organic compounds
11-Methyl-2,3-benzodipyrrin-1-one
aDepartment of Chemistry, Queen Mary, University of London, Mile End Road, London E1 4NS, England, and bDepartament de Química Orgànica, Facultat de Química, Universitat de Barcelona, Marti i Franquès 1-11, Barcelona 08028, Spain
*Correspondence e-mail: r.bonnett@qmul.ac.uk
The title compound {alternative names: 11-methyl-2,3-benzopyrromethenone and 3-[(1-methylpyrrol-2-yl)methylidene]-2,3-dihydro-1H-isoindol-1-one}, C14H12N2O, was prepared by the base-catalysed condensation of phthalimidine with 2-formyl-1-methylpyrrole; yellow orthorhombic crystals, Pbca, were obtained from ethanol. The molecule is almost planar, having Z(−)antiperiplanar geometry. The molecules are arranged in pairs with intermolecular hydrogen bonding between lactam functions. Comparison with literature values for polyalkyldipyrrin-1-ones shows that, apart from the local constraints of the benzene ring, the fused benzo ring has little effect on the molecular dimensions of the dipyrrin-1-one skeleton.
Comment
Bilirubin, which adopts a ridge-tile structure with extensive intramolecular hydrogen bonding in the crystal (Bonnett et al., 1978), contains two inequivalent dipyrrin-1-one (pyrromethenone) units. Such units also occur in a variety of other plant and animal linear tetrapyrroles. Hence, the crystal structures of dipyrrin-1-ones have attracted some attention [for a review, see Sheldrick (1983)]. We have also had an interest in dipyrrin-1-ones as potential building blocks for the synthesis of benzoporphyrins (Bonnett & McManus, 1996; Valles et al., 1996).
This report concerns the 2,3-benzodipyrrin-1-one system, as the 11-methyl derivative, (I). Few representatives of this system have been described (Swanson, 1991; Boiadjiev & Lightner, 2003a), and we have found no previous X-ray determination in this series. However, X-ray analyses have been reported for two distantly related structures, namely 3-[(pyrrol-2-yl)methylidene]indolin-2-one, derived from 2-oxindole (Boiadjiev & Lightner, 2003b), and 3-benzylideneisoindolin-1-one (Mukherjee et al., 2000). The photophysical properties of (I) in organic solvents and in micellar preparations have been reported (Gerhardt et al., 2003), but the compound was there formulated with the Z–syn geometry.
The molecular structure of (I) is shown in Fig. 1. X-Ray analysis shows that the molecule has a 4-Z-antiperiplanar geometry, the chromophore being essentially planar, with N10—C4—C5—C6 and C4—C5—C6—N11 torsion angles of −2.0 (3) and 178.05 (16)°, respectively. Cullen et al. (1979) reported a similar geometry for 11-methyl-2,3-dimethyldipyrrin-1-one and, as with that compound, the molecules in (I) are arranged in the crystal as dimers, with intermolecular hydrogen bonding between lactam groups (Table 1 and Fig. 2).
The bond lengths and angles observed here are similar to those observed in other 4-Z-dipyrrin-1-ones, namely (III) (Cullen et al., 1977), (IV) and (V) (Cullen et al., 1979), all of which have only alkyl substitution. The main difference, as might be anticipated, is in the region of the benzenoid ring; thus, the C2—C3 bond length in (I), at 1.391 (2) Å, is significantly longer than the average (1.325 Å) of that bond length for compounds (III)–(V). It may be noted that 4-E-dipyrrin-1-ones have also been prepared, typically by of the Z compounds, and X-ray structures are available (Sheldrick et al., 1977; Hori et al., 1981).
