organic compounds
Isomeric nitrophthalimides: sheets built from N—H⋯O and C—H⋯O hydrogen bonds
aSchool of Chemistry, University of St Andrews, Fife KY16 9ST, Scotland, bDepartment of Chemistry, University of Aberdeen, Meston Walk, Old Aberdeen AB24 3UE, Scotland, and cInstituto de Química, Departamento de Química Inorgânica, Universidade Federal do Rio de Janeiro, 21945-970 Rio de Janeiro, RJ, Brazil
*Correspondence e-mail: cg@st-andrews.ac.uk
Molecules of 3-nitrophthalimide, C8H4N2O4, are linked into sheets by a combination of one N—H⋯O hydrogen bond [H⋯O = 1.99 Å, N⋯O = 2.8043 (14) Å and N—H⋯O = 176°] and two independent C—H⋯O hydrogen bonds [H⋯O = 2.36 and 2.56 Å, C⋯O = 3.1639 (16) and 3.4386 (16) Å, and C—H⋯O = 142 and 153°], and these sheets are linked into pairs by a single π–π stacking interaction. Molecules of isomeric 4-nitrophthalimide are linked into sheets by a combination of one three-centre N—H⋯(O)2 hydrogen bond [H⋯O = 2.14 and 2.55 Å, N⋯O = 2.974 (3) and 3.231 (3) Å, N—H⋯O = 151 and 131°, and O⋯H⋯O = 76°] and two independent two-centre C—H⋯O hydrogen bonds [H⋯O = 2.38 and 2.54 Å, C⋯O = 3.257 (4) and 3.452 (4) Å, and C—H⋯O = 156 and 168°].
Comment
The isomeric title compounds 3-nitrophthalimide, (I), and 4-nitrophthalimide, (II), contain, within very compact molecules, a wide variety of potential hydrogen-bond donors and acceptors (Fig. 1). Both N—H and C—H bonds provide potential donors, while carbonyl and nitro O atoms and the arene ring all provide potential acceptors, although there is a
significant excess of hard acceptors over hard donors (Braga et al., 1995; Desiraju & Steiner, 1999). In addition, aromatic π–π stacking interactions and non-bonded dipolar interactions (Allen et al., 1998) involving both carbonyl and nitro groups are possible, in principle.In the event, the supramolecular structure of (I) (Fig. 1) is dominated by a two-centre N—H⋯O hydrogen bond, in which the acceptor is a carbonyl O atom, and two independent C—H⋯O hydrogen bonds, one involving a carbonyl O atom and the other a nitro O atom as acceptor. By contrast, the supramolecular structure of (II) (Fig. 2) is dominated by one asymmetric three-centre N—H⋯(O)2 hydrogen bond, involving both of the carbonyl O atoms as the acceptors, and two independent two-centre C—H⋯O hydrogen bonds, one involving a carbonyl O atom and the other a nitro O atom as acceptor.
In isomer (I), each of the independent hydrogen bonds (Table 1) can be regarded as producing a one-dimensional (Gregson et al., 2000), all parallel to the [100] direction but all generated by different symmetry operations; the combination of these three motifs generates a sheet. The formation of the sheets in (I) is most readily analysed by considering, in turn, the action of each hydrogen bond. Amine atom N1 in the molecule at (x, y, z) acts as a hydrogen-bond donor to carbonyl atom O1 in the molecule at ( + x, y, − z), so producing a C(4) chain running parallel to the [100] direction and generated by the a-glide plane at z = (Fig. 3).
At the same time, aryl atom C6 in the molecule at (x, y, z) acts as a hydrogen-bond donor to the second carbonyl O atom, O2, in the molecule at (−1 + x, y, z), thus generating by translation a C(7) chain along [100]. The combination of the two motifs having carbonyl acceptors generates a column of R32(14) rings across z = (Fig. 3). Finally, aryl atom C5 at (x, y, z) acts as a hydrogen-bond donor to nitro atom O41 in the molecule at (− + x, y, − z), so forming a C(5) chain along [100], this time generated by the a-glide plane at z = . The combination of the two motifs involving aryl H atoms generates a column of R33(15) rings across z = (Fig. 3). Neither of the rings utilizes all three independent hydrogen bonds. However, the combination of all three hydrogen bonds generates a (010) sheet in which columns of R33(14) rings across z = n + (n = zero or integer) alternate with columns of R33(15) rings across z = n + (n = zero or integer) (Fig. 3). Four sheets of this type pass through each and the sheets are linked weakly into pairs by a single aromatic π–π stacking interaction.
