supplementary materials

(2,4-Dioxo-1,2,3,4-tetrahydropyrimidine-5-carboxylato-
2O4,O5)(4-oxido-2-oxo-1,2-dihydropyrimidine-5-carboxylato-
2O4,O5)bis(1,10-phenanthroline-
2N,N')yttrium(III) dihydrate
In the title compound, [Y(C5H2N2O4)(C5H3N2O4)(C12H8N2)2]·2H2O, the YIII ion lies on a twofold rotation axis and exhibits a distorted square-antiprismatic coordination geometry. It is chelated by two 1,10-phenanthroline ligands, a 2,4-dioxo-1,2,3,4-tetrahydropyrimidine-5-carboxylate monoanion and a 4-oxido-2-oxo-1,2-dihydropyrimidine-5-carboxylate dianion. The H atom involved in an N-H
N hydrogen bond between the 1,2-dihydropyrimidine units has half occupancy and is disordered around a twofold rotation axis.
A mixture of 2,4-dihydroxypyrimidine-5-carboxylic acid (0.0312 g, 0.2 mmol),
YCl3.6H2O (0.0607 g, 0.2 mmol), phenanthroline dihydrate (0.0396 g, 0.2 mmol), NaOH (0.0160 g, 0.4 mmol) and water (15 ml) was sealed in a 25 ml,
Teflon-lined stainless-steel reactor and heated to 383 K for 120 h. It was
then cooled over 48 h to give colourless crystals in 70% yield. Elemental
analysis calculated for C34H25N8O10Y: C 51.40, H 3.17, N 14.10%;
found: C 51.77, H 3.29, N 14.49%.
H atoms of the water molecule were located in a difference Fourier map and
allowed to ride on their parent atom [Uiso(H) = 1.5Ueq(O)].
Other H atoms were placed at calculated positions (C—H = 0.93 Å and N—H =
0.86 Å) and were included in the refinement in the riding model
approximation, with Uiso(H) = 1.2Ueq(C, N). The pyrimidine
hydrogen atom H4 is shared by two N—H groups and thus has an occupancy factor
of 0.5.
Data collection: APEX2 (Bruker, 2004); cell refinement: SAINT (Bruker, 2004); data reduction: SAINT (Bruker, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).
(2,4-Dioxo-1,2,3,4-tetrahydropyrimidine-5-carboxylato-
κ2O4,
O5)(4-oxido-2-oxo-1,2-dihydropyrimidine-5-
carboxylato-
κ2O4,
O5)bis(1,10-phenanthroline-
κ2N,
N')yttrium(III) dihydrate
top
Crystal data top
| [Y(C5H2N2O4)(C5H3N2O4)(C12H8N2)2]·2H2O | F000 = 1616 |
| Mr = 794.53 | Dx = 1.637 Mg m−3 |
| Monoclinic, C2/c | Mo Kα radiation λ = 0.71073 Å |
| Hall symbol: -C 2yc | Cell parameters from 7855 reflections |
| a = 17.1740 (13) Å | θ = 2.3–27.9º |
