metal-organic compounds
Transition metal complexes with pyrazole-based ligands. XIX. Diaquabis(3,5-dimethyl-1H-pyrazole-1-carboxamidine-κ2N,N′)metal(II) dinitrate, with metal = Co and Ni
aFaculty of Metallurgy and Technology, University of Montenegro, 81000 Podgorica, Serbia and Montenegro, bFaculty of Sciences, University of Novi Sad, Trg Dositeja Obradovica 3, 21000 Novi Sad, Serbia and Montenegro, and cDepartment of Chemistry, University of Durham, South Road, Durham DH1 3LE, England
*Correspondence e-mail: ivana.radosavljevic@durham.ac.uk
The two title isostructural and isomorphous complexes, [M(C6H10N4)2(H2O)2](NO3)2 (M is Co or Ni), contain the transition metal in a distorted octahedral geometry, coordinated by four N atoms of two neutral bidentate organic ligands in the equatorial plane and two water O atoms molecules in the axial positions. The cation is centrosymmetric, with the transition metal located on an inversion centre. The structures are stabilized by a three-dimensional network of hydrogen bonding.
Comment
Transition metal complexes with pyrazole-derived ligands exhibit interesting coordination chemistry and have attracted the research interest of numerous authors (Trofimenko, 1972, 1986, 1993, and references therein). These compounds find application in antipyretics and antirheumatics, in herbicides and fungicides, and also as metal ion extractants (Ding et al., 1994; Goslar et al., 1988). A more recent area of research activity has focused on the biocoordination chemistry of pyrazole and its macrocyclic derivatives (Bienvenue et al., 1995; Gupta et al., 1996).
We have synthesized and characterized a number of pyrazole-derived ligands and their metal complexes, with the aim of investigating the influence of the pyrazole ring substituents on complex formation (Jaćimović et al., 1999, 2003; Tomić et al., 2000; Mészáros Szécsényi et al., 2001, 2003). We report here the crystal structures of the isomorphous Co and Ni complexes of the ligand 3,5-dimethyl-1H-pyrazole-1-carboxamidine nitrate (Khudoyarov et al., 1995). The Co complex, (I), has been prepared for the first time, while the structure of the Ni analogue, (II), has been determined previously (Podder et al., 1986). However, the geometry and orientation of the water molecules in the previously reported structure were implausible. For example, the O—H bond lengths were 0.64 and 0.90 Å, the H—O—H bond angle was 96°, and the molecule was oriented in such a way that one of the H atoms was only 1.4 Å from the Ni centre. Clearly, such an incorrect model does not permit an accurate description of the hydrogen-bonding interactions, which play a significant role in the stability of this complex and which will be discussed below.
The asymmetric units of (I) and (II) contains half an [M(C6H10N4)2(H2O)2]2+ cation, located on an inversion centre, and an NO3− anion. The CoII and NiII cations are found in a distorted octahedral environment, coordinated to the ligand in the equatorial plane through pyrazole ring N atoms and the adjacent amidinium group N atoms. The coordination sphere is completed by two O atoms belonging to water molecules in axial positions (Fig. 1).
In (I), the equatorial bond lengths are Co—N2 = 2.0871 (8) Å and Co—N3 2.0842 (9) Å, and the ligand bite angle is 76.46 (3)°. The axial Co—O4 bond length is 2.1737 (7) Å. The corresponding parameters for (II) are 2.0474 (11) and 2.0552 (12) Å, 77.67 (4)°, and 2.1520 (10) Å. In both cases, the ligand ring system is essentially planar, with the amidinium group tilted relative to the substituted pyrazole ring by 3.7° in (I) and by 2.2° in (II). This is in contrast to the molecular structure of the ligand itself (Khudoyarov et al., 1995), where a significant departure from planarity exists, with the amidinium group twisted at an angle of 34° relative to the plane of the pyrazole ring. In the formation of complexes (I) and (II), the geometry of the ligand is adjusted to accommodate the coordination requirements of the transition metal.
Packing diagrams for the title complexes are shown in Fig. 2. The cations pack in such a way that molecules lying parallel form layers of alternating orientation. Layers of cations are separated by layers of nitrate anions. This arrangement gives rise to a system of hydrogen bonding involving the N atoms of the amino group and the water O atoms as donors, and the O atoms of the nitrate groups as acceptors. Two O atoms of a given nitrate group form hydrogen bonds to two cations in the layer above (with the amino group of one molecule and water in the other), while the third forms a bifurcated hydrogen bond to two cations in the layer below. The adjacent nitrate group forms the same number and types of hydrogen bonds, but in the opposite orientation, as shown in Fig. 2. Details of the hydrogen-bonding geometries for the two complexes are given in Tables 2 and 4. This three-dimensional pattern of hydrogen bonding imparts stability to the crystal structures of these two complexes.
Experimental
For the preparation of (I), an ethanol solution (5 ml) of Co(OAc)2·4H2O (0.06 g, 0.25 mmol) was added to an ethanol solution (5 ml) of the ligand 3,5-dimethylpyrazole-1-carboxamidine nitrate (0.1 g, 0.5 mmol) and the mixture was gently heated. After 48 h, orange crystals of (I) were filtered off and washed with ethanol (yield 0.18 g, 65%). Elemental analysis, found (calculated): C 28.89 (29.08), N 28.30 (28.27), H 4.96% (4.89%). For the preparation of (II), an ethanol solution (5 ml) of Ni(OAc)2·4H2O (0.06 g, 0.25 mmol) was added to an ethanol solution (5 ml) of the ligand 3,5-dimethylpyrazole-1-carboxamidine nitrate (0.1 g, 0.5 mmol) and the mixture was gently heated. After 60 h, purple crystals of (II) were filtered off and washed with ethanol (yield 0.18 g, 65%). Elemental analysis, found (calculated): C 28.93 (29.10), N 28.30 (28.29), H 4.96% (4.89%).
