supplementary materials


Acta Cryst. (2009). E65, o2179    [ doi:10.1107/S160053680903205X ]

2,4-Disulfanyl-6-[(E)-(2-sulfanylbenzyl)iminomethyl]phenol

Y.-M. Cui, X.-B. Dai, L. Lei and Q.-F. Zeng

Abstract top

In the title compound, C14H13NOS3, the dihedral angle between the benzene rings is 73.26 (5)° and an intramolecular O-H...N hydrogen bond occurs.

Comment top

There has been much research interest in Schiff base compounds due to their biological activities (Shi et al., 2007). In this work, we report here the crystal structure of the title compound, (I). In (I), all bond lengths are within normal ranges (Allen et al., 1987) (Fig. 1). There ais an intramolecular O—H···N hydrogen bond (Table 1) in (I). The dihedral angle between the two benzene rings is 73.26 (0.05) °.

Related literature top

For background, see: Shi et al. (2007). For reference structural data, see: Allen et al. (1987);

Experimental top

A mixture of 2-hydroxy-3,5-disulfanylbenzaldehyde (186 mg, 1 mmol) and 2-(aminomethyl)benzenethiol (139 mg, 1 mmol) in methanol (10 ml) was stirred for 2 h. After keeping the filtrate in air for 6 d, yellow blocks of (I) were formed.

Refinement top

All H atoms were positioned geometrically (C—H = 0.93–0.97 Å, S—H = 1.20Å) and refined as riding with Uiso(H) = 1.2Ueq(carrier) or 1.5Ueq(methyl C).

Computing details top

Data collection: CAD-4 Software (Enraf–Nonius, 1989); cell refinement: CAD-4 Software (Enraf–Nonius, 1989); data reduction: XCAD4 (Harms & Wocadlo, 1995); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).