Other comparisons are made in Table 2. The bond lengths around the C5 bridge are of interest. The C4—C5 bond is slightly longer than expected for a double bond [although this discrepancy is marginal for (I), it still occurs], and the C5—C6 bond is slightly shorter than expected for a single bond. These changes are in accord with the pattern of delocalization shown in (VI). Cullen et al. (1979) have noted that the C1—N10 bond is significantly shorter than the C4—N10 bond, and this is also apparent in the 2,3-benzo derivative (I). We attribute this fact to the well known partial double-bond character of the C—N bond in amide functions. There is also a difference in length between the C9—N11 and C6—N11 bonds, the former being the shorter because of the delocalization represented in (VI). Although this delocalization can occur in (I) (although it is less pronounced because of the formal disruption of the benzenoid ring), it cannot occur in the Z-2,3-dihydro system (VII), and in this example the C9—N11 bond [1.386 (5) Å] is actually increased with respect to the C6—N11 bond
[1.373 (5) Å] (Gossauer et al., 1976) because of delocalization to the 9-ethoxycarbonyl group.Experimental
Compound (I) was prepared as follows (Swanson, 1991). A solution of phthalimidine (isoindol-1-one, 0.63 g) and 2-formyl-1-methylpyrrole (0.51 g) in ethanol (25 ml) was treated with aqueous sodium hydroxide (4 M, 20 ml) and heated under reflux for 7 h. The resulting yellow–orange solution was poured into ice-water. The bright-yellow precipitate was filtered off and washed with water to give a bright-yellow powder (0.30 g). Extraction of the filtrate with chloroform gave a further 0.05 g. The combined yellow solids were crystallized from ethanol to give (I) (0.19 g, 20%) as fine yellow needles (m.p. 471–475 K, with decomposition). Working on a larger scale allowed the yield to be increased to 40%. λmax (MeOH): 386 nm (∊ 21 200 M−1 cm−1). νmax (KBr): 3400–3200, 1680, 1610, 1470, 1430, 1320 cm−1. Analysis calculated for C14H12N2O: C 75.00, H 5.36, N 12.50%; found: C 74.83, H 5.32, N12.45%. Single crystals suitable for X-ray analysis were grown from ethanol.
Crystal data
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Data collection
Refinement
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H atoms were treated as riding atoms (C—H = 0.95 and 0.98 Å, and N—H = 0.88 Å).
Data collection: COLLECT (Hooft, 1998); cell DENZO (Otwinowski & Minor, 1997) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 1998); software used to prepare material for publication: WinGX (Farrugia, 1999).
Supporting information
10.1107/S0108270104026708/fa1085sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S0108270104026708/fa1085Isup2.hkl
The title compound, (I), was prepared as follows (Swanson, 1991). A solution of phthalimidine (isoindol-1-one, 0.63 g) and 2-formyl-1-methylpyrrole (0.51 g) in ethanol (25 ml) was treated with aqueous sodium hydroxide (4M, 20 ml), and heated under reflux for 7 h. The resulting yellow–orange solution was poured into ice-water. The resulting bright-yellow precipitate was filtered off and washed with water to give a bright-yellow powder (0.30 g). Extraction of the filtrate with chloroform gave a further 0.05 g. The combined yellow solids were crystallized from ethanol to give 11-methyl-2,3-benzodipyrrin-1-one (1, 0.19 g, 20%) as fine yellow needles (m.p. 471–475 K, with decomposition). Working on a larger scale allowed the yield to be increased to 40%. λmax (MeOH) 386 nm (ε 21,200 M−1cm−1). νmax (KBr) 3400–3200, 1680, 1610, 1470, 1430, 1320 cm−1. Analysis calculated for C14H12N2O: C 75.00, H 5.36, N 12.50%; found: C 74.83, H 5.32, N12.45%. Single crystals suitable for X-ray analysis were grown from ethanol.
