organic compounds
Ethyl 2-(3,3-dibutylthioureido)-4,5,6,7-tetrahydrobenzo[b]thiophene-3-carboxylate
aInstitute of Medicinal Chemistry, Yunyang Medical College, Shiyan 442000, People's Republic of China
*Correspondence e-mail: zengken@126.com
In the title compound, C20H32N2O2S2, the cyclohexene ring is disordered over two half-boat conformations with occupancy factors of 0.71:0.29. One n-butyl chain is also disordered over two positions with occupancy factors of 0.83:0.17. The molecular conformation is stabilized by an intramolecular N—H⋯O hydrogen bond.
Related literature
For the synthesis and biological activity of thienopyrimidin-4(3H)-one derivatives, see: De Laszlo et al. (1992a,b); Taguchi et al. (1993a,b); Walter (1999a,b); Ding et al. (2004); Santagati et al. (2003); Abbott GmbH Co KG (2004a, 2004b); Walter & Zeun (2004); Ford et al. (2004a,b); Duval et al. (2005); Waehaelae et al. (2004a,b). For a description of the Cambridge Structural Database, see: Allen (2002). For related structures, see: Xu et al. (2005); Zeng et al. (2005, 2006, 2007, 2008, 2009); Wang et al. (2007, 2008); Zheng et al. (2007); Xie et al. (2008).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 2001); cell SAINT (Bruker, 2001); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: SHELXTL97 (Sheldrick, 2008).
Supporting information
10.1107/S1600536809047230/rz2377sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809047230/rz2377Isup2.hkl
To a solution of ethyl 2-thiocyanato-4,5,6,7-tetrahydrobenzo[b]thiophene -3-carboxylate (3 mmol) prepared according to Zeng et al. (2005) in CH3CN (15 ml) was added dibutylamine (3 mmol) at room temperature, and the reaction mixture was stirred for 6 h. The solvent was removed under reduced pressure and the residue was recrystallized from EtOH to give the title compound in yield of 81% (m.p. 442 K). Elemental analysis:calculated for C20H32N2O2S2: C, 60.57; H, 8.13; N, 7.06. Found: C, 59.34; H, 8.55; N, 6.67%. Crystals suitable for X-ray
were obtained by slow evaporation of a hexane/dichloromethane (1:3 v/v) solution at room temperature.The C4, C5 carbon atoms of the cyclohexene ring and the C15, C16 carbon atoms of one n-butyl chain are disordered over two positions with site occupancy factors of 0.71:0.29 and 0.83:0.17, respectively. During the
the C—C bond lengths involving the disordered carbon atoms have been constrained to be 1.54 (1) Å. The H atom attached to atom N1 was located in a difference Fourier map and allowed to ride with a restraint of N—H = 0.86 Å. Other H atoms were placed at calculated positions and treated as riding atoms, with C—H = 0.96–0.97 Å, and Uiso(H) = 1.2 Ueq(C) or 1.5 Ueq(C) for methyl H atoms.Data collection: SMART (Bruker, 2001); cell