The C3–C8 aryl rings in the molecules at (x, y, z) and (−x, −y, 1 − z) are strictly parallel, with an of 3.309 (2) Å; the ring-centroid separation is 3.758 (2) Å, corresponding to a centroid offset of 1.781 (2) Å (Fig. 4). These two molecules lie in the (010) sheets within the domains 0.02 < y < 0.31 and −0.21 < y < −0.02, respectively, and these two sheets are thus linked into a bilayer. The formation of the bilayer is reinforced by a dipolar interaction between the negatively polarized nitro atom O42 in the molecule at (x, y, z) and the positively polarized carbonyl atom C1 in the molecule at ( − x, −y, + z), which forms part of the sheet in the domain −0.21 < y < −0.02. The C⋯Oi distance [symmetry code: (i) − x, −y, + z] is 2.980 (2) Å and the C⋯Oi—Ni angle is 135.9 (2)°. However, there are no direction-specific interactions between adjacent bilayers
In isomer (II), the hard and soft hydrogen bonds independently generate two one-dimensional substructures, each in the form of a chain of rings, and these chains combine to form sheets. Amine atom N1 in the molecule of (II) at (x, y, z) acts as a hydrogen-bond donor to carbonyl atoms O1 and O2 in the molecules at (2 − x, − + y, − z) and (2 − x, + y, − z), respectively. These two interactions (Table 2) are the strong and weak components of a markedly asymmetric, but essentially planar, three-centre interaction. The sum of the angles at atom H1 is 358°. Together these interactions produce a chain of edge-fused R22(8) rings running parallel to the [010] direction and generated by the 21 screw axis along (1, y, ) (Fig. 5).
In addition, aryl atoms C4 and C7 in the molecule at (x, y, z) act as donors, respectively, to atoms O1 and O51 in the molecules at (−1 + x, −1 + y, z) and (1 + x, 1 + y, z), so generating two individual C(6) chains, whose combined action generates by translation a C(6)C(6)[R22(10)] chain of rings (Bernstein et al., 1995) running parallel to the [110] direction (Fig. 6). The combination of the [010] and [110] chains generates a (001) sheet, which is modestly reinforced by a dipolar interaction between the negatively polarized atom O2 at (x, y, z) and the positively polarized atom C2 at (1 − x, − + y, − z). The O2⋯C2ii distance is 2.906 (3) Å [symmetry code: (ii) 1 − x, − + y, − z] and the C2—O2⋯C2ii angle is 156.1 (2)°, indicating an interaction whose geometry is intermediate between the perpendicular motif I and the sheared motif III described by Allen et al. (1998). The two molecules involved in this interaction lie in the [010] chains along (1, y, ) and (, y, ), so that this dipolar interaction generates a motif along [100] within the (010) sheet. There are no direction-specific interactions between adjacent sheets.
The bond distances and angles within the molecules of (I) and (II) present no unusual values. The dihedral angle between the planes of the aryl ring and the nitro group is 31.6 (2)° in (I) and 8.0 (2)° in (II), so that each molecule has C1; this is sufficient to render the molecules of both isomers chiral. Isomer (I) crystallizes in the centrosymmetric Pbca, as a racemate with equal numbers of both conformational enantiomers present in each single-crystal domain. Isomer (II) crystallizes in P212121 as a fully ordered structure, having only one conformational present in each single-crystal domain.
Experimental
Commercial samples of 3- and 4-nitrophthalimide were obtained from Aldrich, and crystals suitable for single-crystal X-ray diffraction were grown from solutions in ethyl acetate [for (I)] and acetone [for (II)].
Compound (I)
Crystal data
|
Refinement
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Compound (II)
Crystal data
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Data collection
Refinement
|
Pbca for (I) and P212121 for (II) were uniquely assigned from the All H atoms were located from difference maps and then treated as riding atoms, with C—H distances of 0.95 Å and N—H distances of 0.82 Å in (I) at 120 (2) K, and C—H distances of 0.93 Å and N—H distances of 0.92 Å in (II) at 291 (2) K, and with Uiso(H) values of 1.2Ueq(C,N). In the absence of any significant the Flack (1983) parameter for isomer (II) was indeterminate (Flack & Bernardinelli, 2000), and it was not possible to establish the (Jones, 1986). Accordingly, the Friedel equivalent reflections were merged prior to the final refinements.
For compound (I), data collection: COLLECT (Hooft, 1999); cell DENZO (Otwinowski & Minor, 1997) and COLLECT; data reduction: DENZO and COLLECT. For compound (II), data collection: KappaCCD Server Software (Nonius, 1997); cell DENZO–SMN (Otwinowski & Minor, 1997); data reduction: DENZO–SMN. For both compounds, program(s) used to solve structure: OSCAIL (McArdle, 2003) and SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: OSCAIL and SHELXL97 (Sheldrick, 1997); molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: SHELXL97 and PRPKAPPA (Ferguson, 1999).
Supporting information
10.1107/S0108270104026137/sk1783sup1.cif
contains datablocks global, I, II. DOI:Structure factors: contains datablock I. DOI: 10.1107/S0108270104026137/sk1783Isup2.hkl
Structure factors: contains datablock II. DOI: 10.1107/S0108270104026137/sk1783IIsup3.hkl
Commercial samples of 3- and 4-nitrophthalimide (obtained from Aldrich) and crystals suitable for single-crystal X-ray diffraction were grown from solutions in ethyl acetate, for (I), and acetone, for (II).