Compound (I)
Crystal data
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Refinement
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Compound (II)
Crystal data
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Refinement
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H atoms were located in difference Fourier maps and refined isotropically. Refined distance ranges are as follows: C—H = 0.91 (2)–0.99 (2) Å, N—H = 0.74 (2)–0.84 (2) Å and O—H = 0.76 (2)–0.85 (2) Å.
For both compounds, data collection: SMART (Bruker, 1999); cell SAINT (Bruker, 1999); data reduction: SAINT; program(s) used to solve structure: SIR92 (Altomare et al., 1994); program(s) used to refine structure: CRYSTALS (Betteridge et al., 2003); molecular graphics: ATOMS (Dowty, 2000); software used to prepare material for publication: CRYSTALS.
Supporting information
10.1107/S0108270104017433/bm1571sup1.cif
contains datablocks global, I, II. DOI:Structure factors: contains datablock I. DOI: 10.1107/S0108270104017433/bm1571Isup2.hkl
Structure factors: contains datablock II. DOI: 10.1107/S0108270104017433/bm1571IIsup3.hkl
For the preparation of (I), 5 ml of an ethanolic solution of Co(OAc)2.4 H2O (0.06 g, 0.25 mmol) was added to 5 ml of an ethanolic solution of the ligand 3,5-dimethylpyrazole-1-carboxamidine nitrate (0.1 g, 0.5 mmol) and the mixture was gently heated. After 48 h, orange crystals of (I) were filtered off and washed with ethanol (yield 0.08 g). Elemental analysis, found (calculated): C 28.89 (29.08), N 28.30 (28.27), H 4.96 (4.89)%. For the preparation of (II), 5 ml of an ethanolic solution of Ni(OAc)2.4 H2O (0.06 g, (0.25 mmol) was added to 5 ml of an ethanolic solution of the ligand 3,5-dimethylpyrazole-1-carboxamidine nitrate (0.1 g, 0.5 mmol) and the mixture was gently heated. After 60 h, purple crystals of (II) were filtered off and washed with ethanol (yield 0.18 g). Elemental analysis, found (calculated): C 28.93 (29.10), N 28.30 (28.29), H 4.96 (4.89)%.
H atoms were located in the difference Fourier maps and refined isotropically. Please give ranges for refined C—H, N—H and O—H bond distances.
For both compounds, data collection: SMART (Bruker, 1999); cell
SAINT (Bruker, 1999); data reduction: SAINT; program(s) used to solve structure: SIR92 (Altomare et al., 1994); program(s) used to refine structure: CRYSTALS (Betteridge et al., 2003); molecular graphics: ATOMS (Dowty, 2000); software used to prepare material for publication: CRYSTALS.Fig. 1. Views of the Co and Ni complexes, (I) and (II), repsectively, with their and atom-numbering schemes. The asymmetric unit consists of half a cation, with the metal on an inversion centre, and one nitrate anion. Displacement ellipsoids are shown at the 50% probability level. From the Coeditor: Please check the above text, and make sure you have sent in a copy of the ellipsoid plot for the Ni structure. | |
Fig. 2. Views of the packing and hydrogen-bonding schemes for (a) complex (I) and (b) complex (II). |
[Co(C6H10N4)2(H2O)2](NO3)2 | F(000) = 514 |
Mr = 495.32 | Dx = 1.660 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 7486 reflections |
a = 9.1067 (11) Å | θ = 5.2–61.7° |
b = 10.9344 (13) Å | µ = 0.93 mm−1 |
c = 10.4425 (13) Å | T = 120 K |
β = 107.602 (2)° | Rectangular prism, orange |
V = 991.1 (2) Å3 | 0.24 × 0.10 × 0.10 mm |
Z = 2 |
Bruker SMART CCD area-detector diffractometer | 2920 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.02 |
