supplementary materials


Acta Cryst. (2008). E64, o2085    [ doi:10.1107/S1600536808030584 ]

5-Methyl-1-(3-nitrobenzyl)-1H-1,2,3-triazole-4-carboxylic acid monohydrate

J. Xiao, W. X. Wang and H. Zhao

Abstract top

The title compound, C11H10N4O4·H2O, was synthesized from 1-azidomethyl-3-nitrobenzene and ethyl acetylacetate. Single-crystal X-ray analysis reveals that the dihedral angle between the triazole and benzene ring planes is 84.80 (2)°. The packing of the molecules is stabilized by strong O-H...O hydrogen bonds involving the solvent water molecules as donors and acceptors. The resulting layers are arranged into a three-dimensional framework via weak C-H...O interactions.

Comment top

It is well known that many triazole-related molecules have received much attention due to their biological activities (Olesen et al., 2003; Tian et al., 2005). We report herein the crystal structure of the title compound, (I, Fig. 1). The bond lengths and angles have normal values. The dihedral angle between the triazole and phenyl planes is 84.80 (2)°. The packing of the molecules is stabilized by strong hydrogen bonds (Table 1) between the triazole molecules and lattice water molecules. Meanwhile, the 0D discrete molecules are arranged into a three-dimensional framework via hydrogen bond interactions and weak contacts (Fig. 2).

Related literature top

For the synthesis of the title compound, see: EI Khadem et al. (1968). For related literature about biological activity of triazole-based compounds, see: Olesen et al. (2003); Tian et al. (2005).

Experimental top

The title compound was prepared from 1-(azidomethyl)-3-nitrobenzene, according to the reported method (EI Khadem et al., 1968), in 70% yield. Colourless prisms of (I) were obtained by slow evaporation of a 95% ethanol/water solution at room temperature.

Refinement top

All H atoms were detected in a difference map. Nevertheless, all C-bonded H atoms were placed in calculated positions, and constrained in a riding motion approximation with fixed bond lengths and Uiso parameters: Caryl—H = 0.93 Å, with Uiso(H) = 1.2Ueq(C); Cmethyl—H = 0.96 Å, with Uiso(H) = 1.5Ueq(C); Cmethylene—H = 0.97 Å, with Uiso(H) = 1.2Ueq(C); O—H bonds for the water molecule were constrained to 0.94 Å and 0.85 Å, with Uiso(H) = 1.5Ueq(O1W). Finally, the hydroxyl H atom (H2) was refined freely.

Computing details top

Data collection: CrystalClear (Rigaku, 2005); cell refinement: CrystalClear (Rigaku, 2005); data reduction: CrystalClear (Rigaku, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).

