |
H6B | 0.6834 | 1.0942 | 0.8439 | 0.026* | |
C7 | 0.9906 (2) | 1.10943 (12) | 0.87436 (6) | 0.0226 (3) | |
H7A | 0.9862 | 1.1948 | 0.8793 | 0.027* | |
H7B | 1.1296 | 1.0886 | 0.8595 | 0.027* | |
C8 | 0.9579 (2) | 1.05008 (11) | 0.93396 (5) | 0.0163 (2) | |
C9 | 0.93310 (19) | 0.91333 (11) | 0.92681 (5) | 0.0150 (2) | |
H9A | 1.0735 | 0.8860 | 0.9145 | 0.018* | |
C10 | 0.78062 (19) | 0.86948 (11) | 0.87740 (5) | 0.0153 (2) | |
C11 | 0.8994 (2) | 0.85560 (11) | 0.98797 (6) | 0.0190 (2) | |
H11A | 0.8348 | 0.7785 | 0.9821 | 0.023* | |
H11B | 1.0374 | 0.8425 | 1.0055 | 0.023* | |
C12 | 0.7633 (2) | 0.92480 (12) | 1.03200 (6) | 0.0218 (3) | |
H12A | 0.7859 | 0.8932 | 1.0711 | 0.026* | |
H12B | 0.6148 | 0.9147 | 1.0223 | 0.026* | |
C13 | 0.8187 (2) | 1.05776 (12) | 1.03149 (6) | 0.0198 (3) | |
H13A | 0.7411 | 1.1021 | 1.0616 | 0.024* | |
C14 | 0.7751 (2) | 1.10491 (11) | 0.96959 (6) | 0.0199 (3) | |
H14A | 0.7801 | 1.1908 | 0.9685 | 0.024* | |
H14B | 0.6385 | 1.0784 | 0.9552 | 0.024* | |
C15 | 1.1454 (2) | 1.07505 (12) | 0.97590 (6) | 0.0218 (3) | |
H15A | 1.2538 | 1.0148 | 0.9715 | 0.026* | |
H15B | 1.2076 | 1.1518 | 0.9674 | 0.026* | |
C16 | 1.0568 (2) | 1.07321 (12) | 1.03703 (6) | 0.0204 (3) | |
C17 | 1.1674 (3) | 1.08212 (14) | 1.08712 (6) | 0.0282 (3) | |
H17A | 1.3140 | 1.0904 | 1.0859 | 0.034* | |
H17B | 1.0975 | 1.0800 | 1.1230 | 0.034* | |
C18 | 0.8071 (3) | 0.95405 (17) | 0.70911 (6) | 0.0318 (4) | |
H18A | 0.7532 | 0.9155 | 0.6747 | 0.048* | |
H18B | 0.9590 | 0.9505 | 0.7090 | 0.048* | |
H18C | 0.7624 | 1.0354 | 0.7093 | 0.048* | |
C19 | 0.4858 (2) | 0.91868 (14) | 0.76388 (6) | 0.0230 (3) | |
H19A | 0.4442 | 0.9926 | 0.7777 | 0.028* | |
C20 | 0.5454 (2) | 0.88135 (11) | 0.89396 (6) | 0.0178 (2) | |
H20A | 0.4606 | 0.8382 | 0.8663 | 0.027* | |
H20B | 0.5056 | 0.9635 | 0.8933 | 0.027* | |
H20C | 0.5233 | 0.8498 | 0.9326 | 0.027* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0191 (5) | 0.0504 (7) | 0.0296 (6) | 0.0000 (5) | −0.0040 (4) | −0.0031 (5) |
C1 | 0.0265 (7) | 0.0165 (5) | 0.0254 (6) | 0.0048 (5) | −0.0092 (5) | −0.0052 (5) |
C2 | 0.0320 (8) | 0.0205 (6) | 0.0325 (7) | 0.0043 (6) | −0.0107 (6) | −0.0108 (5) |
C3 | 0.0225 (6) | 0.0354 (8) | 0.0243 (7) | 0.0058 (6) | −0.0040 (6) | −0.0143 (6) |
C4 | 0.0164 (5) | 0.0303 (7) | 0.0144 (5) | 0.0014 (5) | −0.0002 (4) | −0.0027 (5) |
C5 | 0.0153 (5) | 0.0217 (5) | 0.0136 (5) | 0.0006 (5) | 0.0016 (4) | −0.0018 (4) |
C6 | 0.0270 (6) | 0.0209 (6) | 0.0166 (6) | −0.0025 (5) | 0.0017 (5) | 0.0045 (5) |