Data collection: COLLECT (Hooft, 1998); cell
DENZO (Otwinowski & Minor, 1997) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: SHELXS97 ((Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 1998); software used to prepare material for publication: WinGX (Farrugia, 1999).Fig. 1. Molecular structure of (I). | |
Fig. 2. Dimeric assembly of (I), involving hydrogen-bonded lactam groups. [Symmetry code: (a) −x + 1,-y,-z.] |
C14H12N2O | Dx = 1.308 Mg m−3 |
Mr = 224.26 | Mo Kα radiation, λ = 0.71073 Å |
Orthorhombic, Pbca | Cell parameters from 2787 reflections |
a = 19.5886 (14) Å | θ = 2.9–27.5° |
b = 13.8924 (9) Å | µ = 0.08 mm−1 |
c = 8.3714 (3) Å | T = 120 K |
V = 2278.1 (2) Å3 | Slab, yellow |
Z = 8 | 0.26 × 0.14 × 0.05 mm |
F(000) = 944 |
Bruker-Nonius 95mm CCD camera on κ-goniostat diffractometer | 2597 independent reflections |
Radiation source: Bruker–Nonius FR591 rotating-anode | 1530 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.074 |
Detector resolution: 9.091 pixels mm-1 | θmax = 27.5°, θmin = 3.0° |
ϕ and ω scans | h = −18→25 |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | k = −14→18 |
Tmin = 0.978, Tmax = 0.996 | l = −10→8 |
11508 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.054 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.130 | H-atom parameters constrained |
S = 1.00 | w = 1/[σ2(Fo2) + (0.0647P)2] where P = (Fo2 + 2Fc2)/3 |
2597 reflections | (Δ/σ)max < 0.001 |
155 parameters | Δρmax = 0.22 e Å−3 |
0 restraints | Δρmin = −0.21 e Å−3 |
C14H12N2O | V = 2278.1 (2) Å3 |
Mr = 224.26 | Z = 8 |
Orthorhombic, Pbca | Mo Kα radiation |
a = 19.5886 (14) Å | µ = 0.08 mm−1 |
b = 13.8924 (9) Å | T = 120 K |
c = 8.3714 (3) Å | 0.26 × 0.14 × 0.05 mm |
Bruker-Nonius 95mm CCD camera on κ-goniostat diffractometer | 2597 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | 1530 reflections with I > 2σ(I) |
Tmin = 0.978, Tmax = 0.996 | Rint = 0.074 |
11508 measured reflections |
R[F2 > 2σ(F2)] = 0.054 | 0 restraints |
wR(F2) = 0.130 | H-atom parameters constrained |
S = 1.00 | Δρmax = 0.22 e Å−3 |
2597 reflections | Δρmin = −0.21 e Å−3 |
155 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.45320 (10) | 0.12758 (13) | −0.0406 (2) | 0.0270 (5) | |
C2 | 0.42832 (9) | 0.22602 (12) | −0.06893 (18) | 0.0223 (4) | |
C3 | 0.47004 (9) | 0.28845 (12) | 0.01674 (17) | 0.0223 (4) | |
C4 | 0.52300 (9) | 0.23223 (12) | 0.09729 (18) | 0.0228 (4) | |
C5 | 0.57387 (9) | 0.26733 (13) | 0.18882 (18) | 0.0241 (4) | |
H5 | 0.5749 | 0.3355 | 0.1974 | 0.029* | |