Figures top
[Figure 1] Fig. 1. The molecular structure of (I), showing the atomic numbering scheme. Displacement ellipsoids are drawn at the 50% probability level.
[Figure 2] Fig. 2. Packing diagram of the title compound, showing the crystal structure along the b axis.
5-Methyl-1-(3-nitrobenzyl)-1H-1,2,3-triazole-4-carboxylic acid monohydrate top
Crystal data top
C11H10N4O4·H2OZ = 2
Mr = 280.25F(000) = 292
Triclinic, P1Dx = 1.442 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.1649 (14) ÅCell parameters from 5670 reflections
b = 8.2064 (16) Åθ = 3.1–27.5°
c = 11.281 (2) ŵ = 0.12 mm1
α = 84.88 (3)°T = 293 K
β = 77.70 (2)°Prism, colourless
γ = 89.38 (3)°0.20 × 0.18 × 0.15 mm
V = 645.5 (2) Å3
Data collection top
Rigaku SCXmini
diffractometer
2959 independent reflections
Radiation source: fine-focus sealed tube1824 reflections with I > 2σ(I)
graphiteRint = 0.040
Detector resolution: 13.6612 pixels mm-1θmax = 27.5°, θmin = 3.1°
ω scansh = 99
Absorption correction: multi-scan
(CrystalClear; Rigaku, 2005)
k = 1010
Tmin = 0.965, Tmax = 0.977l = 1414
6749 measured reflections
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.064Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.181H atoms treated by a mixture of independent and constrained refinement
S = 1.02 w = 1/[σ2(Fo2) + (0.0847P)2 + 0.0594P]
where P = (Fo2 + 2Fc2)/3
2959 reflections(Δ/σ)max < 0.001
186 parametersΔρmax = 0.27 e Å3
3 restraintsΔρmin = 0.21 e Å3
0 constraints
Crystal data top
C11H10N4O4·H2Oγ = 89.38 (3)°
Mr = 280.25V = 645.5 (2) Å3
Triclinic, P1Z = 2
a = 7.1649 (14) ÅMo Kα radiation
b = 8.2064 (16) ŵ = 0.12 mm1
c = 11.281 (2) ÅT = 293 K
α = 84.88 (3)°0.20 × 0.18 × 0.15 mm
β = 77.70 (2)°
Data collection top
Rigaku SCXmini
diffractometer
2959 independent reflections
Absorption correction: multi-scan
(CrystalClear; Rigaku, 2005)
1824 reflections with I > 2σ(I)
Tmin = 0.965, Tmax = 0.977Rint = 0.040
6749 measured reflectionsθmax = 27.5°
Refinement top
R[F2 > 2σ(F2)] = 0.064H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.181Δρmax = 0.27 e Å3
S = 1.02Δρmin = 0.21 e Å3
2959 reflectionsAbsolute structure: ?
186 parametersFlack parameter: ?
3 restraintsRogers parameter: ?
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
C10.7354 (3)0.2576 (3)0.1023 (2)0.0489 (6)
C20.8477 (3)0.1276 (3)0.13603 (19)0.0445 (5)
C30.7947 (3)0.0281 (3)0.16613 (19)0.0453 (5)
C40.6141 (4)0.1200 (3)0.1754 (3)0.0662 (7)
H4A0.54760.11490.25910.099*
H4B0.53570.07250.12810.099*
H4C0.64190.23210.14510.099*
C50.9906 (4)0.2546 (3)0.2222 (2)0.0552 (6)
H5A0.95270.33520.16370.066*
H5B1.12660.26830.21660.066*
C60.8858 (3)0.2880 (3)0.3486 (2)0.0481 (6)
C70.8471 (3)0.4501 (3)0.3709 (2)0.0490 (6)
H70.87870.53340.30830.059*
C80.7616 (3)0.4858 (3)0.4866 (2)0.0525 (6)
C90.7117 (4)0.3678 (4)0.5813 (2)0.0673 (7)
H90.65490.39520.65890.081*
C100.7481 (5)0.2061 (4)0.5582 (2)0.0755 (8)
H100.71390.12330.62090.091*
C110.8352 (4)0.1670 (3)0.4426 (2)0.0634 (7)
H110.85970.05820.42820.076*
N11.0337 (3)0.1508 (2)0.14233 (18)0.0543 (5)
N21.0999 (3)0.0190 (2)0.17513 (19)0.0584 (6)
N30.9557 (3)0.0908 (2)0.18882 (17)0.0487 (5)
N40.7247 (3)0.6596 (3)0.5081 (3)0.0710 (7)
O10.8110 (3)0.3876 (2)0.07308 (19)0.0758 (6)
O20.5593 (3)0.2220 (3)0.1079 (2)0.0867 (7)
H20.506 (8)0.295 (6)0.091 (5)0.18 (2)*
O30.7575 (4)0.7611 (3)0.4204 (3)0.1067 (9)
O40.6635 (3)0.6915 (3)0.6118 (2)0.1040 (8)
O1W0.2862 (2)0.5822 (2)0.09151 (18)0.0707 (6)
H1A0.26670.54120.02870.106*
H1B0.18130.65100.11110.106*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
C10.0516 (14)0.0470 (13)0.0509 (14)0.0009 (11)0.0142 (10)0.0120 (10)
C20.0458 (13)0.0474 (12)0.0410 (12)0.0008 (10)0.0070 (9)0.0130 (9)
C30.0468 (13)0.0465 (12)0.0426 (12)0.0009 (10)0.0066 (9)0.0113 (9)