The space groups Pbca for (I) and P212121 for (II) were uniquely assigned from the
All H atoms were located from difference maps and then treated as riding atoms, with C—H distances 0.95 Å and N—H distances of 0.82 Å in (I) at 120 (2) K, and C—H distances of 0.93 Å and N—H distances of 0.92 Å in (II) at 291 (2) K, and with Uiso(H) values of 1.2Ueq(C,N). In the absence of any significant the Flack (1983) parameter for isomer (II) was indeterminate (Flack & Bernardinelli, 2000), and it was not possible to establish the (Jones, 1986). Accordingly, the Friedel equivalent reflections were merged prior to the final refinements.Data collection: COLLECT (Hooft, 1999) for (I); KappaCCD Server Software (Nonius, 1997) for (II). Cell
DENZO (Otwinowski & Minor, 1997) and COLLECT for (I); DENZO–SMN (Otwinowski & Minor, 1997) for (II). Data reduction: DENZO and COLLECT for (I); DENZO–SMN for (II). For both compounds, program(s) used to solve structure: OSCAIL (McArdle, 2003) and SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: OSCAIL and SHELXL97 (Sheldrick, 1997); molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: SHELXL97 and PRPKAPPA (Ferguson, 1999).Fig. 1. The molecule of isomer (I), showing the atom-labelling scheme. Displacement ellipsoids are drawn at the 30% probability level. | |
Fig. 2. The molecule of isomer (II), showing the atom-labelling scheme. Displacement ellipsoids are drawn at the 30% probability level. | |
Fig. 3. A stereoview of part of the crystal structure of isomer (I), showing the formation of a (010) sheet containing alternating columns of R33(14) and R33(15) rings. | |
Fig. 4. Part of the crystal structure of isomer (I), showing the π–π stacking interaction that links the (010) sheets into pairs. For clarity, H atoms have been omitted. Atoms marked with an asterisk (*) are at the symmetry position (-x, −y, 1 − z). | |
Fig. 5. Part of the crystal structure of isomer (II), showing the formation of a chain of edge-fused rings along [010]. For clarity, H atoms bonded to C atoms have been omitted. Atoms marked with an asterisk (*), a hash (#), a dollar sign () or an ampersand (&) are at the symmetry positions (2 − x, 0.5 + y, 1.5 − z), (2 − x, −0.5 + y, 1.5 − z), (x, −1 + y, z) and (x, 1 + y, z), respectively. | |
Fig. 6. Part of the crystal structure of isomer (II), showing the formation of a chain of rings along [110]. Atoms marked with an asterisk (*) or a hash (#) are in the molecules at (1 + x, 1 + y, z) and (−1 + x, −1 + y, z), respectively. |
C8H4N2O4 | F(000) = 784 |
Mr = 192.13 | Dx = 1.705 Mg m−3 |
Orthorhombic, Pbca | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ac 2ab | Cell parameters from 1703 reflections |
a = 8.2208 (2) Å | θ = 3.1–27.5° |
b = 13.0786 (4) Å | µ = 0.14 mm−1 |
c = 13.9233 (4) Å | T = 120 K |
V = 1496.99 (7) Å3 | Plate, colourless |
Z = 8 | 0.48 × 0.32 × 0.08 mm |
Bruker-Nonius 95mm CCD camera on κ-goniostat diffractometer | 1703 independent reflections |
Radiation source: Bruker–Nonius FR591 rotating anode | 1488 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.037 |
Detector resolution: 9.091 pixels mm-1 | θmax = 27.5°, θmin = 3.1° |
ϕ & ω scans | h = −10→10 |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | k = −16→15 |
Tmin = 0.954, Tmax = 0.989 | l = −18→16 |
19573 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.039 | H-atom parameters constrained |
wR(F2) = 0.099 | w = 1/[σ2(Fo2) + (0.0527P)2 + 0.5962P] where P = (Fo2 + 2Fc2)/3 |
S = 1.10 | (Δ/σ)max < 0.001 |
1703 reflections | Δρmax = 0.33 e Å−3 |
129 parameters | Δρmin = −0.42 e Å−3 |