C6 | 0.62669 (9) | 0.21829 (13) | 0.27542 (17) | 0.0228 (4) | |
C7 | 0.64078 (9) | 0.12173 (13) | 0.30170 (19) | 0.0270 (5) | |
H7 | 0.6158 | 0.0688 | 0.2601 | 0.032* | |
C8 | 0.69855 (10) | 0.11603 (14) | 0.40061 (19) | 0.0304 (5) | |
H8 | 0.7198 | 0.0588 | 0.4377 | 0.036* | |
C9 | 0.71863 (10) | 0.20852 (13) | 0.43374 (19) | 0.0299 (5) | |
H9 | 0.7564 | 0.2264 | 0.4983 | 0.036* | |
C10 | 0.37414 (9) | 0.25857 (14) | −0.16058 (19) | 0.0271 (5) | |
H10 | 0.3464 | 0.2151 | −0.2193 | 0.032* | |
C11 | 0.36179 (10) | 0.35676 (14) | −0.1636 (2) | 0.0297 (5) | |
H11 | 0.3254 | 0.3814 | −0.2263 | 0.036* | |
C12 | 0.40241 (10) | 0.41964 (13) | −0.0753 (2) | 0.0308 (5) | |
H12 | 0.3926 | 0.4866 | −0.0774 | 0.037* | |
C13 | 0.45682 (10) | 0.38681 (13) | 0.01553 (19) | 0.0285 (5) | |
H13 | 0.4843 | 0.4302 | 0.0752 | 0.034* | |
C14 | 0.68193 (11) | 0.37441 (14) | 0.3662 (2) | 0.0338 (5) | |
H14A | 0.7192 | 0.3915 | 0.4391 | 0.051* | |
H14B | 0.6391 | 0.4024 | 0.4052 | 0.051* | |
H14C | 0.6919 | 0.3996 | 0.2594 | 0.051* | |
N10 | 0.50882 (8) | 0.13602 (10) | 0.05761 (16) | 0.0258 (4) | |
H1 | 0.5329 | 0.0868 | 0.0920 | 0.031* | |
N11 | 0.67539 (8) | 0.27026 (11) | 0.35879 (14) | 0.0258 (4) | |
O1 | 0.42990 (7) | 0.05076 (9) | −0.09345 (14) | 0.0373 (4) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0277 (12) | 0.0287 (11) | 0.0245 (9) | 0.0000 (9) | −0.0002 (8) | −0.0017 (8) |
C2 | 0.0228 (11) | 0.0244 (10) | 0.0197 (8) | 0.0005 (8) | 0.0036 (7) | −0.0001 (7) |
C3 | 0.0232 (11) | 0.0256 (10) | 0.0181 (8) | −0.0008 (8) | 0.0035 (7) | 0.0007 (7) |
C4 | 0.0260 (11) | 0.0226 (10) | 0.0197 (8) | −0.0015 (8) | 0.0041 (8) | −0.0004 (7) |
C5 | 0.0274 (11) | 0.0235 (10) | 0.0213 (8) | −0.0033 (8) | 0.0036 (8) | 0.0003 (7) |
C6 | 0.0229 (11) | 0.0283 (11) | 0.0172 (8) | −0.0052 (8) | 0.0012 (7) | −0.0012 (7) |
C7 | 0.0288 (12) | 0.0285 (11) | 0.0236 (9) | −0.0034 (9) | −0.0024 (8) | −0.0019 (8) |
C8 | 0.0313 (12) | 0.0316 (11) | 0.0282 (9) | 0.0017 (9) | 0.0004 (8) | 0.0015 (8) |
C9 | 0.0248 (11) | 0.0397 (12) | 0.0252 (9) | −0.0040 (9) | −0.0037 (8) | 0.0003 (8) |
C10 | 0.0247 (11) | 0.0307 (12) | 0.0258 (9) | −0.0017 (9) | 0.0033 (8) | −0.0036 (8) |
C11 | 0.0252 (12) | 0.0330 (12) | 0.0308 (10) | 0.0039 (9) | −0.0006 (8) | 0.0019 (8) |
C12 | 0.0342 (12) | 0.0245 (11) | 0.0336 (10) | 0.0053 (9) | 0.0013 (9) | 0.0015 (9) |
C13 | 0.0309 (12) | 0.0255 (10) | 0.0289 (9) | −0.0032 (9) | 0.0010 (8) | −0.0008 (8) |
C14 | 0.0366 (13) | 0.0304 (12) | 0.0342 (10) | −0.0100 (10) | −0.0039 (9) | −0.0025 (8) |
N10 | 0.0277 (10) | 0.0225 (9) | 0.0271 (8) | 0.0026 (7) | −0.0039 (7) | 0.0000 (6) |