SAINT (Bruker, 2001); data reduction: SAINT (Bruker, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: SHELXTL97 (Sheldrick, 2008).C20H32N2O2S2 | F(000) = 856 |
Mr = 396.60 | Dx = 1.203 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 9055 reflections |
a = 10.9311 (11) Å | θ = 2.2–27.6° |
b = 21.715 (3) Å | µ = 0.26 mm−1 |
c = 9.6841 (3) Å | T = 292 K |
β = 107.711 (12)° | Block, colourless |
V = 2189.8 (4) Å3 | 0.36 × 0.30 × 0.25 mm |
Z = 4 |
Bruker SMART CCD area-detector diffractometer | 4036 independent reflections |
Radiation source: fine-focus sealed tube | 3460 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.027 |
ϕ and ω scans | θmax = 25.5°, θmin = 2.1° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −13→13 |
Tmin = 0.903, Tmax = 0.938 | k = −21→26 |
12194 measured reflections | l = −11→11 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.073 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.153 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.21 | w = 1/[σ2(Fo2) + (0.0275P)2 + 2.0031P] where P = (Fo2 + 2Fc2)/3 |
4036 reflections | (Δ/σ)max < 0.001 |
280 parameters | Δρmax = 0.30 e Å−3 |
13 restraints | Δρmin = −0.23 e Å−3 |
C20H32N2O2S2 | V = 2189.8 (4) Å3 |
Mr = 396.60 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 10.9311 (11) Å | µ = 0.26 mm−1 |
b = 21.715 (3) Å | T = 292 K |
c = 9.6841 (3) Å | 0.36 × 0.30 × 0.25 mm |
β = 107.711 (12)° |
Bruker SMART CCD area-detector diffractometer | 4036 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 3460 reflections with I > 2σ(I) |
Tmin = 0.903, Tmax = 0.938 | Rint = 0.027 |
12194 measured reflections |
R[F2 > 2σ(F2)] = 0.073 | 13 restraints |
wR(F2) = 0.153 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.21 | Δρmax = 0.30 e Å−3 |
4036 reflections | Δρmin = −0.23 e Å−3 |
280 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
C1 | 1.0984 (4) | −0.00230 (16) | 0.7833 (4) | 0.0631 (9) | |
C2 | 1.1175 (5) | −0.0488 (2) | 0.9023 (5) | 0.0856 (12) | |
H2A | 1.0446 | −0.0765 | 0.8804 | 0.103* | 0.71 |
H2B | 1.1237 | −0.0280 | 0.9928 | 0.103* | 0.71 |
H2C | 1.0714 | −0.0361 | 0.9687 | 0.103* | 0.29 |
H2D | 1.0832 | −0.0882 | 0.8616 | 0.103* | 0.29 |
C3 | 1.2396 (7) | −0.0852 (4) | 0.9174 (11) | 0.097 (2) | 0.71 |
H3A | 1.2660 | −0.1048 | 1.0119 | 0.117* | 0.71 |
H3B | 1.2207 | −0.1175 | 0.8448 | 0.117* | 0.71 |
C4 | 1.3461 (8) | −0.0488 (4) | 0.9018 (8) | 0.093 (2) | 0.71 |
H4A | 1.4202 | −0.0754 | 0.9147 | 0.112* | 0.71 |
H4B | 1.3686 | −0.0177 | 0.9771 | 0.112* | 0.71 |
C4' | 1.315 (2) | −0.0763 (7) | 0.8441 (17) | 0.077 (5) | 0.29 |
H4'1 | 1.4018 | −0.0918 | 0.8832 | 0.092* | 0.29 |
H4'2 | 1.2627 | −0.1081 | 0.7835 | 0.092* | 0.29 |
C3' | 1.2569 (14) | −0.0586 (11) | 0.9758 (17) | 0.113 (9) | 0.29 |