C7 | 0.0300 (7) | 0.0211 (6) | 0.0168 (6) | −0.0074 (5) | 0.0040 (5) | 0.0018 (5) |
C8 | 0.0192 (5) | 0.0154 (5) | 0.0141 (5) | −0.0026 (5) | 0.0027 (4) | −0.0004 (4) |
C9 | 0.0152 (5) | 0.0151 (5) | 0.0149 (5) | 0.0006 (4) | −0.0003 (4) | −0.0006 (4) |
C10 | 0.0150 (5) | 0.0149 (5) | 0.0160 (5) | 0.0011 (4) | −0.0006 (4) | −0.0005 (4) |
C11 | 0.0221 (6) | 0.0162 (5) | 0.0187 (5) | −0.0013 (5) | −0.0050 (5) | 0.0031 (5) |
C12 | 0.0226 (6) | 0.0264 (6) | 0.0163 (5) | −0.0060 (5) | 0.0011 (5) | 0.0045 (5) |
C13 | 0.0219 (6) | 0.0228 (6) | 0.0148 (5) | −0.0006 (5) | 0.0042 (5) | −0.0029 (5) |
C14 | 0.0258 (6) | 0.0165 (5) | 0.0173 (5) | 0.0038 (5) | 0.0032 (5) | −0.0020 (4) |
C15 | 0.0229 (6) | 0.0221 (6) | 0.0204 (6) | −0.0075 (5) | 0.0025 (5) | −0.0045 (5) |
C16 | 0.0238 (6) | 0.0181 (6) | 0.0192 (6) | −0.0043 (5) | 0.0035 (5) | −0.0026 (5) |
C17 | 0.0294 (7) | 0.0338 (7) | 0.0215 (6) | −0.0074 (6) | 0.0001 (6) | −0.0002 (6) |
C18 | 0.0256 (7) | 0.0556 (10) | 0.0144 (6) | −0.0045 (7) | 0.0025 (5) | −0.0005 (6) |
C19 | 0.0196 (6) | 0.0338 (7) | 0.0156 (6) | 0.0051 (6) | −0.0003 (5) | 0.0016 (5) |
C20 | 0.0154 (5) | 0.0207 (6) | 0.0173 (6) | −0.0014 (5) | 0.0008 (4) | 0.0020 (5) |
O1—C19 | 1.2043 (19) | C9—C10 | 1.5625 (17) |
C1—C2 | 1.5304 (19) | C9—H9A | 0.9800 |
C1—C10 | 1.5511 (17) | C10—C20 | 1.5378 (17) |
C1—H1A | 0.9700 | C11—C12 | 1.5350 (19) |
C1—H1B | 0.9700 | C11—H11A | 0.9700 |
C2—C3 | 1.522 (2) | C11—H11B | 0.9700 |
C2—H2A | 0.9700 | C12—C13 | 1.5403 (18) |
C2—H2B | 0.9700 | C12—H12A | 0.9700 |
C3—C4 | 1.535 (2) | C12—H12B | 0.9700 |
C3—H3A | 0.9700 | C13—C16 | 1.519 (2) |
C3—H3B | 0.9700 | C13—C14 | 1.5333 (18) |
C4—C19 | 1.5169 (19) | C13—H13A | 0.9800 |
C4—C18 | 1.548 (2) | C14—H14A | 0.9700 |
C4—C5 | 1.5543 (17) | C14—H14B | 0.9700 |
C5—C6 | 1.5388 (18) | C15—C16 | 1.5020 (18) |
C5—C10 | 1.5545 (17) | C15—H15A | 0.9700 |
C5—H5A | 0.9800 | C15—H15B | 0.9700 |
C6—C7 | 1.525 (2) | C16—C17 | 1.343 (2) |
C6—H6A | 0.9700 | C17—H17A | 0.9300 |
C6—H6B | 0.9700 | C17—H17B | 0.9300 |
C7—C8 | 1.5291 (17) | C18—H18A | 0.9600 |
C7—H7A | 0.9700 | C18—H18B | 0.9600 |
C7—H7B | 0.9700 | C18—H18C | 0.9600 |
C8—C14 | 1.5409 (18) | C19—H19A | 0.9300 |
C8—C15 | 1.5475 (19) | C20—H20A | 0.9600 |
C8—C9 | 1.5593 (16) | C20—H20B | 0.9600 |
C9—C11 | 1.5538 (17) | C20—H20C | 0.9600 |
C2—C1—C10 | 113.36 (11) | C1—C10—C5 | 107.53 (10) |
C2—C1—H1A | 108.9 | C20—C10—C9 | 112.95 (10) |
C10—C1—H1A | 108.9 | C1—C10—C9 | 107.78 (10) |
