research papers
Structure, hydrogen bonding and
of ammonium carbonate monohydrateaDepartment of Earth and Planetary Sciences, Birbeck, University of London, Malet Street, London WC1E 7HX, England, bDepartment of Earth Sciences, University College London, Gower Street, London WC1E 6BT, England, cInstituto de Ciencia de Materiales de Madrid, Campus de Cantoblanco, 28049 Madrid, Spain, dISIS Facility, Rutherford Appleton Laboratory, Harwell Science and Innovation Campus, Didcot, Oxfordshire OX11 0QX, England, and eSchool of Chemisty, University of Bristol, Bristol BS8 1TS, England
*Correspondence e-mail: andrew.fortes@ucl.ac.uk
We have determined the 4)2CO3·H2O, using Laue single-crystal diffraction methods with pulsed neutron radiation. The crystal is orthorhombic, Pnma (Z = 4), with unit-cell dimensions a = 12.047 (3), b = 4.453 (1), c = 11.023 (3) Å and V = 591.3 (3) Å3 [ρcalc = 1281.8 (7) kg m−3] at 10 K. The single-crystal data collected at 10 and 100 K are complemented by X-ray powder diffraction data measured from 245 to 273 K, Raman spectra measured from 80 to 263 K and an athermal zero-pressure calculation of the electronic structure and phonon spectrum carried out using density functional theory (DFT). We find no evidence of a between 10 and 273 K; above 273 K, however, the title compound transforms first to ammonium sesquicarbonate monohydrate and subsequently to ammonium bicarbonate. The crystallographic and spectroscopic data and the calculations reveal a quite strongly hydrogen-bonded structure (EHB ≃ 30–40 kJ mol−1), on the basis of H⋯O bond lengths and the topology of the electron density at the bond critical points, in which there is no of the ammonium cation at any temperature. The barrier to of the ammonium ions is estimated from the observed librational frequency to be ∼ 36 kJ mol−1. The c-axis exhibits negative but the behaviour of the a and b axes is ormal.
of ammonium carbonate monohydrate, (NH1. Introduction
Interactions between the most simple of molecules are of fundamental interest across diverse areas of the physical sciences, as well as underpinning a number of important industrial and biological processes; the ternary system H2O–CO2–NH3 is no exception. As shown in Fig. 1, many different solid phases crystallize in this system, including a number of ternary compounds, these being ammonium carbonate monohydrate [(NH4)2CO3·H2O], ammonium sesquicarbonate monohydrate [(NH4)4(H2(CO3)3·H2O] and ammonium bicarbonate [(NH4)2HCO3]. Since the earliest contribution to our knowledge of these materials (e.g. Davy, 1800) there have been numerous contradictory observations regarding both the correct composition of the solid phases (cf. Divers, 1870) and accurate solid–liquid phase equilibria (Terres & Weiser, 1921; Terres & Behrens, 1928; Jänecke, 1929; Guyer et al., 1940; Guyer & Piechowiez, 1944, 1945; Verbrugge, 1979; Kargel, 1992), in part due to a tendency for mixtures of phases to crystallize, for equilibrium to be slow to achieve and the instability of the `normal' ammonium carbonate in air. Indeed the composition of commercially available ammonium carbonate has been questioned in the scientific literature up until relatively recently (Sclar & Carrison, 1963; Kuhn et al., 2007); a sample of `ammonium carbonate' we purchased from Sigma-Aldrich (207861, ACS reagent, ≥ 30.0% NH3 basis) and stored at room temperature proved to consist principally of ammonium carbamate (NH4·NH2CO2). It is therefore curious that there has been so little interest in the structure and properties of these comparatively innocuous materials, considering the extensive crystallographic studies of related compounds that are either toxic (ammonium oxalate) or explosive (ammonium chlorate and ammonium nitrate). The structure of ammonium sesquicarbonate monohydrate was reported for the first time just over 10 years ago (Margraf et al., 2003), whilst the last paper of any significance on the crystallography of ammonium carbonate mononhydrate was published 140 years ago (Divers, 1870); the first determination of its structure and properties form the basis of this work.
Of the compounds shown in Fig. 1, only ammonium bicarbonate is known to occur naturally on Earth, as the mineral teschemacherite. This substance is found in layers of guano in South Africa and South America (Teschemacher, 1846: Ulex, 1848: Phipson, 1863) and in geothermal waters from New Zealand (Browne, 1972). It is possible that ammonium carbonate monohydrate can also occur in the faecal deposits of marine birds in periglacial environments but has hitherto eluded discovery by virtue, amongst other things, of being unstable in air above 273 K.
Ammonium carbonate is more likely to occur as an abundant mineral outside the Earth. Carbon dioxide, ammonia and water are common in interstellar, cometary and planetary ices (Allamandola et al., 1999; Mumma & Charnley, 2011; Clark et al., 2013) and models have indicated that condensation of ice and ammonium carbonate should have occurred in the primitive solar nebula (Lewis & Prinn, 1980). Interaction of CO2 with aqueous ammonia during the accretion or differentiation of icy planetary bodies is likely to have sequestered any free ammonia in the form of solid ammonium carbonates (Kargel, 1992), and this is the leading hypothesis for the lack of any appreciable ammonia or ammonia hydrates on planetary surfaces. It is plausible, therefore, that ammonium carbonates are major `rock-forming' minerals in the outer solar system. This has prompted interest in extending current Pitzer potential models to accommodate likely phase assemblages produced by freezing of aqueous ammonia- and ammonium-bearing liquids in the outer solar system (Marion et al., 2012), such as may occur in subsurface seas and global oceans inside Saturn's moons Enceladus and Titan. In the same context, ammonium carbonates may have some astrobiological relevance. Being relatively refractory (and thus stable) compared with other solar system ices, ammonium carbonates represent a potentially important reservoir of C, H, O and N that may be processed by energetic phenomena into pre-biotic molecules. For example, radiolysis of ammonium carbonate has been demonstrated to produce simple amino acids (Hartman et al., 1993). Conversely, ammonium carbonate may be synthesized in situ on the surface of Saturn's giant satellite Titan. It is known from laboratory analogue experiments that the organic molecules produced photochemically in Titan's dense N2/CH4 atmosphere may be hydrolyzed in aqueous ammonia to form both urea and amino acids (Poch et al., 2012). Further hydrolysis of urea would be expected to form ammonium carbonates (Clark et al., 1933); on Earth, this process is mediated in soils with the aid of bacterial urease, whereafter the carbonate breaks down to ammonia and water (e.g. Chin & Kroontje, 1963). On Titan, meteorite impacts into the icy bedrock would provide the requisite liquid in the form of impact melt to hydrolyse any solid organics (Artemieva & Lunine, 2003, 2005) and both urea and ammonium carbonate may be substantial by-products, persisting on geological timescales at the surface temperature of 95 K.