H3'1 | 1.2705 | −0.0918 | 1.0458 | 0.135* | 0.29 |
H3'2 | 1.2968 | −0.0215 | 1.0251 | 0.135* | 0.29 |
C5 | 1.3142 (4) | −0.01737 (18) | 0.7532 (4) | 0.0751 (10) | |
H5A | 1.3787 | 0.0136 | 0.7554 | 0.090* | 0.71 |
H5B | 1.3163 | −0.0476 | 0.6803 | 0.090* | 0.71 |
H5C | 1.3789 | 0.0116 | 0.8067 | 0.090* | 0.29 |
H5D | 1.3339 | −0.0286 | 0.6653 | 0.090* | 0.29 |
C6 | 1.1838 (3) | 0.01239 (15) | 0.7127 (3) | 0.0577 (8) | |
C7 | 1.1347 (3) | 0.05951 (15) | 0.6064 (3) | 0.0551 (8) | |
C8 | 1.0133 (3) | 0.07897 (14) | 0.6033 (3) | 0.0542 (7) | |
C9 | 1.1975 (3) | 0.08581 (17) | 0.5067 (4) | 0.0634 (9) | |
C10 | 1.3820 (4) | 0.0835 (2) | 0.4231 (5) | 0.0951 (14) | |
H10A | 1.3581 | 0.1259 | 0.3967 | 0.114* | |
H10B | 1.4735 | 0.0824 | 0.4730 | 0.114* | |
C11 | 1.3540 (5) | 0.0462 (2) | 0.2931 (5) | 0.1069 (16) | |
H11A | 1.3741 | 0.0040 | 0.3193 | 0.160* | |
H11B | 1.4048 | 0.0602 | 0.2340 | 0.160* | |
H11C | 1.2646 | 0.0498 | 0.2398 | 0.160* | |
C12 | 0.8369 (3) | 0.15459 (17) | 0.5066 (4) | 0.0659 (9) | |
C13 | 0.6951 (5) | 0.2433 (2) | 0.4072 (6) | 0.1029 (15) | |
H13A | 0.6756 | 0.2414 | 0.4983 | 0.123* | |
H13B | 0.7147 | 0.2858 | 0.3911 | 0.123* | |
C14 | 0.5827 (5) | 0.2238 (3) | 0.2904 (6) | 0.1242 (19) | |
H14A | 0.5686 | 0.1800 | 0.2980 | 0.149* | 0.83 |
H14B | 0.5957 | 0.2317 | 0.1973 | 0.149* | 0.83 |
H14C | 0.5373 | 0.1905 | 0.3203 | 0.149* | 0.17 |
H14D | 0.6066 | 0.2106 | 0.2064 | 0.149* | 0.17 |
C15 | 0.4615 (9) | 0.2616 (5) | 0.3037 (12) | 0.181 (5) | 0.83 |
H15A | 0.3847 | 0.2396 | 0.2496 | 0.217* | 0.83 |
H15B | 0.4641 | 0.2612 | 0.4047 | 0.217* | 0.83 |
C16 | 0.4496 (12) | 0.3174 (5) | 0.2607 (16) | 0.232 (7) | 0.83 |
H16A | 0.5305 | 0.3381 | 0.2977 | 0.348* | 0.83 |
H16B | 0.3864 | 0.3376 | 0.2953 | 0.348* | 0.83 |
H16C | 0.4228 | 0.3184 | 0.1567 | 0.348* | 0.83 |
C15' | 0.4923 (18) | 0.2749 (12) | 0.213 (3) | 0.090 (8) | 0.17 |
H15C | 0.5365 | 0.3140 | 0.2372 | 0.108* | 0.17 |
H15D | 0.4727 | 0.2690 | 0.1094 | 0.108* | 0.17 |
C16' | 0.372 (2) | 0.2782 (14) | 0.248 (5) | 0.125 (13) | 0.17 |
H16D | 0.3180 | 0.3090 | 0.1892 | 0.188* | 0.17 |
H16E | 0.3897 | 0.2888 | 0.3487 | 0.188* | 0.17 |
H16F | 0.3298 | 0.2390 | 0.2303 | 0.188* | 0.17 |
C17 | 0.9008 (4) | 0.23002 (19) | 0.3483 (5) | 0.0814 (11) | |
H17A | 0.8536 | 0.2535 | 0.2637 | 0.098* | |
H17B | 0.9449 | 0.1968 | 0.3162 | 0.098* | |
C18 | 0.9998 (4) | 0.2719 (2) | 0.4523 (5) | 0.0897 (13) | |
H18A | 0.9553 | 0.3058 | 0.4813 | 0.108* | |
H18B | 1.0437 | 0.2487 | 0.5388 | 0.108* | |
C19 | 1.0961 (5) | 0.2970 (2) | 0.3882 (5) | 0.1017 (15) | |
H19A | 1.0523 | 0.3158 | 0.2955 | 0.122* | |
H19B | 1.1485 | 0.2635 | 0.3709 | 0.122* | |
C20 | 1.1828 (5) | 0.3447 (2) | 0.4862 (6) | 0.126 (2) | |
