organic compounds
4-Nitrophenyl phenyl ether: sheets built from C—H⋯O and C—H⋯π(arene) hydrogen bonds
aSchool of Chemistry, University of St Andrews, Fife KY16 9ST, Scotland, bDepartment of Chemistry, University of Aberdeen, Meston Walk, Old Aberdeen AB24 3UE, Scotland, and cInstituto de Química, Departamento de Química Inorgânica, Universidade Federal do Rio de Janeiro, 21945-970 Rio de Janeiro, RJ, Brazil
*Correspondence e-mail: cg@st-andrews.ac.uk
In the title compound, C12H9NO3, the ether C—O—C angle is 119.65 (10)°. The molecules are linked into sheets by a combination of C—H⋯O and C—H⋯π(arene) hydrogen bonds, reinforced by an aromatic π–π stacking interaction.
Comment
We report here the molecular and supramolecular structure of the title compound, (I) (Fig. 1), a simple substituted analogue of the low-melting-point parent compound biphenyl ether, Ph2O (m.p. ca 300 K), the structure of which does not appear in the Cambridge Structural Database (January 2005 release; Allen, 2002). The C—O distance to the substituted ring in (I) is significantly the shorter of the two C—O distances (Table 1), but the mean C—C distances for the two aryl rings are identical within experimental uncertainty. The C—O—C angle is strikingly larger than those typically found in water and simple which are just below the idealized tetrahedral value. The value of this angle in (I) may be compared with the corresponding C—O—C angle of 127.9 (1)° in Ph3C—O—CPh3 (Glidewell & Liles, 1978). Associated with this large angle is the concerted twist of the aryl rings away from the central C—O—C plane, as indicated by the relevant torsion angles. The dihedral angle between the ring planes is 63.2 (2)°. These geometric features are most readily ascribed to the avoidance of the mutual repulsion between the ortho H atoms bonded to atoms C2 and C16 (Fig. 1).
The molecules of (I) are linked into sheets by a combination of one C—H⋯O hydrogen bond and one C—H⋯π(arene) hydrogen bond, and these sheets are reinforced by an aromatic π–π stacking interaction. Aryl atom C6 in the molecule at (x, y, z) acts as hydrogen-bond donor to nitro atom O42 in the molecule at (1 − x, y − , − z), so producing a C(6) (Bernstein et al., 1995) chain running parallel to the [010] direction and generated by the 21 screw axis along (, y, ) (Fig. 2). A similar chain, antiparallel to the first and related to it by inversion, is generated by the 21 screw axis along (, −y, ), and these chains are linked by the C—H⋯π(arene) hydrogen bond.
Aryl atom C2 in the molecule at (x, y, z), which forms part of the chain along (, y, ), acts as hydrogen-bond donor to the unsubstituted C11–C16 ring in the molecule at (x, − y, + z), which lies in the chain along (, −y, ). In this manner, a second chain motif is produced, running parallel to the [001] direction and generated by the c-glide plane at y = (Fig. 3). The combination of the [010] and [001] chains generates a (100) chain in the form of a (4,4)-net (Batten & Robson, 1998) built from a single type of ring (Fig. 4). Just one sheet of this type passes through each unit cell.
A single aromatic π–π stacking interaction reinforces the sheet. The C1–C6 rings in the molecules at (x, y, z) and (1 − x, 1 − y, 1 − z) are strictly parallel and these molecules lie in the same sheet. The between these molecules is 3.296 (2) Å and the ring–centroid separation is 3.695 (2) Å, corresponding to a centroid offset of 1.670 (2) Å (Fig. 5). There are no direction-specific interactions between adjacent (100) sheets.
Experimental
A sample of the title compound was obtained from Aldrich. Crystals suitable for single-crystal X-ray diffraction were grown by slow evaporation of a solution in ethanol.
Crystal data
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Refinement
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The P21/c was uniquely assigned from the All H atoms were located from difference maps and then treated as riding atoms, with C—H distances of 0.95 Å and with Uiso(H) = 1.2Ueq(C).
Data collection: COLLECT (Hooft, 1999); cell DENZO (Otwinowski & Minor, 1997) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: OSCAIL for Windows (McArdle, 2003) and SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: OSCAIL and SHELXL97 (Sheldrick, 1997); molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: SHELXL97 and PRPKAPPA (Ferguson, 1999).