ω scans | θmax = 30.9°, θmin = 2.6° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −12→13 |
Tmin = 0.840, Tmax = 0.911 | k = −15→15 |
13055 measured reflections | l = −15→14 |
2975 independent reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Hydrogen site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.027 | All H-atom parameters refined |
wR(F2) = 0.062 | Method, part 1, Chebychev polynomial (Watkin, 1994; Prince, 1982), [weight] = 1/[A0T0(x) + A1T1(x) ··· + An-1Tn-1(x)], where Ai are the Chebychev coefficients listed below and x = F /Fmax Method = robust weighting (Prince, 1982), W = [weight] × [1-(ΔF/6σF)2]2. Ai are 1.62, 2.12 and 0.556 |
S = 0.98 | (Δ/σ)max = 0.001 |
2920 reflections | Δρmax = 0.44 e Å−3 |
190 parameters | Δρmin = −0.38 e Å−3 |
0 restraints |
[Co(C6H10N4)2(H2O)2](NO3)2 | V = 991.1 (2) Å3 |
Mr = 495.32 | Z = 2 |
Monoclinic, P21/n | Mo Kα radiation |
a = 9.1067 (11) Å | µ = 0.93 mm−1 |
b = 10.9344 (13) Å | T = 120 K |
c = 10.4425 (13) Å | 0.24 × 0.10 × 0.10 mm |
β = 107.602 (2)° |
Bruker SMART CCD area-detector diffractometer | 2975 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 2920 reflections with I > 2σ(I) |
Tmin = 0.840, Tmax = 0.911 | Rint = 0.02 |
13055 measured reflections |
R[F2 > 2σ(F2)] = 0.027 | 0 restraints |
wR(F2) = 0.062 | All H-atom parameters refined |
S = 0.98 | Δρmax = 0.44 e Å−3 |
2920 reflections | Δρmin = −0.38 e Å−3 |
190 parameters |
x | y | z | Uiso*/Ueq | ||
Co1 | 1.0000 | 0.5000 | 1.0000 | 0.0127 | |
N1 | 1.20636 (9) | 0.29222 (7) | 1.00939 (8) | 0.0146 | |
N2 | 1.05102 (8) | 0.31803 (7) | 0.97054 (8) | 0.0151 | |
N3 | 1.23936 (10) | 0.49253 (7) | 1.07683 (9) | 0.0161 | |
N4 | 1.45759 (10) | 0.37046 (9) | 1.09871 (9) | 0.0204 | |
N5 | 1.33613 (9) | 0.34672 (8) | 0.74332 (8) | 0.0171 | |
C1 | 1.30604 (10) | 0.39099 (9) | 1.06510 (9) | 0.0151 | |
C2 | 0.80811 (11) | 0.20551 (9) | 0.87785 (11) | 0.0206 | |
C3 | 0.97959 (10) | 0.21337 (8) | 0.92762 (9) | 0.0157 | |
C4 | 1.08791 (11) | 0.11904 (8) | 0.93680 (10) | 0.0178 | |
C5 | 1.23080 (11) | 0.17100 (8) | 0.98816 (9) | 0.0165 | |
C6 | 1.38285 (12) | 0.11031 (10) | 1.01281 (12) | 0.0231 | |
O1 | 1.23276 (9) | 0.27136 (8) | 0.69350 (9) | 0.0309 | |
O2 | 1.30401 (9) | 0.45101 (7) | 0.77817 (8) | 0.0219 | |
O3 | 1.47423 (9) | 0.31926 (8) | 0.75900 (9) | 0.0275 | |
O4 | 1.02884 (8) | 0.55437 (7) | 0.80883 (7) | 0.0183 | |
H1 | 1.297 (2) | 0.5397 (17) | 1.1074 (16) | 0.027 (4)* | |
H2 | 1.0670 (17) | 0.0377 (15) | 0.9125 (14) | 0.020 (3)* | |
H3 | 0.7762 (19) | 0.1272 (17) | 0.8487 (16) | 0.035 (4)* | |
H4 | 0.7637 (18) | 0.2253 (16) | 0.9478 (15) | 0.029 (4)* | |
H5 | 0.765 (2) | 0.2578 (16) | 0.8001 (17) | 0.032 (4)* | |
H6 | 1.362 (2) | 0.030 (2) | 0.9825 (19) | 0.041 (5)* | |
H7 | 1.4387 (19) | 0.1133 (16) | 1.1032 (16) | 0.029 (4)* | |
H8 | 1.4425 (19) | 0.1488 (15) | 0.9590 (15) | 0.027 (4)* | |
H9 | 1.4919 (19) | 0.2992 (18) | 1.1012 (16) | 0.034 (4)* | |
H10 | 1.514 (2) | 0.4268 (17) | 1.1324 (16) | 0.028 (4)* | |
H11 | 1.103 (2) | 0.5260 (18) | 0.8003 (18) | 0.035 (4)* | |
H12 | 1.037 (2) | 0.6309 (19) | 0.7992 (18) | 0.042 (5)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Co1 | 0.00943 (9) | 0.01169 (9) | 0.01636 (9) | 0.00113 (5) | 0.00285 (6) | −0.00073 (5) |
N1 | 0.0107 (3) | 0.0139 (3) | 0.0182 (3) | 0.0025 (3) | 0.0027 (2) | −0.0004 (3) |
N2 | 0.0092 (3) | 0.0150 (3) | 0.0201 (3) | 0.0017 (3) | 0.0030 (3) | −0.0015 (3) |
N3 | 0.0120 (4) | 0.0142 (3) | 0.0207 (4) | −0.0004 (3) | 0.0030 (3) | −0.0022 (3) |