Figures top
[Figure 1] Fig. 1. The molecular structure of (I) showing 30% probability displacement ellipsoids.
2,4-Disulfanyl-6-[(E)-(2-sulfanylbenzyl)iminomethyl]phenol top
Crystal data top
C14H13NOS3F(000) = 640
Mr = 307.43Dx = 1.473 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 25 reflections
a = 11.9763 (13) Åθ = 9–12°
b = 8.2333 (13) ŵ = 0.52 mm1
c = 14.2213 (13) ÅT = 296 K
β = 98.723 (3)°Block, yellow
V = 1386.1 (3) Å30.28 × 0.25 × 0.25 mm
Z = 4
Data collection top
Enraf–Nonius CAD-4
diffractometer
2443 independent reflections
Radiation source: fine-focus sealed tube1929 reflections with I > 2σ(I)
graphiteRint = 0.025
ω/2θ scansθmax = 25.0°, θmin = 1.7°
Absorption correction: ψ scan
(North et al., 1968)
h = 1410
Tmin = 0.867, Tmax = 0.880k = 99
7137 measured reflectionsl = 1616
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.140H-atom parameters constrained
S = 1.06 w = 1/[σ2(Fo2) + (0.0746P)2 + 0.5508P]
where P = (Fo2 + 2Fc2)/3
2443 reflections(Δ/σ)max = 0.002
176 parametersΔρmax = 0.28 e Å3
0 restraintsΔρmin = 0.39 e Å3
Crystal data top
C14H13NOS3V = 1386.1 (3) Å3
Mr = 307.43Z = 4
Monoclinic, P21/cMo Kα radiation
a = 11.9763 (13) ŵ = 0.52 mm1
b = 8.2333 (13) ÅT = 296 K
c = 14.2213 (13) Å0.28 × 0.25 × 0.25 mm
β = 98.723 (3)°
Data collection top
Enraf–Nonius CAD-4
diffractometer
1929 reflections with I > 2σ(I)
Absorption correction: ψ scan
(North et al., 1968)
Rint = 0.025
Tmin = 0.867, Tmax = 0.880θmax = 25.0°
7137 measured reflectionsStandard reflections: 0
2443 independent reflections
Refinement top
R[F2 > 2σ(F2)] = 0.047H-atom parameters constrained
wR(F2) = 0.140Δρmax = 0.28 e Å3
S = 1.06Δρmin = 0.39 e Å3
2443 reflectionsAbsolute structure: ?
176 parametersFlack parameter: ?
0 restraintsRogers parameter: ?
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
C20.3001 (2)0.0386 (3)0.0207 (2)0.0502 (6)
H20.24150.03100.01180.060*
C30.3723 (2)0.0988 (3)0.05602 (18)0.0468 (6)
C40.46151 (19)0.2023 (3)0.04542 (18)0.0441 (6)
C50.4777 (2)0.2435 (3)0.04744 (18)0.0448 (6)
C60.4044 (2)0.1839 (3)0.1250 (2)0.0532 (7)
H60.41480.21180.18640.064*
C70.3166 (2)0.0837 (3)0.1110 (2)0.0538 (7)
C80.9011 (2)0.3750 (3)0.1048 (2)0.0551 (7)
C90.8496 (2)0.3907 (3)0.0113 (2)0.0478 (6)
C100.7427 (2)0.4868 (3)0.0169 (3)0.0605 (8)
H10A0.74760.58900.01740.073*
H10B0.73330.51060.08440.073*
C110.8989 (2)0.3091 (3)0.0574 (2)0.0594 (7)
H110.86600.31510.12090.071*
C120.9966 (3)0.2189 (4)0.0324 (3)0.0718 (9)
H121.02970.16680.07920.086*
C131.0442 (3)0.2064 (4)0.0608 (3)0.0726 (9)
H131.10920.14450.07720.087*
C140.9971 (3)0.2840 (4)0.1300 (2)0.0690 (8)
H141.02970.27530.19340.083*
C150.5736 (2)0.3436 (3)0.0638 (2)0.0523 (7)
H150.58210.37100.12570.063*
N10.64557 (17)0.3939 (3)0.00480 (18)0.0541 (6)
O10.52860 (16)0.2588 (2)0.12252 (13)0.0597 (5)
H10.58200.30780.10600.090*
S10.35256 (7)0.04078 (11)0.16895 (5)0.0677 (3)
H1A0.44080.00370.21280.102*
S20.22437 (8)0.01029 (13)0.20692 (7)0.0860 (4)
H2A0.27340.08230.25150.129*
S30.84366 (10)0.47293 (14)0.19417 (7)0.0939 (4)
H3A0.80050.59770.16400.141*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
C20.0407 (14)0.0441 (14)0.0657 (18)0.0040 (11)0.0080 (12)0.0050 (12)
C30.0450 (14)0.0445 (14)0.0537 (15)0.0098 (11)0.0161 (11)0.0037 (11)