Supporting information
10.1107/S0108270105002076/sk1810sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S0108270105002076/sk1810Isup2.hkl
A sample of the title compound was obtained from Aldrich. Crystals of (I) suitable for single-crystal X-ray diffraction were grown by slow evaporation of a solution in ethanol.
The
P21/c was uniquely assigned from the All H atoms were located from difference maps and then treated as riding atoms, with C—H distances of 0.95 Å and with Uiso(H) = 1.2Ueq(C).Data collection: COLLECT (Hooft, 1999); cell
DENZO (Otwinowski & Minor, 1997) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: OSCAIL (McArdle, 2003) and SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: OSCAIL and SHELXL97 (Sheldrick, 1997); molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: SHELXL97 and PRPKAPPA (Ferguson, 1999).C12H9NO3 | F(000) = 448 |
Mr = 215.20 | Dx = 1.425 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 2285 reflections |
a = 10.3300 (5) Å | θ = 3.1–27.5° |
b = 12.2408 (4) Å | µ = 0.10 mm−1 |
c = 7.9804 (4) Å | T = 120 K |
β = 96.215 (2)° | Shard, colourless |
V = 1003.17 (8) Å3 | 0.34 × 0.18 × 0.09 mm |
Z = 4 |
Nonius KappaCCD area-detector diffractometer | 2285 independent reflections |
Graphite monochromator | 1644 reflections with I > 2σ(I) |
Detector resolution: 9.091 pixels mm-1 | Rint = 0.045 |
ϕ and ω scans | θmax = 27.5°, θmin = 3.1° |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | h = −13→13 |
Tmin = 0.955, Tmax = 0.991 | k = −15→15 |
11250 measured reflections | l = −10→9 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.042 | H-atom parameters constrained |
wR(F2) = 0.113 | w = 1/[σ2(Fo2) + (0.0619P)2 + 0.0313P] where P = (Fo2 + 2Fc2)/3 |
S = 1.04 | (Δ/σ)max < 0.001 |
2285 reflections | Δρmax = 0.22 e Å−3 |
146 parameters | Δρmin = −0.29 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 1997), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.018 (3) |
C12H9NO3 | V = 1003.17 (8) Å3 |
Mr = 215.20 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 10.3300 (5) Å | µ = 0.10 mm−1 |
b = 12.2408 (4) Å | T = 120 K |
c = 7.9804 (4) Å | 0.34 × 0.18 × 0.09 mm |
β = 96.215 (2)° |
Nonius KappaCCD area-detector diffractometer | 2285 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | 1644 reflections with I > 2σ(I) |
Tmin = 0.955, Tmax = 0.991 | Rint = 0.045 |
11250 measured reflections |
R[F2 > 2σ(F2)] = 0.042 | 0 restraints |
wR(F2) = 0.113 | H-atom parameters constrained |
S = 1.04 | Δρmax = 0.22 e Å−3 |
2285 reflections | Δρmin = −0.29 e Å−3 |
146 parameters |
x | y | z | Uiso*/Ueq | ||
O1 | 0.36142 (9) | 0.31179 (7) | 0.32222 (13) | 0.0236 (3) | |
O41 | 0.22322 (10) | 0.78372 (8) | 0.54552 (14) | 0.0310 (3) | |
O42 | 0.38921 (10) | 0.81782 (8) | 0.41061 (15) | 0.0325 (3) | |
N4 | 0.31209 (11) | 0.75386 (9) | 0.46511 (16) | 0.0224 (3) | |
C1 | 0.34314 (12) | 0.42031 (10) | 0.35927 (17) | 0.0193 (3) | |
