research papers\(\def\hfill{\hskip 5em}\def\hfil{\hskip 3em}\def\eqno#1{\hfil {#1}}\)

Journal logoSTRUCTURAL
CHEMISTRY
ISSN: 2053-2296

Effect of mol­ecular perturbation on co­crys­tal formation: theo­phyl­line and its 8-halo analogues with flavonoids

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aDepartment of Chemistry, The Hong Kong University of Science and Technology, Clear Water Bay, Hong Kong SAR, People's Republic of China
*Correspondence e-mail: [email protected]

Edited by T. Ohhara, J-PARC Center, Japan Atomic Energy Agency, Japan (Received 10 March 2026; accepted 23 June 2026; online 7 July 2026)

The tendency for co­crys­tal formation between alkaloids and flavonoids is found to be quite common (around 30%) and based on the optimization of hy­dro­gen-bond formation between the acceptor-rich alkaloids and donor-rich flavonoids. Within each mol­ecular family there is substantial variation in co­crys­tal tendency, leading to considerable scope for selective co­crys­tal precipitation to assist in the separation of com­plex mixtures of these natural product families. Theophylline (C7H8N4O2) follows caffeine and theacrine in forming a substantial number of flavonoid co­crys­tals – six in total, of which three were reported previously. By contrast, the 8-halo-substituted analogues 8-X-Tph [X = Cl (C7H7ClN4O2), Br (C7H7BrN4O2)] form co­crys­tals with just myricetin (C15H10O8) and kaempferol (C15H10O6). Weakening of the acceptor capability of the alkaloid N9 atom upon proximal halo substitution may play a role in the reduced tendency of 8-X-Tph towards co­crys­tal formation, since improved packing efficiency is not a key factor in the formation of these co­crys­tals. Most of the co­crys­tal phases may be conveniently prepared with good yield and purity through either liquid-assisted grinding (LAG) or microwave-assisted co­crys­tallization from 1-butanol.

1. Introduction

The formation of co­crys­tals of natural products has been of considerable recent inter­est. For those mol­ecules with bioactivity that can be considered as pharmaceuticals, there is the associated inter­est of potential improvement in oral delivery, enhanced dissolution, bioavailability, solid-state stability, mechanical properties, tabletability, hygroscopic properties and avoidance of hydrate formation (Trask et al., 2005View full citation; Good & Rodríguez-Hornedo, 2009View full citation; Chadha et al., 2017View full citation; Zhu et al., 2017View full citation). Cocrystals may also have important intellectual property implications (Sharma et al., 2025View full citation). The report that co­crys­tal formation between caffeine and various flavonoids could lead to their enhanced separation via green technology based on differential solubility of the co­crys­tals was intriguing (Xia et al., 2021View full citation). If such natural product mixtures could be separated based on dif­ferences in co­crys­tal solubility, how much more effective if the mixture was subject to a differential tendency to form such co­crys­tals in the first place? We thus investigated the general tendency of alkaloids to form crystals with flavonoids in a survey of co-former pairs. This was done relatively efficiently by screening for co­crys­tal formation via a liquid-assisted grinding (LAG) ap­proach (Trask & Jones, 2005View full citation). This was helpful in screening for co­crys­tal formation between the highly potent anti­malarial agent 11-aza­ar­tem­is­in­in with a variety of coformers, including many carb­oxy­lic acids (Nisar et al., 2018View full citation; Roy et al., 2021View full citation; Li et al., 2022View full citation). Successful co­crys­tal formation is quickly checked by running powder X-ray diffractograms of the resulting powders after co-grinding for several hours. This practically ensures that for successful combinations, when a change in the powder X-ray diffraction (PXRD) pattern is observed, the resulting co­crys­tals represent thermodynamically preferred solid forms.

In order to find the structure and stoichiometry of such co­crys­tal products, a rational and consistent crystallization ap­proach was also sought that could be rapidly tested and applied to successful coformer pair combinations. After various efforts, a standard methodology of heating/cooling aqueous methano­lic solutions over a period of 6–12 h was adopted. The result for around 250 total combinations of common alkaloids and common flavonoids is that 75 co­crys­tal phases were readily isolable and have been characterized by single-crystal X-ray structure determination (Ye, 2024View full citation).

In this article, we report the com­parative results of co­crys­tal formation with flavonoids for the alkaloid theo­phyl­line com­pared to its 8-halo analogues (Fig. 1[link]). Recently, we reported the crystal structures of 8-Cl-Tph and 8-Br-Tph, and found four unreported forms that were structurally distinct from the polymorphs of the parent theo­phyl­line (Ye et al., 2025View full citation). The marked switch of structure types appeared strongly linked to the electronic modification of the Tph mol­ecule upon introduction of the 8-halo substituent. This renders the resulting protonated cations [Tph-H]+ more acidic, but also lowers the basicity of the ring N9 atom that is adjacent to the halo substitution site. This apparently leads to a switch of polymorph hy­dro­gen-bond preference from N—H⋯N found in most Tph polymorphs to N—H⋯O found in 8-X-Tph. We were curious to explore whether this electronic perturbation, which was supported by our DFT calculations, might also effect co­crys­tal formation for these related alkaloids.

[Figure 1]
Figure 1
Structural scheme for theo­phyl­lines (13) and flavonoids (af) used in the co­crys­tal phases.

The co­crys­tals reported here are: theo­phyl­line–kaempferol (1/1) (1a), theo­phyl­line–myricetin–water (2/2/1) (1c), theo­phyl­line–rac-hesperetin (2/1) (1e), 8-chloro­theo­phyl­line–kaempferol (1/1) (2a), 8-chloro­theo­phyl­line–myricetin (1/1) (2c), 8-bromo­theo­phyl­line–kaempferol (3a), 8-bromo­theo­phyl­line–myricetin (1/1) (3c), 8-bromo­theo­phyl­line–kaempferol–methanol (1/1/1) (3a′). We also report the previously unpublished structure of kaempferol monohydrate (a·H2O).

2. Experimental

2.1. Isolation and crystallization

2.1.1. General

The theo­phyl­line alkaloids (13), flavonoids (af) (Fig. 1[link]) and solvents used were of reagent grade supplied by Meryer Chemicals or TCI Chemicals (Shanghai) with the following details: (1) theo­phyl­line, 99%, CAS 58-55-9, C7H8N4O2, Mr 180.17; (2) 8-chloro­theo­phyl­line, >98%, CAS 85-18-7, C7H7ClN4O2, Mr 214.61; (3) 8-bromo­theo­phyl­line, 97%, CAS 10381-75-6, C7H7BrN4O2, Mr 259.06. Flavonoids resulting in the successful isolation of co­crys­tals are shown in Fig. 1[link] and are: (a) kaempferol hydrate, 98%, CAS 520-18-3, C15H10O6·xH2O, Mr 286.24 (anhydrous); (b) quercetin dihydrate, 97%, CAS 6151-25-3, C15H10O7·2H2O, Mr 338.27; (c) myricetin, 97%, CAS 529-44-2, C15H10O8, Mr 318.24; (d) baicalein, 98%, CAS 491-67-8, C15H10O5, Mr 270.24; (e) rac-hesperetin, >97%, CAS 520-33-2, C16H14O6, Mr 302.28; (f) rac-di­hydro­myricetin, 97%, CAS 27200-12-0, C15H12O8, Mr 320.25. The use of the flavonoids fisetin, luteolin, genistein, naringenin, biochanin a, chrysin or rutin was unsuccessful for co­crys­tal formation with these theo­phyl­line alkaloids.

2.1.2. Cocrystal screening and growth

Screening for co­crys­tallization between alkaloids 8-X-Tph (X = H, Br, Cl) and flavonoids was carried out by the LAG of 1:1 mixtures (Trask & Jones, 2005View full citation). Grinding used a Tencan XQM-0.4A mini-planetary ball mill with zirconia vessels and media (Nisar et al., 2018View full citation). A minimal amount of methanol (η factor = 0.2 ml g−1) was used to accelerate the solid-state transformations, which typically took between 30 min and 2 h.

Single crystals of alkaloid–flavonoid co­crys­tal phases were also grown by a standard ap­proach of solvothermal co­crys­tallization (Karimi-Jafari et al., 2018View full citation) using 0.25 mmol each of the alkaloid (45–65 mg) with the flavonoid (70–85 mg) in aqueous methanol com­prising 2 ml MeOH and 0.1 ml H2O. Solutions were heated in 23 ml Teflon-lined Parr-type pressure vessels at 120 °C and under autogenous pressure for 12–24 h, followed by slow cooling back to ambient conditions. Solids were filtered off, washed with cold water and ethanol, dried and inspected under an optical microscope. The co­crys­tal phases prepared in this manner had typical isolated yields of 40–60 mg (65–85% yield based on the limiting reagent).

All co­crys­tals displayed a 1:1 stoichiometry except for theo­phyl­line–baicalein (2:1) and theo­phyl­line–hesperetin (2:1). A previously reported theo­phyl­line–di­hydro­myricetin 1:1 ACN solvate phase from aceto­nitrile (Sun et al., 2023View full citation) was prepared successfully from a modification of the co­crys­tallization solvent to 1:1 MeCN–H2O. No change of PXRD pattern emerged in this system upon LAG or solvothermally using MeOH. Finally, co­crys­tal formation using microwave-assisted co­crys­tallization (Ahuja et al., 2020View full citation) was adopted using a Biotage Initiator+ and a 2∼5 ml reaction vial. Most phases isolable by solvothermal or LAG methods could be prepared phase pure in a fast and convenient manner in high yield (80–90%) on a 1 mmol scale in 2 ml 1-butanol (20 min heating at 140 °C and 20 min cooling).

2.2. X-ray crystallography

Crystal data, data collection and structure refinement details are summarized in Table 1[link]. Organic H atoms were placed geometrically and treated with riding constraints and displacement parameters derived from the C atoms to which they were attached. All CH and CH2 groups had Uiso(H) values fixed at 1.2 times the Ueq of the parent C atom. Methyl groups were idealized as freely rotating CH3 groups and Uiso(H) values were fixed at 1.5 times the Ueq of the parent C atom. H atoms on N atoms of the Tph alkaloids and H atoms on O atoms of the flavonoids were located in dif­ference maps and refined with individual isotropic displacement parameters. Disorder, for example in the case of racemic hesperetin and di­hydro­myricetin, was handled using OLEX2 by defining separate parts, which assists maintaining separate geometry, appropriate bonding connectivity and riding H atoms (Nisar et al., 2018View full citation).

Table 1
Experimental details

Experiments were carried out at 100 K.