C2—C1—H1B | 108.9 | C5—C10—C9 | 108.19 (10) |
C10—C1—H1B | 108.9 | C12—C11—C9 | 116.78 (10) |
H1A—C1—H1B | 107.7 | C12—C11—H11A | 108.1 |
C3—C2—C1 | 111.59 (12) | C9—C11—H11A | 108.1 |
C3—C2—H2A | 109.3 | C12—C11—H11B | 108.1 |
C1—C2—H2A | 109.3 | C9—C11—H11B | 108.1 |
C3—C2—H2B | 109.3 | H11A—C11—H11B | 107.3 |
C1—C2—H2B | 109.3 | C11—C12—C13 | 111.30 (11) |
H2A—C2—H2B | 108.0 | C11—C12—H12A | 109.4 |
C2—C3—C4 | 113.52 (11) | C13—C12—H12A | 109.4 |
C2—C3—H3A | 108.9 | C11—C12—H12B | 109.4 |
C4—C3—H3A | 108.9 | C13—C12—H12B | 109.4 |
C2—C3—H3B | 108.9 | H12A—C12—H12B | 108.0 |
C4—C3—H3B | 108.9 | C16—C13—C14 | 102.38 (11) |
H3A—C3—H3B | 107.7 | C16—C13—C12 | 109.62 (12) |
C19—C4—C3 | 111.56 (12) | C14—C13—C12 | 107.71 (11) |
C19—C4—C18 | 103.98 (12) | C16—C13—H13A | 112.2 |
C3—C4—C18 | 108.03 (12) | C14—C13—H13A | 112.2 |
C19—C4—C5 | 112.98 (11) | C12—C13—H13A | 112.2 |
C3—C4—C5 | 109.80 (11) | C13—C14—C8 | 102.23 (10) |
C18—C4—C5 | 110.25 (11) | C13—C14—H14A | 111.3 |
C6—C5—C4 | 115.46 (11) | C8—C14—H14A | 111.3 |
C6—C5—C10 | 111.16 (10) | C13—C14—H14B | 111.3 |
C4—C5—C10 | 114.48 (11) | C8—C14—H14B | 111.3 |
C6—C5—H5A | 104.8 | H14A—C14—H14B | 109.2 |
C4—C5—H5A | 104.8 | C16—C15—C8 | 106.65 (11) |
C10—C5—H5A | 104.8 | C16—C15—H15A | 110.4 |
C7—C6—C5 | 109.20 (11) | C8—C15—H15A | 110.4 |
C7—C6—H6A | 109.8 | C16—C15—H15B | 110.4 |
C5—C6—H6A | 109.8 | C8—C15—H15B | 110.4 |
C7—C6—H6B | 109.8 | H15A—C15—H15B | 108.6 |
C5—C6—H6B | 109.8 | C17—C16—C15 | 126.52 (13) |
H6A—C6—H6B | 108.3 | C17—C16—C13 | 126.46 (13) |
C6—C7—C8 | 112.39 (11) | C15—C16—C13 | 107.02 (12) |
C6—C7—H7A | 109.1 | C16—C17—H17A | 120.0 |
C8—C7—H7A | 109.1 | C16—C17—H17B | 120.0 |
C6—C7—H7B | 109.1 | H17A—C17—H17B | 120.0 |
C8—C7—H7B | 109.1 | C4—C18—H18A | 109.5 |
H7A—C7—H7B | 107.9 | C4—C18—H18B | 109.5 |
C7—C8—C14 | 113.20 (11) | H18A—C18—H18B | 109.5 |
C7—C8—C15 | 111.50 (11) | C4—C18—H18C | 109.5 |
C14—C8—C15 | 100.00 (10) | H18A—C18—H18C | 109.5 |
C7—C8—C9 | 110.73 (10) | H18B—C18—H18C | 109.5 |
C14—C8—C9 | 112.16 (10) | O1—C19—C4 | 125.40 (14) |
C15—C8—C9 | 108.75 (10) | O1—C19—H19A | 117.3 |
C11—C9—C8 | 109.56 (10) | C4—C19—H19A | 117.3 |
C11—C9—C10 | 115.49 (10) | C10—C20—H20A | 109.5 |
C8—C9—C10 | 116.78 (10) | C10—C20—H20B | 109.5 |
C11—C9—H9A | 104.5 | H20A—C20—H20B | 109.5 |
C8—C9—H9A | 104.5 | C10—C20—H20C | 109.5 |
C10—C9—H9A | 104.5 | H20A—C20—H20C | 109.5 |
C20—C10—C1 | 108.04 (11) | H20B—C20—H20C | 109.5 |
C20—C10—C5 | 112.13 (10) | ||