C2 | 0.25253 (12) | 0.45470 (11) | 0.46435 (18) | 0.0215 (3) | |
C3 | 0.24360 (13) | 0.56507 (11) | 0.50037 (18) | 0.0214 (3) | |
C4 | 0.32547 (12) | 0.63742 (10) | 0.43173 (17) | 0.0195 (3) | |
C5 | 0.41804 (12) | 0.60360 (11) | 0.32985 (18) | 0.0210 (3) | |
C6 | 0.42682 (12) | 0.49404 (11) | 0.29330 (18) | 0.0204 (3) | |
C11 | 0.25903 (12) | 0.23800 (10) | 0.32812 (18) | 0.0200 (3) | |
C12 | 0.28895 (14) | 0.13855 (11) | 0.40378 (17) | 0.0224 (3) | |
C13 | 0.19265 (14) | 0.05949 (11) | 0.40325 (18) | 0.0265 (4) | |
C14 | 0.06804 (14) | 0.08090 (12) | 0.32944 (19) | 0.0280 (4) | |
C15 | 0.03923 (14) | 0.18169 (12) | 0.25384 (19) | 0.0262 (4) | |
C16 | 0.13495 (13) | 0.26051 (11) | 0.25177 (19) | 0.0234 (3) | |
H2 | 0.1974 | 0.4034 | 0.5109 | 0.026* | |
H3 | 0.1819 | 0.5905 | 0.5714 | 0.026* | |
H5 | 0.4745 | 0.6550 | 0.2859 | 0.025* | |
H6 | 0.4896 | 0.4690 | 0.2235 | 0.024* | |
H12 | 0.3745 | 0.1243 | 0.4556 | 0.027* | |
H13 | 0.2125 | −0.0096 | 0.4538 | 0.032* | |
H14 | 0.0021 | 0.0269 | 0.3303 | 0.034* | |
H15 | −0.0466 | 0.1964 | 0.2034 | 0.031* | |
H16 | 0.1159 | 0.3290 | 0.1988 | 0.028* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0204 (5) | 0.0176 (5) | 0.0334 (6) | −0.0013 (4) | 0.0060 (4) | −0.0014 (4) |
O41 | 0.0293 (5) | 0.0258 (6) | 0.0397 (7) | 0.0011 (4) | 0.0114 (5) | −0.0047 (5) |
O42 | 0.0318 (6) | 0.0213 (5) | 0.0458 (7) | −0.0067 (4) | 0.0104 (5) | 0.0031 (5) |
N4 | 0.0210 (6) | 0.0210 (6) | 0.0251 (7) | −0.0015 (5) | 0.0015 (5) | 0.0014 (5) |
C1 | 0.0191 (6) | 0.0178 (7) | 0.0204 (8) | 0.0005 (5) | −0.0009 (6) | 0.0003 (5) |
C2 | 0.0215 (7) | 0.0208 (7) | 0.0227 (8) | −0.0025 (5) | 0.0041 (6) | 0.0032 (6) |
C3 | 0.0193 (7) | 0.0246 (7) | 0.0204 (8) | 0.0018 (5) | 0.0033 (6) | 0.0017 (6) |
C4 | 0.0200 (7) | 0.0170 (7) | 0.0206 (8) | 0.0011 (5) | −0.0015 (6) | −0.0003 (6) |
C5 | 0.0187 (6) | 0.0230 (7) | 0.0209 (8) | −0.0030 (6) | 0.0000 (6) | 0.0042 (6) |
C6 | 0.0172 (6) | 0.0237 (7) | 0.0204 (8) | −0.0003 (5) | 0.0028 (6) | −0.0003 (6) |
C11 | 0.0208 (7) | 0.0186 (7) | 0.0214 (8) | −0.0022 (5) | 0.0063 (6) | −0.0027 (5) |
C12 | 0.0238 (7) | 0.0231 (7) | 0.0204 (8) | 0.0039 (6) | 0.0035 (6) | −0.0005 (6) |
C13 | 0.0383 (9) | 0.0185 (7) | 0.0238 (9) | 0.0009 (6) | 0.0086 (7) | 0.0007 (6) |
C14 | 0.0300 (8) | 0.0251 (8) | 0.0303 (9) | −0.0081 (6) | 0.0104 (7) | −0.0064 (6) |
C15 | 0.0215 (7) | 0.0288 (8) | 0.0283 (9) | −0.0020 (6) | 0.0034 (6) | −0.0038 (6) |
C16 | 0.0250 (7) | 0.0225 (7) | 0.0231 (8) | 0.0024 (6) | 0.0042 (6) | 0.0003 (6) |
O1—C1 | 1.3783 (15) | N4—O41 | 1.2311 (15) |
C1—C2 | 1.3880 (19) | O1—C11 | 1.3955 (15) |
C1—C6 | 1.3919 (19) | C11—C12 | 1.3790 (18) |
C2—C3 | 1.3864 (19) | C11—C16 | 1.3860 (19) |
C2—H2 | 0.95 | C12—C13 | 1.3875 (19) |
C3—C4 | 1.3784 (19) | C12—H12 | 0.95 |
C3—H3 | 0.95 | C13—C14 | 1.382 (2) |
C4—C5 | 1.3839 (19) | C13—H13 | 0.95 |
C4—N4 | 1.4593 (17) | C14—C15 | 1.391 (2) |
C5—C6 | 1.3775 (19) | C14—H14 | 0.95 |
C5—H5 | 0.95 | C15—C16 | 1.3829 (19) |