N4 | 0.0109 (3) | 0.0188 (4) | 0.0287 (4) | 0.0027 (3) | 0.0018 (3) | −0.0028 (3) |
N5 | 0.0137 (3) | 0.0192 (4) | 0.0179 (3) | −0.0011 (3) | 0.0039 (3) | 0.0008 (3) |
C1 | 0.0125 (4) | 0.0167 (4) | 0.0153 (4) | 0.0000 (3) | 0.0029 (3) | −0.0003 (3) |
C2 | 0.0129 (4) | 0.0195 (4) | 0.0281 (4) | −0.0023 (3) | 0.0043 (3) | −0.0061 (4) |
C3 | 0.0140 (4) | 0.0148 (4) | 0.0182 (4) | −0.0001 (3) | 0.0048 (3) | −0.0010 (3) |
C4 | 0.0175 (4) | 0.0141 (4) | 0.0222 (4) | 0.0016 (3) | 0.0065 (3) | −0.0010 (3) |
C5 | 0.0160 (4) | 0.0146 (4) | 0.0188 (4) | 0.0036 (3) | 0.0052 (3) | 0.0006 (3) |
C6 | 0.0170 (4) | 0.0185 (4) | 0.0323 (5) | 0.0065 (3) | 0.0049 (4) | −0.0014 (4) |
O1 | 0.0190 (4) | 0.0276 (4) | 0.0434 (5) | −0.0085 (3) | 0.0052 (3) | −0.0082 (4) |
O2 | 0.0180 (3) | 0.0188 (3) | 0.0299 (4) | 0.0016 (3) | 0.0087 (3) | −0.0005 (3) |
O3 | 0.0131 (3) | 0.0275 (4) | 0.0416 (4) | 0.0013 (3) | 0.0078 (3) | −0.0087 (3) |
O4 | 0.0161 (3) | 0.0183 (3) | 0.0216 (3) | 0.0018 (3) | 0.0072 (2) | 0.0016 (2) |
Co1—N2 | 2.0871 (8) | N4—H10 | 0.809 (18) |
Co1—N3 | 2.0842 (9) | C2—C3 | 1.4918 (13) |
Co1—O4 | 2.1737 (7) | C2—H3 | 0.926 (18) |
N1—N2 | 1.3778 (10) | C2—H4 | 0.960 (16) |
N1—C1 | 1.4176 (12) | C2—H5 | 0.973 (17) |
N1—C5 | 1.3731 (12) | C3—C4 | 1.4104 (12) |
N2—C3 | 1.3256 (12) | C4—C5 | 1.3717 (13) |
N3—C1 | 1.2890 (12) | C4—H2 | 0.929 (16) |
N3—H1 | 0.734 (19) | C5—C6 | 1.4860 (13) |
N5—O1 | 1.2408 (11) | C6—H6 | 0.93 (2) |
N5—O2 | 1.2582 (11) | C6—H7 | 0.927 (16) |
N5—O3 | 1.2546 (11) | C6—H8 | 0.986 (16) |
N4—C1 | 1.3361 (12) | O4—H11 | 0.78 (2) |
N4—H9 | 0.837 (19) | O4—H12 | 0.85 (2) |
N2—Co1—N3 | 76.46 (3) | H3—C2—H4 | 107.2 (14) |
N2—Co1—O4 | 91.79 (3) | C3—C2—H5 | 111.8 (10) |
N3—Co1—O4 | 87.79 (3) | H3—C2—H5 | 105.2 (14) |
N2—N1—C1 | 115.97 (7) | H4—C2—H5 | 110.2 (14) |
N2—N1—C5 | 110.63 (7) | C2—C3—N2 | 121.50 (8) |
C1—N1—C5 | 133.37 (8) | C2—C3—C4 | 128.21 (8) |
Co1—N2—N1 | 113.98 (6) | N2—C3—C4 | 110.29 (8) |
Co1—N2—C3 | 139.86 (6) | C3—C4—C5 | 106.56 (8) |
N1—N2—C3 | 106.14 (7) | C3—C4—H2 | 126.9 (9) |
Co1—N3—C1 | 117.72 (7) | C5—C4—H2 | 126.5 (9) |
Co1—N3—H1 | 131.5 (14) | N1—C5—C4 | 106.38 (8) |
C1—N3—H1 | 110.7 (14) | N1—C5—C6 | 126.24 (9) |
O1—N5—O2 | 120.66 (8) | C4—C5—C6 | 127.36 (9) |
O1—N5—O3 | 119.95 (9) | C5—C6—H6 | 106.2 (12) |
O2—N5—O3 | 119.39 (8) | C5—C6—H7 | 110.9 (10) |
C1—N4—H9 | 120.7 (12) | H6—C6—H7 | 111.7 (15) |
C1—N4—H10 | 116.9 (12) | C5—C6—H8 | 110.8 (9) |
H9—N4—H10 | 120.9 (16) | H6—C6—H8 | 107.3 (15) |
N1—C1—N4 | 117.53 (8) | H7—C6—H8 | 109.8 (14) |
N1—C1—N3 | 115.70 (8) | Co1—O4—H11 | 110.4 (14) |
N4—C1—N3 | 126.77 (9) | Co1—O4—H12 | 114.7 (12) |
C3—C2—H3 | 111.1 (10) | H11—O4—H12 | 105.7 (18) |
C3—C2—H4 | 111.1 (9) |
D—H···A | D—H | H···A | D···A | D—H···A |
N4—H9···O1i | 0.84 (2) | 2.249 (18) | 2.8572 (13) | 129.7 (16) |
N4—H10···O2ii | 0.811 (18) | 2.114 (18) | 2.9136 (13) | 168.8 (18) |
O4—H11···O2 | 0.772 (19) | 2.081 (19) | 2.8539 (12) | 179.5 (14) |
O4—H12···O3iii | 0.85 (2) | 2.14 (2) | 2.9799 (12) | 169.6 (18) |
Symmetry codes: (i) x+1/2, −y+1/2, z+1/2; (ii) −x+3, −y+1, −z+2; (iii) −x+5/2, y+1/2, −z+3/2. |
[Ni(C6H10N4)2(H2O)2](NO3)2 | F(000) = 516 |
Mr = 495.10 | Dx = 1.669 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 6757 reflections |
a = 9.077 (3) Å | θ = 5.2–62.2° |
b = 10.866 (4) Å | µ = 1.05 mm−1 |
c = 10.456 (3) Å | T = 120 K |
β = 107.251 (15)° | Rectangular prism, purple |
V = 985.0 (6) Å3 | 0.20 × 0.20 × 0.12 mm |
Z = 2 |
Bruker SMART CCD area-detector diffractometer | 2617 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.02 |