C10—C1—C2—C3 | 55.54 (17) | C6—C5—C10—C9 | −55.86 (13) |
C1—C2—C3—C4 | −53.27 (17) | C4—C5—C10—C9 | 171.08 (10) |
C2—C3—C4—C19 | −74.39 (16) | C11—C9—C10—C20 | 54.39 (14) |
C2—C3—C4—C18 | 171.92 (12) | C8—C9—C10—C20 | −76.59 (14) |
C2—C3—C4—C5 | 51.65 (16) | C11—C9—C10—C1 | −64.88 (13) |
C19—C4—C5—C6 | −59.68 (16) | C8—C9—C10—C1 | 164.13 (11) |
C3—C4—C5—C6 | 175.09 (11) | C11—C9—C10—C5 | 179.12 (10) |
C18—C4—C5—C6 | 56.18 (15) | C8—C9—C10—C5 | 48.13 (13) |
C19—C4—C5—C10 | 71.32 (15) | C8—C9—C11—C12 | 37.63 (15) |
C3—C4—C5—C10 | −53.91 (14) | C10—C9—C11—C12 | −96.71 (13) |
C18—C4—C5—C10 | −172.82 (12) | C9—C11—C12—C13 | −42.84 (16) |
C4—C5—C6—C7 | −163.78 (11) | C11—C12—C13—C16 | −50.07 (15) |
C10—C5—C6—C7 | 63.65 (14) | C11—C12—C13—C14 | 60.58 (14) |
C5—C6—C7—C8 | −60.81 (15) | C16—C13—C14—C8 | 43.12 (12) |
C6—C7—C8—C14 | −75.83 (14) | C12—C13—C14—C8 | −72.41 (13) |
C6—C7—C8—C15 | 172.33 (11) | C7—C8—C14—C13 | −163.78 (11) |
C6—C7—C8—C9 | 51.10 (15) | C15—C8—C14—C13 | −45.06 (12) |
C7—C8—C9—C11 | −179.80 (11) | C9—C8—C14—C13 | 70.04 (13) |
C14—C8—C9—C11 | −52.29 (14) | C7—C8—C15—C16 | 150.54 (11) |
C15—C8—C9—C11 | 57.36 (13) | C14—C8—C15—C16 | 30.58 (13) |
C7—C8—C9—C10 | −46.11 (15) | C9—C8—C15—C16 | −87.08 (12) |
C14—C8—C9—C10 | 81.39 (13) | C8—C15—C16—C17 | 174.74 (14) |
C15—C8—C9—C10 | −168.96 (10) | C8—C15—C16—C13 | −4.54 (14) |
C2—C1—C10—C20 | 66.22 (15) | C14—C13—C16—C17 | 157.01 (14) |
C2—C1—C10—C5 | −55.00 (15) | C12—C13—C16—C17 | −88.85 (17) |
C2—C1—C10—C9 | −171.42 (12) | C14—C13—C16—C15 | −23.71 (14) |
C6—C5—C10—C20 | 69.36 (14) | C12—C13—C16—C15 | 90.43 (13) |
C4—C5—C10—C20 | −63.70 (14) | C3—C4—C19—O1 | −16.3 (2) |
C6—C5—C10—C1 | −172.01 (11) | C18—C4—C19—O1 | 99.86 (17) |
C4—C5—C10—C1 | 54.93 (14) | C5—C4—C19—O1 | −140.60 (15) |
Experimental details
Crystal data | |
Chemical formula | C20H30O |
Mr | 286.44 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 100 |
a, b, c (Å) | 6.3126 (2), 11.2823 (4), 22.8044 (7) |
V (Å3) | 1624.14 (9) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.07 |
Crystal size (mm) | 0.56 × 0.40 × 0.13 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD area-detector |
Absorption correction | Multi-scan (SADABS; Bruker, 2005) |
Tmin, Tmax | 0.952, 0.991 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 20475, 2709, 2571 |
Rint | 0.029 |
(sin θ/λ)max (Å−1) | 0.703 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.035, 0.097, 1.07 |
No. of reflections | 2709 |
No. of parameters | 192 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.31, −0.17 |