| b = 14.4385 (11) Å | µ = 1.89 mm−1 |
| c = 13.2365 (10) Å | T = 295 (2) K |
| β = 100.8810 (10)º | Prism, colourless |
| V = 3223.2 (4) Å3 | 0.24 × 0.08 × 0.06 mm |
| Z = 4 | |
Data collection top
Bruker APEXII diffractometer | 3152 independent reflections |
| Radiation source: fine-focus sealed tube | 2986 reflections with I > 2σ(I) |
| Monochromator: graphite | Rint = 0.035 |
| T = 295(2) K | θmax = 26.0º |
| φ and ω scans | θmin = 1.9º |
Absorption correction: multi-scan (SADABS; Bruker, 1998) | h = −21→21 |
| Tmin = 0.660, Tmax = 0.895 | k = −17→17 |
| 12035 measured reflections | l = −16→16 |
Refinement top
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.046 | H-atom parameters constrained |
| wR(F2) = 0.096 | w = 1/[σ2(Fo2) + (0.0141P)2 + 9.88P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.21 | (Δ/σ)max < 0.001 |
| 3152 reflections | Δρmax = 0.41 e Å−3 |
| 240 parameters | Δρmin = −0.51 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
Crystal data top
| [Y(C5H2N2O4)(C5H3N2O4)(C12H8N2)2]·2H2O | V = 3223.2 (4) Å3 |
| Mr = 794.53 | Z = 4 |
| Monoclinic, C2/c | Mo Kα |
| a = 17.1740 (13) Å | µ = 1.89 mm−1 |
| b = 14.4385 (11) Å | T = 295 (2) K |
| c = 13.2365 (10) Å | 0.24 × 0.08 × 0.06 mm |
| β = 100.8810 (10)º | |
Data collection top
Bruker APEXII diffractometer | 3152 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 1998) | 2986 reflections with I > 2σ(I) |
| Tmin = 0.660, Tmax = 0.895 | Rint = 0.035 |
| 12035 measured reflections | |
Refinement top
| R[F2 > 2σ(F2)] = 0.046 | 240 parameters |
| wR(F2) = 0.096 | H-atom parameters constrained |
| S = 1.21 | Δρmax = 0.41 e Å−3 |
| 3152 reflections | Δρmin = −0.51 e Å−3 |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and
goodness of fit S are based on F2, conventional R-factors R are based
on F, with F set to zero for negative F2. The threshold expression of
F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is
not relevant to the choice of reflections for refinement. R-factors based
on F2 are statistically about twice as large as those based on F, and R-
factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top| | x | y | z | Uiso*/Ueq | Occ. (<1) |
| Y1 | 1.0000 | 0.88802 (3) | 0.2500 | 0.02339 (12) | |