  1a 1c 1e
Crystal data
Chemical formula C7H8N4O2·C15H10O6 2C7H8N4O2·2C15H10O8·H2O 2C7H8N4O2·C16H14O6
Mr 466.41 1014.82 662.62
Crystal system, space group Monoclinic, P21/n Monoclinic, P21/c Triclinic, PMathematical equation
a, b, c (Å) 6.51941 (9), 7.77386 (10), 39.0816 (5) 7.3270 (1), 32.4057 (4), 17.8062 (2) 6.8286 (2), 14.9790 (3), 16.0763 (4)
α, β, γ (°) 90, 92.4920 (12), 90 90, 97.827 (1), 90 88.624 (2), 83.176 (2), 87.020 (2)
V3) 1978.82 (5) 4188.46 (9) 1630.25 (7)
Z 4 4 2
Radiation type Cu Kα Cu Kα Cu Kα
μ (mm−1) 1.03 1.12 0.88
Crystal size (mm) 0.2 × 0.2 × 0.2 0.1 × 0.02 × 0.01 0.05 × 0.03 × 0.01
 
Data collection
Diffractometer Agilent SuperNova Dual Source diffractometer with an Atlas detector Agilent SuperNova Dual Source diffractometer with an Atlas detector Agilent SuperNova Dual Source diffractometer with an Atlas detector
Absorption correction Multi-scan (CrysAlis PRO; Rigaku OD, 2023View full citation) Multi-scan (CrysAlis PRO; Rigaku OD, 2022View full citation) Multi-scan (CrysAlis PRO; Rigaku OD, 2023View full citation)
Tmin, Tmax 0.807, 1.000 0.568, 1.000 0.935, 1.000
No. of measured, independent and observed reflections 13045, 4130, 3800 [I ≥ 2σ(I)] 25287, 8359, 5887 [I > 2σ(I)] 26501, 6746, 6048 [I > 2σ(I)]
Rint 0.023 0.055 0.029
(sin θ/λ)max−1) 0.633 0.625 0.632
 
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.038, 0.095, 1.06 0.049, 0.118, 0.99 0.048, 0.125, 1.05
No. of reflections 4130 8359 6746
No. of parameters 329 726 469
No. of restraints 0 0 3
H-atom treatment H atoms treated by a mixture of independent and constrained refinement H atoms treated by a mixture of independent and constrained refinement H atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å−3) 0.33, −0.27 0.58, −0.27 0.26, −0.19
  2a 2c 3a
Crystal data
Chemical formula C7H7ClN4O2·C15H10O6 C7H7ClN4O2·C15H10O8 C7H7BrN4O2·C15H10O6
Mr 500.85 532.84 545.30
Crystal system, space group Monoclinic, P21/n Triclinic, PMathematical equation Monoclinic, P21/n
a, b, c (Å) 10.14353 (15), 19.7196 (3), 10.42202 (19) 7.7588 (5), 10.6363 (7), 13.4366 (7) 10.1578 (1), 19.8059 (3), 10.4534 (1)
α, β, γ (°) 90, 93.0362 (14), 90 78.246 (5), 81.294 (5), 81.946 (5) 90, 92.539 (1), 90
V3) 2081.75 (6) 1066.24 (12) 2101.00 (4)
Z 4 2 4
Radiation type Cu Kα Cu Kα Cu Kα
μ (mm−1) 2.18 2.24 3.22
Crystal size (mm) 0.2 × 0.08 × 0.04 0.22 × 0.15 × 0.1 0.2 × 0.1 × 0.08
 
Data collection
Diffractometer Agilent SuperNova Dual Source diffractometer with an Atlas detector Agilent SuperNova Dual Source diffractometer with an Atlas detector Agilent SuperNova Dual Source diffractometer with an Atlas detector
Absorption correction Multi-scan (CrysAlis PRO; Rigaku OD, 2022View full citation) Multi-scan (CrysAlis PRO; Rigaku OD, 2022View full citation) Multi-scan (CrysAlis PRO; Rigaku OD, 2022View full citation)
Tmin, Tmax 0.705, 1.000 0.481, 1.000 0.871, 1.000
No. of measured, independent and observed reflections 12088, 4177, 3533 [I > 2σ(I)] 6593, 4156, 3656 [I > 2σ(I)] 12439, 4220, 3606 [I > 2σ(I)]
Rint 0.030 0.029 0.029
(sin θ/λ)max−1) 0.626 0.626 0.625
 
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.036, 0.100, 1.03 0.038, 0.105, 1.02 0.032, 0.086, 1.06
No. of reflections 4177 4156 4220
No. of parameters 338 364 334
No. of restraints 0 0 4
H-atom treatment H atoms treated by a mixture of independent and constrained refinement H atoms treated by a mixture of independent and constrained refinement H atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å−3) 0.25, −0.38 0.33, −0.38 0.42, −0.43
  3c 3a′ a·H2O
Crystal data
Chemical formula C7H7BrN4O2·C15H10O8 C7H7BrN4O2·C15H10O6·CH4O C15H10O6·H2O
Mr 577.30 577.35 304.25
Crystal system, space group Triclinic, PMathematical equation Triclinic, PMathematical equation Monoclinic, C2/c
a, b, c (Å) 7.7841 (3), 10.7050 (5), 13.4516 (6) 9.9847 (5), 10.6290 (4), 12.1537 (4) 27.7113 (11), 3.7151 (2), 24.7282 (11)
α, β, γ (°) 78.741 (4), 81.454 (4), 81.657 (4) 67.509 (4), 81.274 (3), 73.675 (4) 90, 98.208 (2), 90
V3) 1079.31 (8) 1142.27 (9) 2519.7 (2)
Z 2 2 8
Radiation type Cu Kα Mo Kα Ga Kα, λ = 1.34139 Å
μ (mm−1) 3.25 1.86 0.70
Crystal size (mm) 0.09 × 0.06 × 0.05 0.3 × 0.2 × 0.1 0.03 × 0.03 × 0.03
 
Data collection
Diffractometer Agilent SuperNova Dual Source diffractometer with an Atlas detector Agilent SuperNova Dual Source diffractometer with an Atlas detector Bruker APEXII CCD
Absorption correction Multi-scan (CrysAlis PRO; Rigaku OD, 2023View full citation) Multi-scan (CrysAlis PRO; Rigaku OD, 2023View full citation) Multi-scan (SADABS; Bruker, 2016View full citation)
Tmin, Tmax 0.899, 1.000 0.615, 1.000 0.658, 0.751
No. of measured, independent and observed reflections 6335, 4197, 3614 [I > 2σ(I)] 7430, 4532, 4048 [I > 2σ(I)] 11000, 2557, 1890 [I > 2σ(I)]
Rint 0.026 0.035 0.041
(sin θ/λ)max−1) 0.626 0.622 0.626
 
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.036, 0.097, 1.04 0.029, 0.066, 1.05 0.040, 0.110, 1.06
No. of reflections 4197 4532 2557
No. of parameters 342 358 224
No. of restraints 0 0 0
H-atom treatment H-atom parameters constrained H atoms treated by a mixture of independent and constrained refinement H atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å−3) 1.08, −0.58 0.49, −0.41 0.19, −0.17
Computer programs: CrysAlis PRO (Rigaku OD, 2022View full citation, 2023View full citation), APEX2 (Bruker, 2016View full citation), SAINT (Bruker, 2016View full citation), olex2.solve (Bourhis et al., 2015View full citation), SHELXT2018/2019 (Sheldrick, 2015aView full citation), olex2.refine (Bourhis et al., 2015View full citation), SHELXL2019 (Sheldrick, 2015bView full citation) and OLEX2 (Dolomanov et al., 2009View full citation).

3. Results and discussion

3.1. Background – alkaloid–flavonoid co­crys­tal formation

A search of the Cambridge Structural Database (CSD; Groom et al., 2016View full citation) reveals that the structures of a considerable number of co­crys­tal phases between common alkaloid and flavonoid mol­ecules have been reported. Most of the previous studies have concentrated on the xanthine alkaloids, such as caffeine (Trask et al., 2005View full citation) and its de­methyl­ated analogues theobromine (Sanphui & Nangia, 2014View full citation) and theo­phyl­line (Trask et al., 2006View full citation). A variety of crystallization methodologies were adopted in these various studies (Karimi-Jafari et al., 2018View full citation; Sakhiya & Borkhataria, 2024View full citation). A report on the use of caffeine co­crys­tals to effect a `green technology' separation of a mixture of common flavonoids, namely, myricetin, quercetin and baicalein [see Figs. 1(b)–(d)[link]], based on differential solubility of the co­crys­tals formed, was quite noteworthy (Xia et al., 2021View full citation).

We sought to investigate this issue further with a more general investigation of alkaloid–flavonoid co­crys­tal formation using two steps. The first is an LAG screening through co-grinding of starting materials, using a small amount of solvent to help the process. The polar protic solvent methanol is suitable as a common `sparing' solvent for many com­pounds in both the alkaloid and the flavonoid families. Typically, grinding over a period of 3 h is then sufficient to determine whether any change will occur under these conditions and the resulting powders can be inspected by powder X-ray diffraction (PXRD). Examples of successful co­crys­tal formation are given in Fig. 2[link] for the mol­ecular pairs theo­phyl­line–myricetin (1c, Tph–Myr) and 8-chloro­theo­phyl­line–kaempferol (2a, 8-Cl-Tph–Kmp).

[Figure 2]
Figure 2
Powder X-ray diffractograms for alkaloid–flavonoid mol­ecular pairs. Examples from the theo­phyl­line–myricetin (1c; upper) and 8-chloro­theo­phyl­line–kaempferol (2a, lower) systems.

In cases where a clear PXRD change is seen, follow-up crystallizations using a heating–cooling co-precipitation ap­proach were undertaken. A mixed aqueous methano­lic solution was heated solvothermally for several hours to effect full dissolution of the co-formers and then cooled slowly to afford co­crys­tal formation, typically in agreement with LAG-prepared phases with specimens of suitable size for crystal structure determination. We have carried out this process in around 250 alkaloid–flavonoid binary combinations, resulting in the isolation of 75 co­crys­tal phases (Ye, 2024View full citation). These results indicate a strong tendency for co­crys­tal formation between the two mol­ecular families. This is readily ascribed to the pro­pen­sity for more optimal hy­dro­gen-bonding arrangements in the co­crys­tal phases, with alkaloids being rich in hy­dro­gen-bond-acceptor moieties and flavonoids being rich in hy­dro­gen-bond-donor groups. This was borne out by the variable tendency to co­crys­tal formation based on the degree to which these statements applied to individual mol­ecules. Notwithstanding, all alkaloid and flavonoid mol­ecules studied were found to form at least one co­crys­tal phase (Ye, 2024View full citation).

In order to check the packing efficiencies for co­crys­tals versus their co-formers, we undertook the structure determination of all co-formers studied at a common tem­per­a­ture of 100 K. In many cases, the structures for these common com­pounds are well established and, in some cases, several polymorphic forms have been reported. We were surprised, however, that 8-halotheo­phyl­lines (X = Br, Cl) were unreported and hence carried out new structure determinations for these (Ye et al., 2025View full citation). Several new polymorphs were uncovered for these, which were all distinct from those for the parent mol­ecule theo­phyl­line despite the perturbation of just one atom in the mol­ecule (Fig. 1[link]). Our density functional theory (DFT) calculations supported the notion that these structural changes came from lowering the basicity of the N9 atom. Electrostatic potential (ESP) calculations indicate a lowering of charge on N9 from −0.62 in Tph itself to −0.52 in 8-Cl-Tph and to −0.46 in 8-Br-Tph (Ye et al., 2025View full citation). This supports the observed switch from N7—H⋯N9 hy­dro­gen-bonded polymorphs for theo­phyl­line (Tph) to N7—H⋯O hy­dro­gen-bonded polymorphs for 8-X-Tph. We speculated that this change might affect co­crys­tal formation of 8-X-Tph with flavonoids as well.

The powder X-ray diffractograms from LAG of stoichiometric ratios of the alkaloid and flavonoid were measured and com­pared with the starting reagents and the simulated patterns of the isolated and structurally characterized co­crys­tals. Given sufficient grind time, product patterns matched well to those later simulated from single-crystal structure determinations, after taking into account the tem­per­a­tures of measurement (Fig. 2[link]).