ω scans | θmax = 31.1°, θmin = 2.6° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −12→12 |
Tmin = 0.803, Tmax = 0.881 | k = −15→15 |
13257 measured reflections | l = −14→14 |
2990 independent reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Hydrogen site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.026 | All H-atom parameters refined |
wR(F2) = 0.062 | Method, part 1, Chebychev polynomial (Watkin, 1994; Prince, 1982), [weight] = 1/[A0T0(x) + A1T1(x) ··· + An-1Tn-1(x)], where Ai are the Chebychev coefficients listed below and x = F /Fmax Method = robust weighting (Prince, 1982), W = [weight] × [1-(ΔF/6σF)2]2. Ai are: 1.85, 2.44 and 0.676 |
S = 0.98 | (Δ/σ)max = 0.001 |
2617 reflections | Δρmax = 0.47 e Å−3 |
190 parameters | Δρmin = −0.47 e Å−3 |
0 restraints |
[Ni(C6H10N4)2(H2O)2](NO3)2 | V = 985.0 (6) Å3 |
Mr = 495.10 | Z = 2 |
Monoclinic, P21/n | Mo Kα radiation |
a = 9.077 (3) Å | µ = 1.05 mm−1 |
b = 10.866 (4) Å | T = 120 K |
c = 10.456 (3) Å | 0.20 × 0.20 × 0.12 mm |
β = 107.251 (15)° |
Bruker SMART CCD area-detector diffractometer | 2990 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 2617 reflections with I > 2σ(I) |
Tmin = 0.803, Tmax = 0.881 | Rint = 0.02 |
13257 measured reflections |
R[F2 > 2σ(F2)] = 0.026 | 0 restraints |
wR(F2) = 0.062 | All H-atom parameters refined |
S = 0.98 | Δρmax = 0.47 e Å−3 |
2617 reflections | Δρmin = −0.47 e Å−3 |
190 parameters |
x | y | z | Uiso*/Ueq | ||
Ni1 | 1.0000 | 0.5000 | 1.0000 | 0.0117 | |
N1 | 1.20472 (10) | 0.29438 (8) | 1.00897 (9) | 0.0135 | |
N2 | 1.04915 (10) | 0.32015 (8) | 0.97087 (9) | 0.0138 | |
N3 | 1.23645 (11) | 0.49587 (8) | 1.07451 (10) | 0.0149 | |
N4 | 1.45618 (11) | 0.37327 (10) | 1.09870 (11) | 0.0190 | |
N5 | 1.33536 (10) | 0.34503 (9) | 0.74153 (9) | 0.0160 | |
C1 | 0.80616 (12) | 0.20587 (11) | 0.87690 (12) | 0.0195 | |
C2 | 1.30392 (11) | 0.39416 (10) | 1.06429 (10) | 0.0138 | |
C3 | 0.97774 (12) | 0.21492 (10) | 0.92694 (10) | 0.0148 | |
C4 | 1.08685 (13) | 0.12043 (10) | 0.93566 (11) | 0.0165 | |
C5 | 1.22977 (12) | 0.17245 (10) | 0.98690 (10) | 0.0151 | |
C6 | 1.38240 (13) | 0.11188 (11) | 1.01099 (13) | 0.0214 | |
O1 | 1.23263 (11) | 0.26895 (9) | 0.69137 (10) | 0.0288 | |
O2 | 1.30235 (10) | 0.44931 (8) | 0.77778 (9) | 0.0210 | |
O3 | 1.47384 (10) | 0.31817 (9) | 0.75619 (10) | 0.0262 | |
O4 | 1.02480 (9) | 0.55069 (8) | 0.80849 (8) | 0.0169 | |
H1 | 1.295 (2) | 0.544 (2) | 1.1051 (18) | 0.027 (4)* | |
H2 | 1.064 (2) | 0.0411 (19) | 0.9098 (16) | 0.024 (4)* | |
H3 | 0.760 (2) | 0.2269 (17) | 0.9444 (17) | 0.027 (4)* | |
H4 | 0.777 (2) | 0.1244 (19) | 0.8476 (18) | 0.035 (5)* | |
H5 | 0.767 (2) | 0.2570 (18) | 0.7992 (19) | 0.030 (4)* | |
H6 | 1.360 (2) | 0.031 (2) | 0.9824 (19) | 0.032 (5)* | |
H7 | 1.439 (2) | 0.1114 (17) | 1.1021 (18) | 0.028 (4)* | |
H8 | 1.444 (2) | 0.1498 (17) | 0.9580 (16) | 0.022 (4)* | |
H9 | 1.490 (2) | 0.302 (2) | 1.1036 (19) | 0.040 (5)* | |
H10 | 1.513 (2) | 0.4310 (18) | 1.1309 (17) | 0.024 (4)* | |
H11 | 1.035 (2) | 0.625 (2) | 0.799 (2) | 0.041 (5)* | |
H12 | 1.099 (2) | 0.524 (2) | 0.800 (2) | 0.030 (5)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Ni1 | 0.00923 (9) | 0.01014 (9) | 0.01518 (9) | 0.00126 (6) | 0.00284 (7) | −0.00069 (6) |
N1 | 0.0094 (4) | 0.0131 (4) | 0.0167 (4) | 0.0023 (3) | 0.0020 (3) | −0.0005 (3) |
N2 | 0.0089 (4) | 0.0130 (4) | 0.0186 (4) | 0.0016 (3) | 0.0027 (3) | −0.0005 (3) |
N3 | 0.0118 (4) | 0.0126 (4) | 0.0193 (4) | −0.0005 (3) | 0.0029 (3) | −0.0016 (3) |