N11 | 0.0258 (9) | 0.0279 (9) | 0.0236 (7) | −0.0054 (7) | −0.0010 (6) | 0.0014 (6) |
O1 | 0.0424 (9) | 0.0246 (8) | 0.0448 (7) | −0.0013 (7) | −0.0136 (7) | −0.0070 (6) |
C1—O1 | 1.242 (2) | C8—H8 | 0.9500 |
C1—N10 | 1.370 (2) | C9—N11 | 1.359 (2) |
C1—C2 | 1.471 (2) | C9—H9 | 0.9500 |
C2—C10 | 1.385 (2) | C10—C11 | 1.386 (2) |
C2—C3 | 1.391 (2) | C10—H10 | 0.9500 |
C3—C13 | 1.391 (2) | C11—C12 | 1.394 (3) |
C3—C4 | 1.463 (2) | C11—H11 | 0.9500 |
C4—C5 | 1.348 (2) | C12—C13 | 1.386 (3) |
C4—N10 | 1.405 (2) | C12—H12 | 0.9500 |
C5—C6 | 1.435 (2) | C13—H13 | 0.9500 |
C5—H5 | 0.9500 | C14—N11 | 1.454 (2) |
C6—N11 | 1.385 (2) | C14—H14A | 0.9800 |
C6—C7 | 1.387 (2) | C14—H14B | 0.9800 |
C7—C8 | 1.404 (3) | C14—H14C | 0.9800 |
C7—H7 | 0.9500 | N10—H1 | 0.8800 |
C8—C9 | 1.372 (2) | ||
O1—C1—N10 | 125.42 (17) | C8—C9—H9 | 125.7 |
O1—C1—C2 | 128.28 (17) | C2—C10—C11 | 117.73 (17) |
N10—C1—C2 | 106.30 (15) | C2—C10—H10 | 121.1 |
C10—C2—C3 | 122.15 (17) | C11—C10—H10 | 121.1 |
C10—C2—C1 | 130.29 (16) | C10—C11—C12 | 120.49 (18) |
C3—C2—C1 | 107.57 (15) | C10—C11—H11 | 119.8 |
C13—C3—C2 | 119.96 (16) | C12—C11—H11 | 119.8 |
C13—C3—C4 | 131.29 (16) | C13—C12—C11 | 121.58 (18) |
C2—C3—C4 | 108.75 (15) | C13—C12—H12 | 119.2 |
C5—C4—N10 | 128.65 (16) | C11—C12—H12 | 119.2 |
C5—C4—C3 | 126.37 (17) | C12—C13—C3 | 118.07 (17) |
N10—C4—C3 | 104.99 (14) | C12—C13—H13 | 121.0 |
C4—C5—C6 | 130.40 (17) | C3—C13—H13 | 121.0 |
C4—C5—H5 | 114.8 | N11—C14—H14A | 109.5 |
C6—C5—H5 | 114.8 | N11—C14—H14B | 109.5 |
N11—C6—C7 | 106.68 (15) | H14A—C14—H14B | 109.5 |
N11—C6—C5 | 120.24 (16) | N11—C14—H14C | 109.5 |
C7—C6—C5 | 133.05 (16) | H14A—C14—H14C | 109.5 |
C6—C7—C8 | 107.96 (16) | H14B—C14—H14C | 109.5 |
C6—C7—H7 | 126.0 | C1—N10—C4 | 112.37 (15) |
C8—C7—H7 | 126.0 | C1—N10—H1 | 123.8 |
C9—C8—C7 | 107.31 (17) | C4—N10—H1 | 123.8 |
C9—C8—H8 | 126.3 | C9—N11—C6 | 109.45 (16) |
C7—C8—H8 | 126.3 | C9—N11—C14 | 123.60 (15) |
N11—C9—C8 | 108.60 (16) | C6—N11—C14 | 126.95 (15) |
N11—C9—H9 | 125.7 | ||
O1—C1—C2—C10 | −0.6 (3) | C7—C8—C9—N11 | 0.0 (2) |
N10—C1—C2—C10 | 179.20 (16) | C3—C2—C10—C11 | −0.7 (2) |
O1—C1—C2—C3 | 179.22 (17) | C1—C2—C10—C11 | 179.10 (16) |
N10—C1—C2—C3 | −0.99 (18) | C2—C10—C11—C12 | −0.8 (3) |
C10—C2—C3—C13 | 1.8 (2) | C10—C11—C12—C13 | 1.2 (3) |
C1—C2—C3—C13 | −178.07 (14) | C11—C12—C13—C3 | −0.1 (3) |
C10—C2—C3—C4 | −178.68 (15) | C2—C3—C13—C12 | −1.3 (2) |
C1—C2—C3—C4 | 1.49 (18) | C4—C3—C13—C12 | 179.23 (16) |
C13—C3—C4—C5 | −2.0 (3) | O1—C1—N10—C4 | 179.88 (17) |