| N1 | 0.90591 (16) | 0.75076 (19) | 0.2117 (2) | 0.0324 (6) | |
| N2 | 0.96510 (16) | 0.80446 (19) | 0.4073 (2) | 0.0304 (6) | |
| N3 | 0.83326 (16) | 1.02589 (19) | −0.0065 (2) | 0.0297 (6) | |
| H3 | 0.8379 | 0.9842 | −0.0514 | 0.036* | |
| N4 | 0.78240 (19) | 1.1684 (2) | 0.0310 (2) | 0.0387 (7) | |
| H4 | 0.7585 | 1.2199 | 0.0131 | 0.046* | 0.50 |
| O1 | 0.90470 (14) | 0.93356 (15) | 0.11247 (17) | 0.0329 (6) | |
| O2 | 0.93006 (14) | 0.99886 (16) | 0.31195 (17) | 0.0337 (6) | |
| O3 | 0.84729 (15) | 1.10907 (17) | 0.34049 (17) | 0.0371 (6) | |
| O4 | 0.76917 (16) | 1.11986 (18) | −0.13684 (19) | 0.0451 (7) | |
| C1 | 0.8770 (2) | 1.0594 (2) | 0.2805 (2) | 0.0272 (7) | |
| C2 | 0.84980 (19) | 1.0723 (2) | 0.1678 (2) | 0.0269 (7) | |
| C3 | 0.86584 (18) | 1.0066 (2) | 0.0941 (2) | 0.0248 (7) | |
| C4 | 0.7937 (2) | 1.1063 (2) | −0.0423 (3) | 0.0324 (7) | |
| C5 | 0.8085 (2) | 1.1498 (2) | 0.1311 (3) | 0.0358 (8) | |
| H5 | 0.7976 | 1.1928 | 0.1788 | 0.043* | |
| C6 | 0.9900 (2) | 0.8317 (3) | 0.5036 (3) | 0.0386 (8) | |
| H6 | 1.0089 | 0.8920 | 0.5148 | 0.046* | |
| C7 | 0.9896 (3) | 0.7758 (3) | 0.5890 (3) | 0.0512 (11) | |
| H7 | 1.0074 | 0.7982 | 0.6552 | 0.061* | |
| C8 | 0.9624 (3) | 0.6872 (3) | 0.5735 (3) | 0.0599 (12) | |
| H8 | 0.9626 | 0.6483 | 0.6296 | 0.072* | |
| C9 | 0.9342 (2) | 0.6545 (3) | 0.4735 (3) | 0.0463 (10) | |
| C10 | 0.9355 (2) | 0.7169 (2) | 0.3922 (3) | 0.0327 (8) | |
| C11 | 0.9042 (2) | 0.6886 (2) | 0.2883 (3) | 0.0325 (8) | |
| C12 | 0.8716 (2) | 0.5993 (2) | 0.2699 (3) | 0.0419 (9) | |
| C13 | 0.8735 (3) | 0.5372 (3) | 0.3546 (4) | 0.0607 (13) | |
| H13 | 0.8534 | 0.4776 | 0.3423 | 0.073* | |
| C14 | 0.9036 (3) | 0.5634 (3) | 0.4513 (4) | 0.0618 (13) | |
| H14 | 0.9045 | 0.5215 | 0.5048 | 0.074* | |
| C15 | 0.8370 (2) | 0.5768 (3) | 0.1686 (4) | 0.0510 (11) | |
| H15 | 0.8148 | 0.5185 | 0.1533 | 0.061* | |
| C16 | 0.8357 (2) | 0.6401 (3) | 0.0926 (3) | 0.0490 (10) | |
| H16 | 0.8119 | 0.6262 | 0.0252 | 0.059* | |
| C17 | 0.8707 (2) | 0.7264 (3) | 0.1173 (3) | 0.0397 (9) | |
| H17 | 0.8693 | 0.7693 | 0.0647 | 0.048* | |
| O5 | 0.6925 (3) | 0.1887 (2) | 0.6600 (3) | 0.0956 (14) | |
| H51 | 0.6793 | 0.2454 | 0.6644 | 0.143* | |