3.2. Cocrystals of theo­phyl­line (Tph) and flavonoids

Three co­crys­tal phases of theo­phyl­line (Tph) have been reported previously (Wang et al., 2022View full citation; Zhu et al., 2017View full citation; Sun et al., 2023View full citation). We were able to prepare all such phases in a reasonably phase-pure manner, by use of both LAG and our heating–cooling co-precipitation process. In all, around 15 com­mon flavonoids were screened for co­crys­tal formation with Tph. A total of six co­crys­tal phases were isolated using the flavonoids depicted in Fig. 1[link], namely, kaempferol (a), quer­cetin (b), myricetin (c), baicalein (d), hesperetin (e) and di­hydro­myricetin (f), which are listed in Table 2[link]. The previously reported phases (CSD refcodes JATPIH, KAM­QIB and NEXSIW) will not be discussed in further detail here and references are given in Table 2[link]. It may be noted that the phases may be of 1:1 or 2:1 stoichiometry, and often hydrated. NEXSIW is an aceto­nitrile solvate. Use of MeOH and our `standard' method of co­crys­tallization yielded no other co­crys­tal phase in this system. Crystal data summaries at 100 K for the three new theo­phyl­line–flavonoid co­crys­tal phases 1a, 1c and 1e are given in Table 1[link].

Table 2
Theophylline (Tph)–flavonoid co­crys­tal phases

Phase Formula Cocrystal System Comments Reference
1a C22H18N4O8 Tph–kaempferol R1 = 3.78% This work
1b C22H18N4O9·0.5H2O Tph–quercetin 0.5H2O a
1c C22H18N4O10·0.5H2O Tph–myricetin 0.5H2O, R1 = 4.87% This work
1d C29H26N8O9·3H2O Tph–baicalein (2/1) 3H2O b
1e C30H30N8O10·xH2O Tph–rac-hesperetin (2/1) Solvate, R1 = 4.85 This work
1f C22H20N4O10·CH3CN Tph–di­hydro­myricetin MeCN solvate c
References: (a) Wang et al. (2022View full citation) (CSD refcode JATPIH); (b) Zhu et al. (2017View full citation) (CSD refcode KAMQIB); (c) Sun et al. (2023View full citation) (CSD refcode NEXSIW).

Our first unreported co­crys­tal phase from theo­phyl­line is produced with kaempferol and an unsolvated 1:1 phase is formed, so the asymmetric unit is a mol­ecular pair, shown in Fig. 3[link]. The phase Tph–Kmp (1a) forms a relatively com­plex packing, that results in the net hy­dro­gen-bonding inter­actions to neighbours shown in Fig. 4[link]. Each theo­phyl­line is hy­dro­gen bonded to four kaempferol neighbours and vice versa. Three hy­dro­gen bonds are donated by the flavonoid and one by the alkaloid, so there is net hy­dro­gen bonding from one entity to the other, as postulated in our general concept of why these mol­ecular classes should have a tendency to co­crys­tal formation with each other.

[Figure 3]
Figure 3
The mol­ecular pair for theo­phyl­line–kaempferol (1a), showing the atom-labelling scheme (50% probability displacement ellipsoids).
[Figure 4]
Figure 4
The packing environment for theo­phyl­line–kaempferol (1a), showing the alkaloid as net hy­dro­gen-bond acceptor and the flavonoid as net hy­dro­gen-bond donor.

Of the other newly prepared co­crys­tal phases, Tph–myricetin is a hemihydrate that crystallizes in the space group P21/c. The asymmetric unit com­prises two theo­phyl­line and two myricetin mol­ecules and a water mol­ecule (Fig. 5[link]) The structure is notable in that the two independent Tph mol­ecules form a hy­dro­gen-bonded dimer via two N7—H⋯O6′ hy­dro­gen bonds that create an R22(10) ring (for this topological notation of hy­dro­gen bonds, see Etter et al., 1990View full citation).

[Figure 5]
Figure 5
The asymmetric unit for theo­phyl­line–myricetin hemihydrate (1c), showing the atom-labelling scheme (50% probability displacement ellipsoids).

In the various polymorphs of theo­phyl­line itself, this is not thermodynamically favoured, though it is found in one metastable polymorph (Dyulgerov et al., 2015View full citation). When viewed along the shorter 7.3 Å a axis, isolated mol­ecular stacks of Tph dimers (space-filled) are seen surrounded by six myricetin stacks (Fig. 6[link]). Overall each Tph dimer pair accepts four hy­dro­gen bonds from phenolic groups on the two myricetins. The water acts as both a hy­dro­gen-bond donor and acceptor to the two myricetin mol­ecules and breaks the pseudosymmetry that can be seen within the asymmetric unit (Fig. 5[link]).

[Figure 6]
Figure 6
Packing diagram for theo­phyl­line–myricetin hemihydrate (1c), viewed along the a axis.

Finally, one further co­crys­tal phase that we have isolated from theo­phyl­line and flavonoids is the solvated 2:1 co­crys­tal theo­phyl­line–rac-hesperetin (1e). Hesperetin is a flavonoid with a single chiral centre and is found naturally as hesperidin, a rutinoside (6-O-α-L-rhamnosyl-D-glucoside), in which the chirality is 2S (Pryzynska, 2022View full citation). However, following isolation, it is usually offered commercially as a racemate. In this case, racemic hesperetin was co­crys­tallized with theo­phyl­line. The product phase crystallizes in the triclinic space group PMathematical equation with a 2:1 ratio of alkaloid to flavonoid and a roughly 70:30 disorder of the racemic hesperetin at a single crystallographic site. In the asymmetric unit shown in Fig. 7[link], the chiral centre is 70%R C12 and 30%S C12A. The opposite enanti­omeric ratio will be found at the inverted site of the unit cell. Attempted refinement in chiral P1 space group failed to improve the modelling indicating there is no spontaneous resolution of the rac-hesperetin in this co­crys­tal phase. The phase is highly solvated and, when viewed along the short 6.8 Å a axis, the structure reveals large channel voids of roughly 7 × 10 Å dimension (Fig. 8[link]). The application of SQUEEZE (Spek, 2015View full citation) indicates around 37 e for a contiguous accessible void of around 112 Å per asymmetric unit. The disordered solvent is com­patible with a combination of two waters and one methanol mol­ecule.

[Figure 7]
Figure 7
The asymmetric unit for theo­phyl­line–rac-hesperetin 2:1 co­crys­tal (1e), with the solvent excluded. The minor disordered com­ponent (30%) is shown in pink.
[Figure 8]
Figure 8
Space-filling diagram of the theo­phyl­line–rac-hesperetin 2:1 co­crys­tal (1e), viewed along the a axis, showing large open solvent channels. The hesperetin mol­ecules are shaded in pink.

3.3. Flavonoid cocrystal formation for 8-chloro and 8-bromo­theo­phyl­line

No structural reports existed for 8-chloro- or 8-bromo­theo­phyl­line polymorphs or co­crys­tals in the CSD. However, the well-known drug dimenhydrinate (Dramamine) is the diphenhydramine salt of the 8-Cl-Tph anion, which was structurally determined (Putra et al., 2016View full citation). Recently, we have reported the polymorphic forms of 8-Cl-Tph and 8-Br-Tph (Ye et al., 2025View full citation). Inter­estingly, these structures exclusively favoured N—H⋯O hy­dro­gen bonding between the alkaloid mol­ecules, that we believed was due to a reduction in N9 basicity. Since the introduction of the 8-halo substituent affected the structural polymorphism of these theo­phyl­line derivatives, we also wanted to see the potential effect on co­crys­tal formation. Accordingly, the same 15 flavonoids were screened for co­crys­tal formation with 8-X-Tph as for Tph. This time the only flavonoids affording co­crys­tals with 8-X-Tph were kaempferol (a) and myricetin (c). The phases produced were found by PXRD to be isostructural between the 8-Cl-Tph and 8-Br-Tph cases. The phase details are given in Table 3[link] and crystal data summaries in Table 1[link]. Attempts to use microwave crystallization to afford these phases in a convenient manner from methanol also yielded a further solvated co­crys­tal phase for 8-Br-Tph and kaempferol (3a′). The sol­vated co­crys­tal formation can, however, be suppressed using 1-butanol (140 °C) in the microwave-assisted co­crys­tallization process from which pure 3a can be isolated.

Table 3
8-Halotheo­phyl­line (8-X-Tph)–flavonoid co­crys­tal phases reported in this article

Phase Formula Cocrystal system Comments
2a C22H17ClN4O8 8-Cl-Tph–kaempferol R1 3.61%
2c C22H17ClN4O10 8-Cl-Tph–myricetin R1 3.82%
3a C22H17BrN4O8 8-Br-Tph–kaempferol R1 3.18%
3a′ C22H17BrN4O8·CH4O 8-Br-Tph–kaempferol MeOH R1 2.86%
3c C22H17BrN4O10 8-Br-Tph–myricetin R1 3.86%

Phases 2a and 3a are isostructural, and the asymmetric unit is a simple mol­ecular pair, as shown in Fig. 9[link]. In all these co­crys­tals, the halotheo­phyl­lines form mol­ecular dimers through N7—H⋯O6 hy­dro­gen bonds, as described above for 1c, and this can be seen in the packing diagram for 2a shown in Fig. 10[link]. The remaining keto O2 atom then typically serves as an acceptor of a strong hy­dro­gen bond from a flavonoid OH group, whilst N9 is involved either in a weak hy­dro­gen bond, as seen in Fig. 9[link] (N9—H⋯O24 = 2.87 Å), or not at all. In 2a and 3a, layer structures are found in which the 8-X-Tph dimers are surrounded by six neighbouring kaempferol mol­ecules (see Fig. 10[link]).

[Figure 9]
Figure 9
The labelling scheme for the 8-Cl-theo­phyl­line–kaempferol 1:1 co­crys­tal (2a), similarly adopted by the isostructural 8-Br analogue 3a.
[Figure 10]
Figure 10
Packing diagram for the 8-Cl-theo­phyl­line–kaempferol 1:1 co­crys­tal (2a), viewed along [101] and showing 8-Cl-Tph dimers (space-filled mol­ecules).

The co­crys­tals of 8-X-Tph with myricetin, 2c (X = Cl) and 3c (X = Br), are also an isostructural pair with simple halogen inter­change. The asymmetric unit and atom-labelling scheme for 2c are shown in Fig. 11[link]. These phases also form layer structures, but in 2c and 3c, there is segregation of the 8-X-Tph dimers and myricetin mol­ecules within the layers, as shown in the packing diagram in Fig. 12[link].

[Figure 11]
Figure 11
The labelling scheme for the 8-Cl-theophilline–myricetin 1:1 co­crys­tal (2c), similarly adopted by the isostructural 8-Br analogue 3c.
[Figure 12]
Figure 12
Packing diagram for 2c, viewed along [110], showing the segregation of myricetin double-stranded chains and 8-Cl-Tph dimers (space-filled).

Finally, a further methano­lated co­crys­tal phase 3a′ was isolated for the 8-Br-Tph–Kmp system, upon microwave-assisted synthesis in MeOH, that was not found previously by LAG or solvothermal crystallization. The asymmetric unit and atom-labelling scheme is shown in Fig. 13[link]. Unlike phase 3a, the alkaloid dimers are not isolated but also segregate from solvated kaempferol in one-dimensional strands (Fig. 14[link]). This phase type may be favoured through the formation of an attractive Br⋯O inter­action of 3.024 (2) Å.

[Figure 13]
Figure 13
The asymmetric unit and labelling scheme for the 8-Br-theo­phyl­line–kaempferol–MeOH 1:1:1 co­crys­tal (3a′).
[Figure 14]
Figure 14
Packing diagram for the 8-Br-theo­phyl­line–kaempferol–MeOH 1:1:1 co­crys­tal (3a′), viewed along [100], showing alternating strands of 8-Br-Tph dimers and solvated kaempferol mol­ecules.