H20A | 1.1321 | 0.3792 | 0.4981 | 0.190* | |
H20B | 1.2465 | 0.3582 | 0.4432 | 0.190* | |
H20C | 1.2244 | 0.3266 | 0.5791 | 0.190* | |
N1 | 0.9493 (3) | 0.12572 (14) | 0.5138 (3) | 0.0637 (7) | |
H1A | 0.997 (3) | 0.1387 (16) | 0.464 (3) | 0.076* | |
N2 | 0.8108 (3) | 0.20414 (16) | 0.4177 (4) | 0.0801 (9) | |
O1 | 1.3122 (2) | 0.06116 (13) | 0.5196 (3) | 0.0769 (7) | |
O2 | 1.1519 (3) | 0.12628 (13) | 0.4189 (3) | 0.0869 (8) | |
S1 | 0.95706 (9) | 0.03954 (4) | 0.72506 (10) | 0.0662 (3) | |
S2 | 0.74212 (10) | 0.13005 (5) | 0.60210 (13) | 0.0823 (3) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.080 (2) | 0.060 (2) | 0.0549 (19) | −0.0045 (17) | 0.0284 (17) | −0.0010 (16) |
C2 | 0.106 (3) | 0.085 (3) | 0.075 (3) | 0.006 (2) | 0.041 (2) | 0.018 (2) |
C3 | 0.109 (6) | 0.097 (6) | 0.093 (6) | 0.026 (4) | 0.040 (5) | 0.035 (5) |
C4 | 0.094 (5) | 0.099 (6) | 0.083 (6) | 0.014 (5) | 0.021 (5) | 0.019 (4) |
C4' | 0.083 (12) | 0.078 (11) | 0.068 (10) | 0.020 (9) | 0.021 (9) | −0.004 (8) |
C3' | 0.18 (2) | 0.106 (17) | 0.053 (10) | 0.055 (16) | 0.040 (12) | 0.009 (9) |
C5 | 0.079 (2) | 0.074 (2) | 0.077 (3) | 0.010 (2) | 0.030 (2) | 0.006 (2) |
C6 | 0.0649 (19) | 0.0570 (19) | 0.0541 (18) | −0.0018 (16) | 0.0225 (15) | −0.0035 (15) |
C7 | 0.0634 (19) | 0.0523 (17) | 0.0542 (18) | −0.0054 (15) | 0.0248 (15) | −0.0023 (14) |
C8 | 0.0610 (18) | 0.0520 (18) | 0.0511 (17) | −0.0049 (15) | 0.0194 (15) | −0.0051 (14) |
C9 | 0.068 (2) | 0.062 (2) | 0.067 (2) | −0.0079 (17) | 0.0303 (18) | 0.0015 (18) |
C10 | 0.081 (3) | 0.113 (4) | 0.108 (4) | −0.012 (3) | 0.053 (3) | 0.013 (3) |
C11 | 0.111 (4) | 0.130 (4) | 0.102 (4) | −0.005 (3) | 0.065 (3) | 0.004 (3) |
C12 | 0.062 (2) | 0.065 (2) | 0.068 (2) | 0.0013 (17) | 0.0149 (17) | −0.0078 (18) |
C13 | 0.098 (3) | 0.094 (3) | 0.116 (4) | 0.013 (3) | 0.031 (3) | 0.008 (3) |
C14 | 0.090 (4) | 0.154 (5) | 0.118 (4) | 0.010 (4) | 0.015 (3) | 0.014 (4) |
C15 | 0.111 (7) | 0.256 (15) | 0.161 (9) | 0.068 (8) | 0.021 (6) | 0.083 (9) |
C16 | 0.180 (11) | 0.235 (14) | 0.296 (17) | 0.081 (11) | 0.096 (11) | 0.137 (14) |
C15' | 0.09 (2) | 0.087 (19) | 0.09 (2) | 0.015 (16) | 0.029 (17) | 0.017 (16) |
C16' | 0.10 (3) | 0.10 (2) | 0.18 (4) | −0.02 (2) | 0.05 (3) | 0.03 (2) |
C17 | 0.084 (3) | 0.076 (3) | 0.079 (3) | 0.008 (2) | 0.017 (2) | 0.016 (2) |
C18 | 0.092 (3) | 0.086 (3) | 0.087 (3) | −0.001 (2) | 0.020 (2) | 0.009 (2) |
C19 | 0.109 (4) | 0.089 (3) | 0.104 (4) | −0.005 (3) | 0.027 (3) | 0.015 (3) |
C20 | 0.119 (4) | 0.102 (4) | 0.137 (5) | −0.025 (3) | 0.007 (4) | 0.003 (4) |
N1 | 0.0641 (17) | 0.0633 (18) | 0.0680 (19) | 0.0034 (14) | 0.0262 (14) | 0.0037 (15) |
N2 | 0.073 (2) | 0.076 (2) | 0.090 (2) | 0.0137 (17) | 0.0216 (18) | 0.0066 (19) |