| H52 | 0.7082 | 0.1681 | 0.7208 | 0.143* | |
Atomic displacement parameters (Å2) top| | U11 | U22 | U33 | U12 | U13 | U23 |
| Y1 | 0.0287 (2) | 0.0187 (2) | 0.0207 (2) | 0.000 | −0.00062 (16) | 0.000 |
| N1 | 0.0322 (16) | 0.0288 (15) | 0.0352 (16) | −0.0037 (12) | 0.0040 (12) | −0.0035 (12) |
| N2 | 0.0318 (15) | 0.0294 (15) | 0.0297 (15) | −0.0002 (12) | 0.0051 (12) | 0.0008 (12) |
| N3 | 0.0389 (16) | 0.0276 (15) | 0.0204 (13) | 0.0051 (12) | 0.0001 (12) | −0.0021 (11) |
| N4 | 0.057 (2) | 0.0273 (15) | 0.0278 (15) | 0.0107 (14) | −0.0016 (14) | 0.0018 (12) |
| O1 | 0.0421 (14) | 0.0265 (12) | 0.0255 (12) | 0.0100 (10) | −0.0052 (10) | −0.0034 (9) |
| O2 | 0.0441 (14) | 0.0324 (13) | 0.0226 (12) | 0.0133 (11) | 0.0011 (10) | 0.0006 (10) |
| O3 | 0.0510 (15) | 0.0374 (14) | 0.0227 (12) | 0.0125 (12) | 0.0064 (11) | −0.0021 (10) |
| O4 | 0.0562 (17) | 0.0369 (15) | 0.0358 (14) | 0.0044 (13) | −0.0074 (12) | 0.0002 (12) |
| C1 | 0.0345 (18) | 0.0240 (16) | 0.0224 (16) | −0.0025 (14) | 0.0032 (13) | 0.0017 (13) |
| C2 | 0.0328 (17) | 0.0263 (16) | 0.0207 (16) | 0.0053 (14) | 0.0031 (13) | 0.0002 (13) |
| C3 | 0.0284 (16) | 0.0237 (16) | 0.0209 (15) | −0.0008 (13) | 0.0014 (13) | 0.0007 (12) |
| C4 | 0.0373 (19) | 0.0291 (18) | 0.0280 (17) | −0.0006 (15) | −0.0012 (14) | 0.0021 (14) |
| C5 | 0.050 (2) | 0.0292 (18) | 0.0263 (18) | 0.0094 (16) | 0.0031 (16) | −0.0026 (14) |
| C6 | 0.039 (2) | 0.042 (2) | 0.0339 (19) | −0.0026 (17) | 0.0042 (16) | −0.0029 (16) |
| C7 | 0.056 (3) | 0.070 (3) | 0.028 (2) | −0.010 (2) | 0.0082 (18) | 0.0061 (19) |
| C8 | 0.066 (3) | 0.069 (3) | 0.044 (2) | −0.008 (2) | 0.009 (2) | 0.024 (2) |
| C9 | 0.048 (2) | 0.043 (2) | 0.048 (2) | −0.0034 (19) | 0.0101 (19) | 0.0158 (19) |
| C10 | 0.0306 (18) | 0.0296 (18) | 0.0384 (19) | −0.0007 (14) | 0.0078 (15) | 0.0034 (15) |
| C11 | 0.0311 (18) | 0.0269 (17) | 0.0399 (19) | −0.0005 (14) | 0.0072 (15) | −0.0017 (15) |
| C12 | 0.042 (2) | 0.0279 (19) | 0.058 (2) | −0.0074 (16) | 0.0137 (19) | −0.0027 (17) |
| C13 | 0.074 (3) | 0.030 (2) | 0.080 (3) | −0.018 (2) | 0.017 (3) | 0.004 (2) |
| C14 | 0.076 (3) | 0.042 (3) | 0.068 (3) | −0.017 (2) | 0.016 (3) | 0.021 (2) |
| C15 | 0.051 (2) | 0.035 (2) | 0.069 (3) | −0.0161 (19) | 0.016 (2) | −0.018 (2) |