3.4. Structures of coformers: specific volume com­parison for co­crys­tals

The crystal structures at 100 K of theo­phyl­line (Fucke et al., 2012View full citation) and the 8-chloro and 8-bromo analogues 8-X-Tph were reported recently by us (Ye et al., 2025View full citation). Several crystal structures of the various flavonoid coformers were reported previously by others, many of them as hydrated or solvated phases; where possible, we have redetermined these at 100 K. Inter­estingly, no structural entry existed for kaempferol. We have grown this as a monohydrate (a·H2O) through the ambient evaporation of an acetonitrile solution and report its crystal structure here (Fig. 15[link]). The structural details are given in Table 1[link].

[Figure 15]
Figure 15
The asymmetric unit and atom-labelling scheme for kaempferol hydrate (a·H2O) (50% probability displacement ellipsoids).

Table 4(a)[link] gives a summary of the alkaloid and flavonoid coformer structures (at or close to 100 K), along with the corresponding mol­ecular volume (Vmol) for the alkaloid or flavonoid of inter­est. The variable volume of water or solvent mol­ecules make com­parison of specific mol­ecular volumes for co­crys­tals and coformers slightly more involved. However, a useful com­parison of packing efficiency may still be attempted and is provided for the co­crys­tals in Table 4(b)[link]. In general, it was anti­cipated that the specific volume for a co­crys­tal would be less than the sum of the individual coformers; however, surprisingly, this was not found to be the case for these co­crys­tals. If mol­ecular volumes of 20, 40 and 60 Å3 are assigned to water, methanol and aceto­nitrile, respectively, then the combined volumes of the alkaloid and flavonoid mol­ecules in the co­crys­tals are actually equal to or greater than those from the parent coformer crystals themselves.

Table 4
Specific volumes for theophylline–flavonoid coformer/cocrystal phases

(a) specific volumes for theophylline–flavonoid coformer phases
Phase Formula Unit cell volume (Å3), Z Mol­ecular volume (anhydrous)ii3) Reference/CSD refcode
1, theophylline (Tph) C7H8N4O2 390.9, 2 195.5 (195.5) Ye et al. (2025View full citation)
2, 8-Cl-theophylline (8-Cl-Tph) C7H7ClN4O2 418.0, 2 209.0 (209.0) Ye et al. (2025View full citation)
3, 8-Br-theophylline (8-Br-Tph) C7H7BrN4O2 860.9, 4 215.2 (215.2) Ye et al. (2025View full citation)
a, kaempferol, H2O (Kmp) C15H10O6.H2O 2519.7, 8 315.0 (295.0) This work
b, quercetin, H2O (Que) C15H10O7.H2O 1273.8, 4 318.4 (298.4) AKIJEK
c, myricetin, H2O (Myr)i C15H10O8.H2O 1305.5, 4 323.2 (303.2) NIKLAX
d, baicalein (Bai) C15H10O5 1170.7, 4 292.7 (292.7) RAMGOB01
e, hesperetin (Hes) C16H14O6 1359.5, 4 339.9 (339.9) YEHROS
f, di­hydro­myricetin, 2H2O (Dhm) C15H10O8.2H2O 2928.6, 8 366.1 (326.1) SIMVOA02
         
(b) specific volumes for theophylline–flavonoid cocrystal phases
Phase Unit cell volume (Å3), Z Formula volume (anhydrous)b3) Coformer volume (anhydrous) (ΔV Å3) Reference/CSD refcode
1a, Tph–Kmp (1/1) 1978.8, 4 494.7 (494.7) 490.5, −4.2 This work
1b, Tph–Que (1/1), 0.5H2O 4083.2, 8 510.4 (500.4) 493.9, −5.1 JATPIH
1c, Tph–Myr (1/1), 0.5H2O 4188.5, 8 523.6 (513.6) 498.7a, −14.9 This work
1d, Tph–Bai (2/1), 3H2O 1496.2, 2 748.1 (688.1) 683.6, −4.7 KAMQIB
1e, Tph–Hes (2/1) MeOH, 2H2O 1630.2, 2 815.1 (735.1) 730.8, −4.3 This work
1f, Tph–Dhm (1/1), MeCN 2402.0, 4 600.5 (540.5) 521.6, −18.9 NEXSIW
2a, 8-Cl-Tph–Kmp 2081.8, 4 520.4 (520.4) 504.0, −16.4 This work
2c, 8-Cl-Tph–Myr 1066.2, 2 533.1 (533.1) 512.2, −20.9 This work
3a, 8-Br-Tph–Kmp 2101.0, 4 525.3 (525.3) 510.2, −15.1 This work
3a′, 8-Br-Tph–Kmp, MeOH 1142.3, 2 571.2 (531.2) 510.2, −21.2 This work
3c, 8-Br-Tph–Myr 1079.3, 2 539.7 (539.7) 518.4, −21.3 This work
Notes: (i) all unit-cell data at 100 K, except for Myr·H2O (140 K), the coformer volume is reduced by 1% to approximate a 100 K structure; (ii) mol­ecular volumes subtracted: H2O = 20 Å3, MeOH 40 Å3 and MeCN 60 Å3. References for earlier CSD structures: AKIJEK (Domagała et al., 2011View full citation), NIKLAX (Ren et al., 2019View full citation), RAMGOB01 (Rossi et al., 2001View full citation), YEHROS (Maeda et al., 1994View full citation), SIMVOA02 (Hu et al., 2020View full citation), JATPIH (Wang et al., 2022View full citation), KAMQIB (Zhu et al., 2017View full citation) and NEXSIW (Sun et al., 2023View full citation). Except for NIKLAX, these were all redetermined by us at 100 K.

3.5. Rationalization of co­crys­tal formation

Historically, recrystallization of mol­ecular mixtures was used as a tool for purification, relying on the lower solubility of one mol­ecule than the others to initiate its precipitation. The advent of crystal engineering has developed ideas of mol­ecular recognition in organic crystal structures that can also be adapted to assist the intentional co­crys­tallization of mol­ecules, with driving forces for this based on inter­molecular recognition, supra­molecular synthon formation, electrostatic inter­actions or better hy­dro­gen bonding or packing efficiency. Our idea in this project was to survey the tendency of co­crys­tal formation between two extensive and fundamental classes of natural product, i.e. alkaloids, which typically have a surplus of hy­dro­gen-bond-acceptor functionalities (ring N or exocyclic keto O atoms), and flavonoids, which have a surplus of OH-donor functionalities to keto O-atom acceptors.

In examining the co­crys­tal formation for the anti­malarial com­pound 11-aza­ar­tem­is­in­in, we found that it could form co­crys­tals with around 50% of organic carb­oxy­lic acids studied (Nisar et al., 2018View full citation). This appeared to be supported by a favourable supra­molecular heterosynthon between the acid and the amide. In the cases that were successful, the specific volumes of the co­crys­tal phases were typically less than that for the com­ponent co-formers in their own crystal. However, when salicylic acids were studied exclusively, the co­crys­tal formation probability was over 95%, due to strengthening of this heterosynthon, and a number of these co­crys­tals were less efficiently packed than their parent phases (Li et al., 2022View full citation; Li, 2024View full citation). Thus, a sufficient improvement in hy­dro­gen bonding can overcome packing deficiency.

In a study of 350 organic co­crys­tals by DFT calculations, Taylor & Day (2018View full citation) found that the vast majority (>95%) were thermodynamically preferred and by an average of 8 kcal mol−1. However, several factors appear to be operating in tandem to lead to this stabilization. By combining two key descriptors: (i) packing efficiency and (ii) hy­dro­gen-bond strength; these gave good correlations with the stabilization of the co­crys­tal phases. In particular, those phases with lower packing efficiency typically had optimization of hy­dro­gen bonds in the co­crys­tal phases to offset this.

Our surprising findings that the theo­phyl­line–flavonoid co­crys­tals in these studies typically have less efficient packing than the parent coformer phases led us to next examine hy­dro­gen bonding and whether this was optimized in the co­crys­tal phases that we have isolated (Table 5[link]). We present an analysis of Tph and 8-X-Tph with kaempferol and myricetin, since these phases are less solvated than some of the other systems and the structural effect of the 8-halo substituent can also be examined. In general, alkaloid–flavonoid co­crys­tallization does seem to be favoured due to net hy­dro­gen-bond formation from the H-atom-donor-rich flavonoid to the H-atom-acceptor-rich alkaloid.

Table 5
Hydrogen bonds (HBs) for selected crystals and cocrystals

Phase No. of donors, HBs Strongest HBs (Å) Comment Reference
1, Tph 1, 1 NH⋯N 2.820 (4) chain Ye et al. (2025View full citation)
2, 8-Cl-Tph 1, 1 NH⋯O 2.723 (2) dimer Ye et al. (2025View full citation)
3, 8-Br-Tph 1, 1 NH⋯O 2.760 (2) dimer Ye et al. (2025View full citation)
a·H2O, Kmp H2O 6, 6 OH⋯O 2.742 (2) 4 HBs with H2O This work
1a, Tph–Kmp 5, 5 OH⋯O 2.680 (2) 3 HBs Kmp-to-Tph This work
    OH⋯N9 2.794 (2) 1 HB Tph-to-Kmp  
2a. 8-Cl-Tph–Kmp 5, 5 NH⋯O6 2.667 (2) 2 HBs Kmp-to-8-Cl-Tph This work
    OH⋯O2 2.774 (2) OH⋯N9 2.866 Å (weak)  
3a, 8-Br-Tph–Kmp 5, 5 NH⋯O6 2.671 (2) 2 HBs Kmp-to-8-Br-Tph This work
    OH⋯O2 2.769 (2) OH⋯N9 2.881 Å (weak)  
3a′, 8-Br-Tph–Kmp MeOH 6, 6 NH⋯O6 2.698 (2) 1 HB Kmp-to-8-Br-Tph This work
    OH⋯O2 2.708 (2) No use of N9 acceptor  
1c, Tph–Myr 0.5H2O 8, 7 OH⋯N9 2.744 (3) H2O single donor This work
2c, 8-Cl-Tph–Myr 7, 7 OH⋯O2 2.689 (2) 2 HBs Kmp-to-8X-Tph This work
      No use of N9 acceptor  
3c, 8-Br-Tph–Myr 7, 7 OH⋯O2 2.652 (2) 2 HBs Kmp-to-8X-Tph This work
      No use of N9 acceptor  

In principle, theo­phyl­line has three good acceptors, i.e. N9, O2 and O6. In co­crys­tal phase 1a (Tph–Kmp), there are three hy­dro­gen bonds from the flavonoid to these three acceptors, including a short O24—H⋯O2 inter­action (2.68 Å), as well as a `reverse' hy­dro­gen bond from the theo­phyl­line N7—H group to the flavonoid. In the other Tph co­crys­tal phases 1c (Tph–Myr·0.5H2O) and 1e (Tph–Hes 2:1 solvate), once more a surplus of two hy­dro­gen bonds are donated from the flavonoid to the alkaloid and the N9 atom is involved as acceptor. The previously reported co­crys­tals of theo­phyl­line with flavonoids show generally similar findings (Wang et al., 2022View full citation; Zhu et al., 2017View full citation; Sun et al., 2023View full citation).

In examining the structures of theo­phyl­line mol­ecular crystals themselves, we found that the N9 position is deactivated as an acceptor upon substitution of the 8-X groups Cl and Br (Ye et al. 2025View full citation). This deactivation may lie at the heart of why fewer co­crys­tal phases are formed for the 8-halotheo­phyl­lines. This is supported by the observation that in those co­crys­tal types that are found for 8-X-Tph and flavonoids, the N9 group is either in just a weak hy­dro­gen bond (OH⋯N9 = 2.87 Å for 2a and OH⋯N9 = 2.88 Å for 3a) or is not involved at all (phases 2c, 3c and 3a′).