C2—C3—C4—C5 | 178.46 (16) | C2—C1—N10—C4 | 0.08 (19) |
C13—C3—C4—N10 | 178.07 (17) | C5—C4—N10—C1 | −179.07 (16) |
C2—C3—C4—N10 | −1.42 (17) | C3—C4—N10—C1 | 0.80 (18) |
N10—C4—C5—C6 | −2.0 (3) | C8—C9—N11—C6 | −0.19 (19) |
C3—C4—C5—C6 | 178.18 (16) | C8—C9—N11—C14 | −179.25 (15) |
C4—C5—C6—N11 | 178.05 (16) | C7—C6—N11—C9 | 0.35 (18) |
C4—C5—C6—C7 | −4.3 (3) | C5—C6—N11—C9 | 178.52 (14) |
N11—C6—C7—C8 | −0.37 (18) | C7—C6—N11—C14 | 179.38 (16) |
C5—C6—C7—C8 | −178.21 (17) | C5—C6—N11—C14 | −2.4 (2) |
C6—C7—C8—C9 | 0.3 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
N10—H1···O1i | 0.88 | 2.04 | 2.8747 (19) | 157 |
Symmetry code: (i) −x+1, −y, −z. |
Experimental details
Crystal data | |
Chemical formula | C14H12N2O |
Mr | 224.26 |
Crystal system, space group | Orthorhombic, Pbca |
Temperature (K) | 120 |
a, b, c (Å) | 19.5886 (14), 13.8924 (9), 8.3714 (3) |
V (Å3) | 2278.1 (2) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.08 |
Crystal size (mm) | 0.26 × 0.14 × 0.05 |
Data collection | |
Diffractometer | Bruker-Nonius 95mm CCD camera on κ-goniostat diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2003) |
Tmin, Tmax | 0.978, 0.996 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 11508, 2597, 1530 |
Rint | 0.074 |
(sin θ/λ)max (Å−1) | 0.651 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.054, 0.130, 1.00 |
No. of reflections | 2597 |
No. of parameters | 155 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.22, −0.21 |
Computer programs: COLLECT (Hooft, 1998), DENZO (Otwinowski & Minor, 1997) and COLLECT, DENZO and COLLECT, SHELXS97 ((Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 1998), WinGX (Farrugia, 1999).
D—H···A | D—H | H···A | D···A | D—H···A |
N10—H1···O1i | 0.88 | 2.04 | 2.8747 (19) | 157 |
Symmetry code: (i) −x+1, −y, −z. |
Compound | 3 | 4 | 5 | 1 |
Geometry | Z-syn | Z-syn | Z-anti | Z-anti |
periplanar | periplanar | periplanar | periplanar | |
C4 – C5 | 1.347 (10) | 1.354 (1) | 1.350 (3) | 1.348 (2) |
C5 – C6 | 1.405 (10) | 1.431 (1) | 1.445 (3) | 1.435 (2) |
C1 – N10 (N1) | 1.380 (10) | 1.353 (1) | 1.376 (3) | 1.370 (2) |
C4 – N10 (N1) | 1.401 (10) | 1.396 (1) | 1.387 (3) | 1.405 (2) |
C9 – N11 (N2) | 1.362 (9) | 1.354 (1) | 1.362 (3) | 1.359 (2) |
C6 – N11 (N2) | 1.384 (9) | 1.375 (1) | 1.391 (3) | 1.387 (2) |
Ref. | Cullen et al., | Cullen et al., | Cullen et al., | present |
1977 | 1979 | 1979 | work |
Acknowledgements
We thank the EPSRC National Crystallography Service (Southampton University) for data collection, and financial support from the SERC is acknowledged.