N4 | 0.0102 (4) | 0.0169 (4) | 0.0272 (5) | 0.0021 (3) | 0.0013 (3) | −0.0028 (4) |
N5 | 0.0135 (4) | 0.0171 (4) | 0.0171 (4) | −0.0006 (3) | 0.0040 (3) | 0.0012 (3) |
C1 | 0.0125 (4) | 0.0175 (5) | 0.0273 (5) | −0.0017 (4) | 0.0043 (4) | −0.0056 (4) |
C2 | 0.0117 (4) | 0.0149 (4) | 0.0142 (4) | 0.0001 (3) | 0.0027 (3) | −0.0002 (3) |
C3 | 0.0138 (4) | 0.0132 (4) | 0.0174 (4) | −0.0002 (3) | 0.0046 (3) | −0.0013 (4) |
C4 | 0.0165 (4) | 0.0119 (4) | 0.0211 (5) | 0.0014 (4) | 0.0056 (4) | −0.0009 (4) |
C5 | 0.0151 (4) | 0.0130 (4) | 0.0176 (4) | 0.0031 (3) | 0.0051 (3) | 0.0005 (3) |
C6 | 0.0161 (5) | 0.0163 (5) | 0.0299 (6) | 0.0060 (4) | 0.0042 (4) | −0.0021 (4) |
O1 | 0.0177 (4) | 0.0256 (5) | 0.0403 (5) | −0.0090 (3) | 0.0041 (4) | −0.0086 (4) |
O2 | 0.0180 (4) | 0.0175 (4) | 0.0286 (4) | 0.0014 (3) | 0.0086 (3) | −0.0007 (3) |
O3 | 0.0126 (4) | 0.0253 (4) | 0.0401 (5) | 0.0015 (3) | 0.0071 (3) | −0.0080 (4) |
O4 | 0.0148 (3) | 0.0164 (4) | 0.0204 (4) | 0.0013 (3) | 0.0067 (3) | 0.0012 (3) |
Ni1—N2 | 2.0474 (11) | N5—O3 | 1.2548 (13) |
Ni1—N3 | 2.0552 (12) | C1—C3 | 1.4919 (16) |
Ni1—O4 | 2.1520 (10) | C1—H3 | 0.948 (17) |
N1—N2 | 1.3776 (12) | C1—H4 | 0.95 (2) |
N1—C2 | 1.4186 (14) | C1—H5 | 0.961 (19) |
N1—C5 | 1.3753 (14) | C3—C4 | 1.4106 (14) |
N2—C3 | 1.3275 (14) | C4—C5 | 1.3701 (16) |
N3—C2 | 1.2833 (14) | C4—H2 | 0.91 (2) |
N3—H1 | 0.75 (2) | C5—C6 | 1.4863 (15) |
N4—C2 | 1.3402 (14) | C6—H6 | 0.93 (2) |
N4—H9 | 0.83 (2) | C6—H7 | 0.939 (18) |
N4—H10 | 0.817 (19) | C6—H8 | 0.983 (17) |
N5—O1 | 1.2402 (13) | O4—H11 | 0.83 (2) |
N5—O2 | 1.2589 (13) | O4—H12 | 0.76 (2) |
N2—Ni1—N3 | 77.67 (4) | H4—C1—H5 | 105.6 (16) |
N2—Ni1—O4 | 91.05 (4) | N1—C2—N4 | 117.35 (10) |
N3—Ni1—O4 | 88.43 (4) | N1—C2—N3 | 115.55 (9) |
N2—N1—C2 | 115.77 (8) | N4—C2—N3 | 127.10 (10) |
N2—N1—C5 | 110.71 (8) | C1—C3—N2 | 122.00 (9) |
C2—N1—C5 | 133.49 (9) | C1—C3—C4 | 127.92 (10) |
N1—N2—Ni1 | 113.64 (7) | N2—C3—C4 | 110.08 (9) |
N1—N2—C3 | 106.16 (8) | C3—C4—C5 | 106.87 (10) |
Ni1—N2—C3 | 140.19 (7) | C3—C4—H2 | 125.4 (11) |
Ni1—N3—C2 | 117.24 (7) | C5—C4—H2 | 127.7 (11) |
Ni1—N3—H1 | 132.7 (15) | N1—C5—C4 | 106.18 (9) |
C2—N3—H1 | 109.9 (15) | N1—C5—C6 | 126.18 (10) |
C2—N4—H9 | 120.7 (14) | C4—C5—C6 | 127.62 (10) |
C2—N4—H10 | 116.8 (13) | C5—C6—H6 | 104.9 (12) |
H9—N4—H10 | 121.0 (18) | C5—C6—H7 | 112.3 (11) |
O1—N5—O2 | 120.74 (10) | H6—C6—H7 | 108.8 (16) |
O1—N5—O3 | 119.80 (10) | C5—C6—H8 | 111.8 (10) |
O2—N5—O3 | 119.46 (9) | H6—C6—H8 | 108.8 (16) |
C3—C1—H3 | 111.5 (10) | H7—C6—H8 | 109.9 (15) |
C3—C1—H4 | 109.6 (12) | Ni1—O4—H11 | 114.0 (14) |
H3—C1—H4 | 108.9 (16) | Ni1—O4—H12 | 110.5 (15) |
C3—C1—H5 | 109.9 (11) | H11—O4—H12 | 103 (2) |
H3—C1—H5 | 111.0 (15) |
D—H···A | D—H | H···A | D···A | D—H···A |
N4—H9···O1i | 0.83 (2) | 2.256 (19) | 2.8604 (18) | 130.0 (17) |
N4—H10···O2ii | 0.818 (19) | 2.113 (19) | 2.9171 (18) | 167.5 (18) |
O4—H12···O2 | 0.76 (2) | 2.09 (2) | 2.8537 (16) | 179 (2) |
O4—H11···O3iii | 0.82 (2) | 2.17 (2) | 2.9849 (17) | 169.9 (18) |
Symmetry codes: (i) x+1/2, −y+1/2, z+1/2; (ii) −x+3, −y+1, −z+2; (iii) −x+5/2, y+1/2, −z+3/2. |
Experimental details
(I) | (II) | |
Crystal data | ||
Chemical formula | [Co(C6H10N4)2(H2O)2](NO3)2 | [Ni(C6H10N4)2(H2O)2](NO3)2 |
Mr | 495.32 | 495.10 |
Crystal system, space group | Monoclinic, P21/n | Monoclinic, P21/n |
Temperature (K) | 120 | 120 |
a, b, c (Å) | 9.1067 (11), 10.9344 (13), 10.4425 (13) | 9.077 (3), 10.866 (4), 10.456 (3) |
β (°) | 107.602 (2) | 107.251 (15) |