It may be noted that among the flavonoids screened for co­crys­tallization, kaempferol (Kmp) and myricetin (Myr) are the most active coformers, with 12 co­crys­tals each from 15 common alkaloids. This may be explained, in part, by the fact that the com­pounds themselves are difficult to crystallize in the anhydrous form, so that pure coformer crystals are uncom­petitive solid phases. Both kaempferol (reported here) and myricetin (Ren et al., 2019View full citation) form monohydrates, but so does quercetin (Domagała et al., 2011View full citation). Analysis of the respective mol­ecular volumes (Table 4[link]) indicates that quercetin monohydrate is more efficiently packed. Hence, quercetin has a slightly less pronounced tendency to co­crys­tal formation, with eight co­crys­tals, a number of co­crys­tal phases that is similar to baicalein which has a phenyl group.

The 8-halo-Tph phases 2a/3a and 2c/3c are isostructural pairs; however, efforts to isolate the 8-Cl-Tph analogue of the methanol-solvated phase 8-Br-Tph–Kmp·MeOH (3a′) were unsuccessful. Examination of the 3a′ structure shows that a favourable Br⋯O15 contact of 3.024 (2) Å for the halogen-bond inter­action exists in this phase. This would be considerably weaker if Cl is substituted for Br, offering an explanation of why the analogous isostructural methanol solvate 2a′ is not formed.

In the cases pre­sent­ed here, the thermodynamic stability of the majority of the co­crys­tal phases relative to their com­ponents was established through their formation via direct LAG of the coformers in the appropriate stoichiometric ratio (1:1 or 2:1). PXRD indicated that almost all co­crys­tal phases for theo­phyl­line could be formed, with the exception of di­hydro­myricetin, which is an aceto­nitrile solvate, and hesperetin, which forms a highly solvated co­crys­tal phase, which we believe is an unstable kinetic product.

Where LAG is successful, the use of microwave-assisted co­crys­tallization (Ahuja et al., 2020View full citation) appears to be the most convenient ap­proach to form stable phases in good yield and purity, as given for eight phases in Table 6[link]. Yields of 80–90% were obtained for a typical 1 mmol scale in 2 ml 1-butanol, applying 20 min heating at 140 °C, followed by a 20 min cooling cycle, with the solids centrifuged, filtered and dried. When LAG is applied directly, some slight contamination of the co­crys­tals with starting phases is hard to eliminate entirely.

Table 6
Microwave-assisted formation for selected cocrystals*

Phase Alkaloid Mr (mg) Cocrystal Mr % yield
  Flavonoid Mr (mg) Yield (mg)  
1a, Tph–Kmp (1/1) 180.2, 180 466.4 88.6
  286.2, 300 413  
1b, Tph–Que (1/1), 0.5H2O 180.2, 180 491.4 91.8
  302.2, 310 451  
1c, Tph–Myr (1/1), 0.5H2O 180.2, 180 507.4 86.3
  318.2, 325 438  
1d, Tph–Bai (2/1), 3H2O 180.2, 270 (1.5 mmol) 648.6 85.9
  270.2, 210 (0.75 mmol) 557  
2a, 8-Cl-Tph–Kmp (1/1) 214.6, 215 500.8 86.5
  286.2, 300 433  
2c, 8-Cl-Tph–Myr (1/1) 214.6, 215 532.8 92.0
  318.2, 325 490  
3a, 8-Br-Tph–Kmp (1/1) 259.1, 130 545.3 80.7
  286.2, 150 220  
3c, 8-Br-Tph–Myr (1/1) 259.1, 130 577.3 88.5
  318.2, 160 255.5  
Note: (*) microwave-assisted cocrystal formation in Biotage Initiator+ using sealed 2–5 ml reaction vials; 1 mmol scale in 2 ml 1-butanol, except for 1d, a 2:1 cocrystal on a 0.75 mmol scale in 2 ml 1-butanol, and 3a and 3c on a 0.5 mmol scale in 1 ml 1-butanol.

4. Conclusions

Screening for co­crys­tal formation of 13 common flavonoids with a family of alkaloids that are electronically perturbed, shows that theo­phyl­line (Tph) has a markedly stronger tendency for co­crys­tallization com­pared to its 8-halo analogues. A total of six flavonoid co­crys­tals were isolated for Tph, three of which were reported previously, whilst only two flavonoids work for 8-Cl-Tph or 8-Br-Tph. Principally, these are the unsolvated 1:1 phases with kaempferol (2a/3a) and myricetin (2c/3c), which are isostructural for the 8-Cl or 8-Br substituents. None of the successful co­crys­tallization outcomes of flavonoids with any of these theo­phyl­line alkaloids appear to be driven by improved packing efficiency. The marked dif­ference in co­crys­tal formation tendency for Tph com­pared to its halo derivatives may be influenced by the deactivation of the alkaloid N9 atom as a hy­dro­gen-bond acceptor in the halogenated mol­ecules. In general, the co­crys­tal phases reported here are thermodynamically com­petitive and can be prepared by co-precipitation from cooling hot solutions (solvothermal), by LAG of co-formers or, most conveniently, through microwave-assisted co­crys­tallization from 1-butanol.