| C16 | 0.047 (2) | 0.050 (2) | 0.049 (2) | −0.0137 (19) | 0.0063 (19) | −0.022 (2) |
| C17 | 0.039 (2) | 0.039 (2) | 0.040 (2) | −0.0064 (17) | 0.0052 (16) | −0.0062 (16) |
| O5 | 0.145 (4) | 0.059 (2) | 0.067 (2) | 0.004 (2) | −0.017 (2) | −0.0089 (19) |
Geometric parameters (Å, °) top
| Y1—O2i | 2.247 (2) | C2—C3 | 1.423 (4) |
| Y1—O2 | 2.247 (2) | C5—H5 | 0.9300 |
| Y1—O1i | 2.302 (2) | C6—C7 | 1.391 (5) |
| Y1—O1 | 2.302 (2) | C6—H6 | 0.9300 |
| Y1—N1 | 2.547 (3) | C7—C8 | 1.362 (6) |
| Y1—N1i | 2.547 (3) | C7—H7 | 0.9300 |
| Y1—N2i | 2.573 (3) | C8—C9 | 1.403 (6) |
| Y1—N2 | 2.573 (3) | C8—H8 | 0.9300 |
| N1—C17 | 1.329 (4) | C9—C10 | 1.407 (5) |
| N1—C11 | 1.358 (4) | C9—C14 | 1.426 (6) |
| N2—C6 | 1.326 (4) | C10—C11 | 1.439 (5) |
| N2—C10 | 1.363 (4) | C11—C12 | 1.408 (5) |
| N3—C3 | 1.373 (4) | C12—C15 | 1.399 (6) |
| N3—C4 | 1.383 (4) | C12—C13 | 1.431 (6) |
| N3—H3 | 0.8600 | C13—C14 | 1.342 (6) |
| N4—C5 | 1.343 (4) | C13—H13 | 0.9300 |
| N4—C4 | 1.362 (4) | C14—H14 | 0.9300 |
| N4—H4 | 0.8600 | C15—C16 | 1.355 (6) |
| O1—C3 | 1.247 (4) | C15—H15 | 0.9300 |
| O2—C1 | 1.275 (4) | C16—C17 | 1.395 (5) |
| O3—C1 | 1.248 (4) | C16—H16 | 0.9300 |
| O4—C4 | 1.258 (4) | C17—H17 | 0.9300 |
| C1—C2 | 1.489 (4) | O5—H51 | 0.8533 |
| C2—C5 | 1.364 (4) | O5—H52 | 0.8518 |
| | | |
| O2i—Y1—O2 | 89.15 (13) | C3—C2—C1 | 122.6 (3) |
| O2i—Y1—O1i | 74.69 (8) | O1—C3—N3 | 117.7 (3) |
| O2—Y1—O1i | 81.79 (9) | O1—C3—C2 | 126.6 (3) |
| O2i—Y1—O1 | 81.79 (8) | N3—C3—C2 | 115.7 (3) |
| O2—Y1—O1 | 74.69 (8) | O4—C4—N4 | 122.7 (3) |
| O1i—Y1—O1 | 146.81 (11) | O4—C4—N3 | 121.5 (3) |
| O2i—Y1—N1 | 147.62 (8) | N4—C4—N3 | 115.8 (3) |
| O2—Y1—N1 | 105.31 (9) | N4—C5—C2 | 124.8 (3) |
| O1i—Y1—N1 | 135.17 (8) | N4—C5—H5 | 117.6 |
| O1—Y1—N1 | 74.65 (9) | C2—C5—H5 | 117.6 |
| O2i—Y1—N1i | 105.31 (9) | N2—C6—C7 | 124.0 (4) |
| O2—Y1—N1i | 147.62 (8) | N2—C6—H6 | 118.0 |
| O1i—Y1—N1i | 74.65 (9) | C7—C6—H6 | 118.0 |
| O1—Y1—N1i | 135.17 (8) | C8—C7—C6 | 118.5 (4) |
| N1—Y1—N1i | 77.82 (13) | C8—C7—H7 | 120.7 |
| O2i—Y1—N2i | 79.43 (8) | C6—C7—H7 | 120.7 |
| O2—Y1—N2i | 148.38 (8) | C7—C8—C9 | 120.4 (4) |
| O1i—Y1—N2i | 122.30 (9) | C7—C8—H8 | 119.8 |