0 restraints | Extinction correction: SHELXL97, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.033 (4) |
C8H4N2O4 | V = 1496.99 (7) Å3 |
Mr = 192.13 | Z = 8 |
Orthorhombic, Pbca | Mo Kα radiation |
a = 8.2208 (2) Å | µ = 0.14 mm−1 |
b = 13.0786 (4) Å | T = 120 K |
c = 13.9233 (4) Å | 0.48 × 0.32 × 0.08 mm |
Bruker-Nonius 95mm CCD camera on κ-goniostat diffractometer | 1703 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | 1488 reflections with I > 2σ(I) |
Tmin = 0.954, Tmax = 0.989 | Rint = 0.037 |
19573 measured reflections |
R[F2 > 2σ(F2)] = 0.039 | 0 restraints |
wR(F2) = 0.099 | H-atom parameters constrained |
S = 1.10 | Δρmax = 0.33 e Å−3 |
1703 reflections | Δρmin = −0.42 e Å−3 |
129 parameters |
x | y | z | Uiso*/Ueq | ||
N1 | 0.41423 (13) | 0.16003 (9) | 0.34763 (7) | 0.0189 (3) | |
C1 | 0.25286 (16) | 0.17714 (9) | 0.32887 (8) | 0.0172 (3) | |
O1 | 0.19836 (10) | 0.20978 (7) | 0.25357 (6) | 0.0209 (2) | |
C2 | 0.44360 (15) | 0.12650 (10) | 0.44109 (9) | 0.0173 (3) | |
O2 | 0.57573 (11) | 0.10362 (7) | 0.47130 (7) | 0.0229 (3) | |
C3 | 0.27874 (15) | 0.12461 (9) | 0.48828 (9) | 0.0162 (3) | |
C4 | 0.22350 (15) | 0.10039 (9) | 0.57975 (9) | 0.0169 (3) | |
C5 | 0.05837 (16) | 0.09960 (9) | 0.59990 (9) | 0.0190 (3) | |
C6 | −0.05338 (16) | 0.12442 (10) | 0.52875 (9) | 0.0194 (3) | |
C7 | −0.00199 (15) | 0.15097 (9) | 0.43675 (9) | 0.0180 (3) | |
C8 | 0.16350 (15) | 0.15055 (9) | 0.41884 (8) | 0.0160 (3) | |
N4 | 0.33533 (14) | 0.07751 (8) | 0.65906 (7) | 0.0202 (3) | |
O41 | 0.46763 (13) | 0.12029 (8) | 0.65980 (7) | 0.0284 (3) | |
O42 | 0.28788 (13) | 0.01824 (8) | 0.72135 (7) | 0.0292 (3) | |
H1 | 0.4950 | 0.1735 | 0.3159 | 0.037 (5)* | |
H5 | 0.0216 | 0.0821 | 0.6624 | 0.023* | |
H6 | −0.1664 | 0.1233 | 0.5431 | 0.023* | |
H7 | −0.0779 | 0.1687 | 0.3881 | 0.022* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0147 (5) | 0.0266 (6) | 0.0154 (5) | −0.0013 (4) | 0.0017 (4) | −0.0002 (4) |
C1 | 0.0178 (6) | 0.0167 (6) | 0.0170 (6) | −0.0011 (5) | −0.0009 (5) | −0.0031 (5) |
O1 | 0.0220 (5) | 0.0258 (5) | 0.0151 (4) | −0.0011 (4) | −0.0029 (3) | 0.0018 (4) |
C2 | 0.0163 (6) | 0.0188 (6) | 0.0167 (6) | −0.0005 (5) | 0.0000 (5) | −0.0034 (5) |
O2 | 0.0161 (5) | 0.0294 (5) | 0.0233 (5) | 0.0022 (4) | −0.0028 (4) | −0.0004 (4) |
C3 | 0.0159 (6) | 0.0165 (6) | 0.0163 (6) | 0.0001 (5) | −0.0004 (5) | −0.0014 (5) |
C4 | 0.0183 (6) | 0.0173 (6) | 0.0152 (6) | 0.0002 (5) | −0.0025 (5) | −0.0006 (5) |
C5 | 0.0211 (7) | 0.0186 (6) | 0.0173 (6) | −0.0008 (5) | 0.0033 (5) | −0.0018 (5) |
C6 | 0.0169 (6) | 0.0197 (6) | 0.0214 (6) | 0.0000 (5) | 0.0015 (5) | −0.0034 (5) |
C7 | 0.0166 (6) | 0.0179 (6) | 0.0196 (6) | 0.0009 (5) | −0.0023 (5) | −0.0019 (5) |
C8 | 0.0171 (6) | 0.0158 (6) | 0.0151 (6) | 0.0000 (4) | −0.0008 (5) | −0.0014 (4) |
N4 | 0.0223 (6) | 0.0224 (6) | 0.0159 (5) | 0.0020 (5) | −0.0023 (4) | −0.0002 (4) |
O41 | 0.0241 (5) | 0.0382 (6) | 0.0230 (5) | −0.0062 (4) | −0.0080 (4) | 0.0028 (4) |
O42 | 0.0335 (6) | 0.0331 (6) | 0.0210 (5) | −0.0007 (4) | −0.0009 (4) | 0.0104 (4) |
N1—C1 | 1.3705 (16) | C4—N4 | 1.4678 (15) |
N1—C2 | 1.3943 (16) | C5—C6 | 1.3895 (19) |
N1—H1 | 0.8167 | C5—H5 | 0.95 |
C1—O1 | 1.2174 (15) | C6—C7 | 1.3928 (18) |
C1—C8 | 1.4933 (16) | C6—H6 | 0.95 |
C2—O2 | 1.2026 (15) | C7—C8 | 1.3832 (17) |
C2—C3 | 1.5063 (17) | C7—H7 | 0.95 |
C3—C4 | 1.3887 (17) | N4—O41 | 1.2231 (15) |
C3—C8 | 1.3954 (17) | N4—O42 | 1.2269 (14) |
C4—C5 | 1.3862 (17) | ||
C1—N1—C2 | 113.38 (10) | C4—C5—C6 | 120.09 (12) |
C1—N1—H1 | 130.4 | C4—C5—H5 | 120.0 |
C2—N1—H1 | 115.6 | C6—C5—H5 | 120.0 |
O1—C1—N1 | 125.29 (12) | C5—C6—C7 | 120.89 (12) |