As part of a long-term program of studying planetary ices, we are investigating the interaction of both reduced carbon and oxidized carbon with other volatiles to produce non-stoichiometric compounds (such as clathrates) and stoichiometric compounds (such as carbonates). Our aims here are:
2. Experimental and computational methods
2.1. Sample preparation, X-ray powder diffraction and indexing
Crystals were grown by exposing a beaker filled with aqueous ammonia (Sigma-Aldrich 320145 ACS reagent grade, 28–30% NH3) to a CO2-rich atmosphere inside a loosely sealed plastic bag charged with dry-ice pellets. Crystals up to several centimetres in length grew rapidly, their morphology (Fig. 2) closely resembling that described by Divers (1870). The distinct herringbone pattern and hollowed-out terminating faces remarked upon by Divers are apparent in our crystals. We established by X-ray diffraction methods that the broad face marked `2' in Fig. 2(a) is the (0 1 0) pinacoid. Visual inspection of our microphotographs leads us to conclude that faces 3, 4 and 5 in Fig. 2(a) represent the orthorhombic prism form {2 1 0}, whilst faces 6 and 7 represent the {1 1 2} bipyramid. Both {1 0 0} and {1 0 2} forms occur but we have not made a detailed morphological or goniometric study. For comparison, a morphological analysis of ammonium sesquicarbonate and bicarbonate crystals is provided by Sainte-Claire Deville (1854).
Since the crystals readily lose ammonia at room temperature, all handling and characterization was carried out at low temperatures in UCL Earth Science's Cold Room suite (air temperatures 263–253 K). The large prismatic crystals were easily extracted from the growth solvent and dried on filter paper. The initial identification of these crystals was carried out using X-ray powder diffraction methods, for which purpose the crystals were ground to a powder in a stainless-steel pestle and mortar under liquid nitrogen. The measurements were performed on our custom-made portable cold stage (Wood et al., 2012); this device was pre-chilled in a chest freezer at 250 K before being loaded. The stage's Peltier cooling device was connected to a power supply in the X-ray diffractometer enclosure within 30 s of leaving the cold room, ensuring that the specimen did not warm substantially above 253 K prior to the start of the measurement.
X-ray powder diffraction data were acquired on the cold stage at 245 K using a PANalytical X'Pert Pro diffractometer with Ge monochromated Co Kα1 radiation (λ = 1.789001 Å). Comparatively weak Bragg peaks from water ice were identified, probably due to frozen mother liquor occluded within the crystals; however, the remaining peaks did not match any of the other possible known phases in the H2O–CO2–NH3 ternary system and no other match was found in the ICDD by the proprietary PANalytical `High-Score' software. It is worth noting that the ICDD pattern described as `(NH4)2CO3·H2O' with peak positions tabulated by Hanawalt et al. (1938; pattern no. 31), which was presumably measured at room temperature, was suggested to be a double salt of ammonium carbamate and ammonium bicarbonate by Sclar & Carrison (1963). A successful indexing of our unidentified peaks was achieved using DICVOL06 (Boultif & Louër, 2004), which yielded an orthorhombic of dimensions a = 12.129 (3), b = 4.480 (2), c = 10.998 (3) Å and V = 597.6 Å3 at 245 K. Analysis of the in the diffraction pattern constrained the to one of two possibilities, Pnma or Pn21a.
Additional X-ray powder diffraction data were collected at 273 and 291 K by reducing the power supplied to the cold stage. One last GSAS/Expgui package (Larsen & Von Dreele, 2000: Toby, 2001).
of ammonium carbonate monohydrate crystals was crushed and allowed to sit in air at 299 K for 2 h; this material was powdered and then loaded into a standard spinner sample holder for X-ray powder under air at room temperature. Powder diffraction data were analysed using the2.2. Neutron single-crystal diffraction and structure solution
A single crystal of the title compound was cut into two crude cuboids in the UCL Earth Sciences cold room, one approximately 4 × 4 × 4 mm and the other roughly half the size. The crystals demonstrated an unfortunate propensity to cleave parallel to their well developed (0 1 0) faces whilst being cut. These two crystals were loaded together into a vanadium tube of 6 mm internal bore and transported to the ISIS neutron facility under liquid nitrogen. The sample canister was screwed to the end of a centre stick whilst being kept immersed in liquid nitrogen and was then transferred directly to a closed-cycle-refrigerator (equilibrated at 100 K) on the SXD beamline (Keen et al., 2006). After cooling to 10 K, time-of-flight (t.o.f.) Laue data were collected in a series of five orientations, counting each for ∼ 4.5 h. The diffraction spots were indexed with the obtained at 245 K, after which the intensities were extracted using the three-dimensional profile fitting method implemented in SXD2001 (Gutmann, 2005).
The crystals were removed from the beamline in order to measure another specimen, and subsequently re-mounted after being stored for 2 d under L-N2, whereupon a second set of t.o.f. Laue data were obtained at 100 K; these were collected over five orientations, counting each for ∼ 3 h.
The 10 K data were used to solve the structure by SHELX2014 (Sheldrick, 2008; Gruene et al., 2014). The program SHELXS was used to locate positive scattering density peaks corresponding to the non-H atoms in the structure, and with SHELXL was subsequently used to identify the residual negative peaks due to hydrogen (arising from the negative neutron scattering length of 1H). All atomic coordinates were refined anisotropically to yield the agreement factors listed in Table 1. The maximum and minimum peaks in the difference Fourier, Δρ = Fobs − Fcalc, may seem rather large in comparison to similar X-ray diffraction measurements and are better understood by reference to the `observed' nuclear scattering density map, Fobs, shown in Fig. 3; the difference maxima have magnitudes approximately 1% of the full range of scattering densities and are equivalent to approximately 5% of the scattering density due to a H atom. Consequently, these `large' residual Fourier peaks should not be interpreted as missing atoms.
with2.3. Raman spectroscopy
Laser stimulated Raman spectra were measured using a portable B&WTek i-Raman Plus spectrometer equipped with a 532 nm laser (Pmax = 37 mW at the probe tip) that records spectra over the range 168–4002 cm−1 with a resolution of ∼ 3 cm−1. Measurements were carried out on large single crystals of ammonium carbonate monohydrate in our cold room using the BC100 fibre-optic coupled Raman probe. Background noise was minimized by acquisition of multiple integrations, each of 30 to 50 s (at 50% laser power, 18 mW), the time per integration being limited by detector saturation. At 263 K spectra were integrated for a total of 600 s. Measurements made with the crystal at dry ice temperatures (195 K) or at liquid nitrogen temperatures (77 K) were integrated for 500 and 100 s, respectively.