O1 | 0.0683 (15) | 0.0907 (19) | 0.0836 (18) | −0.0001 (14) | 0.0410 (14) | 0.0126 (14) |
O2 | 0.094 (2) | 0.0862 (19) | 0.095 (2) | 0.0115 (16) | 0.0501 (17) | 0.0313 (16) |
S1 | 0.0714 (6) | 0.0700 (6) | 0.0664 (6) | −0.0047 (4) | 0.0345 (4) | 0.0008 (4) |
S2 | 0.0682 (6) | 0.0924 (8) | 0.0923 (8) | −0.0011 (5) | 0.0333 (5) | −0.0054 (6) |
C1—C6 | 1.352 (4) | C12—N2 | 1.353 (5) |
C1—C2 | 1.498 (5) | C12—N1 | 1.362 (4) |
C1—S1 | 1.732 (4) | C12—S2 | 1.672 (4) |
C2—C3' | 1.488 (15) | C13—C14 | 1.457 (6) |
C2—C3 | 1.520 (8) | C13—N2 | 1.502 (5) |
C2—H2A | 0.9700 | C13—H13A | 0.9700 |
C2—H2B | 0.9700 | C13—H13B | 0.9700 |
C2—H2C | 0.9700 | C14—C15' | 1.522 (16) |
C2—H2D | 0.9700 | C14—C15 | 1.597 (9) |
C3—C4 | 1.452 (11) | C14—H14A | 0.9700 |
C3—H3A | 0.9700 | C14—H14B | 0.9700 |
C3—H3B | 0.9700 | C14—H14C | 0.9700 |
C4—C5 | 1.534 (7) | C14—H14D | 0.9700 |
C4—H4A | 0.9700 | C15—C16 | 1.274 (11) |
C4—H4B | 0.9700 | C15—H15A | 0.9700 |
C4'—C5 | 1.552 (14) | C15—H15B | 0.9700 |
C4'—C3' | 1.63 (2) | C16—H16A | 0.9600 |
C4'—H4'1 | 0.9700 | C16—H16B | 0.9600 |
C4'—H4'2 | 0.9700 | C16—H16C | 0.9600 |
C3'—H3'1 | 0.9700 | C15'—C16' | 1.454 (19) |
C3'—H3'2 | 0.9700 | C15'—H15C | 0.9700 |
C5—C6 | 1.505 (5) | C15'—H15D | 0.9700 |
C5—H5A | 0.9700 | C16'—H16D | 0.9600 |
C5—H5B | 0.9700 | C16'—H16E | 0.9600 |
C5—H5C | 0.9700 | C16'—H16F | 0.9600 |
C5—H5D | 0.9700 | C17—N2 | 1.461 (5) |
C6—C7 | 1.435 (4) | C17—C18 | 1.532 (6) |
C7—C8 | 1.385 (4) | C17—H17A | 0.9700 |
C7—C9 | 1.460 (4) | C17—H17B | 0.9700 |
C8—N1 | 1.380 (4) | C18—C19 | 1.480 (6) |
C8—S1 | 1.715 (3) | C18—H18A | 0.9700 |
C9—O2 | 1.219 (4) | C18—H18B | 0.9700 |
C9—O1 | 1.333 (4) | C19—C20 | 1.524 (6) |
C10—C11 | 1.449 (6) | C19—H19A | 0.9700 |
C10—O1 | 1.458 (4) | C19—H19B | 0.9700 |
C10—H10A | 0.9700 | C20—H20A | 0.9600 |
C10—H10B | 0.9700 | C20—H20B | 0.9600 |
C11—H11A | 0.9600 | C20—H20C | 0.9600 |
C11—H11B | 0.9600 | N1—H1A | 0.86 (3) |
C11—H11C | 0.9600 | ||
C6—C1—C2 | 126.3 (4) | C10—C11—H11B | 109.5 |
C6—C1—S1 | 113.3 (3) | H11A—C11—H11B | 109.5 |
C2—C1—S1 | 120.4 (3) | C10—C11—H11C | 109.5 |
C3'—C2—C1 | 110.3 (8) | H11A—C11—H11C | 109.5 |
C1—C2—C3 | 109.7 (4) | H11B—C11—H11C | 109.5 |
C3'—C2—H2A | 132.0 | N2—C12—N1 | 114.3 (3) |
C1—C2—H2A | 109.7 | N2—C12—S2 | 124.0 (3) |
C3—C2—H2A | 109.7 | N1—C12—S2 | 121.7 (3) |
C3'—C2—H2B | 81.6 | C14—C13—N2 | 112.5 (4) |
C1—C2—H2B | 109.7 | C14—C13—H13A | 109.1 |
C3—C2—H2B | 109.7 | N2—C13—H13A | 109.1 |
H2A—C2—H2B | 108.2 | C14—C13—H13B | 109.1 |
C3'—C2—H2C | 112.7 | N2—C13—H13B | 109.1 |
C1—C2—H2C | 109.8 | H13A—C13—H13B | 107.8 |
C3—C2—H2C | 134.6 | C13—C14—C15' | 116.0 (11) |
H2A—C2—H2C | 76.3 | C13—C14—C15 | 108.2 (6) |
C3'—C2—H2D | 106.3 | C13—C14—H14A | 110.1 |
C1—C2—H2D | 109.6 | C15'—C14—H14A | 131.1 |