Supporting information


Computing details top

3,7-Dihydro-1,3-dimethyl-1H-purine-2,6-dione–3,5,7-trihydroxy-2-(4-hydroxyphenyl)-4H-1-benzopyran-4-one (1a-ywj135Cu100k_auto) top
Crystal data top
C7H8N4O2·C15H10O6F(000) = 968
Mr = 466.41Dx = 1.566 Mg m3
Monoclinic, P21/nCu Kα radiation, λ = 1.54184 Å
a = 6.51941 (9) ÅCell parameters from 7930 reflections
b = 7.77386 (10) Åθ = 5.8–77.2°
c = 39.0816 (5) ŵ = 1.03 mm1
β = 92.4920 (12)°T = 100 K
V = 1978.82 (5) Å3Block, yellow
Z = 40.2 × 0.2 × 0.2 mm
Data collection top
Agilent SuperNova Dual Source
diffractometer with an Atlas detector
4130 independent reflections
Radiation source: micro-focus sealed X-ray tube, SuperNova (Cu) X-ray Source3800 reflections with I 2σ(I)
Mirror monochromatorRint = 0.023
Detector resolution: 10.3577 pixels mm-1θmax = 77.2°, θmin = 5.8°
ω scansh = 88
Absorption correction: multi-scan
(CrysAlis PRO; Rigaku OD, 2023)
k = 98
Tmin = 0.807, Tmax = 1.000l = 4949
13045 measured reflections
Refinement top
Refinement on F222 constraints
Least-squares matrix: fullPrimary atom site location: iterative
R[F2 > 2σ(F2)] = 0.038H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.095 w = 1/[σ2(Fo2) + (0.0448P)2 + 0.9648P]
where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max = 0.001
4130 reflectionsΔρmax = 0.33 e Å3
329 parametersΔρmin = 0.27 e Å3
0 restraints
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
N10.44398 (17)0.62449 (15)0.38117 (3)0.0185 (2)
C10.6394 (2)0.54261 (19)0.39194 (4)0.0232 (3)
H1a0.6380 (7)0.4221 (4)0.3846 (3)0.0348 (4)*
H1b0.7528 (3)0.6030 (9)0.3815 (2)0.0348 (4)*
H1c0.6577 (8)0.5481 (13)0.41694 (4)0.0348 (4)*
O20.39234 (15)0.70755 (14)0.43662 (2)0.0244 (2)
C20.3324 (2)0.70499 (17)0.40655 (3)0.0186 (3)
N30.14915 (18)0.78043 (15)0.39649 (3)0.0186 (2)
C30.0255 (2)0.8574 (2)0.42315 (3)0.0236 (3)
H3a0.0926 (10)0.9174 (13)0.41236 (4)0.0354 (4)*
H3b0.0230 (15)0.7666 (3)0.43821 (18)0.0354 (4)*
H3c0.1098 (6)0.9394 (11)0.43663 (19)0.0354 (4)*
C40.0872 (2)0.78206 (17)0.36241 (3)0.0165 (3)
C50.2016 (2)0.70349 (17)0.33814 (3)0.0167 (3)
O60.49961 (15)0.54368 (13)0.32589 (2)0.0216 (2)
C60.3896 (2)0.61805 (17)0.34601 (3)0.0172 (3)
N70.09529 (17)0.73265 (15)0.30734 (3)0.0169 (2)
C80.0717 (2)0.82358 (17)0.31459 (3)0.0177 (3)
H80.1714 (2)0.86028 (17)0.29769 (3)0.0212 (3)*
N90.08420 (17)0.85766 (15)0.34800 (3)0.0181 (2)
O110.87973 (15)0.72884 (13)0.63486 (2)0.0201 (2)
C120.7062 (2)0.79850 (17)0.61910 (3)0.0175 (3)
O130.39840 (15)0.95705 (14)0.62248 (2)0.0230 (2)
C130.5682 (2)0.88574 (17)0.63790 (3)0.0175 (3)
O140.47629 (14)0.99131 (13)0.69160 (2)0.0203 (2)
C140.6018 (2)0.90753 (17)0.67453 (3)0.0166 (3)
O150.71005 (15)0.92751 (13)0.74591 (2)0.0201 (2)
C150.8398 (2)0.84498 (16)0.72499 (3)0.0166 (3)
C161.0220 (2)0.77873 (17)0.73839 (3)0.0176 (3)
H161.0569 (2)0.78821 (17)0.76217 (3)0.0211 (3)*
O171.33559 (15)0.63804 (13)0.73051 (2)0.0225 (2)
C171.1552 (2)0.69688 (17)0.71625 (3)0.0175 (3)
C181.1055 (2)0.67818 (17)0.68159 (3)0.0192 (3)
H181.1951 (2)0.61998 (17)0.66694 (3)0.0231 (3)*
C190.9222 (2)0.74654 (17)0.66899 (3)0.0172 (3)
C200.7851 (2)0.83206 (16)0.68964 (3)0.0161 (3)
C210.7024 (2)0.76391 (17)0.58217 (3)0.0184 (3)
C260.5346 (2)0.80479 (19)0.55985 (3)0.0221 (3)
H260.4174 (2)0.85906 (19)0.56862 (3)0.0265 (3)*
C250.5379 (2)0.7670 (2)0.52524 (4)0.0242 (3)
H250.4227 (2)0.7944 (2)0.51051 (4)0.0291 (4)*
O240.72138 (17)0.64681 (16)0.47835 (3)0.0298 (3)
C240.7096 (2)0.68900 (19)0.51197 (3)0.0225 (3)
C230.8796 (2)0.6510 (2)0.53356 (4)0.0253 (3)
H230.9983 (2)0.6004 (2)0.52451 (4)0.0304 (4)*
C220.8748 (2)0.68710 (19)0.56807 (4)0.0227 (3)
H220.9906 (2)0.65945 (19)0.58264 (4)0.0273 (4)*
H70.133 (3)0.691 (3)0.2865 (5)0.039 (5)*
H171.406 (3)0.582 (3)0.7143 (6)0.050 (6)*
H240.601 (4)0.672 (3)0.4662 (6)0.054 (7)*
H150.602 (3)0.962 (3)0.7317 (6)0.047 (6)*
H130.317 (4)1.009 (3)0.6372 (6)0.065 (7)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
N10.0175 (5)0.0224 (6)0.0154 (5)0.0012 (4)0.0023 (4)0.0002 (4)
C10.0186 (6)0.0296 (7)0.0208 (6)0.0026 (6)0.0040 (5)0.0006 (5)
O20.0246 (5)0.0339 (6)0.0143 (5)0.0013 (4)0.0030 (4)0.0009 (4)
C20.0198 (6)0.0199 (6)0.0159 (6)0.0023 (5)0.0006 (5)0.0003 (5)
N30.0201 (6)0.0234 (6)0.0123 (5)0.0010 (5)0.0009 (4)0.0011 (4)
C30.0254 (7)0.0309 (8)0.0147 (6)0.0030 (6)0.0035 (5)0.0034 (5)
C40.0176 (6)0.0176 (6)0.0142 (6)0.0024 (5)0.0006 (5)0.0007 (5)
C50.0188 (6)0.0188 (6)0.0123 (6)0.0017 (5)0.0001 (5)0.0003 (5)
O60.0203 (5)0.0269 (5)0.0176 (5)0.0043 (4)0.0001 (4)0.0034 (4)
C60.0177 (6)0.0178 (6)0.0159 (6)0.0024 (5)0.0004 (5)0.0002 (5)
N70.0178 (5)0.0201 (5)0.0127 (5)0.0005 (4)0.0002 (4)0.0006 (4)
C80.0177 (6)0.0202 (6)0.0150 (6)0.0012 (5)0.0002 (5)0.0006 (5)
N90.0175 (5)0.0214 (6)0.0152 (5)0.0003 (4)0.0004 (4)0.0007 (4)
O110.0198 (5)0.0269 (5)0.0135 (4)0.0053 (4)0.0024 (3)0.0028 (4)
C120.0177 (6)0.0197 (6)0.0146 (6)0.0005 (5)0.0025 (5)0.0007 (5)
O130.0211 (5)0.0329 (6)0.0148 (4)0.0095 (4)0.0014 (4)0.0010 (4)
C130.0169 (6)0.0188 (6)0.0167 (6)0.0005 (5)0.0014 (5)0.0016 (5)
O140.0188 (5)0.0254 (5)0.0167 (4)0.0043 (4)0.0016 (3)0.0003 (4)
C140.0171 (6)0.0163 (6)0.0165 (6)0.0020 (5)0.0013 (5)0.0011 (5)
O150.0210 (5)0.0258 (5)0.0136 (4)0.0049 (4)0.0017 (4)0.0002 (4)
C150.0186 (6)0.0153 (6)0.0160 (6)0.0012 (5)0.0017 (5)0.0003 (5)
C160.0213 (6)0.0186 (6)0.0126 (6)0.0008 (5)0.0011 (5)0.0008 (5)
O170.0221 (5)0.0281 (5)0.0170 (5)0.0078 (4)0.0036 (4)0.0009 (4)
C170.0173 (6)0.0165 (6)0.0185 (6)0.0004 (5)0.0023 (5)0.0019 (5)
C180.0204 (6)0.0201 (6)0.0173 (6)0.0030 (5)0.0008 (5)0.0017 (5)
C190.0198 (6)0.0180 (6)0.0136 (6)0.0007 (5)0.0012 (5)0.0007 (5)
C200.0171 (6)0.0159 (6)0.0153 (6)0.0015 (5)0.0002 (5)0.0002 (5)
C210.0207 (6)0.0204 (6)0.0140 (6)0.0003 (5)0.0010 (5)0.0010 (5)
C260.0187 (6)0.0301 (7)0.0173 (6)0.0030 (5)0.0003 (5)0.0001 (5)
C250.0199 (7)0.0350 (8)0.0174 (7)0.0022 (6)0.0032 (5)0.0009 (6)
O240.0252 (5)0.0507 (7)0.0133 (5)0.0066 (5)0.0026 (4)0.0056 (4)
C240.0239 (7)0.0303 (7)0.0133 (6)0.0004 (6)0.0004 (5)0.0022 (5)
C230.0229 (7)0.0348 (8)0.0181 (7)0.0057 (6)0.0005 (5)0.0044 (6)
C220.0212 (7)0.0282 (7)0.0184 (7)0.0046 (6)0.0036 (5)0.0019 (5)
Geometric parameters (Å, º) top
N1—C11.4691 (16)C13—C141.4490 (17)
N1—C21.4025 (17)O14—C141.2594 (16)
N1—C61.4048 (16)C14—C201.4348 (18)
C1—H1a0.9800O15—C151.3624 (16)
C1—H1b0.9800O15—H150.92 (2)
C1—H1c0.9800C15—C161.3771 (18)
O2—C21.2223 (16)C15—C201.4150 (17)
C2—N31.3731 (17)C16—H160.9500
N3—C31.4719 (17)C16—C171.4047 (18)
N3—C41.3750 (16)O17—C171.3588 (16)
C3—H3a0.9800O17—H170.91 (2)
C3—H3b0.9800C17—C181.3867 (18)
C3—H3c0.9800C18—H180.9500
C4—C51.3748 (18)C18—C191.3790 (19)
C4—N91.3627 (17)C19—C201.3983 (18)
C5—C61.4160 (18)C21—C261.4055 (18)
C5—N71.3812 (16)C21—C221.4063 (19)
O6—C61.2314 (16)C26—H260.9500
N7—C81.3385 (17)C26—C251.3854 (19)
N7—H70.92 (2)C25—H250.9500
C8—H80.9500C25—C241.393 (2)
C8—N91.3383 (17)O24—C241.3596 (16)
O11—C121.3757 (15)O24—H240.92 (2)
O11—C191.3575 (15)C24—C231.3953 (19)
C12—C131.3660 (19)C23—H230.9500
C12—C211.4673 (17)C23—C221.3794 (19)
O13—C131.3555 (15)C22—H220.9500
O13—H130.89 (3)
C2—N1—C1117.41 (11)C14—C13—O13118.48 (11)
C6—N1—C1116.34 (11)O14—C14—C13120.66 (12)
C6—N1—C2126.22 (11)C20—C14—C13116.51 (11)
H1a—C1—N1109.5C20—C14—O14122.82 (12)
H1b—C1—N1109.5H15—O15—C15104.8 (14)
H1b—C1—H1a109.5C16—C15—O15119.70 (11)
H1c—C1—N1109.5C20—C15—O15118.86 (11)
H1c—C1—H1a109.5C20—C15—C16121.43 (12)
H1c—C1—H1b109.5H16—C16—C15120.62 (8)
O2—C2—N1122.23 (12)C17—C16—C15118.76 (12)
N3—C2—N1117.36 (11)C17—C16—H16120.62 (7)
N3—C2—O2120.40 (12)H17—O17—C17109.2 (14)
C3—N3—C2117.87 (11)O17—C17—C16116.55 (12)
C4—N3—C2119.77 (11)C18—C17—C16121.65 (12)
C4—N3—C3122.36 (11)C18—C17—O17121.79 (12)
H3a—C3—N3109.5H18—C18—C17120.97 (8)
H3b—C3—N3109.5C19—C18—C17118.05 (12)
H3b—C3—H3a109.5C19—C18—H18120.97 (8)
H3c—C3—N3109.5C18—C19—O11116.62 (12)
H3c—C3—H3a109.5C20—C19—O11120.47 (12)
H3c—C3—H3b109.5C20—C19—C18122.90 (12)
C5—C4—N3121.27 (12)C15—C20—C14122.87 (12)
N9—C4—N3127.25 (12)C19—C20—C14119.91 (12)
N9—C4—C5111.48 (11)C19—C20—C15117.17 (12)
C6—C5—C4123.27 (12)C26—C21—C12123.24 (12)
N7—C5—C4105.17 (11)C22—C21—C12118.93 (12)
N7—C5—C6131.54 (12)C22—C21—C26117.82 (12)
C5—C6—N1112.04 (11)H26—C26—C21119.55 (8)
O6—C6—N1120.80 (12)C25—C26—C21120.89 (13)
O6—C6—C5127.16 (12)C25—C26—H26119.55 (8)
C8—N7—C5106.50 (11)H25—C25—C26119.91 (8)
H7—N7—C5124.7 (13)C24—C25—C26120.18 (13)
H7—N7—C8128.7 (13)C24—C25—H25119.91 (8)
H8—C8—N7123.34 (7)H24—O24—C24111.3 (14)
N9—C8—N7113.31 (12)O24—C24—C25123.04 (13)
N9—C8—H8123.34 (8)C23—C24—C25119.81 (13)
C8—N9—C4103.53 (11)C23—C24—O24117.16 (13)
C19—O11—C12121.92 (10)H23—C23—C24120.09 (8)
C13—C12—O11120.18 (11)C22—C23—C24119.82 (13)
C21—C12—O11110.27 (11)C22—C23—H23120.09 (8)
C21—C12—C13129.55 (12)C23—C22—C21121.45 (13)
H13—O13—C13113.2 (16)H22—C22—C21119.27 (8)
O13—C13—C12120.54 (12)H22—C22—C23119.27 (8)
C14—C13—C12120.97 (12)
N1—C2—N3—C3176.87 (12)C12—C21—C22—C23179.75 (13)
N1—C2—N3—C43.15 (14)O13—C13—C14—O140.22 (14)
N1—C6—C5—C40.32 (14)O13—C13—C14—C20179.09 (12)
N1—C6—C5—N7177.86 (10)C13—C14—C20—C15179.04 (11)
O2—C2—N3—C32.35 (16)C13—C14—C20—C191.43 (14)
O2—C2—N3—C4177.63 (13)O14—C14—C20—C150.20 (16)
C2—N3—C4—C52.57 (14)O14—C14—C20—C19177.41 (13)
C2—N3—C4—N9176.80 (12)C14—C20—C15—O152.29 (14)
N3—C4—C5—C60.75 (15)C14—C20—C15—C16176.60 (12)
N3—C4—C5—N7179.33 (13)C14—C20—C19—C18176.89 (12)
N3—C4—N9—C8179.40 (15)O15—C15—C16—C17178.86 (12)
C4—C5—C6—O6179.34 (13)O15—C15—C20—C19179.97 (12)
C4—C5—N7—C80.18 (12)C15—C16—C17—O17178.17 (12)
C4—N9—C8—N70.10 (11)C15—C16—C17—C181.43 (15)
C5—N7—C8—N90.18 (11)C15—C20—C19—C180.85 (14)
O11—C12—C13—O13178.97 (12)C16—C17—C18—C191.64 (15)
O11—C12—C13—C140.33 (15)O17—C17—C18—C19177.93 (13)
O11—C12—C21—C26173.69 (11)C17—C18—C19—C200.47 (15)
O11—C12—C21—C226.73 (13)C21—C26—C25—C240.63 (17)
O11—C19—C18—C17178.84 (12)C21—C22—C23—C240.81 (17)
O11—C19—C20—C142.39 (15)C26—C25—C24—O24179.19 (14)
O11—C19—C20—C15179.86 (12)C26—C25—C24—C230.86 (18)
C12—C13—C14—O14178.44 (13)C25—C24—C23—C221.57 (18)
C12—C13—C14—C200.43 (15)O24—C24—C23—C22178.48 (14)
C12—C21—C26—C25179.05 (14)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N7—H7···O15i0.92 (2)1.92 (2)2.8335 (15)172.2 (18)
O17—H17···O6ii0.91 (2)1.97 (2)2.8663 (14)168 (2)
O24—H24···O20.92 (2)1.77 (2)2.6796 (14)170 (2)
O15—H15···O140.92 (2)1.75 (2)2.6064 (13)154 (2)
O13—H13···N9iii0.89 (3)1.95 (3)2.7942 (15)157 (2)
Symmetry codes: (i) x1/2, y+3/2, z1/2; (ii) x+2, y+1, z+1; (iii) x, y+2, z+1.
3,7-Dihydro-1,3-dimethyl-1H-purine-2,6-dione–\ 3,5,7-trihydroxy-2-(3,4,5-trihydroxyphenyl)-4H-1-benzopyran-4-one–\ water (2/2/1) (1c-ywj16bcult_auto) top
Crystal data top
2C7H8N4O2·2C15H10O8·H2OF(000) = 2104
Mr = 1014.82Dx = 1.609 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54184 Å
a = 7.3270 (1) ÅCell parameters from 8351 reflections
b = 32.4057 (4) Åθ = 2.7–74.7°
c = 17.8062 (2) ŵ = 1.12 mm1
β = 97.827 (1)°T = 100 K
V = 4188.46 (9) Å3Needle, yellow
Z = 40.1 × 0.02 × 0.01 mm
Data collection top
Agilent SuperNova Dual Source
diffractometer with an Atlas detector
8359 independent reflections
Radiation source: micro-focus sealed X-ray tube, SuperNova (Cu) X-ray Source5887 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.055
Detector resolution: 10.3577 pixels mm-1θmax = 74.6°, θmin = 2.7°
ω scansh = 98
Absorption correction: multi-scan
(CrysAlis PRO; Rigaku OD, 2022)
k = 3939
Tmin = 0.568, Tmax = 1.000l = 1522
25287 measured reflections
Refinement top
Refinement on F2Primary atom site location: dual
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.049H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.118 w = 1/[σ2(Fo2) + (0.0602P)2]
where P = (Fo2 + 2Fc2)/3
S = 0.99(Δ/σ)max = 0.001
8359 reflectionsΔρmax = 0.58 e Å3
726 parametersΔρmin = 0.27 e Å3
0 restraints
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Refinement. X-ray diffraction data of 1 were collected at 100 K on Rigaku–Oxford Diffraction Supernova using a Cu Kα or Mo Kα source, or on a Bruker D8 Venture with Excillum Metal Jet with liquid gallium alloy Ga Kα source. SADABS (Bruker, 2008) was used for data reduction. All the structures were solved using the charge-flipping algorithm from an embedded SHELXL program (Sheldrick, 2015b) and refined from within the OLEX2 suite (Dolomanov et al., 2009; Bourhis et al. 2015).