2.4. Computational methods
In order to confirm the veracity of our structure solution, and to aid in interpretation of the Raman spectrum, we carried out a first-principles calculation using density functional theory (DFT; Hohenberg & Kohn, 1964; Kohn & Sham, 1965), as implemented in the Vienna Ab initio Simulation Package, VASP (Kresse & Furthmüller, 1996). The plane-wave expansion was treated using the projected augmented-wave method, PAW (Blöchl, 1994); with the PAW potentials generated by Kresse & Joubert (1999) and distributed with VASP. The exchange-correlation was accommodated using the PBE generalized gradient corrected functional (Perdew et al., 1996, 1997). This form of the generalized gradient approximation (GGA) has been demonstrated to yield results of comparable accuracy to higher-level quantum chemical methods, such as MP2 and coupled-cluster methods, in hydrogen-bonded systems (e.g. Ireta et al., 2004), despite not correctly representing dispersion forces.
Convergence tests were carried out to optimize the k-point sampling of the within the Monkhorst–Pack scheme (Monkhorst & Pack, 1976) and the cut-off of the plane-wave basis set. It was found that a 2 × 5 × 2 k-point grid combined with a cut-off of 944 eV yielded a total-energy convergence better than 10−3 eV per atom and pressure converged better than 0.2 GPa. A structural relaxation under zero-pressure athermal conditions was carried out, starting from the experimental obtained at 10 K, in which the ions were allowed to move according to the calculated Hellman–Feynman forces and the unit-cell shape was allowed to vary. The relaxation was stopped when the forces on each atoms were less than 5 × 10−4 eV Å−1 and each component of the stress tensor was smaller than 0.05 GPa. The phonon spectrum was then computed using the small displacement method as implemented in the PHON code (Alfè, 2009). The construction of the full force-constant matrix requires knowledge of the force-field induced by displacing each atoms in the in the three Cartesian directions. Since there are 68 atoms in the the total number of required displacements for this system would then be 408 (allowing for both positive and negative displacements), although this can be reduced to 84 by exploiting the symmetry elements present in the crystal. We used displacements of 0.01 Å, which are sufficiently small to obtain phonon frequencies that are converged to better than 0.1%. Since, in this instance, we are interested only in the normal modes at the (BZ) centre, all of the required information could be obtained by computing the force matrix for the primitive However, in order to check the mechanical stability of the compound we also computed the force constant matrix using a 2 × 5 × 2 which is large enough to provide fully converged phonon frequencies in the whole BZ, and we found no imaginary phonon branches.
The resulting modes at the BZ centre were classified according to the irreducible species of D2h; this was done using standard group theory techniques with the help of the program SAM (Kroumova et al., 2003), available at the Bilbao crystallographic server (Aroyo et al., 2006).
3. Results and discussion
3.1. Description of the structure and bonding
Fig. 4 depicts the with atoms labelled according to the scheme employed in all subsequent figures and tables. In addition to the tabulated data presented here, we have deposited supplementary CIFs containing all structure factors (hkl), output (SHELX RES) and interatomic distances and angles.1 The results of the athermal zero-pressure DFT structural relaxation are in close agreement with the observed structure (see and Table S1 in the supporting information).
The CO32− anions have trigonal planar symmetry (point group D3h) within experimental error and lie in planes perpendicular to the b-axis at y = 0.25 and 0.75. Each of the carbonate O atoms accepts three hydrogen bonds, one each in the plane of the anion and two out-of-plane. The in-plane hydrogen bonds are donated exclusively by neighbouring ammonium cations, two from the N(1)H4+ unit, which form chains of NH4+—CO32−—NH4+ extending along the a-axis (Figs. 3 and 5), and one from the N(2)H4+ unit. For O1 and O3, the out-of-plane hydrogen bonds are donated by NH4+ tetrahedra in adjacent planes, whereas O2 accepts hydrogen bonds from the water molecule in adjacent planes. The in-plane hydrogen bonds from N(1)H4+ cations that form the a-axis chains are significantly shorter (mean = 1.748 Å) than the other in- and out-of-plane hydrogen bonds (mean = 1.809 Å). As shown in Fig. 6, chains in adjacent sheets are related to one another by the 21 along b, the result being a fully three-dimensional hydrogen-bonded framework, albeit with a strongly layered character. Note that the crystals (Fig. 2) are elongated in the direction of these strongly hydrogen-bonded chains and the layering is parallel to the broad (0 1 0) faces.
The only substantial difference between the experimental and computational structures is in the length and linearity of the hydrogen bonds donated by and accepted by the water molecule. In the DFT relaxation, the hydrogen bond accepted from N(2)H4+ is approximately 4.5% shorter and ∼ 5° straighter than is observed in the experimental data. The hydrogen bond donated from H2O to the O2 carbonate oxygen is ∼ 1.8% shorter than we see experimentally; this bond is already almost perfectly linear in both the computational and experimental data. Note that the other calculated hydrogen-bond lengths are just a few tenths of a percent different from the single-crystal structure refinements, differences that have little or no statistical significance. See Tables 2–4.
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The carbonate ions are entirely unremarkable, having nearly identical C—O bond lengths to those found by single-crystal methods in a large number of other inorganic carbonate minerals (Zemann, 1981; Hesse et al., 1983; Chevrier et al., 1992; Maslen et al., 1995; Giester et al., 2000) and in ammonium sesquicarbonate monohydrate (Margraf et al., 2003).
By contrast, there are fewer examples of accurate N—H bond lengths for ammonium ions in the literature obtained by single-crystal neutron diffraction methods. Moreover, these ions appear to be more susceptible than the carbonate ion to variations in bond length depending on the coordination environment (Brown, 1995; Demaison et al., 2000). Table 5 lists a number of experimental and computational values for the N—H (or N—D) bond length of the ammonium ion in the gas phase, in clusters and in crystals (for which we report only single-crystal neutron diffraction data).
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The equilibrium N—H bond length for the gas phase NH4+ ion has been determined spectroscopically to be 1.029 Å (Crofton & Oka, 1987), and many of the crystallographic values fall around this value; indeed the mean of all values listed in Table 5 is 1.026 Å. One would expect the N—H contact to increase in length on formation of hydrogen bonds, and there is some computational support for this; Jiang et al. (1999) reported a small increase in r(N—H) on formation of hydrogen-bonded clusters with water, and in our own earlier work (Fortes et al., 2001) we found that r(N—H) increased from 1.055 Å in the free ion to 1.063 Å in the hydrogen-bonded NH4OH crystal. Nonetheless, we still see long N—H bonds (> 1.05 Å) even in weakly hydrogen-bonded crystals, such as ammonium perchlorate (Choi et al., 1974), where the ammonium ions have a very low energy barrier to ∼ 2 kJ mol−1 (Johnson, 1988; Trefler & Wilkinson, 1969; Westrum & Justice, 1969).