C40.0379 (13)0.0410 (13)0.0531 (15)0.0074 (10)0.0060 (11)0.0070 (11)
C50.0394 (13)0.0392 (13)0.0555 (15)0.0099 (10)0.0059 (11)0.0044 (11)
C60.0543 (16)0.0523 (15)0.0514 (15)0.0073 (12)0.0029 (12)0.0093 (12)
C70.0475 (15)0.0527 (15)0.0575 (17)0.0041 (12)0.0037 (12)0.0010 (13)
C80.0483 (15)0.0544 (16)0.0643 (18)0.0054 (13)0.0144 (13)0.0064 (13)
C90.0399 (13)0.0369 (13)0.0683 (17)0.0032 (10)0.0136 (12)0.0039 (11)
C100.0440 (15)0.0444 (15)0.095 (2)0.0030 (11)0.0151 (14)0.0117 (14)
C110.0616 (17)0.0542 (16)0.0662 (18)0.0002 (13)0.0223 (14)0.0053 (13)
C120.072 (2)0.0588 (18)0.094 (2)0.0109 (15)0.0409 (19)0.0026 (17)
C130.0478 (17)0.067 (2)0.105 (3)0.0124 (15)0.0171 (17)0.0114 (19)
C140.0527 (17)0.076 (2)0.075 (2)0.0016 (15)0.0010 (15)0.0072 (17)
C150.0477 (15)0.0453 (14)0.0651 (17)0.0099 (12)0.0121 (13)0.0103 (12)
N10.0395 (12)0.0460 (12)0.0771 (16)0.0029 (9)0.0100 (11)0.0029 (11)
O10.0542 (11)0.0678 (13)0.0566 (11)0.0068 (9)0.0063 (9)0.0133 (9)
S10.0733 (5)0.0826 (6)0.0530 (5)0.0086 (4)0.0280 (4)0.0057 (4)
S20.0784 (6)0.1025 (7)0.0678 (6)0.0198 (5)0.0192 (4)0.0078 (5)
S30.1002 (8)0.1088 (8)0.0779 (6)0.0057 (6)0.0300 (5)0.0335 (5)
Geometric parameters (Å, °) top
C2—C31.377 (4)C10—N11.464 (3)
C2—C71.380 (4)C10—H10A0.9700
C2—H20.9300C10—H10B0.9700
C3—C41.392 (4)C11—C121.386 (4)
C3—S11.726 (3)C11—H110.9300
C4—O11.341 (3)C12—C131.364 (5)
C4—C51.405 (4)C12—H120.9300
C5—C61.391 (4)C13—C141.365 (5)
C5—C151.461 (4)C13—H130.9300
C6—C71.374 (4)C14—H140.9300
C6—H60.9300C15—N11.269 (3)
C7—S21.729 (3)C15—H150.9300
C8—C141.374 (4)O1—H10.8200
C8—C91.384 (4)S1—H1A1.2000
C8—S31.733 (3)S2—H2A1.2000
C9—C111.390 (4)S3—H3A1.2000
C9—C101.507 (4)
C3—C2—C7118.7 (2)N1—C10—H10A109.7
C3—C2—H2120.7C9—C10—H10A109.7
C7—C2—H2120.7N1—C10—H10B109.7
C2—C3—C4122.3 (2)C9—C10—H10B109.7
C2—C3—S1118.6 (2)H10A—C10—H10B108.2
C4—C3—S1119.1 (2)C12—C11—C9120.7 (3)
O1—C4—C3119.9 (2)C12—C11—H11119.7
O1—C4—C5122.3 (2)C9—C11—H11119.7
C3—C4—C5117.9 (2)C13—C12—C11120.1 (3)
C6—C5—C4119.9 (2)C13—C12—H12119.9
C6—C5—C15119.4 (2)C11—C12—H12119.9
C4—C5—C15120.7 (2)C12—C13—C14120.5 (3)
C7—C6—C5120.2 (3)C12—C13—H13119.7
C7—C6—H6119.9C14—C13—H13119.7
C5—C6—H6119.9C13—C14—C8119.3 (3)
C6—C7—C2121.1 (2)C13—C14—H14120.4
C6—C7—S2120.5 (2)C8—C14—H14120.4
C2—C7—S2118.4 (2)N1—C15—C5121.4 (3)
C14—C8—C9122.3 (3)N1—C15—H15119.3
C14—C8—S3118.2 (2)C5—C15—H15119.3
C9—C8—S3119.5 (2)C15—N1—C10118.5 (3)
C8—C9—C11117.1 (2)C4—O1—H1109.5
C8—C9—C10122.8 (3)C3—S1—H1A109.5
C11—C9—C10120.0 (3)C7—S2—H2A109.5
N1—C10—C9109.9 (2)C8—S3—H3A109.5
Hydrogen-bond geometry (Å, °) top
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.821.872.591 (3)147
Table 1
Hydrogen-bond geometry (Å, °)
top
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.821.872.591 (3)147
references
References top

Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19.

Enraf–Nonius (1989). CAD-4 Software. Enraf–Nonius, Delft, The Netherlands.

Harms, K. & Wocadlo, S. (1995). XCAD4. University of Marburg, Germany.

North, A. C. T., Phillips, D. C. & Mathews, F. S. (1968). Acta Cryst. A24, 351–359.

Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122.

Shi, L., Ge, H.-M., Tan, S.-H., Li, H.-Q., Song, Y.-C., Zhu, H.-L. & Tan, R.-X. (2007). Eur. J. Med. Chem. 42, 558–564.