| O1—Y1—N2i | 74.55 (8) | C9—C8—H8 | 119.8 |
| N1—Y1—N2i | 73.15 (9) | C8—C9—C10 | 117.0 (4) |
| N1i—Y1—N2i | 63.90 (9) | C8—C9—C14 | 123.6 (4) |
| O2i—Y1—N2 | 148.38 (8) | C10—C9—C14 | 119.4 (4) |
| O2—Y1—N2 | 79.43 (9) | N2—C10—C9 | 122.8 (3) |
| O1i—Y1—N2 | 74.55 (8) | N2—C10—C11 | 117.7 (3) |
| O1—Y1—N2 | 122.30 (9) | C9—C10—C11 | 119.5 (3) |
| N1—Y1—N2 | 63.90 (9) | N1—C11—C12 | 122.7 (3) |
| N1i—Y1—N2 | 73.15 (9) | N1—C11—C10 | 118.0 (3) |
| N2i—Y1—N2 | 124.07 (12) | C12—C11—C10 | 119.3 (3) |
| C17—N1—C11 | 117.1 (3) | C15—C12—C11 | 117.5 (4) |
| C17—N1—Y1 | 123.5 (2) | C15—C12—C13 | 123.2 (4) |
| C11—N1—Y1 | 117.9 (2) | C11—C12—C13 | 119.3 (4) |
| C6—N2—C10 | 117.4 (3) | C14—C13—C12 | 121.2 (4) |
| C6—N2—Y1 | 123.8 (2) | C14—C13—H13 | 119.4 |
| C10—N2—Y1 | 117.0 (2) | C12—C13—H13 | 119.4 |
| C3—N3—C4 | 125.9 (3) | C13—C14—C9 | 121.2 (4) |
| C3—N3—H3 | 117.0 | C13—C14—H14 | 119.4 |
| C4—N3—H3 | 117.0 | C9—C14—H14 | 119.4 |
| C5—N4—C4 | 120.3 (3) | C16—C15—C12 | 119.9 (4) |
| C5—N4—H4 | 119.9 | C16—C15—H15 | 120.0 |
| C4—N4—H4 | 119.9 | C12—C15—H15 | 120.0 |
| C3—O1—Y1 | 132.1 (2) | C15—C16—C17 | 118.8 (4) |
| C1—O2—Y1 | 140.2 (2) | C15—C16—H16 | 120.6 |
| O3—C1—O2 | 122.6 (3) | C17—C16—H16 | 120.6 |
| O3—C1—C2 | 118.5 (3) | N1—C17—C16 | 123.9 (4) |
| O2—C1—C2 | 118.8 (3) | N1—C17—H17 | 118.1 |
| C5—C2—C3 | 117.2 (3) | C16—C17—H17 | 118.1 |
| C5—C2—C1 | 120.2 (3) | H51—O5—H52 | 108.2 |
| | | |
| O2i—Y1—N1—C17 | −8.9 (4) | C4—N3—C3—O1 | −174.8 (3) |
| O2—Y1—N1—C17 | 104.9 (3) | C4—N3—C3—C2 | 6.6 (5) |
| O1i—Y1—N1—C17 | −161.4 (3) | C5—C2—C3—O1 | 177.5 (3) |
| O1—Y1—N1—C17 | 35.9 (3) | C1—C2—C3—O1 | −1.8 (5) |
| N1i—Y1—N1—C17 | −108.3 (3) | C5—C2—C3—N3 | −4.0 (5) |
| N2i—Y1—N1—C17 | −42.2 (3) | C1—C2—C3—N3 | 176.7 (3) |
| N2—Y1—N1—C17 | 174.6 (3) | C5—N4—C4—O4 | 178.8 (4) |
| O2i—Y1—N1—C11 | 157.1 (2) | C5—N4—C4—N3 | −0.5 (5) |
| O2—Y1—N1—C11 | −89.1 (2) | C3—N3—C4—O4 | 176.4 (3) |
| O1i—Y1—N1—C11 | 4.6 (3) | C3—N3—C4—N4 | −4.3 (5) |
| O1—Y1—N1—C11 | −158.1 (3) | C4—N4—C5—C2 | 2.7 (6) |
| N1i—Y1—N1—C11 | 57.7 (2) | C3—C2—C5—N4 | −0.3 (6) |
| N2i—Y1—N1—C11 | 123.8 (3) | C1—C2—C5—N4 | 179.0 (3) |
| N2—Y1—N1—C11 | −19.3 (2) | C10—N2—C6—C7 | 1.8 (5) |
| O2i—Y1—N2—C6 | 7.0 (4) | Y1—N2—C6—C7 | −162.4 (3) |