A more accurate picture of the covalent N—H bond in the ammonium ion may be obtained instead by analysis of the electron density generated by DFT calculations. Fig. 3(b) depicts a slice through the crystal in the plane of the N1—H2, N1—H3, N2—H5 and N2—H6 bonds. The properties of these bonds are described by the topology of the electron density according to Bader's quantum theory of atoms in molecules, QTAIM (Bader, 1990). Of interest to us are the saddle points where the gradient in the electron density, ∇ρ(r), vanishes; these are known as bond critical points (BCPs). Important metrics of the bond strength and character are the electron density at the BCP, ρ(rBCP), and the Laplacian of the electron density at the BCP, ∇2ρ(rBCP), which itself represents the 3 × 3 Hessian matrix of second partial derivatives of the electron density with respect to the coordinates. The eigenvalues of this matrix, λ1, λ2 and λ3 (which sum to ∇2ρ) are the principal axes of `curvature' of the electron density perpendicular to the bond (λ1, λ2) and along the bond (λ3). At the bond critical points these eigenvalues have different signs, which may lead (particularly for weak bonds, as we will see later) to Laplacians with small values and comparatively large uncertainties. Indeed it has been shown by Espinosa et al. (1999) that the curvature along the bond, λ3, provides the clearest indicator of bond strength. Nonetheless, the Laplacian is still a widely reported quantity; a negative Laplacian at the bond generally corresponds to a concentration of electron density, which is characteristic of a whereas ionic bonds and hydrogen bonds have a positive Laplacian, indicative of a depletion in electron density.
We have used the program AIM-UC (Vega & Almeida, 2014) to compute the properties of the electron density at the N—H bond critical points in ammonium carbonate monohydrate (Table 6). For comparison we have reproduced some experimental and computational electron density metrics from other revealing some interesting differences. Note that the density at the BCP is broadly similar for all compounds, but the Laplacians range from approximately −10 e Å−5 (NH4F) to −50 e Å−5 (this work). Between the four literature examples (all with N—H bond lengths of ∼ 1.030 Å), much of the difference lies in the value of λ1 and λ2; however, for ammonium carbonate monohydrate the greatest difference is in λ3, which has a value of ∼ 10 e Å−5, relative to 20–30 e Å−5 in the other materials. It is intriguing that such significant differences in charge distribution should exist within otherwise similar ionic entities.
‡Mebs et al. (2013) – λ1 and λ2 estimated from the quoted bond ellipticity [∊ = λ1/ λ2) − 1] and the Laplacian. §Stash et al. (2013). |
Of the two symmetry-inequivalent NH4+ cations only the N2 unit bonds with the water molecule, although this appears to have little effect on either the N—H or the H⋯O bond between the ammonium ion and the water molecule compared with any other interatomic contact. The water molecules themselves are, however, somewhat unusual in being trigonally coordinated rather than tetrahedrally coordinated as one might expect, accepting just a single hydrogen bond from the H5 atom. However, this is not unprecedented; a similar arrangement occurs in a number of inorganic hydrates, such as ammonia dihydrate (Loveday & Nelmes, 2000; Fortes et al., 2003).
Following the example outlined above for the ammonium ion, we can also use the QTAIM methodology to characterize the hydrogen-bond network that holds together each of the material's molecular and ionic building blocks. Based solely on the H⋯O distances and N—H⋯O angles, it is clear that ammonium carbonate monohydrate is relatively unusual amongst AIM-UC to obtain the coordinates and topological properties of the bond critical points relating to the hydrogen bonds and these are listed in Table 7. There are well known correlations between interatomic distances and the electron density metrics (particularly λ3), and our results are in good agreement with previous experimental and computational values (Espinosa et al., 1999; Tang et al., 2006).
in having quite strong hydrogen bonds donated by the ammonium ion. The effect of this on the vibrational frequencies is also quite clear as described in the following section. As before, we used
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The cf. Vener et al., 2012). The total energy density is the sum of the local kinetic and potential electronic energies, G(r) and V(r), respectively, at the BCP (Bader & Beddall, 1972)
of the hydrogen bond may be estimated accurately from vibrational frequencies and with varying degrees of accuracy from the electron density (where the via the local form of the virial theorem (Bader, 1990)
is related to the Laplacian of the electron density is obtained by partitioning of the electron density (Espinosa et al. (1998) proposed that the hydrogen-bond energy, EHB, could be obtained simply from the density
and this expression continues to be used widely, whereas Mata et al. (2011) subsequently suggested that a more accurate value could be found from the density
A subsequent analysis by Vener et al. (2012) found that equation (4) systematically overestimates EHB compared with the spectroscopically determined hydrogen-bond energies. However, the value given by equation (5) appears to yield reasonably accurate values of EHB. In Table 8 we detail EHB as calculated using equations (4) and (5). Furthermore, we give a `corrected' value of EHB based on equation (4) and the tabulated results in Vener et al. (2012) such that EHB(corrected) = 0.465EHB + 16.58. The mean values of EHB in the right-hand column thus represent our most accurate determination of the hydrogen-bond in this compound.
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The arrangement of the ions in ammonium carbonate monohydrate differs in a number of important ways from related structures. As noted above, the structure consists of chains of alternating hydrogen-bonded cations and anions; i.e. the ions are co-planar in the plane of the carbonate ion and it is this co-planarity that is unusual. In the structures of ammonium sesquicarbonate monohydrate (Margraf et al., 2003) and ammonium bicarbonate (Pertlik, 1981; Zhang, 1984) the anions are also arranged into chains (Fig. 7), but these are hydrogen bonded by water molecules and/or the O—H moiety of the bicarbonate ion. Unlike ammonium carbonate monohydrate, the cations in these two structures are situated between the planes of carbonate anions.
There are comparatively few other structures with which to form a direct comparison of the title compound. Of the alkali metals for which the ammonium ion most commonly substitutes, Li, Rb and Cs form poorly soluble carbonates and no hydrates are known (Dinnebier et al., 2005); potassium is known only to form a sesquihydrate, K2CO3·3/2H2O (Skakle et al., 2001). Conversely, Na2CO3 is highly soluble in water and can crystallize as a decahydrate (the mineral natron), a heptahydrate and a monohydrate (Wu & Brown, 1975).
Due to the much smaller ionic radius of Na+ relative to NH4+ the structure of sodium carbonate monohydrate differs in some important respects from that of ammonium carbonate monohydrate. In Na2CO3·H2O (space group Pca21) there are perfectly trigonal CO3 anions lying in planes perpendicular to the crystal's a-axis at x = 0.25 and 0.75. Where this structure differs from the ammonium analogue is that carbonate anions in adjacent sheets lie directly above one another (rather than being offset by half a unit cell) to form closely packed `columns' of CO3 along the a-axis. The structure also differs in having both the cations and the water molecule lying in discrete sheets between the CO3 planes, much like ammonium sesquicarbonate and bicarbonate. The higher-density packing results in the helical structure shown in Fig. 8, linked together by water molecules in distorted tetrahedral coordination; by comparison, the ammonium carbonate crystal has simple zigzag chains linked by trigonally coordinated water molecules donating almost perfectly linear hydrogen bonds.