V (Å3) | 991.1 (2) | 985.0 (6) |
Z | 2 | 2 |
Radiation type | Mo Kα | Mo Kα |
µ (mm−1) | 0.93 | 1.05 |
Crystal size (mm) | 0.24 × 0.10 × 0.10 | 0.20 × 0.20 × 0.12 |
Data collection | ||
Diffractometer | Bruker SMART CCD area-detector diffractometer | Bruker SMART CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.840, 0.911 | 0.803, 0.881 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 13055, 2975, 2920 | 13257, 2990, 2617 |
Rint | 0.02 | 0.02 |
(sin θ/λ)max (Å−1) | 0.723 | 0.726 |
Refinement | ||
R[F2 > 2σ(F2)], wR(F2), S | 0.027, 0.062, 0.98 | 0.026, 0.062, 0.98 |
No. of reflections | 2920 | 2617 |
No. of parameters | 190 | 190 |
H-atom treatment | All H-atom parameters refined | All H-atom parameters refined |
Δρmax, Δρmin (e Å−3) | 0.44, −0.38 | 0.47, −0.47 |
Computer programs: SMART (Bruker, 1999), SAINT (Bruker, 1999), SAINT, SIR92 (Altomare et al., 1994), CRYSTALS (Betteridge et al., 2003), ATOMS (Dowty, 2000), CRYSTALS.
Co1—N2 | 2.0871 (8) | N5—O1 | 1.2408 (11) |
Co1—N3 | 2.0842 (9) | N5—O2 | 1.2582 (11) |
Co1—O4 | 2.1737 (7) | N5—O3 | 1.2546 (11) |
N1—N2 | 1.3778 (10) | N4—C1 | 1.3361 (12) |
N1—C1 | 1.4176 (12) | C2—C3 | 1.4918 (13) |
N1—C5 | 1.3731 (12) | C3—C4 | 1.4104 (12) |
N2—C3 | 1.3256 (12) | C4—C5 | 1.3717 (13) |
N3—C1 | 1.2890 (12) | C5—C6 | 1.4860 (13) |
N2—Co1—N3 | 76.46 (3) | N3—Co1—O4 | 87.79 (3) |
N2—Co1—O4 | 91.79 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N4—H9···O1i | 0.84 (2) | 2.249 (18) | 2.8572 (13) | 129.7 (16) |
N4—H10···O2ii | 0.811 (18) | 2.114 (18) | 2.9136 (13) | 168.8 (18) |
O4—H11···O2 | 0.772 (19) | 2.081 (19) | 2.8539 (12) | 179.5 (14) |
O4—H12···O3iii | 0.85 (2) | 2.14 (2) | 2.9799 (12) | 169.6 (18) |
Symmetry codes: (i) x+1/2, −y+1/2, z+1/2; (ii) −x+3, −y+1, −z+2; (iii) −x+5/2, y+1/2, −z+3/2. |
Ni1—N2 | 2.0474 (11) | N4—C2 | 1.3402 (14) |
Ni1—N3 | 2.0552 (12) | N5—O1 | 1.2402 (13) |
Ni1—O4 | 2.1520 (10) | N5—O2 | 1.2589 (13) |
N1—N2 | 1.3776 (12) | N5—O3 | 1.2548 (13) |
N1—C2 | 1.4186 (14) | C1—C3 | 1.4919 (16) |
N1—C5 | 1.3753 (14) | C3—C4 | 1.4106 (14) |
N2—C3 | 1.3275 (14) | C4—C5 | 1.3701 (16) |
N3—C2 | 1.2833 (14) | C5—C6 | 1.4863 (15) |
N2—Ni1—N3 | 77.67 (4) | N3—Ni1—O4 | 88.43 (4) |
N2—Ni1—O4 | 91.05 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
N4—H9···O1i | 0.83 (2) | 2.256 (19) | 2.8604 (18) | 130.0 (17) |
N4—H10···O2ii | 0.818 (19) | 2.113 (19) | 2.9171 (18) | 167.5 (18) |
O4—H12···O2 | 0.76 (2) | 2.09 (2) | 2.8537 (16) | 179 (2) |
O4—H11···O3iii | 0.82 (2) | 2.17 (2) | 2.9849 (17) | 169.9 (18) |
Symmetry codes: (i) x+1/2, −y+1/2, z+1/2; (ii) −x+3, −y+1, −z+2; (iii) −x+5/2, y+1/2, −z+3/2. |
Acknowledgements
The purchase of the Bruker AXS SMART diffractometer with a Bede Microsource was facilitated by grant No. HEFCE/JR00DUHOEQ. This work was financed in part by the Ministry for Science and Technology of the Republic of Serbia (Project No. 1318 – `Physicochemical, structural and biological investigation of complex compounds').
References
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Transition metal complexes with pyrazole-derived ligands exhibit interesting coordination chemistry and have attracted the research interest of numerous authors (Trofimenko, 1972, 1986, 1993, and references therein). These phases find applications in antipyretics and antirheumatics, in herbicides and fungicides, and also as metal ion extragents [extractants?] (Ding et al., 1994; Goslar et al., 1988). A more recent area of research activity has focused on the biocoordination chemistry of pyrazole and its macrocyclic derivatives (Bienvenue et al., 1995; Gupta et al., 1996).