| O2—Y1—N2—C6 | −63.6 (3) | N2—C6—C7—C8 | 0.4 (6) |
| O1i—Y1—N2—C6 | 20.7 (3) | C6—C7—C8—C9 | −1.3 (7) |
| O1—Y1—N2—C6 | −127.8 (3) | C7—C8—C9—C10 | 0.0 (7) |
| N1—Y1—N2—C6 | −176.6 (3) | C7—C8—C9—C14 | −178.8 (5) |
| N1i—Y1—N2—C6 | 99.0 (3) | C6—N2—C10—C9 | −3.2 (5) |
| N2i—Y1—N2—C6 | 139.5 (3) | Y1—N2—C10—C9 | 162.2 (3) |
| O2i—Y1—N2—C10 | −157.3 (2) | C6—N2—C10—C11 | 176.5 (3) |
| O2—Y1—N2—C10 | 132.1 (2) | Y1—N2—C10—C11 | −18.1 (4) |
| O1i—Y1—N2—C10 | −143.6 (2) | C8—C9—C10—N2 | 2.3 (6) |
| O1—Y1—N2—C10 | 67.9 (2) | C14—C9—C10—N2 | −178.8 (4) |
| N1—Y1—N2—C10 | 19.1 (2) | C8—C9—C10—C11 | −177.4 (4) |
| N1i—Y1—N2—C10 | −65.3 (2) | C14—C9—C10—C11 | 1.5 (6) |
| N2i—Y1—N2—C10 | −24.8 (2) | C17—N1—C11—C12 | 4.1 (5) |
| O2i—Y1—O1—C3 | −68.1 (3) | Y1—N1—C11—C12 | −162.8 (3) |
| O2—Y1—O1—C3 | 23.3 (3) | C17—N1—C11—C10 | −174.4 (3) |
| O1i—Y1—O1—C3 | −23.2 (3) | Y1—N1—C11—C10 | 18.7 (4) |
| N1—Y1—O1—C3 | 134.3 (3) | N2—C10—C11—N1 | −0.2 (5) |
| N1i—Y1—O1—C3 | −171.6 (3) | C9—C10—C11—N1 | 179.6 (3) |
| N2i—Y1—O1—C3 | −149.3 (3) | N2—C10—C11—C12 | −178.7 (3) |
| N2—Y1—O1—C3 | 89.8 (3) | C9—C10—C11—C12 | 1.1 (5) |
| O2i—Y1—O2—C1 | 72.0 (3) | N1—C11—C12—C15 | −2.7 (6) |
| O1i—Y1—O2—C1 | 146.7 (4) | C10—C11—C12—C15 | 175.7 (3) |
| O1—Y1—O2—C1 | −9.7 (3) | N1—C11—C12—C13 | 178.8 (4) |
| N1—Y1—O2—C1 | −78.6 (3) | C10—C11—C12—C13 | −2.8 (6) |
| N1i—Y1—O2—C1 | −170.0 (3) | C15—C12—C13—C14 | −176.4 (5) |
| N2i—Y1—O2—C1 | 4.0 (4) | C11—C12—C13—C14 | 2.0 (7) |
| N2—Y1—O2—C1 | −137.6 (4) | C12—C13—C14—C9 | 0.6 (8) |
| Y1—O2—C1—O3 | 176.0 (2) | C8—C9—C14—C13 | 176.5 (5) |
| Y1—O2—C1—C2 | −4.6 (5) | C10—C9—C14—C13 | −2.3 (7) |
| O3—C1—C2—C5 | 15.4 (5) | C11—C12—C15—C16 | −0.1 (6) |
| O2—C1—C2—C5 | −164.0 (3) | C13—C12—C15—C16 | 178.4 (4) |
| O3—C1—C2—C3 | −165.3 (3) | C12—C15—C16—C17 | 1.3 (6) |
| O2—C1—C2—C3 | 15.2 (5) | C11—N1—C17—C16 | −2.8 (5) |
| Y1—O1—C3—N3 | 158.7 (2) | Y1—N1—C17—C16 | 163.3 (3) |
| Y1—O1—C3—C2 | −22.8 (5) | C15—C16—C17—N1 | 0.2 (6) |
| Symmetry codes: (i) −x+2, y, −z+1/2. |
Hydrogen-bond geometry (Å, °) top
| D—H···A | D—H | H···A | D···A | D—H···A |
| N3—H3···O3ii | 0.86 | 1.99 | 2.853 (4) | 178 |
| N3—H3···O2ii | 0.86 | 2.63 | 3.189 (4) | 124 |