Amongst other possible analogues, ammonium nitrate and ammonium chlorate have no known hydrates: ammonium sulfite occurs as a monohydrate but this structure is characterized by non-planar (and non-co-planar) SO3 anions (Battelle & Trueblood, 1965) and so there is little to be gained by discussing this further. Only two other compounds are of any possible interest, these being ammonium carbonate peroxide (Medvedev et al., 2012) and ammonium oxalate monohydrate (Robertson, 1965; Taylor & Sabine, 1972). In both of these compounds the (roughly) planar anions are linked in-plane by water or hydrogen peroxide rather than the ammonium cations. In summary, there are no obvious structural analogues amongst any plausible related compounds and the occurrence of co-planar anions and cations in these types of structures seems to be uncommon.
3.2. Vibrational spectra
Ammonium carbonate monohydrate crystallizes in the centrosymmetric Pnma having a with D2h point-group symmetry and four formula units per all ions and molecules are located on sites of CS [σ(xz)] symmetry. Based on a consideration of the normal vibrational modes of the free ammonium and carbonate ions and the neutral water molecule, we have carried out a analysis by the correlation method to determine the symmetry species of all Raman-active modes. Allowing for the modes corresponding to translation of the entire crystal (2A′ + A″), we find that there are 102 normal modes summarized as Γopt(Raman) = 31Ag + 20B1g + 31B2g + 20B3g. The DFT-calculated frequencies of these 102 normal modes are shown in relation to the observed Raman spectrum in Fig. 9.
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The Raman spectrum is dominated by strong symmetric stretching modes from the carbonate ion (split into a strong Ag symmetry peak at 1074 cm−1 and a weaker B2g symmetry peak at 1056 cm−1), from the ammonium ions (2889 cm−1) and from the water molecule (3297 cm−1). These are in good agreement with the calculated frequencies, 1044.5, 1008.3, 2920 (average) and 3343 (average) cm−1, respectively.
Moderately strong Raman peaks occur in the low-frequency range, between 218 and 280 cm−1, which are due to translational motions of the ammonium ions, and in the high-frequency range (2600–3000 cm−1) due to the asymmetric N—H stretch of NH4+. The latter are divided into motions in the crystal's mirror plane (on the low-frequency side of ν1 NH4+) and motions out of the mirror plane (on the high-frequency side of ν1 NH4+). Amongst these modes, peaks due to the N(1)H4+ tetrahedron occur at lower frequency than those due to N(2)H4+, which is likely to reflect the influence of the shorter (i.e. stronger) hydrogen bonds donated by N(1)H4+ (see, for example, Tables 4 and 8). Fig. 10 illustrates a deconvolution of the high-frequency portion of the spectrum into separate Lorentzian contributions.
In the range 1300–1850 cm−1 (Fig. 11) we observe the asymmetric stretch of the carbonate ion, split into Ag and B2g peaks at 1385 and 1424 cm−1, the asymmetric deformation of the NH4+ ion between 1475 and 1555 cm−1, and the symmetric deformation of the NH4+ ions (scissor and twist modes) from around 1696 to 1769 cm−1. The symmetric bending mode of the water molecule is sometimes observed as a very weak feature near 1650 cm−1 [ν2(Ag) at 1637.7 cm−1 and ν2(B2g) at 1636.8 cm−1 according to our DFT calculations], but this seems to be absent in our measured spectra. It is conceivable that the peak at 1696.1 cm−1 is due to this vibrational mode, but the arguments concerning combination bands made below suggest that this is not the case.
Between 300 and 1000 cm−1 there are some weak features, the first (from ∼ 507 to 608 cm−1) being due to librational motion of the NH4+ ions. A doublet at 687.6 and 709.2 cm−1 is attributable to asymmetric bending of the carbonate ion, whilst the peak at 745 cm−1 is probably due to libration of the water molecules.
The frequencies of normal modes attributed to the carbonate ion are in excellent agreement with literature data for numerous other carbonate compounds (e.g. Buzgar & Apopei, 2009). However, the positions of the NH4+ stretching modes are substantially red-shifted, and those of the bending modes substantially blue-shifted, from the observed vibrational frequencies of the free ion and of ammonium in weakly hydrogen-bonded solids (see Brown, 1995, and references therein). The pattern of shifts is further evidence of the relatively strong hydrogen bonding of the ammonium ion. Indeed the observed vibrational frequencies are similar to those observed in one of most strongly hydrogen-bonded ammonium salts, NH4F (Plumb & Hornig, 1955).
Further observational support for strong hydrogen bonding of the ammonium ion (in addition to the electron-density analysis in the previous section) is the occurrence of bands around 2000 and 2200 cm−1 due to the combination of NH4+ bending modes (ν2 and ν4) with the librational modes (ν6). Their presence is strongly supportive of rotational hindrance caused by hydrogen bonding. Since the strongest NH4+ librational peak is at 507 cm−1, we have simply red-shifted the combination bands by a uniform 500 cm−1 in Fig. 12 in order to compare their structure with the ν2 and ν4 regions. Note the occurrence of the 1696 cm−1 peak in the combination bands, suggesting that it is due to ammonium rather than water. Finally, the frequency of the ammonium librational mode is much higher than in many other ammonium salts; using the empirical relationship of Sato (1965) we use the observed librational frequency to derive a barrier to of 36 kJ mol−1. Not only is this large (cf. Johnson, 1988), being comparable to NH4F (44 kJ mol−1), but it is strikingly similar to the mean hydrogen-bond energy reported at the bottom of Table 8.
Inelastic neutron spectra of `ammonium carbonate' were measured at 293 K by Myers et al. (1967); they determined the frequencies of the translational and torsional modes as, respectively, 205 ± 7 and 445 ± 10 cm−1. Whilst it is unlikely that the material was ammonium carbonate monohydrate in the form studied by us, their work does note that the frequency ratio of the two modes for a number of ammonium salts lies between 1.99 and 2.38, which is in good agreement with our observations.
3.3. and decomposition
Since we have collected crystallographic data at several temperatures (albeit on different instruments using different methods) we are in a position to make some initial remarks concerning the magnitude and anisotropy of the gives the unit-cell parameters at 10 and 100 K determined from the single-crystal neutron experiment, and at 245 K as determined by powder X-ray diffraction.
and the behaviour of the material on warming above 273 K. A more detailed experimental study of these phenomena is planned. Table 10
|
These data are illustrated in Fig. 13, which includes a qualitative representation of the anisotropic in the form of dashed lines, effectively no more than a visual guide. Both the a-axis and the b-axis of the crystal expand normally on warming (although the b-axis may exhibit a small amount of negative expansion below 100 K), whereas the c-axis contracts. Estimates of the thermal expansivities along the three orthogonal directions at 245 K are αa = αb ≃ 80 × 10−6 K−1 and αc ≃ −1 × 10−6 K−1, resulting in a volume of approximately 160 × 10−6 K−1. In other words, upon warming the crystal experiences the greatest expansion parallel to the chains drawn in Fig. 5 whilst undergoing a small degree of contraction perpendicular to those chains. The volume coefficient of is similar to that of water ice Ih at the same temperature (Röttger et al., 1994).