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
N10.2434 (3)0.25340 (6)0.40629 (11)0.0239 (4)
C10.2511 (4)0.29345 (7)0.44569 (14)0.0307 (5)
H1A0.1550200.3116600.4204230.046*
H1B0.3721690.3060930.4443740.046*
H1C0.2313960.2892440.4984860.046*
O20.3373 (2)0.28594 (5)0.30430 (9)0.0283 (4)
C20.2921 (3)0.25376 (7)0.33314 (13)0.0236 (5)
N30.2882 (3)0.21711 (6)0.29438 (11)0.0241 (4)
C30.3488 (4)0.21616 (8)0.21892 (14)0.0316 (6)
H3A0.3724110.1875610.2051750.047*
H3B0.4619370.2323780.2198370.047*
H3C0.2522830.2279100.1814990.047*
C40.2348 (3)0.18171 (7)0.32825 (13)0.0234 (5)
C50.1902 (3)0.18230 (7)0.40065 (12)0.0229 (5)
O60.1563 (2)0.22088 (5)0.51068 (9)0.0272 (4)
C60.1927 (3)0.21852 (7)0.44546 (12)0.0222 (5)
N70.1452 (3)0.14215 (6)0.41536 (11)0.0261 (4)
C80.1637 (4)0.12056 (8)0.35277 (13)0.0289 (5)
H80.1400080.0917880.3481850.035*
N90.2182 (3)0.14316 (6)0.29758 (11)0.0275 (4)
O110.3211 (2)0.00655 (5)0.06654 (8)0.0201 (3)
C120.2750 (3)0.01447 (7)0.00945 (12)0.0202 (4)
O130.2825 (2)0.06037 (5)0.11379 (9)0.0256 (3)
C130.3197 (3)0.05149 (7)0.03864 (12)0.0205 (4)
O140.4411 (2)0.11772 (5)0.01930 (9)0.0253 (3)
C140.4065 (3)0.08374 (7)0.00914 (12)0.0203 (4)
O150.5684 (3)0.14184 (5)0.11795 (9)0.0262 (4)
C150.5335 (3)0.10338 (7)0.14156 (12)0.0211 (4)
C160.5775 (3)0.09292 (7)0.21645 (12)0.0245 (5)
H160.6353470.1123880.2518510.029*
O170.5840 (3)0.04534 (5)0.31522 (9)0.0350 (5)
C170.5360 (4)0.05323 (7)0.24013 (12)0.0247 (5)
C180.4493 (3)0.02400 (7)0.19030 (12)0.0222 (5)
H180.4200860.0026840.2072470.027*
C190.4074 (3)0.03542 (7)0.11482 (12)0.0190 (4)
C200.4489 (3)0.07426 (7)0.08834 (11)0.0193 (4)
C210.1782 (3)0.02056 (7)0.04855 (12)0.0190 (4)
C220.1513 (3)0.05638 (7)0.00741 (12)0.0212 (4)
H220.1984410.0579430.0449200.025*
O230.0259 (3)0.12380 (5)0.00140 (9)0.0272 (4)
C230.0564 (3)0.08943 (7)0.04278 (12)0.0216 (5)
O240.1062 (2)0.12221 (5)0.14907 (9)0.0254 (3)
C240.0128 (3)0.08805 (7)0.11971 (13)0.0213 (5)
O250.0541 (3)0.05305 (5)0.23624 (9)0.0280 (4)
C250.0155 (3)0.05276 (7)0.16084 (12)0.0226 (5)
C260.1095 (3)0.01904 (7)0.12585 (12)0.0216 (4)
H260.1270470.0050350.1544600.026*
N1A0.0578 (3)0.06189 (6)0.62626 (10)0.0236 (4)
C1A0.0530 (4)0.02203 (7)0.58675 (14)0.0325 (6)
H1AA0.0542930.0061350.6094850.049*
H1AB0.0443650.0269110.5330310.049*
H1AC0.1657260.0065280.5914520.049*
O2A0.1410 (3)0.02695 (5)0.72736 (9)0.0286 (4)
C2A0.1065 (3)0.05993 (7)0.69931 (12)0.0218 (4)
N3A0.1144 (3)0.09642 (6)0.73775 (10)0.0220 (4)
C3A0.1549 (4)0.09551 (7)0.81632 (12)0.0269 (5)
H3AA0.0525860.1080570.8497670.040*
H3AB0.1708560.0668520.8317580.040*
H3AC0.2682670.1110120.8198440.040*
C4A0.0766 (3)0.13284 (7)0.70346 (11)0.0200 (4)
C5A0.0241 (3)0.13367 (7)0.63253 (12)0.0205 (4)
O6A0.0413 (3)0.09507 (5)0.52606 (9)0.0286 (4)
C6A0.0085 (3)0.09742 (7)0.58942 (12)0.0228 (5)
N7A0.0020 (3)0.17491 (6)0.61789 (11)0.0215 (4)
C8A0.0350 (3)0.19561 (7)0.67886 (12)0.0222 (5)
H8A0.0268180.2247890.6832900.027*
N9A0.0847 (3)0.17121 (6)0.73294 (10)0.0220 (4)
O11A0.4403 (2)0.32994 (5)1.06778 (8)0.0204 (3)
C12A0.3879 (3)0.33807 (7)0.99814 (12)0.0193 (4)
O13A0.3451 (3)0.38602 (5)0.90218 (9)0.0290 (4)
C13A0.3958 (3)0.37751 (7)0.97084 (12)0.0216 (5)
O14A0.4637 (3)0.44749 (5)0.98821 (9)0.0285 (4)
C14A0.4566 (3)0.41140 (7)1.01410 (12)0.0227 (5)
O15A0.5714 (3)0.47130 (5)1.11445 (9)0.0273 (4)
C15A0.5637 (3)0.43117 (7)1.13664 (12)0.0227 (5)
C16A0.6119 (3)0.42038 (7)1.20625 (12)0.0227 (5)
H16A0.6503120.4407831.2390760.027*
O17A0.6539 (3)0.36981 (5)1.29622 (9)0.0255 (4)
C17A0.6031 (3)0.37859 (7)1.22765 (12)0.0216 (4)
C18A0.5460 (3)0.34819 (7)1.18129 (12)0.0204 (4)
H18A0.5403170.3200711.1965490.025*
C19A0.4974 (3)0.36018 (7)1.11179 (12)0.0197 (4)
C20A0.5052 (3)0.40110 (7)1.08738 (12)0.0210 (4)
C21A0.3303 (3)0.30017 (7)0.96276 (12)0.0189 (4)
C22A0.3296 (3)0.26307 (7)1.00371 (12)0.0205 (4)
H22A0.3635150.2630601.0533340.025*
O23A0.2790 (3)0.19101 (5)1.01249 (9)0.0285 (4)
C23A0.2795 (3)0.22665 (7)0.97184 (12)0.0219 (5)
O24A0.1882 (3)0.18869 (5)0.87189 (9)0.0266 (4)
C24A0.2315 (3)0.22579 (7)0.89908 (12)0.0204 (4)
O25A0.1718 (3)0.25842 (5)0.78955 (9)0.0320 (4)
C25A0.2280 (3)0.26256 (7)0.85876 (12)0.0221 (5)
C26A0.2774 (3)0.29965 (7)0.88977 (12)0.0222 (4)
H26A0.2754550.3245420.8617210.027*
O1W0.1342 (4)0.31328 (8)0.68921 (14)0.0574 (7)
H24A0.161 (5)0.1892 (10)0.827 (2)0.043 (9)*
H7A0.042 (4)0.1860 (9)0.5786 (16)0.025 (7)*
H240.143 (5)0.1177 (10)0.201 (2)0.043 (9)*
H70.110 (4)0.1319 (10)0.4618 (18)0.040 (8)*
H23A0.242 (5)0.1707 (11)0.9869 (19)0.044 (9)*
H230.049 (5)0.1394 (10)0.0342 (18)0.038 (8)*
H25A0.171 (5)0.2801 (12)0.768 (2)0.050 (10)*
H13A0.375 (5)0.4076 (11)0.894 (2)0.045 (10)*
H130.319 (4)0.0843 (10)0.1198 (16)0.026 (7)*
H15A0.543 (5)0.4733 (10)1.070 (2)0.045 (9)*
H150.541 (5)0.1424 (10)0.069 (2)0.043 (9)*
H170.558 (5)0.0231 (12)0.326 (2)0.057 (11)*
H250.070 (6)0.0288 (13)0.254 (2)0.064 (12)*
H17A0.654 (5)0.3474 (11)1.3011 (18)0.035 (9)*
H1WA0.057 (7)0.3303 (16)0.685 (3)0.094 (17)*
H1WB0.235 (7)0.3205 (15)0.663 (3)0.085 (16)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
N10.0289 (11)0.0175 (9)0.0257 (9)0.0008 (8)0.0053 (8)0.0003 (7)
C10.0418 (15)0.0192 (12)0.0321 (12)0.0004 (10)0.0090 (11)0.0022 (9)
O20.0351 (10)0.0193 (8)0.0326 (8)0.0001 (7)0.0117 (7)0.0046 (7)
C20.0220 (11)0.0232 (12)0.0265 (11)0.0011 (9)0.0062 (9)0.0037 (9)
N30.0290 (11)0.0207 (10)0.0242 (9)0.0002 (8)0.0090 (8)0.0009 (7)
C30.0437 (15)0.0260 (13)0.0282 (12)0.0012 (11)0.0165 (11)0.0012 (10)
C40.0253 (12)0.0210 (11)0.0246 (11)0.0009 (9)0.0059 (9)0.0004 (9)
C50.0262 (12)0.0198 (11)0.0235 (10)0.0007 (9)0.0058 (9)0.0006 (9)
O60.0380 (10)0.0222 (8)0.0226 (8)0.0015 (7)0.0085 (7)0.0013 (6)
C60.0244 (12)0.0196 (11)0.0229 (10)0.0009 (9)0.0042 (9)0.0006 (8)
N70.0345 (12)0.0206 (10)0.0242 (9)0.0014 (8)0.0078 (8)0.0014 (8)
C80.0408 (14)0.0184 (11)0.0288 (11)0.0004 (10)0.0093 (10)0.0040 (9)