C3—C2—H2D | 78.4 | C15—C14—H14A | 110.1 |
H2B—C2—H2D | 133.7 | C13—C14—H14B | 110.1 |
H2C—C2—H2D | 107.8 | C15—C14—H14B | 110.1 |
C4—C3—C2 | 114.6 (6) | H14A—C14—H14B | 108.4 |
C4—C3—H3A | 108.6 | C13—C14—H14C | 111.9 |
C2—C3—H3A | 108.6 | C15'—C14—H14C | 112.0 |
C4—C3—H3B | 108.6 | H14B—C14—H14C | 130.0 |
C2—C3—H3B | 108.6 | C13—C14—H14D | 111.0 |
H3A—C3—H3B | 107.6 | C15'—C14—H14D | 95.9 |
C3—C4—C5 | 112.3 (7) | C15—C14—H14D | 131.3 |
C3—C4—H4A | 109.2 | H14C—C14—H14D | 108.9 |
C5—C4—H4A | 109.2 | C16—C15—C14 | 117.9 (11) |
C3—C4—H4B | 109.2 | C16—C15—H15A | 107.8 |
C5—C4—H4B | 109.2 | C14—C15—H15A | 107.8 |
H4A—C4—H4B | 107.9 | C16—C15—H15B | 107.8 |
C5—C4'—C3' | 108.2 (12) | C14—C15—H15B | 107.8 |
C5—C4'—H4'1 | 110.1 | H15A—C15—H15B | 107.2 |
C3'—C4'—H4'1 | 110.1 | C16'—C15'—C14 | 114.7 (19) |
C5—C4'—H4'2 | 110.1 | C16'—C15'—H15C | 108.6 |
C3'—C4'—H4'2 | 110.1 | C14—C15'—H15C | 108.6 |
H4'1—C4'—H4'2 | 108.4 | C16'—C15'—H15D | 108.6 |
C2—C3'—C4' | 104.1 (12) | C14—C15'—H15D | 108.6 |
C2—C3'—H3'1 | 110.9 | H15C—C15'—H15D | 107.6 |
C4'—C3'—H3'1 | 110.9 | C15'—C16'—H16D | 109.5 |
C2—C3'—H3'2 | 110.9 | C15'—C16'—H16E | 109.5 |
C4'—C3'—H3'2 | 110.9 | H16D—C16'—H16E | 109.5 |
H3'1—C3'—H3'2 | 109.0 | C15'—C16'—H16F | 109.5 |
C6—C5—C4 | 111.3 (4) | H16D—C16'—H16F | 109.5 |
C6—C5—C4' | 110.0 (8) | H16E—C16'—H16F | 109.5 |
C6—C5—H5A | 109.4 | N2—C17—C18 | 111.4 (4) |
C4—C5—H5A | 109.4 | N2—C17—H17A | 109.3 |
C4'—C5—H5A | 133.0 | C18—C17—H17A | 109.3 |
C6—C5—H5B | 109.4 | N2—C17—H17B | 109.3 |
C4—C5—H5B | 109.4 | C18—C17—H17B | 109.3 |
H5A—C5—H5B | 108.0 | H17A—C17—H17B | 108.0 |
C6—C5—H5C | 109.9 | C19—C18—C17 | 113.1 (4) |
C4'—C5—H5C | 110.8 | C19—C18—H18A | 108.9 |
H5B—C5—H5C | 130.8 | C17—C18—H18A | 108.9 |
C6—C5—H5D | 108.9 | C19—C18—H18B | 108.9 |
C4—C5—H5D | 131.5 | C17—C18—H18B | 109.0 |
C4'—C5—H5D | 109.0 | H18A—C18—H18B | 107.8 |
H5C—C5—H5D | 108.1 | C18—C19—C20 | 112.1 (4) |
C1—C6—C7 | 111.5 (3) | C18—C19—H19A | 109.2 |
C1—C6—C5 | 120.8 (3) | C20—C19—H19A | 109.2 |
C7—C6—C5 | 127.6 (3) | C18—C19—H19B | 109.2 |
C8—C7—C6 | 112.3 (3) | C20—C19—H19B | 109.2 |
C8—C7—C9 | 120.4 (3) | H19A—C19—H19B | 107.9 |
C6—C7—C9 | 127.2 (3) | C19—C20—H20A | 109.5 |
N1—C8—C7 | 122.5 (3) | C19—C20—H20B | 109.5 |
N1—C8—S1 | 125.5 (2) | H20A—C20—H20B | 109.5 |
C7—C8—S1 | 112.0 (2) | C19—C20—H20C | 109.5 |
O2—C9—O1 | 121.9 (3) | H20A—C20—H20C | 109.5 |
O2—C9—C7 | 124.6 (3) | H20B—C20—H20C | 109.5 |
O1—C9—C7 | 113.5 (3) | C12—N1—C8 | 130.4 (3) |
C11—C10—O1 | 111.0 (4) | C12—N1—H1A | 121 (3) |
C11—C10—H10A | 109.4 | C8—N1—H1A | 109 (3) |
O1—C10—H10A | 109.4 | C12—N2—C17 | 123.9 (3) |
C11—C10—H10B | 109.4 | C12—N2—C13 | 120.2 (4) |
O1—C10—H10B | 109.4 | C17—N2—C13 | 114.9 (3) |