X-ray powder diffraction data reveal that ammonium carbonate monohydrate begins to transform to ammonium sesquicarbonate monohydrate at around 273 K; this transformation is complete in under an hour at 291 K. After being left in air at 299 K for 2 h, we found that crushed single crystals of ammonium carbonate monohydrate had transformed completely to ammonium bicarbonate.
4. Summary
We have determined the 4+ and CO32−. This moderately strong hydrogen bonding results in a barrier to of the ammonium ion second only to ammonium fluoride. The structural architecture is manifested in highly anisotropic linear coefficients, including a negative expansivity along the c-axis of the crystal. Undoubtedly the material will exhibit a large elastic anisotropy, like the similarly layered ammonium oxalate monohydrate (Küppers, 1972) and we predict that the a-axis will prove to be the most compressible direction in the crystal whilst the c-axis will be the least compressible.
of ammonium carbonate monohydrate, a substance that we find to be stable in air only at temperatures below 273 K, explaining why this otherwise ubiquitous laboratory reagent has been consistently misidentified over the decades. Unlike the related sesquicarbonate and bicarbonate of ammonia, the `normal' carbonate consists of co-planar chains of strongly hydrogen-bonded NHSupporting information
https://doi.org/10.1107/S205252061402126X/eb5035sup1.cif
contains datablocks I, II. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S205252061402126X/eb5035Isup2.hkl
Structure factors: contains datablock II. DOI: https://doi.org/10.1107/S205252061402126X/eb5035IIsup3.hkl
Supporting information file. DOI: https://doi.org/10.1107/S205252061402126X/eb5035Isup4.cml
Extra table. DOI: https://doi.org/10.1107/S205252061402126X/eb5035sup5.pdf
For both compounds, data collection: SXD2001 (Gutmann, 2005); cell
SXD2001 (Gutmann, 2005); data reduction: SXD2001 (Gutmann, 2005); program(s) used to solve structure: SHELXS2014 (Gruene et al., 2014); program(s) used to refine structure: SHELXL2014 (Gruene et al., 2014); molecular graphics: DIAMOND (Putz and Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).CO3·H2O·2(H4N) | Dx = 1.282 Mg m−3 |
Mr = 114.11 | Melting point: 273 K |
Orthorhombic, Pnma | Neutron radiation, λ = 0.48-7.0 Å |
a = 12.047 (3) Å | Cell parameters from 550 reflections |
b = 4.4525 (11) Å | µ = 0.00 mm−1 |
c = 11.023 (3) Å | T = 10 K |
V = 591.3 (3) Å3 | Cuboid, colorless |
Z = 4 | 4.00 × 4.00 × 4.00 mm |
F(000) = 248 |
SXD diffractometer | 12888 reflections with I > 2σ(I) |
Radiation source: ISIS neutron spallation source | θmax = 86.6°, θmin = 0.001° |
Detector resolution: 0 pixels mm-1 | h = −29→30 |
time–of–flight LAUE diffraction scans | k = −12→13 |
12888 measured reflections | l = −31→33 |
2773 independent reflections |
Refinement on F2 | Hydrogen site location: difference Fourier map |
Least-squares matrix: full | All H-atom parameters refined |
R[F2 > 2σ(F2)] = 0.091 | w = 1/[σ2(Fo2) + (0.1992P)2 + 13.7328P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.259 | (Δ/σ)max < 0.001 |
S = 1.08 | Δρmax = 4.02 e Å−3 |
12888 reflections | Δρmin = −5.60 e Å−3 |
104 parameters | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
0 restraints | Extinction coefficient: 0.048 (3) |
Primary atom site location: structure-invariant direct methods |
Experimental. For peak integration a local UB matrix refined for each frame, using approximately 50 reflections from each of the 11 detectors. Hence _cell_measurement_reflns_used 550 For final cell dimensions a weighted average of all local cells was calculated Because of the nature of the experiment, it is not possible to give values of theta_min and theta_max for the cell determination. The same applies for the wavelength used for the experiment. The range of wavelengths used was 0.48–7.0 Angstroms, BUT the bulk of the diffraction information is obtained from wavelengths in the range 0.7–2.5 Angstroms. The data collection procedures on the SXD instrument used for the single-crystal neutron data collection are most recently summarized in the Appendix to the following paper Wilson, C·C. (1997). J. Mol. Struct. 405, 207–217 |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. The variable wavelength nature of the data collection procedure means that sensible values of _diffrn_reflns_theta_min & _diffrn_reflns_theta_max cannot be given instead the following limits are given _diffrn_reflns_sin(theta)/lambda_min 0.06 _diffrn_reflns_sin(theta)/lambda_max 1.38 _refine_diff_density_max/min is given in Fermi per per angstrom cubed not electons per angstrom cubed. Another way to consider the _refine_diff_density_ is as a percentage of the scattering density of a given atom: _refine_diff_density_max = 1.0% of nitrogen _refine_diff_density_min = -1.3% of nitrogen Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. For comparison, the calculated R-factor based on F is 0.0742 for the 2773 unique reflections obtained after merging to generate the Fourier map. |