O1—C1—C8 | 128.54 (12) | C5—C6—H6 | 119.6 |
N1—C1—C8 | 106.16 (10) | C7—C6—H6 | 119.6 |
O2—C2—N1 | 124.13 (12) | C8—C7—C6 | 117.59 (11) |
O2—C2—C3 | 131.00 (12) | C8—C7—H7 | 121.2 |
N1—C2—C3 | 104.86 (10) | C6—C7—H7 | 121.2 |
C4—C3—C8 | 117.96 (11) | C7—C8—C3 | 122.95 (11) |
C4—C3—C2 | 134.26 (12) | C7—C8—C1 | 129.36 (11) |
C8—C3—C2 | 107.74 (10) | C3—C8—C1 | 107.69 (11) |
C5—C4—C3 | 120.51 (11) | O41—N4—O42 | 124.46 (11) |
C5—C4—N4 | 117.36 (11) | O41—N4—C4 | 118.03 (10) |
C3—C4—N4 | 122.12 (11) | O42—N4—C4 | 117.48 (11) |
C2—N1—C1—O1 | 177.46 (12) | C5—C6—C7—C8 | 0.70 (18) |
C2—N1—C1—C8 | −1.07 (14) | C6—C7—C8—C3 | 0.22 (18) |
C1—N1—C2—O2 | 177.25 (12) | C6—C7—C8—C1 | −178.73 (12) |
C1—N1—C2—C3 | −1.49 (14) | C4—C3—C8—C7 | −1.40 (18) |
O2—C2—C3—C4 | 2.5 (2) | C2—C3—C8—C7 | 176.55 (11) |
N1—C2—C3—C4 | −178.89 (13) | C4—C3—C8—C1 | 177.75 (11) |
O2—C2—C3—C8 | −174.98 (14) | C2—C3—C8—C1 | −4.30 (13) |
N1—C2—C3—C8 | 3.63 (13) | O1—C1—C8—C7 | 4.0 (2) |
C8—C3—C4—C5 | 1.68 (18) | N1—C1—C8—C7 | −177.50 (12) |
C2—C3—C4—C5 | −175.60 (13) | O1—C1—C8—C3 | −175.05 (12) |
C8—C3—C4—N4 | −176.64 (11) | N1—C1—C8—C3 | 3.42 (13) |
C2—C3—C4—N4 | 6.1 (2) | C5—C4—N4—O41 | −146.87 (12) |
C3—C4—C5—C6 | −0.82 (19) | C3—C4—N4—O41 | 31.51 (17) |
N4—C4—C5—C6 | 177.58 (11) | C5—C4—N4—O42 | 31.58 (16) |
C4—C5—C6—C7 | −0.41 (19) | C3—C4—N4—O42 | −150.05 (12) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1i | 0.82 | 1.99 | 2.8043 (14) | 176 |
C5—H5···O41ii | 0.95 | 2.56 | 3.4386 (16) | 153 |
C6—H6···O2iii | 0.95 | 2.36 | 3.1639 (16) | 142 |
Symmetry codes: (i) x+1/2, y, −z+1/2; (ii) x−1/2, y, −z+3/2; (iii) x−1, y, z. |
C8H4N2O4 | F(000) = 392 |
Mr = 192.13 | Dx = 1.716 Mg m−3 |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 1007 reflections |
a = 5.3114 (3) Å | θ = 3.3–27.5° |
b = 5.6812 (5) Å | µ = 0.14 mm−1 |
c = 24.645 (2) Å | T = 291 K |
V = 743.67 (10) Å3 | Plate, colourless |
Z = 4 | 0.26 × 0.22 × 0.04 mm |
Nonius KappaCCD diffractometer | 1007 independent reflections |
Radiation source: rotating anode | 804 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.060 |
ϕ scans, and ω scans with κ offsets | θmax = 27.5°, θmin = 3.3° |
Absorption correction: multi-scan (SORTAV; Blessing, 1995, 1997) | h = −6→6 |
Tmin = 0.956, Tmax = 0.994 | k = −7→7 |
6348 measured reflections | l = −31→31 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.043 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.110 | H-atom parameters constrained |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0707P)2 + 0.0553P] where P = (Fo2 + 2Fc2)/3 |
1007 reflections | (Δ/σ)max < 0.001 |
127 parameters | Δρmax = 0.26 e Å−3 |
0 restraints | Δρmin = −0.27 e Å−3 |
C8H4N2O4 | V = 743.67 (10) Å3 |
Mr = 192.13 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 5.3114 (3) Å | µ = 0.14 mm−1 |
b = 5.6812 (5) Å | T = 291 K |
c = 24.645 (2) Å | 0.26 × 0.22 × 0.04 mm |
Nonius KappaCCD diffractometer | 1007 independent reflections |
Absorption correction: multi-scan (SORTAV; Blessing, 1995, 1997) | 804 reflections with I > 2σ(I) |
Tmin = 0.956, Tmax = 0.994 | Rint = 0.060 |
6348 measured reflections |
R[F2 > 2σ(F2)] = 0.043 | 0 restraints |
wR(F2) = 0.110 | H-atom parameters constrained |
S = 1.03 | Δρmax = 0.26 e Å−3 |
1007 reflections | Δρmin = −0.27 e Å−3 |
127 parameters |
x | y | z | Uiso*/Ueq | ||
N1 | 0.8528 (5) | 0.4545 (4) | 0.71294 (9) | 0.0268 (6) | |
C1 | 0.8471 (6) | 0.6382 (5) | 0.67636 (10) | 0.0242 (6) | |
O1 | 0.9844 (4) | 0.8077 (4) | 0.67667 (8) | 0.0306 (5) | |
C2 | 0.6641 (5) | 0.2892 (5) | 0.70364 (11) | 0.0257 (7) | |
O2 | 0.6265 (4) | 0.1134 (4) | 0.73007 (8) | 0.0336 (6) | |