Computer programs: APEX2 (Bruker, 2005), SAINT (Bruker, 2005), SHELXTL (Sheldrick, 1998) and PLATON (Spek, 2003).
The title ent-kaurane compound, known as ent-kaur-16-ene-19-al, was isolated from the roots of Bruguiera cylindrica (Rhizophoraceae), a mangrove plant which was found in South East Asia. In our continuing research on bioactive compounds from mangrove sources, we have studied the chemical constituents from the roots of Bruguiera cylindrica (Rhizophoraceae) to search for the bioactive components. We have previously reported the crystal structure of the ent-kaur-16-ene-13,19-diol which was isolated from this plant (Salae et al., 2007). We herein report the crystal structure of the title compound which has an inhibitory activity on vascular smooth muscle contraction (Müller et al., 2003).
The molecule of the title compound contains a fused four-ring system A/B/C/D (Scheme 1). The A/B ring junction is trans-fused, B/C and C/D are cis-fused (Fig. 1). The three cyclohexane rings has the standard chair conformations; the cyclopentane ring adopts an envelope conformation with atom C14 displaced from the C8/C15/C16/C13 plane by -0.2891 (14) Å, and with puckering parameters (Cremer & Pople, 1975) Q = 0.459 (1) Å and φ = 30.35 (18)°. The methylene group is planarly attached to cyclopentane ring at atom C16. The bond angles around C16 are indicative of sp2 hybridization for these atoms, with the geometric parameters being given in the supplementary materials. The orientation of the aldehyde group can be indicated by the torsion angles C3–C4–C19–O1 = -16.3 (2)° and C5–C4–C19–O1 = -140.60((15)°. All bond lengths and angles are within normal ranges (Allen et al., 1987) and comparable to the closely related structure ent-Kaur-16-ene-13,19-diol (Salae et al., 2007). The title structure is isomorphous to ent-Kaur-15-ene-19-al (Karle, 1972) and these two structures crystallized out in the same space group and have almost identical unit-cell dimensions. The differences in these two structures are that in the structure of ent-Kaur-15-ene-19-al, the functional group attached to C16 is a methyl group and C15—C16 is a C═C bond. The origins of the structures are different; ent-Kaur-15-ene-19-al was isolated from the tubers of Espeelita weddeli, a Composita which grows at 10,0000 feet in the Venezuelan Andes.
In the crystal packing of the title compound, the molecules are packed by Van de Waals interactions (Fig. 2).