x | y | z | Uiso*/Ueq | ||
N1 | 0.09626 (13) | 0.7500 | 0.12203 (11) | 0.0051 (2) | |
N2 | 0.12955 (13) | 0.7500 | 0.64128 (10) | 0.00504 (18) | |
C1 | 0.30005 (17) | 0.7500 | 0.38127 (13) | 0.0024 (2) | |
O1 | 0.3777 (2) | 0.7500 | 0.30111 (16) | 0.0044 (3) | |
O2 | 0.1975 (2) | 0.7500 | 0.34845 (16) | 0.0046 (3) | |
O3 | 0.3244 (2) | 0.7500 | 0.49515 (15) | 0.0041 (3) | |
OW1 | 0.0912 (2) | 0.2500 | 0.44683 (19) | 0.0065 (3) | |
H1 | 0.1174 (4) | 0.5610 (7) | 0.0716 (3) | 0.0185 (7) | |
H2 | 0.0109 (5) | 0.7500 | 0.1424 (5) | 0.0177 (8) | |
H3 | 0.1414 (6) | 0.7500 | 0.2030 (4) | 0.0175 (9) | |
H4 | 0.1331 (4) | 0.5591 (7) | 0.6954 (3) | 0.0181 (6) | |
H5 | 0.0534 (5) | 0.7500 | 0.5965 (5) | 0.0180 (8) | |
H6 | 0.1952 (5) | 0.7500 | 0.5796 (5) | 0.0178 (8) | |
H7 | 0.1281 (4) | 0.4250 (7) | 0.4122 (4) | 0.0193 (6) |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0053 (6) | 0.0052 (3) | 0.0049 (3) | 0.000 | 0.0001 (3) | 0.000 |
N2 | 0.0054 (5) | 0.0051 (3) | 0.0046 (3) | 0.000 | 0.0001 (3) | 0.000 |
C1 | 0.0026 (6) | 0.0023 (3) | 0.0023 (3) | 0.000 | −0.0004 (4) | 0.000 |
O1 | 0.0036 (8) | 0.0059 (5) | 0.0036 (4) | 0.000 | 0.0012 (5) | 0.000 |
O2 | 0.0034 (8) | 0.0064 (5) | 0.0040 (5) | 0.000 | −0.0006 (5) | 0.000 |
O3 | 0.0047 (8) | 0.0055 (4) | 0.0023 (4) | 0.000 | −0.0004 (5) | 0.000 |
OW1 | 0.0056 (9) | 0.0052 (5) | 0.0086 (6) | 0.000 | 0.0011 (6) | 0.000 |
H1 | 0.022 (2) | 0.0147 (10) | 0.0184 (11) | 0.0029 (11) | 0.0019 (12) | −0.0045 (9) |
H2 | 0.014 (2) | 0.0196 (16) | 0.0200 (18) | 0.000 | 0.0025 (17) | 0.000 |
H3 | 0.019 (3) | 0.0211 (17) | 0.0129 (14) | 0.000 | −0.0047 (15) | 0.000 |
H4 | 0.0204 (19) | 0.0149 (10) | 0.0190 (12) | 0.0010 (11) | 0.0004 (12) | 0.0055 (9) |
H5 | 0.012 (2) | 0.0214 (17) | 0.0205 (18) | 0.000 | −0.0054 (17) | 0.000 |
H6 | 0.016 (2) | 0.0201 (16) | 0.0176 (16) | 0.000 | 0.0063 (16) | 0.000 |
H7 | 0.0207 (19) | 0.0137 (10) | 0.0236 (13) | −0.0042 (11) | 0.0028 (13) | 0.0032 (9) |
N1—H1 | 1.040 (3) | N2—H5 | 1.041 (6) |
N1—H1i | 1.040 (3) | C1—O2 | 1.287 (3) |
N1—H3 | 1.045 (5) | C1—O1 | 1.287 (3) |
N1—H2 | 1.053 (6) | C1—O3 | 1.289 (2) |
N2—H4 | 1.040 (3) | OW1—H7 | 0.975 (4) |
N2—H4i | 1.040 (3) | OW1—H7ii | 0.975 (4) |
N2—H6 | 1.043 (6) | ||
H1—N1—H1i | 108.0 (5) | H4i—N2—H6 | 110.1 (3) |
H1—N1—H3 | 109.2 (3) | H4—N2—H5 | 107.9 (3) |
H1i—N1—H3 | 109.2 (3) | H4i—N2—H5 | 107.9 (3) |
H1—N1—H2 | 110.7 (3) | H6—N2—H5 | 111.0 (5) |
H1i—N1—H2 | 110.7 (3) | O2—C1—O1 | 120.32 (17) |
H3—N1—H2 | 109.0 (5) | O2—C1—O3 | 119.49 (19) |
H4—N2—H4i | 109.7 (4) | O1—C1—O3 | 120.2 (2) |
H4—N2—H6 | 110.1 (3) | H7—OW1—H7ii | 106.2 (6) |
Symmetry codes: (i) x, −y+3/2, z; (ii) x, −y+1/2, z. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O3iii | 1.040 (3) | 1.766 (4) | 2.7973 (15) | 170.6 (4) |
N1—H2···O1iv | 1.05 (1) | 1.72 (1) | 2.766 (3) | 171 (1) |
N1—H3···O2 | 1.05 (1) | 1.74 (1) | 2.778 (2) | 172 (1) |
N2—H4···O1v | 1.040 (3) | 1.808 (3) | 2.8404 (14) | 171.7 (4) |
N2—H5···OW1vi | 1.04 (1) | 1.81 (1) | 2.831 (3) | 167 (1) |
N2—H6···O3 | 1.04 (1) | 1.81 (1) | 2.847 (3) | 170 (1) |
OW1—H7···O2 | 0.975 (4) | 1.813 (4) | 2.788 (2) | 179.6 (5) |
Symmetry codes: (iii) −x+1/2, −y+1, z−1/2; (iv) x−1/2, −y+3/2, −z+1/2; (v) −x+1/2, −y+1, z+1/2; (vi) −x, y+1/2, −z+1. |
CO3·H2O·2(H4N) | Dx = 1.282 Mg m−3 |
Mr = 114.11 | Melting point: 273 K |
Orthorhombic, Pnma | Neutron radiation, λ = 0.48-7.0 Å |
a = 12.056 (3) Å | Cell parameters from 550 reflections |
b = 4.4519 (11) Å | µ = 0.00 mm−1 |
c = 11.016 (3) Å | T = 100 K |
V = 591.2 (3) Å3 | Cuboid, colorless |
Z = 4 | 4.00 × 4.00 × 4.00 mm |
F(000) = 248 |
SXD diffractometer | 7209 reflections with I > 2σ(I) |
Radiation source: ISIS neutron spallation source | θmax = 85.4°, θmin = 0.002° |
Detector resolution: 0 pixels mm-1 | h = −32→31 |
time–of–flight LAUE diffraction scans | k = −12→10 |
7209 measured reflections | l = −27→26 |
1618 independent reflections |
Refinement on F2 | Hydrogen site location: difference Fourier map |
Least-squares matrix: full | All H-atom parameters refined |
R[F2 > 2σ(F2)] = 0.094 | w = 1/[σ2(Fo2) + (0.1933P)2 + 22.6698P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.266 | (Δ/σ)max < 0.001 |
S = 1.09 | Δρmax = 2.09 e Å−3 |
7209 reflections | Δρmin = −2.52 e Å−3 |
104 parameters | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
0 restraints | Extinction coefficient: 0.043 (3) |