H10A—C10—H10B | 108.0 | C9—O1—C10 | 117.8 (3) |
C10—C11—H11A | 109.5 | C8—S1—C1 | 90.86 (16) |
C6—C1—C2—C3' | 23.4 (10) | C6—C7—C9—O2 | −179.4 (4) |
S1—C1—C2—C3' | −155.7 (8) | C8—C7—C9—O1 | −178.1 (3) |
C6—C1—C2—C3 | −9.1 (7) | C6—C7—C9—O1 | 0.8 (5) |
S1—C1—C2—C3 | 171.9 (5) | N2—C13—C14—C15' | −145.7 (11) |
C3'—C2—C3—C4 | −57.1 (15) | N2—C13—C14—C15 | 171.8 (5) |
C1—C2—C3—C4 | 39.8 (10) | C13—C14—C15—C16 | 76.9 (14) |
C2—C3—C4—C5 | −59.9 (11) | C15'—C14—C15—C16 | −32.1 (19) |
C1—C2—C3'—C4' | −54.3 (15) | C13—C14—C15'—C16' | −106 (3) |
C3—C2—C3'—C4' | 40.2 (10) | C15—C14—C15'—C16' | −19 (2) |
C5—C4'—C3'—C2 | 71.5 (17) | N2—C17—C18—C19 | 177.6 (4) |
C3—C4—C5—C6 | 45.6 (9) | C17—C18—C19—C20 | 172.7 (4) |
C3—C4—C5—C4' | −48.1 (16) | N2—C12—N1—C8 | 171.8 (3) |
C3'—C4'—C5—C6 | −50.6 (14) | S2—C12—N1—C8 | −7.6 (5) |
C3'—C4'—C5—C4 | 47.6 (13) | C7—C8—N1—C12 | −172.7 (3) |
C2—C1—C6—C7 | −179.1 (4) | S1—C8—N1—C12 | 5.7 (5) |
S1—C1—C6—C7 | 0.0 (4) | N1—C12—N2—C17 | −7.3 (5) |
C2—C1—C6—C5 | −1.7 (6) | S2—C12—N2—C17 | 172.2 (3) |
S1—C1—C6—C5 | 177.4 (3) | N1—C12—N2—C13 | −175.5 (3) |
C4—C5—C6—C1 | −15.9 (6) | S2—C12—N2—C13 | 3.9 (5) |
C4'—C5—C6—C1 | 17.0 (8) | C18—C17—N2—C12 | −81.1 (5) |
C4—C5—C6—C7 | 161.0 (5) | C18—C17—N2—C13 | 87.7 (4) |
C4'—C5—C6—C7 | −166.1 (7) | C14—C13—N2—C12 | −92.5 (5) |
C1—C6—C7—C8 | 0.8 (4) | C14—C13—N2—C17 | 98.3 (5) |
C5—C6—C7—C8 | −176.3 (3) | O2—C9—O1—C10 | −0.9 (6) |
C1—C6—C7—C9 | −178.1 (3) | C7—C9—O1—C10 | 178.9 (3) |
C5—C6—C7—C9 | 4.8 (6) | C11—C10—O1—C9 | −92.2 (5) |
C6—C7—C8—N1 | 177.3 (3) | N1—C8—S1—C1 | −177.4 (3) |
C9—C7—C8—N1 | −3.7 (5) | C7—C8—S1—C1 | 1.1 (3) |
C6—C7—C8—S1 | −1.3 (4) | C6—C1—S1—C8 | −0.7 (3) |
C9—C7—C8—S1 | 177.7 (3) | C2—C1—S1—C8 | 178.5 (3) |
C8—C7—C9—O2 | 1.8 (6) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···O2 | 0.86 (3) | 1.89 (2) | 2.643 (4) | 145 (3) |
Experimental details
Crystal data | |
Chemical formula | C20H32N2O2S2 |
Mr | 396.60 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 292 |
a, b, c (Å) | 10.9311 (11), 21.715 (3), 9.6841 (3) |
β (°) | 107.711 (12) |
V (Å3) | 2189.8 (4) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.26 |
Crystal size (mm) | 0.36 × 0.30 × 0.25 |
Data collection | |
Diffractometer | Bruker SMART CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.903, 0.938 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 12194, 4036, 3460 |
Rint | 0.027 |
(sin θ/λ)max (Å−1) | 0.606 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.073, 0.153, 1.21 |
No. of reflections | 4036 |
No. of parameters | 280 |
No. of restraints | 13 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.30, −0.23 |