C6—H6 | 0.95 | C15—H15 | 0.95 |
N4—O42 | 1.2296 (15) | C16—H16 | 0.95 |
O1—C1—C2 | 122.61 (12) | O41—N4—C4 | 118.41 (11) |
O1—C1—C6 | 116.02 (12) | C1—O1—C11 | 119.65 (10) |
C2—C1—C6 | 121.26 (12) | C12—C11—C16 | 121.39 (13) |
C3—C2—C1 | 119.02 (12) | C12—C11—O1 | 116.83 (12) |
C3—C2—H2 | 120.5 | C16—C11—O1 | 121.65 (12) |
C1—C2—H2 | 120.5 | C11—C12—C13 | 119.19 (13) |
C4—C3—C2 | 119.10 (13) | C11—C12—H12 | 120.4 |
C4—C3—H3 | 120.4 | C13—C12—H12 | 120.4 |
C2—C3—H3 | 120.4 | C14—C13—C12 | 120.24 (13) |
C3—C4—C5 | 122.27 (12) | C14—C13—H13 | 119.9 |
C3—C4—N4 | 118.73 (12) | C12—C13—H13 | 119.9 |
C5—C4—N4 | 118.98 (12) | C13—C14—C15 | 119.92 (13) |
C6—C5—C4 | 118.76 (12) | C13—C14—H14 | 120.0 |
C6—C5—H5 | 120.6 | C15—C14—H14 | 120.0 |
C4—C5—H5 | 120.6 | C16—C15—C14 | 120.28 (13) |
C5—C6—C1 | 119.56 (13) | C16—C15—H15 | 119.9 |
C5—C6—H6 | 120.2 | C14—C15—H15 | 119.9 |
C1—C6—H6 | 120.2 | C15—C16—C11 | 118.97 (13) |
O42—N4—O41 | 122.93 (11) | C15—C16—H16 | 120.5 |
O42—N4—C4 | 118.65 (11) | C11—C16—H16 | 120.5 |
O1—C1—C2—C3 | 177.57 (11) | C5—C4—N4—O41 | 174.73 (12) |
C6—C1—C2—C3 | 1.6 (2) | C2—C1—O1—C11 | 26.75 (19) |
C1—C2—C3—C4 | −0.4 (2) | C6—C1—O1—C11 | −157.09 (12) |
C2—C3—C4—C5 | −1.0 (2) | C1—O1—C11—C12 | −136.55 (13) |
C2—C3—C4—N4 | 177.71 (12) | C1—O1—C11—C16 | 47.64 (18) |
C3—C4—C5—C6 | 1.3 (2) | C16—C11—C12—C13 | 0.0 (2) |
N4—C4—C5—C6 | −177.47 (11) | O1—C11—C12—C13 | −175.80 (12) |
C4—C5—C6—C1 | −0.1 (2) | C11—C12—C13—C14 | −0.8 (2) |
O1—C1—C6—C5 | −177.58 (12) | C12—C13—C14—C15 | 0.6 (2) |
C2—C1—C6—C5 | −1.4 (2) | C13—C14—C15—C16 | 0.2 (2) |
C3—C4—N4—O42 | 176.54 (12) | C14—C15—C16—C11 | −0.9 (2) |
C5—C4—N4—O42 | −4.66 (19) | C12—C11—C16—C15 | 0.8 (2) |
C3—C4—N4—O41 | −4.06 (19) | O1—C11—C16—C15 | 176.43 (13) |
D—H···A | D—H | H···A | D···A | D—H···A |
C6—H6···O42i | 0.95 | 2.54 | 3.4033 (17) | 152 |
C2—H2···Cgii | 0.95 | 2.71 | 3.428 (2) | 134 |
Symmetry codes: (i) −x+1, y−1/2, −z+1/2; (ii) x, −y+1/2, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C12H9NO3 |
Mr | 215.20 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 120 |
a, b, c (Å) | 10.3300 (5), 12.2408 (4), 7.9804 (4) |
β (°) | 96.215 (2) |
V (Å3) | 1003.17 (8) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.34 × 0.18 × 0.09 |
Data collection | |
Diffractometer | Nonius KappaCCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2003) |
Tmin, Tmax | 0.955, 0.991 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 11250, 2285, 1644 |
Rint | 0.045 |
(sin θ/λ)max (Å−1) | 0.649 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.042, 0.113, 1.04 |
No. of reflections | 2285 |
No. of parameters | 146 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.22, −0.29 |
Computer programs: COLLECT (Hooft, 1999), DENZO (Otwinowski & Minor, 1997) and COLLECT, DENZO and COLLECT, OSCAIL (McArdle, 2003) and SHELXS97 (Sheldrick, 1997), OSCAIL and SHELXL97 (Sheldrick, 1997), PLATON (Spek, 2003), SHELXL97 and PRPKAPPA (Ferguson, 1999).