C3 | 0.5294 (5) | 0.3736 (5) | 0.65413 (11) | 0.0236 (6) | |
C4 | 0.3286 (5) | 0.2744 (5) | 0.62623 (11) | 0.0243 (6) | |
C5 | 0.2516 (5) | 0.4022 (5) | 0.58086 (10) | 0.0234 (6) | |
N5 | 0.0417 (5) | 0.3041 (4) | 0.54841 (9) | 0.0277 (6) | |
O51 | −0.0327 (4) | 0.1058 (4) | 0.55967 (9) | 0.0377 (6) | |
O52 | −0.0481 (4) | 0.4261 (4) | 0.51226 (8) | 0.0320 (5) | |
C6 | 0.3542 (6) | 0.6110 (5) | 0.56411 (11) | 0.0251 (6) | |
C7 | 0.5546 (6) | 0.7071 (6) | 0.59283 (11) | 0.0269 (7) | |
C8 | 0.6376 (5) | 0.5839 (5) | 0.63799 (11) | 0.0233 (6) | |
H1 | 0.9573 | 0.4249 | 0.7418 | 0.032* | |
H4 | 0.2521 | 0.1346 | 0.6369 | 0.029* | |
H6 | 0.2904 | 0.6879 | 0.5338 | 0.030* | |
H7 | 0.6296 | 0.8477 | 0.5822 | 0.032* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0289 (13) | 0.0261 (14) | 0.0253 (12) | 0.0008 (12) | −0.0031 (10) | 0.0017 (10) |
C1 | 0.0249 (14) | 0.0240 (15) | 0.0238 (13) | 0.0020 (14) | 0.0031 (11) | −0.0024 (12) |
O1 | 0.0331 (12) | 0.0290 (12) | 0.0298 (10) | −0.0076 (11) | −0.0022 (9) | −0.0014 (9) |
C2 | 0.0290 (15) | 0.0209 (15) | 0.0271 (13) | 0.0023 (14) | 0.0032 (13) | −0.0034 (12) |
O2 | 0.0424 (14) | 0.0260 (11) | 0.0325 (11) | −0.0001 (11) | −0.0002 (9) | 0.0038 (10) |
C3 | 0.0233 (14) | 0.0221 (15) | 0.0253 (12) | 0.0022 (13) | 0.0015 (11) | −0.0028 (13) |
C4 | 0.0238 (14) | 0.0183 (14) | 0.0309 (13) | 0.0003 (13) | 0.0061 (12) | −0.0011 (12) |
C5 | 0.0192 (13) | 0.0264 (16) | 0.0248 (13) | 0.0022 (13) | 0.0009 (11) | −0.0034 (12) |
N5 | 0.0253 (12) | 0.0277 (14) | 0.0300 (12) | −0.0039 (13) | 0.0026 (11) | −0.0034 (12) |
O51 | 0.0387 (12) | 0.0359 (13) | 0.0385 (11) | −0.0171 (12) | −0.0039 (10) | 0.0030 (10) |
O52 | 0.0309 (11) | 0.0337 (13) | 0.0313 (10) | 0.0008 (11) | −0.0061 (9) | 0.0023 (9) |
C6 | 0.0274 (14) | 0.0232 (16) | 0.0246 (13) | 0.0003 (14) | −0.0001 (11) | 0.0009 (12) |
C7 | 0.0286 (15) | 0.0261 (16) | 0.0259 (13) | −0.0014 (14) | −0.0004 (12) | −0.0005 (13) |
C8 | 0.0219 (14) | 0.0238 (16) | 0.0241 (13) | −0.0004 (13) | 0.0015 (11) | −0.0029 (12) |
N1—C1 | 1.379 (4) | C4—H4 | 0.93 |
N1—C2 | 1.392 (4) | C5—C6 | 1.369 (4) |
N1—H1 | 0.92 | C5—N5 | 1.481 (4) |
C1—O1 | 1.208 (3) | N5—O52 | 1.225 (3) |
C1—C8 | 1.493 (4) | N5—O51 | 1.226 (3) |
C2—O2 | 1.209 (3) | C6—C7 | 1.390 (4) |
C2—C3 | 1.494 (4) | C6—H6 | 0.93 |
C3—C8 | 1.384 (4) | C7—C8 | 1.387 (4) |
C3—C4 | 1.388 (4) | C7—H7 | 0.93 |
C4—C5 | 1.395 (4) | ||
C1—N1—C2 | 112.8 (2) | C6—C5—C4 | 125.2 (3) |
C1—N1—H1 | 131.2 | C6—C5—N5 | 117.6 (3) |
C2—N1—H1 | 116.0 | C4—C5—N5 | 117.3 (3) |
O1—C1—N1 | 125.9 (3) | O52—N5—O51 | 124.0 (3) |
O1—C1—C8 | 128.2 (3) | O52—N5—C5 | 118.2 (3) |
N1—C1—C8 | 105.9 (2) | O51—N5—C5 | 117.8 (3) |
O2—C2—N1 | 126.0 (3) | C5—C6—C7 | 119.5 (3) |
O2—C2—C3 | 128.7 (3) | C5—C6—H6 | 120.3 |
N1—C2—C3 | 105.3 (2) | C7—C6—H6 | 120.3 |
C8—C3—C4 | 121.8 (3) | C8—C7—C6 | 117.0 (3) |
C8—C3—C2 | 108.2 (3) | C8—C7—H7 | 121.5 |
C4—C3—C2 | 130.0 (3) | C6—C7—H7 | 121.5 |
C3—C4—C5 | 114.3 (3) | C3—C8—C7 | 122.3 (3) |
C3—C4—H4 | 122.9 | C3—C8—C1 | 107.8 (2) |
C5—C4—H4 | 122.9 | C7—C8—C1 | 129.9 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O2i | 0.92 | 2.55 | 3.231 (3) | 131 |
N1—H1···O1ii | 0.92 | 2.14 | 2.974 (3) | 151 |
C4—H4···O1iii | 0.93 | 2.54 | 3.452 (4) | 168 |
C7—H7···O51iv | 0.93 | 2.38 | 3.257 (4) | 156 |
Symmetry codes: (i) −x+2, y+1/2, −z+3/2; (ii) −x+2, y−1/2, −z+3/2; (iii) x−1, y−1, z; (iv) x+1, y+1, z. |
Experimental details
(I) | (II) | |
Crystal data | ||
Chemical formula | C8H4N2O4 | C8H4N2O4 |
Mr | 192.13 | 192.13 |
Crystal system, space group | Orthorhombic, Pbca | Orthorhombic, P212121 |
Temperature (K) | 120 | 291 |