We have synthesized and characterized a number of pyrazole-derived ligands and their metal complexes, with the aim of investigating the influence of the pyrazole ring substituents on complex formation (Jaćimović et al., 1999, 2003; Tomić et al., 2000; Mészáros Szécsényi et al., 2001, 2003). We report here the crystal structures of the isomorphous Co and Ni complexes of the ligand 3,5-dimethylpyrazole-1-carboxamidine nitrate (Khudoyarov et al., 1995). The Co complex, (I), has been prepared for the first time, while the structure of the Ni analogue, (II), has been determined previously (Podder et al., 1986). However, the geometry and orientation of the water molecules in that reported structure was implausible. For example, the O—H bond lengths are 0.64 and 0.90 Å, the H—O—H bond angle is 96°, and the molecule is oriented in such a way that one of the H atoms lies only 1.4 Å away from the Ni centre. Clearly, such an incorrect model does not permit an accurate description of the hydrogen-bonding interactions, which play a significant role in the stability of this complex and which will be discussed below. \sch
The asymmetric unit of (I) and (II) contains half an (MC12N8O2H24)2+ cation, located on an inversion centre, and an NO3− anion. The CoII and NiII cations are found in a distorted octahedral environment, coordinated to the ligand in the equatorial plane through the pyrazole ring N atoms and the adjacent amidinium group N atoms. The coordination sphere is completed by two O atoms belonging to water molecules in axial positions (Fig. 1).
In (I), the equatorial bond lengths are Co—N2 2.0871 (8) and Co—N3 2.0842 (9) Å, and the ligand bite angle is 76.46 (3)°. The axial Co—O4 bond length is 2.1737 (7) Å. The corresponding parameters for (II) are 2.0474 (11) and 2.0552 (12) Å, 77.67 (4)°, and 2.1520 (10) Å. In both cases, the ligand ring system is essentially planar, with the amidinium group tilted relative to the substituted pyrazole ring by 3.7° in (I) and by 2.2° in (II). This is in contrast with the molecular structure of the ligand itself (Khudoyarov et al., 1995), where a significant departure from planarity exists, with the amidinium group twisted at an angle of 34° relative to the plane of the pyrazole ring. In the formation of complexes (I) and (II), the geometry of the ligand is adjusted to accommodate the coordination requirements of the transition metal.
Packing diagrams for the title complexes are shown in Fig. 2. The cations pack in such a way that molecules lying parallel form layers of alternating orientation. Layers of cations are separated by layers of nitrate anions. This arrangement gives rise to a system of hydrogen bonding involving the N atoms of the amino group and the water O atoms as donors, and the O atoms of the nitrate groups as acceptors. Two O atoms of a given nitrate group form hydrogen bonds to two cations in the layer above (with the amino group on one molecule and water on the other), while the third forms a bifurcated hydrogen bond to two cations in the layer below. The adjacent nitrate group forms the same number and types of hydrogen bonds, but in the opposite orientation, as shown in Fig. 2. Details of the hydrogen-bonding geometries for the two complexes are given in Tables 2 and 4. This three-dimensional pattern of hydrogen bonding imparts stability to the crystal structures of these two complexes.