O1—C1 | 1.3783 (15) | O1—C11 | 1.3955 (15) |
C1—O1—C11 | 119.65 (10) | ||
C2—C1—O1—C11 | 26.75 (19) | C1—O1—C11—C16 | 47.64 (18) |
D—H···A | D—H | H···A | D···A | D—H···A |
C6—H6···O42i | 0.95 | 2.54 | 3.4033 (17) | 152 |
C2—H2···Cgii | 0.95 | 2.71 | 3.428 (2) | 134 |
Symmetry codes: (i) −x+1, y−1/2, −z+1/2; (ii) x, −y+1/2, z+1/2. |
Acknowledgements
The X-ray data were collected at the EPSRC X-ray Crystallographic Service, University of Southampton, England; the authors thank the staff for all their help and advice. JNL thanks NCR Self-Service, Dundee, for grants which have provided computing facilities for this work. JLW thanks CNPq and FAPERJ for financial support.
References
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We report here the molecular and supramolecular structure of the title compound, (I), (Fig. 1), a simple substituted analogue of the low-melting-point parent compound biphenyl ether, Ph2O (m.p. ca 300 K), the structure of which does not appear in the January 2005 release of the Cambridge Structural Database (Allen, 2002). The C—O distance to the substituted ring in (I) is significantly the shorter of the two C—O distances (Table 1), but the mean C—C distances for the two aryl rings are identical within experimental uncertainty. The C—O—C angle is strikingly larger than those typically found in water and simple ethers, which are just below the idealized tetrahedral value. The value of this angle in (I) may be compared with the corresponding C—O—C angle of 127.9 (1)° in Ph3C—O—CPh3 (Glidewell & Liles, 1978). Associated with this large angle is the concerted twist of the aryl rings away from the central C—O—C plane, as indicated by the relevant torsional angles. The dihedral angle between the ring planes is 63.2 (2)°. These geometric features are most readily ascribed to the avoidance of the mutual repulsion between the ortho H atoms bonded to C2 and C16 (Fig. 1).
The molecules of (I) are linked into sheets by a combination of one C—H···O hydrogen bond and one C—H···π(arene) hydrogen bond, and these sheets are reinforced by an aromatic π–π stacking interaction. Aryl atom C6 in the molecule at (x, y, z) acts as hydrogen-bond donor to nitro atom O42 in the molecule at (1 − x, y − 1/2, 1/2 − z), so producing a C(6) (Bernstein et al., 1995) chain running parallel to the [010] direction and generated by the 21 screw axis along (1/2, y, 1/4) (Fig. 2). A similar chain, antiparallel to the first and related to it by inversion, is generated by the 21 screw axis along (1/2, −y, 3/4), and these chains are linked by the C—H···π(arene) hydrogen bond.
Aryl atom C2 in the molecule at (x, y, z), which forms part of the chain along (1/2, y, 1/4), acts as hydrogen-bond donor to the unsubstituted C11–C16 ring in the molecule at (x, 1/2 − y, 1/2 + z), which lies in the chain along (1/2, −y, 3/4). In this manner, a second chain motif is produced, running parallel to the [001] direction and generated by the c-glide plane at y = 1/4 (Fig. 3). The combination of the [010] and [001] chains generates a (100) chain in the form of a (4,4) net (Batten & Robson, 1998) built from a single type of ring (Fig. 4). Just one sheet of this type passes through each unit cell.
A single aromatic π–π stacking interaction reinforces the sheet. The C1–C6 rings in the molecules at (x, y, z) and (1 − x, 1 − y, 1 − z) are strictly parallel and these molecules lie in the same sheet. The interplanar spacing between these molecules is 3.296 (2) Å and the ring–centroid separation is 3.695 (2) Å, corresponding to a centroid offset of 1.670 (2) Å (Fig. 5). There are no direction-specific interactions between adjacent (100) sheets.