a, b, c (Å) | 8.2208 (2), 13.0786 (4), 13.9233 (4) | 5.3114 (3), 5.6812 (5), 24.645 (2) |
V (Å3) | 1496.99 (7) | 743.67 (10) |
Z | 8 | 4 |
Radiation type | Mo Kα | Mo Kα |
µ (mm−1) | 0.14 | 0.14 |
Crystal size (mm) | 0.48 × 0.32 × 0.08 | 0.26 × 0.22 × 0.04 |
Data collection | ||
Diffractometer | Bruker-Nonius 95mm CCD camera on κ-goniostat diffractometer | Nonius KappaCCD diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2003) | Multi-scan (SORTAV; Blessing, 1995, 1997) |
Tmin, Tmax | 0.954, 0.989 | 0.956, 0.994 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 19573, 1703, 1488 | 6348, 1007, 804 |
Rint | 0.037 | 0.060 |
(sin θ/λ)max (Å−1) | 0.649 | 0.649 |
Refinement | ||
R[F2 > 2σ(F2)], wR(F2), S | 0.039, 0.099, 1.10 | 0.043, 0.110, 1.03 |
No. of reflections | 1703 | 1007 |
No. of parameters | 129 | 127 |
H-atom treatment | H-atom parameters constrained | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.33, −0.42 | 0.26, −0.27 |
Computer programs: COLLECT (Hooft, 1999), KappaCCD Server Software (Nonius, 1997), DENZO (Otwinowski & Minor, 1997) and COLLECT, DENZO–SMN (Otwinowski & Minor, 1997), DENZO and COLLECT, DENZO–SMN, OSCAIL (McArdle, 2003) and SHELXS97 (Sheldrick, 1997), OSCAIL and SHELXL97 (Sheldrick, 1997), PLATON (Spek, 2003), SHELXL97 and PRPKAPPA (Ferguson, 1999).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1i | 0.82 | 1.99 | 2.8043 (14) | 176 |
C5—H5···O41ii | 0.95 | 2.56 | 3.4386 (16) | 153 |
C6—H6···O2iii | 0.95 | 2.36 | 3.1639 (16) | 142 |
Symmetry codes: (i) x+1/2, y, −z+1/2; (ii) x−1/2, y, −z+3/2; (iii) x−1, y, z. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O2i | 0.92 | 2.55 | 3.231 (3) | 131 |
N1—H1···O1ii | 0.92 | 2.14 | 2.974 (3) | 151 |
C4—H4···O1iii | 0.93 | 2.54 | 3.452 (4) | 168 |
C7—H7···O51iv | 0.93 | 2.38 | 3.257 (4) | 156 |
Symmetry codes: (i) −x+2, y+1/2, −z+3/2; (ii) −x+2, y−1/2, −z+3/2; (iii) x−1, y−1, z; (iv) x+1, y+1, z. |
Acknowledgements
The authors thank a referee for helpful comments on conformational
X-ray data were collected at the EPSRC X-ray Crystallographic Service, University of Southampton, England; the authors thank the staff for all their help and advice. JNL thanks NCR Self-Service, Dundee, for grants which have provided computing facilities for this work. JLW thanks CNPq and FAPERJ for financial support.References
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The isomeric compounds 3-nitrophthalimide, (I), and 4-nitrophthalimide, (II), contain, within very compact molecules, a wide variety of potential hydrogen-bond donors and acceptors (Fig. 1). Both N—H and C—H bonds provide potential donors, while carbonyl O and nitro O atoms and the arene ring all provide potential acceptors, although there is a significant excess of hard (Braga et al., 1995; Desiraju & Steiner, 1999) acceptors over hard donors. In addition, aromatic π–π stacking interactions and non-bonded dipolar interactions (Allen et al., 1998) involving both carbonyl and nitro groups are possible in principle.
In the event, the supramolecular structure of (I) (Fig. 1) is dominated by a two-centre N—H···O hydrogen bond, in which the acceptor is a carbonyl O atom, and two independent C—H···O hydrogen bonds, one involving a carbonyl O and the other a nitro O atom as acceptor. By contrast, the supramolecular structure of (II) (Fig. 2) is dominated by one rather asymmetric three-centre N—H···(O)2 hydrogen bond, involving both of the carbonyl O atoms as the acceptors, and two independent two-centre C—H···O hydrogen bonds, one involving a carbonyl O and the other a nitro O atom as acceptor.