| N4—H4···N4iii | 0.86 | 1.81 | 2.667 (6) | 174 |
| O5—H51···O3iv | 0.85 | 2.15 | 2.998 (4) | 173 |
| O5—H52···O4v | 0.85 | 2.10 | 2.935 (4) | 169 |
| Symmetry codes: (ii) x, −y+2, z−1/2; (iii) −x+3/2, −y+5/2, −z; (iv) −x+3/2, −y+3/2, −z+1; (v) x, y−1, z+1. |
Table 1
Selected geometric parameters (Å, °) top| Y1—O2 | 2.247 (2) | Y1—N1 | 2.547 (3) |
| Y1—O1 | 2.302 (2) | Y1—N2 | 2.573 (3) |
| | | |
| O2i—Y1—O2 | 89.15 (13) | N1—Y1—N1i | 77.82 (13) |
| O2—Y1—O1i | 81.79 (9) | O2—Y1—N2i | 148.38 (8) |
| O2—Y1—O1 | 74.69 (8) | O1—Y1—N2i | 74.55 (8) |
| O1i—Y1—O1 | 146.81 (11) | N1—Y1—N2i | 73.15 (9) |
| O2i—Y1—N1 | 147.62 (8) | O2—Y1—N2 | 79.43 (9) |
| O2—Y1—N1 | 105.31 (9) | O1—Y1—N2 | 122.30 (9) |
| O1i—Y1—N1 | 135.17 (8) | N1—Y1—N2 | 63.90 (9) |
| O1—Y1—N1 | 74.65 (9) | N2i—Y1—N2 | 124.07 (12) |
| Symmetry codes: (i) −x+2, y, −z+1/2. |
Table 2
Hydrogen-bond geometry (Å, °) top
| D—H···A | D—H | H···A | D···A | D—H···A |
| N3—H3···O3ii | 0.86 | 1.99 | 2.853 (4) | 178 |
| N3—H3···O2ii | 0.86 | 2.63 | 3.189 (4) | 124 |
| N4—H4···N4iii | 0.86 | 1.81 | 2.667 (6) | 174 |
| O5—H51···O3iv | 0.85 | 2.15 | 2.998 (4) | 173 |
| O5—H52···O4v | 0.85 | 2.10 | 2.935 (4) | 169 |
| Symmetry codes: (ii) x, −y+2, z−1/2; (iii) −x+3/2, −y+5/2, −z; (iv) −x+3/2, −y+3/2, −z+1; (v) x, y−1, z+1. |
The authors thank the Science Foundation of Guangxi Province, China (Gui ke
qing 0542021) and the Scientific Research Foundation for Returned Overseas
Chinese Scholars, State Education Ministry, for financial support.
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Xing, H.-H., Chen, Z.-L. & Ng, S. W. (2008). Acta Cryst. E64, m418.
2,4-Dioxo-1,2,3,4-tetrahydropyrimidine-5-carboxylic acid has attracted much attention because of its potential biological activity and pharmaceutical properties, such as anticancer, antibacterial and antihypertensive properties (Tobiki et al., 1980; Castan et al., 1990). Here we report the crystal structure of YIII complex with 2,4-dioxo-1,2,3,4-tetrahydropyrimidine-5-carboxylic acid and 1,10-phenenthroline as ligands. The title complex turned out to be isostructural with the analogues Eu, Tb, Yb (Sun & Jin, 2004) and Er (Xing et al., 2008) complexes; see Sun & Jin (2004) for their detailed description.