C40.0578 (16)0.0592 (16)0.085 (2)0.0136 (13)0.0185 (13)0.0156 (14)
C50.0648 (16)0.0449 (13)0.0547 (14)0.0102 (11)0.0053 (11)0.0150 (11)
C60.0523 (14)0.0444 (13)0.0492 (13)0.0073 (10)0.0112 (10)0.0122 (10)
C70.0528 (14)0.0455 (13)0.0500 (13)0.0056 (11)0.0120 (10)0.0087 (10)
C80.0467 (13)0.0567 (14)0.0573 (15)0.0022 (11)0.0113 (11)0.0218 (12)
C90.0653 (17)0.086 (2)0.0511 (15)0.0053 (15)0.0088 (12)0.0182 (14)
C100.093 (2)0.077 (2)0.0520 (17)0.0084 (17)0.0088 (14)0.0071 (14)
C110.0809 (19)0.0481 (14)0.0610 (17)0.0022 (13)0.0148 (13)0.0049 (12)
N10.0478 (12)0.0561 (12)0.0629 (13)0.0029 (9)0.0125 (9)0.0257 (10)
N20.0509 (12)0.0593 (13)0.0689 (14)0.0023 (10)0.0136 (10)0.0255 (11)
N30.0495 (11)0.0448 (11)0.0521 (11)0.0024 (9)0.0068 (8)0.0163 (9)
N40.0608 (14)0.0758 (17)0.0824 (18)0.0047 (12)0.0141 (12)0.0429 (15)
O10.0991 (15)0.0526 (11)0.0874 (14)0.0051 (10)0.0357 (11)0.0311 (10)
O20.0653 (14)0.0731 (14)0.132 (2)0.0111 (11)0.0395 (13)0.0188 (13)
O30.144 (2)0.0529 (13)0.115 (2)0.0030 (14)0.0029 (17)0.0215 (13)
O40.1111 (19)0.1131 (19)0.0943 (17)0.0254 (15)0.0156 (14)0.0625 (15)
O1W0.0632 (12)0.0561 (11)0.0935 (14)0.0015 (9)0.0099 (10)0.0259 (10)
Geometric parameters (Å, °) top
C1—O11.230 (3)C7—C81.374 (3)
C1—O21.282 (3)C7—H70.9300
C1—C21.467 (3)C8—C91.366 (4)
C2—N11.360 (3)C8—N41.479 (3)
C2—C31.380 (3)C9—C101.386 (4)
C3—N31.350 (3)C9—H90.9300
C3—C41.479 (3)C10—C111.385 (4)
C4—H4A0.9600C10—H100.9300
C4—H4B0.9600C11—H110.9300
C4—H4C0.9600N1—N21.300 (3)
C5—N31.466 (3)N2—N31.356 (3)
C5—C61.510 (3)N4—O41.210 (3)
C5—H5A0.9700N4—O31.219 (3)
C5—H5B0.9700O2—H20.77 (5)
C6—C111.377 (3)O1W—H1B0.9349
C6—C71.391 (3)O1W—H1A0.8483
O1—C1—O2125.6 (2)C8—C7—H7120.4
O1—C1—C2120.3 (2)C6—C7—H7120.4
O2—C1—C2114.1 (2)C9—C8—C7122.6 (2)
N1—C2—C3109.06 (19)C9—C8—N4119.4 (2)
N1—C2—C1121.1 (2)C7—C8—N4118.0 (2)
C3—C2—C1129.8 (2)C8—C9—C10118.1 (2)
N3—C3—C2103.26 (19)C8—C9—H9121.0
N3—C3—C4123.4 (2)C10—C9—H9121.0
C2—C3—C4133.4 (2)C11—C10—C9120.4 (2)
C3—C4—H4A109.5C11—C10—H10119.8
C3—C4—H4B109.5C9—C10—H10119.8
H4A—C4—H4B109.5C6—C11—C10120.6 (2)
C3—C4—H4C109.5C6—C11—H11119.7
H4A—C4—H4C109.5C10—C11—H11119.7
H4B—C4—H4C109.5N2—N1—C2109.17 (19)
N3—C5—C6114.05 (19)N1—N2—N3106.90 (18)
N3—C5—H5A108.7C3—N3—N2111.60 (18)
C6—C5—H5A108.7C3—N3—C5129.1 (2)
N3—C5—H5B108.7N2—N3—C5119.26 (18)
C6—C5—H5B108.7O4—N4—O3124.3 (3)
H5A—C5—H5B107.6O4—N4—C8117.7 (3)
C11—C6—C7119.2 (2)O3—N4—C8118.0 (2)
C11—C6—C5123.2 (2)C1—O2—H2110 (4)
C7—C6—C5117.5 (2)H1B—O1W—H1A102.8
C8—C7—C6119.1 (2)
Hydrogen-bond geometry (Å, °) top
D—H···AD—HH···AD···AD—H···A
C4—H4A···O4i0.962.523.267 (3)135
O1W—H1A···O1ii0.851.942.755 (3)161
O1W—H1B···N1iii0.931.952.846 (3)160
C11—H11···O3iv0.932.573.423 (4)153
O2—H2···O1Wiv0.77 (5)1.88 (5)2.592 (3)153 (6)
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) −x+1, −y, −z; (iii) x−1, y+1, z; (iv) x, y−1, z.
Table 1
Hydrogen-bond geometry (Å, °)
top
D—H···AD—HH···AD···AD—H···A
C4—H4A···O4i0.962.523.267 (3)135
O1W—H1A···O1ii0.851.942.755 (3)161
O1W—H1B···N1iii0.931.952.846 (3)160
C11—H11···O3iv0.932.573.423 (4)153
O2—H2···O1Wiv0.77 (5)1.88 (5)2.592 (3)153 (6)
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) −x+1, −y, −z; (iii) x−1, y+1, z; (iv) x, y−1, z.
Acknowledgements top

This work was supported by a start-up grant from Southeast University to HZ.

references
References top

EI Khadem, H., Mansour, H. A. R. & Meshriki, M. H. (1968). J. Chem. Soc. C, pp. 1329–1331. EI or El Khadem?

Olesen, P. H., Sørensen, A. R., Urso, B., Kurtzhals, P., Bowler, A. N., Ehrbar, U. & Hansen, B. F. (2003). J. Med. Chem. 46, 3333–3341.

Rigaku (2005). CrystalClear. Rigaku Corporation, Tokyo, Japan.

Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122.

Tian, L., Sun, Y., Li, H., Zheng, X., Cheng, Y., Liu, X. & Qian, B. (2005). J. Inorg. Biochem. 99, 1646–1652.