In isomer (I), each of the independent hydrogen bonds (Table 1) can be regarded as producing a one-dimensional sub-structure (Gregson et al., 2000), all parallel to the [100] direction but all generated by different symmetry operations; the combination of these three motifs generates a sheet. The formation of the sheets in (I) is most readily analysed by considering in turn the action of each hydrogen bond. Amine atom N1 in the molecule at (x, y, z) acts as a hydrogen-bond donor to carbonyl atom O1 in the molecule at (0.5 + x, y, 0.5 − z), so producing a C(4) chain running parallel to the [100] direction and generated by the a-glide plane at z = 0.25 (Fig. 3).
At the same time, aryl atom C6 in the molecule at (x, y, z) acts as a hydrogen-bond donor to the second carbonyl O atom, O2, in the molecule at (−1 + x, y, z), thus generating by translation a C(7) chain along [100]; the combination of the two motifs having carbonyl acceptors generates a column of R33(14) rings across z = 0.25 (Fig. 3). Finally, aryl atom C5 at (x, y, z) acts as a hydrogen-bond donor to nitro atom O41 in the molecule at (−0.5 + x, y, 1.5 − z), so forming a C(5) chain along [100], this time generated by the a-glide plane at z = 0.75; the combination of the two motifs involving aryl H atoms generates a column of R33(15) rings across z = 0.75 (Fig. 3). Neither of the rings utilizes all three independent hydrogen bonds. However, the combination of all three hydrogen bonds generates a (010) sheet in which columns of R33(14) rings across z = n + 0.25 (n = zero or integer) alternate with columns of R33(15) rings across z = n + 0.75 (n = zero or integer) (Fig. 3). Four sheets of this type pass through each unit cell, and the sheets are weakly linked into pairs by a single aromatic π–π stacking interaction.
The C3–C8 aryl rings in the molecules at (x, y, z) and (-x, −y, 1 − z) are strictly parallel, with an interplanar spacing of 3.309 (2) Å; the ring-centroid separation is 3.758 (2) Å, corresponding to a centroid offset of 1.781 (2) Å (Fig. 4). These two molecules lie in the (010) sheets within the domains 0.02 < y < 0.31 and −0.21 < y < −0.02, respectively, and these two sheets are thus linked into a bilayer. The formation of the bilayer is reinforced by a dipolar interaction between the negatively polarized nitro atom O42 in the molecule at (x, y, z) and the positively polarized carbonyl atom C1 in the molecule at (0.5 − x, −y, 0.5 + z), which forms part of the sheet in the domain −0.21 < y < −0.02. The C···Oi distance [symmetry code: (i) 0.5 − x, −y, 0.5 + z] is 2.980 (2) Å and the C···Oi—Ni angle is 135.9 (2)°. However, there are no direction-specific interactions between adjacent bilayers
In isomer (II), the hard and soft hydrogen bonds independently generate two one-dimensional sub-structures, each in the form of a chain of rings, and these chains combine to form sheets. Amine atom N1 in the molecule of (II) at (x, y, z) acts as a hydrogen-bond donor to carbonyl atoms O1 and O2 in the molecules at (2 − x, −0.5 + y, 1.5 − z) and (2 − x, 0.5 + y, 1.5 − z), respectively. These two interactions (Table 2) are the strong and weak components of a markedly-asymmetric, but essentially planar, three-centre interaction. The sum of the angles at atom H1 is 358°. Together these interactions produce a chain of edge-fused R22(8) rings running parallel to the [010] direction and generated by the 21 screw axis along (1, y, 3/4) (Fig. 5).
In addition, aryl atoms C4 and C7 in the molecule at (x, y, z) act as donors, respectively, to atoms O1 and O51 in the molecules at (−1 + x, −1 + y, z) and (1 + x, 1 + y, z), so generating two individual C(6) chains, whose combined action generates by translation a C(6) C(6)[R22(10)] chain of rings (Bernstein et al., 1995) running parallel to the [110] direction (Fig. 6). The combination of the [010] and [110] chains generates a (001) sheet, which is modestly reinforced by a dipolar interaction between the negatively polarized atom O2 at (x, y, z) and the positively polarized atom C2 at (1 − x, −0.5 + y, 1.5 − z). The O2···C2ii distance is 2.906 (3) Å [symmetry code: (ii) 1 − x, −0.5 + y, 1.5 − z] and the C2—O2···C2ii angle is 156.1 (2)°, indicating an interaction whose geometry is intermediate between the perpendicular motif (I) and the sheared motif (III) described by Allen et al. (1998). The two molecules involved in this interaction lie in the [010] chains along (1, y, 3/4) and (1/2, y, 3/4), so that this dipolar interaction generates a motif along [100] within the (010) sheet. There are no direction-specific interactions between adjacent sheets.
The bond distances and angles within the molecules of (I) and (II) present no unusual values. The dihedral angle between the planes of the aryl ring and the nitro group is 31.6 (2)° in (I) and 8.0 (2)° in (II), so that each molecule has point group C1; this is sufficient to render the molecules of both isomers chiral. Isomer (I) crystallizes in the centrosymmetric space group Pbca, as a racemate with equal numbers of both conformational enantiomers present in each single-crystal domain. Isomer (II) crystallizes in space group P212121 as a fully ordered structure, having only one conformational enantiomer present in each single-crystal domain.