Experimental. For peak integration a local UB matrix refined for each frame, using approximately 50 reflections from each of the 11 detectors. Hence _cell_measurement_reflns_used 550 For final cell dimensions a weighted average of all local cells was calculated Because of the nature of the experiment, it is not possible to give values of theta_min and theta_max for the cell determination. The same applies for the wavelength used for the experiment. The range of wavelengths used was 0.48–7.0 Angstroms, BUT the bulk of the diffraction information is obtained from wavelengths in the range 0.7–2.5 Angstroms. The data collection procedures on the SXD instrument used for the single-crystal neutron data collection are most recently summarized in the Appendix to the following paper Wilson, C·C. (1997). J. Mol. Struct. 405, 207–217 |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. The variable wavelength nature of the data collection procedure means that sensible values of _diffrn_reflns_theta_min & _diffrn_reflns_theta_max cannot be given instead the following limits are given _diffrn_reflns_sin(theta)/lambda_min 0.06 _diffrn_reflns_sin(theta)/lambda_max 1.38 _refine_diff_density_max/min is given in Fermi per per angstrom cubed not electons per angstrom cubed. Another way to consider the _refine_diff_density_ is as a percentage of the scattering density of a given atom: _refine_diff_density_max = 0.5% of nitrogen _refine_diff_density_min = -0.6% of nitrogen Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. For comparison, the calculated R-factor based on F is 0.0713 for the 1618 unique reflections obtained after merging to generate the Fourier map. |
x | y | z | Uiso*/Ueq | ||
N1 | 0.0962 (2) | 0.7500 | 0.12204 (19) | 0.0093 (4) | |
N2 | 0.1297 (2) | 0.7500 | 0.64189 (18) | 0.0092 (4) | |
C1 | 0.3001 (2) | 0.7500 | 0.3816 (2) | 0.0056 (4) | |
O1 | 0.3778 (3) | 0.7500 | 0.3015 (3) | 0.0093 (5) | |
O2 | 0.1982 (3) | 0.7500 | 0.3485 (3) | 0.0097 (5) | |
O3 | 0.3243 (3) | 0.7500 | 0.4955 (3) | 0.0087 (5) | |
OW1 | 0.0910 (4) | 0.2500 | 0.4457 (4) | 0.0128 (6) | |
H1 | 0.1177 (5) | 0.5614 (14) | 0.0715 (5) | 0.0219 (10) | |
H2 | 0.0109 (6) | 0.7500 | 0.1427 (7) | 0.0209 (13) | |
H3 | 0.1414 (7) | 0.7500 | 0.2033 (7) | 0.0208 (13) | |
H4 | 0.1333 (6) | 0.5599 (14) | 0.6961 (5) | 0.0232 (10) | |
H5 | 0.0536 (7) | 0.7500 | 0.5969 (8) | 0.0232 (14) | |
H6 | 0.1951 (7) | 0.7500 | 0.5805 (7) | 0.0225 (14) | |
H7 | 0.1284 (5) | 0.4240 (14) | 0.4116 (6) | 0.0239 (10) |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0089 (9) | 0.0110 (8) | 0.0081 (6) | 0.000 | 0.0003 (6) | 0.000 |
N2 | 0.0093 (8) | 0.0105 (8) | 0.0080 (6) | 0.000 | 0.0010 (5) | 0.000 |
C1 | 0.0060 (10) | 0.0062 (9) | 0.0046 (7) | 0.000 | −0.0002 (6) | 0.000 |
O1 | 0.0071 (12) | 0.0143 (14) | 0.0064 (9) | 0.000 | 0.0006 (9) | 0.000 |
O2 | 0.0058 (11) | 0.0144 (14) | 0.0088 (10) | 0.000 | −0.0015 (9) | 0.000 |
O3 | 0.0080 (13) | 0.0126 (14) | 0.0055 (9) | 0.000 | −0.0008 (8) | 0.000 |
OW1 | 0.0098 (15) | 0.0119 (14) | 0.0168 (13) | 0.000 | 0.0015 (12) | 0.000 |
H1 | 0.024 (3) | 0.021 (2) | 0.021 (2) | 0.0014 (19) | 0.0020 (16) | −0.0038 (17) |
H2 | 0.014 (3) | 0.027 (4) | 0.022 (3) | 0.000 | 0.000 (2) | 0.000 |
H3 | 0.020 (3) | 0.025 (3) | 0.017 (2) | 0.000 | −0.003 (2) | 0.000 |
H4 | 0.027 (3) | 0.022 (2) | 0.021 (2) | 0.001 (2) | 0.0003 (18) | 0.0068 (17) |
H5 | 0.019 (3) | 0.027 (4) | 0.024 (3) | 0.000 | −0.004 (3) | 0.000 |
H6 | 0.019 (3) | 0.029 (4) | 0.020 (3) | 0.000 | 0.009 (2) | 0.000 |
H7 | 0.022 (2) | 0.020 (2) | 0.030 (2) | −0.0047 (19) | 0.003 (2) | 0.0019 (18) |
N1—H1 | 1.040 (6) | N2—H5 | 1.043 (8) |
N1—H1i | 1.040 (6) | C1—O2 | 1.282 (5) |
N1—H3 | 1.048 (8) | C1—O1 | 1.286 (4) |
N1—H2 | 1.053 (8) | C1—O3 | 1.288 (4) |
N2—H4 | 1.037 (6) | OW1—H7 | 0.972 (6) |
N2—H4i | 1.037 (6) | OW1—H7ii | 0.972 (6) |
N2—H6 | 1.039 (8) | ||
H1—N1—H1i | 107.6 (7) | H4i—N2—H6 | 110.1 (5) |
H1—N1—H3 | 109.1 (4) | H4—N2—H5 | 108.1 (5) |
H1i—N1—H3 | 109.1 (4) | H4i—N2—H5 | 108.1 (5) |
H1—N1—H2 | 111.0 (4) | H6—N2—H5 | 111.0 (7) |
H1i—N1—H2 | 111.0 (4) | O2—C1—O1 | 120.2 (3) |
H3—N1—H2 | 108.9 (7) | O2—C1—O3 | 119.6 (3) |
H4—N2—H4i | 109.4 (7) | O1—C1—O3 | 120.3 (3) |
H4—N2—H6 | 110.1 (5) | H7—OW1—H7ii | 105.7 (9) |
Symmetry codes: (i) x, −y+3/2, z; (ii) x, −y+1/2, z. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O3iii | 1.040 (6) | 1.764 (6) | 2.796 (2) | 170.7 (6) |
N1—H2···O1iv | 1.05 (1) | 1.72 (1) | 2.765 (4) | 172 (1) |
N1—H3···O2 | 1.05 (1) | 1.74 (1) | 2.781 (4) | 172 (1) |
N2—H4···O1v | 1.037 (6) | 1.808 (6) | 2.838 (2) | 171.8 (6) |
N2—H5···OW1vi | 1.04 (1) | 1.81 (1) | 2.830 (5) | 167 (1) |
N2—H6···O3 | 1.04 (1) | 1.82 (1) | 2.846 (4) | 170 (1) |
OW1—H7···O2 | 0.972 (6) | 1.816 (6) | 2.788 (3) | 179.8 (7) |
Symmetry codes: (iii) −x+1/2, −y+1, z−1/2; (iv) x−1/2, −y+3/2, −z+1/2; (v) −x+1/2, −y+1, z+1/2; (vi) −x, y+1/2, −z+1. |
Acknowledgements
The authors thank the STFC ISIS facility for beamtime, and thank ISIS Technical Support staff for their invaluable assistance. We thank Lauren Milne for assistance with the photography of the grown crystals and collection of some Raman spectra. ADF acknowledges financial support from the UK Science and Technology Facilities Council (STFC), grant numbers PP/E006515/1 and ST/K000934/1, and from Birkbeck Department of Earth and Planetary Sciences for the purchase of our Raman spectrometer. ERH acknowledges support from the Spanish Research and Innovation Office through project No. FIS2012-31713.
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