Computer programs: SMART (Bruker, 2001), SAINT (Bruker, 2001), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), PLATON (Spek, 2009), SHELXTL97 (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···O2 | 0.86 (3) | 1.89 (2) | 2.643 (4) | 145 (3) |
Acknowledgements
We gratefully acknowledge financial support of this work by the National Basic Research Program of China (2003CB114400), the National Natural Science Foundation of China (20372023, 20102001), the Educational Commission of Hubei Province of China (grant No. D20092406, B20092412), the Shiyan Municipal Science and Technology Bureau (grant No. 20061835), and Yunyang Medical College (grant Nos. 2007QDJ14, 2007QDJ15, 2007ZQB19).
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The derivatives of heterocycles containing the thienopyrimidine system, which are well known bioisosteres of quinazolines, are of great importance because of their remarkable biological properties, including antimicrobial or antifungal activities (De Laszlo et al., 1992a,b; Walter, 1999a,b; Ding et al., 2004; Walter & Zeun, 2004), significant 5-HT1A and 5-HT1B receptor activities (Taguchi et al., 1993a,b; Abbott GmbH & Co. KG, 2004a,b), potential selective COX-2 enzyme inhibitor activity (Santagati, et al., 2004), 17beta-hydroxysteroid dehydrogenase inhibitor activity (Waehaelae et al., 2004a,b), potassium channel inhibitor activity (Ford et al., 2004a,b), and tissue transglutaminase inhibitor activity (Duval et al., 2005). Recently, our group has been engaged in the preparation of derivatives of thienopyrimidin-4(3H)-one via aza-Wittig reaction of beta-ethoxycarbonyl iminophosphorane with CS2. As a continuation of our research for new biologically active heterocycles, the title compound was obtained as an intermediate product from beta-ethoxycarbonyl iminophosphorane in CS2 and structurally characterized in order to elucidate the cyclization mechanism involved in the reaction.
In the title compound (Fig. 1), bond lengths within the benzothiophene ring system are in good agreement with those observed for closely related structures (Xu et al., 2005; Zeng et al., 2005, 2006, 2007, 2008, 2009; Wang et al., 2007, 2008; Zheng et al., 2007; Xie et al., 2008), and in the ranges of values observed in previously reported structures in the Cambridge Structural Database (Version 5.26; Allen, 2002). The theiophene ring is planar, with a maximum displacement of 0.008 (3)Å for atom C8. The attached cyclohexene ring is disordered over two half-chair conformations with site occupancy factors of 0.71:0.29. A n-butyl chain is also disordered over two positions with site occupancy factors of 0.83:0.17. The molecular conformation is stabilized by an intramolecular N—H···O hydrogen bond (Table 1). The crystal packing is enforced only by van der Waals interactions.