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Bilirubin, which adopts a ridge-tile structure with extensive intramolecular hydrogen bonding in the crystal (Bonnett et al., 1978), contains two inequivalent dipyrrin-1-one (pyrromethenone) units. Such units also occur in a variety of other plant and animal linear tetrapyrroles. Hence the crystal structures of dipyrrin-1-ones have attracted some attention [for a review see Sheldrick (1983)]. We have also had an interest in dipyrrin-1-ones as potential building blocks for the synthesis of benzoporphyrins (Bonnett & McManus, 1996; Valles et al., 1996).
This report concerns the 2,3-benzodipyrrin-1-one system, as the 11-methyl derivative (I). Few representatives of this system have been described (Swanson, 1991; Boiadjiev & Lightner, 2003a), and we have found no previous X-ray crystal structure determination in this series. However, X-ray analysis has been reported for two distantly related structures, namely 3-[(pyrrol-2-yl)-methylidenyl]-indolin-2-one, derived from 2-oxindole (Boiadjiev & Lightner, 2003b), and 3-benzylideneisoindolin-1-one (Mukerjee et al., 2000). The photophysical properties of (I) in organic solvent and in micellar preparations have been reported (Gerhardt et al., 2003), but the compound was there formulated with the Z-syn geometry.
The molecular structure of (I) is shown in Fig. 1. X-ray analysis shows that the molecule has a 4-Z-antiperiplanar geometry, the chromophore being essentially planar, with N10—C4—C5—C6 and C4—C5—C6—N11 torsion angles of −2.0 (3) and 178.05 (16)°, respectively. Cullen et al. (1979) reported a similar geometry for 11-methyl-2,3-dimethyldipyrrin-1-one, and as with that compound, the molecules in (I) are arranged in the crystal as dimers, with intermolecular hydrogen bonding between lactam groups (Table 1 and Fig. 2).
The bond lengths and bond angles observed here are similar to those observed in other 4-Z dipyrrin-1-ones, namely (III) (Cullen et al., 1977), (IV) and (V) (Cullen et al., 1979), all of which have only alkyl substitution. The main difference, as might be anticipated, is in the region of the benzenoid ring; thus the C2—C3 bond length in (I), at 1.391 (2) Å, is significantly longer than the average (1.325 Å) of that bond length for compounds (III)–(V). It may be noted that 4-E dipyrrin-1-ones have also been prepared, typically by photoisomerization of the Z compounds, and X-ray stuctures are available (Sheldrick et al., 1977; Hori et al., 1981).
Other comparisons are made in Table 2. The bond lengths around the C5 bridge are of interest. The C4—C5 bond is slightly longer than expected for a double bond [although this discrepancy is marginal for (I), it still occurs], and the C5—C6 bond is slightly shorter than expected for a single bond. These changes are in accord with the pattern of delocalization shown in (VI). Cullen et al. (1979) have noted that the C1—N10 bond is significantly shorter than the C4—N10 bond, and this is also apparent in the 2,3-benzo derivative (I). We attribute this fact to the well known partial double-bond character of the C—N bond in amide functions. There is also a difference in length between the C9—N11 and C6—N11 bonds, the former being the shorter because of the delocalization represented in (VI). Although this delocalization can occur in (I) (although it is less pronounced because of the formal disruption of the benzenoid ring), it cannot occur in the Z-2,3-dihydro system (VII), and in this example the C9—N11 bond [1.386 (5) Å] is actually increased with respect to the C6—N11 bond [1.373 (5) Å] (Gossauer et al., 1976) because of delocalization to the 9-ethoxycarbonyl group.