N90.0372 (12)0.0216 (10)0.0251 (9)0.0009 (8)0.0093 (8)0.0024 (8)
O110.0272 (8)0.0149 (7)0.0195 (7)0.0014 (6)0.0077 (6)0.0006 (6)
C120.0223 (11)0.0194 (11)0.0202 (10)0.0024 (9)0.0080 (8)0.0005 (8)
O130.0371 (10)0.0183 (8)0.0213 (7)0.0058 (7)0.0041 (7)0.0038 (6)
C130.0224 (11)0.0196 (11)0.0205 (10)0.0023 (8)0.0069 (8)0.0012 (8)
O140.0358 (9)0.0167 (8)0.0235 (7)0.0036 (7)0.0045 (7)0.0062 (6)
C140.0216 (11)0.0173 (10)0.0236 (10)0.0009 (8)0.0089 (9)0.0028 (8)
O150.0415 (10)0.0165 (8)0.0212 (8)0.0050 (7)0.0069 (7)0.0034 (6)
C150.0258 (11)0.0142 (10)0.0250 (10)0.0009 (8)0.0090 (9)0.0020 (8)
C160.0363 (13)0.0185 (11)0.0204 (10)0.0026 (9)0.0100 (9)0.0015 (8)
O170.0730 (14)0.0155 (8)0.0168 (8)0.0100 (9)0.0073 (8)0.0005 (6)
C170.0398 (14)0.0179 (11)0.0182 (10)0.0012 (9)0.0106 (9)0.0017 (8)
C180.0326 (13)0.0147 (10)0.0211 (10)0.0019 (9)0.0105 (9)0.0021 (8)
C190.0215 (11)0.0168 (10)0.0207 (10)0.0009 (8)0.0095 (8)0.0024 (8)
C200.0221 (11)0.0190 (11)0.0189 (10)0.0028 (8)0.0096 (8)0.0009 (8)
C210.0182 (11)0.0164 (10)0.0241 (10)0.0007 (8)0.0087 (8)0.0001 (8)
C220.0241 (11)0.0205 (11)0.0204 (10)0.0014 (9)0.0085 (8)0.0003 (8)
O230.0378 (10)0.0178 (8)0.0268 (8)0.0042 (7)0.0078 (7)0.0010 (6)
C230.0253 (11)0.0158 (10)0.0259 (11)0.0033 (9)0.0115 (9)0.0019 (8)
O240.0324 (9)0.0162 (8)0.0280 (8)0.0004 (7)0.0058 (7)0.0014 (6)
C240.0224 (11)0.0154 (10)0.0280 (11)0.0006 (8)0.0100 (9)0.0044 (8)
O250.0422 (11)0.0176 (8)0.0233 (8)0.0012 (7)0.0009 (7)0.0003 (6)
C250.0276 (12)0.0184 (11)0.0220 (10)0.0047 (9)0.0036 (9)0.0016 (8)
C260.0278 (12)0.0138 (10)0.0243 (10)0.0027 (9)0.0073 (9)0.0021 (8)
N1A0.0340 (11)0.0159 (9)0.0223 (9)0.0009 (8)0.0082 (8)0.0021 (7)
C1A0.0556 (17)0.0162 (11)0.0282 (11)0.0018 (11)0.0148 (11)0.0028 (9)
O2A0.0451 (11)0.0158 (8)0.0262 (8)0.0003 (7)0.0098 (7)0.0030 (6)
C2A0.0281 (12)0.0184 (11)0.0194 (10)0.0028 (9)0.0051 (9)0.0020 (8)
N3A0.0317 (11)0.0175 (9)0.0177 (8)0.0014 (8)0.0066 (7)0.0003 (7)
C3A0.0445 (15)0.0197 (11)0.0183 (10)0.0011 (10)0.0115 (10)0.0026 (8)
C4A0.0251 (11)0.0166 (10)0.0183 (9)0.0018 (8)0.0033 (8)0.0007 (8)
C5A0.0233 (11)0.0189 (11)0.0201 (10)0.0008 (9)0.0057 (8)0.0022 (8)
O6A0.0438 (10)0.0217 (8)0.0231 (8)0.0023 (7)0.0149 (7)0.0005 (6)
C6A0.0272 (12)0.0209 (11)0.0212 (10)0.0003 (9)0.0058 (9)0.0027 (9)
N7A0.0283 (10)0.0168 (9)0.0209 (9)0.0001 (8)0.0084 (8)0.0013 (7)
C8A0.0275 (12)0.0174 (11)0.0224 (10)0.0002 (9)0.0059 (9)0.0008 (8)
N9A0.0293 (10)0.0172 (9)0.0204 (8)0.0003 (8)0.0066 (8)0.0003 (7)
O11A0.0307 (9)0.0127 (7)0.0192 (7)0.0011 (6)0.0081 (6)0.0018 (6)
C12A0.0244 (11)0.0163 (10)0.0176 (9)0.0008 (8)0.0043 (8)0.0011 (8)
O13A0.0576 (12)0.0134 (8)0.0178 (7)0.0063 (8)0.0114 (7)0.0022 (6)
C13A0.0317 (12)0.0172 (11)0.0162 (9)0.0016 (9)0.0045 (9)0.0012 (8)
O14A0.0498 (11)0.0149 (8)0.0218 (7)0.0037 (7)0.0085 (7)0.0004 (6)
C14A0.0306 (12)0.0168 (11)0.0198 (10)0.0010 (9)0.0008 (9)0.0005 (8)
O15A0.0492 (11)0.0135 (8)0.0207 (8)0.0042 (7)0.0100 (7)0.0011 (6)
C15A0.0324 (12)0.0143 (10)0.0211 (10)0.0023 (9)0.0023 (9)0.0004 (8)
C16A0.0276 (12)0.0178 (11)0.0231 (10)0.0006 (9)0.0052 (9)0.0064 (8)
O17A0.0406 (10)0.0158 (9)0.0231 (8)0.0001 (7)0.0148 (7)0.0015 (6)
C17A0.0248 (11)0.0208 (11)0.0196 (10)0.0031 (9)0.0046 (8)0.0026 (8)
C18A0.0245 (11)0.0153 (10)0.0225 (10)0.0009 (8)0.0067 (8)0.0002 (8)
C19A0.0212 (11)0.0166 (11)0.0215 (10)0.0014 (8)0.0032 (8)0.0034 (8)
C20A0.0257 (11)0.0179 (11)0.0194 (10)0.0008 (9)0.0031 (8)0.0019 (8)
C21A0.0225 (11)0.0144 (10)0.0199 (10)0.0006 (8)0.0034 (8)0.0025 (8)
C22A0.0266 (12)0.0165 (10)0.0198 (10)0.0009 (9)0.0089 (8)0.0002 (8)
O23A0.0516 (12)0.0125 (8)0.0256 (8)0.0034 (7)0.0197 (8)0.0021 (6)
C23A0.0285 (12)0.0159 (11)0.0224 (10)0.0001 (9)0.0076 (9)0.0024 (8)
O24A0.0472 (11)0.0146 (8)0.0209 (8)0.0051 (7)0.0151 (7)0.0004 (6)
C24A0.0256 (12)0.0147 (10)0.0216 (10)0.0027 (8)0.0056 (9)0.0029 (8)
O25A0.0627 (13)0.0168 (8)0.0208 (8)0.0050 (8)0.0207 (8)0.0028 (7)
C25A0.0313 (13)0.0178 (11)0.0185 (10)0.0008 (9)0.0082 (9)0.0001 (8)
C26A0.0323 (12)0.0162 (10)0.0188 (10)0.0005 (9)0.0057 (9)0.0024 (8)
O1W0.0462 (14)0.0630 (16)0.0572 (13)0.0248 (12)0.0139 (11)0.0407 (12)
Geometric parameters (Å, º) top
N1—C11.473 (3)N1A—C2A1.396 (3)
N1—C21.397 (3)N1A—C6A1.397 (3)
N1—C61.405 (3)C1A—H1AA0.9800
C1—H1A0.9800C1A—H1AB0.9800
C1—H1B0.9800C1A—H1AC0.9800
C1—H1C0.9800O2A—C2A1.221 (3)
O2—C21.228 (3)C2A—N3A1.371 (3)
C2—N31.372 (3)N3A—C3A1.469 (3)
N3—C31.472 (3)N3A—C4A1.374 (3)
N3—C41.377 (3)C3A—H3AA0.9800
C3—H3A0.9800C3A—H3AB0.9800
C3—H3B0.9800C3A—H3AC0.9800
C3—H3C0.9800C4A—C5A1.369 (3)
C4—C51.373 (3)C4A—N9A1.354 (3)
C4—N91.362 (3)C5A—C6A1.416 (3)
C5—C61.418 (3)C5A—N7A1.380 (3)
C5—N71.376 (3)O6A—C6A1.234 (3)
O6—C61.229 (3)N7A—C8A1.335 (3)
N7—C81.338 (3)N7A—H7A0.87 (3)
N7—H70.96 (3)C8A—H8A0.9500
C8—H80.9500C8A—N9A1.334 (3)
C8—N91.330 (3)O11A—C12A1.373 (3)
O11—C121.374 (3)O11A—C19A1.356 (3)
O11—C191.366 (3)C12A—C13A1.366 (3)
C12—C131.365 (3)C12A—C21A1.468 (3)
C12—C211.463 (3)O13A—C13A1.353 (3)
O13—C131.360 (3)O13A—H13A0.74 (4)
O13—H130.83 (3)C13A—C14A1.446 (3)
C13—C141.440 (3)O14A—C14A1.256 (3)
O14—C141.252 (3)C14A—C20A1.438 (3)
C14—C201.435 (3)O15A—C15A1.358 (3)
O15—C151.351 (3)O15A—H15A0.84 (4)
O15—H150.87 (3)C15A—C16A1.380 (3)
C15—C161.371 (3)C15A—C20A1.416 (3)
C15—C201.419 (3)C16A—H16A0.9500
C16—H160.9500C16A—C17A1.406 (3)
C16—C171.400 (3)O17A—C17A1.354 (3)
O17—C171.360 (3)O17A—H17A0.73 (3)
O17—H170.77 (4)C17A—C18A1.386 (3)
C17—C181.391 (3)C18A—H18A0.9500
C18—H180.9500C18A—C19A1.389 (3)
C18—C191.388 (3)C19A—C20A1.394 (3)
C19—C201.392 (3)C21A—C22A1.406 (3)
C21—C221.401 (3)C21A—C26A1.406 (3)
C21—C261.401 (3)C22A—H22A0.9500
C22—H220.9500C22A—C23A1.381 (3)
C22—C231.381 (3)O23A—C23A1.363 (3)
O23—C231.370 (3)O23A—H23A0.86 (3)
O23—H230.90 (3)C23A—C24A1.388 (3)
C23—C241.395 (3)O24A—C24A1.350 (3)
O24—C241.367 (3)O24A—H24A0.85 (3)
O24—H240.93 (3)C24A—C25A1.393 (3)
C24—C251.389 (3)O25A—C25A1.358 (3)
O25—C251.370 (3)O25A—H25A0.81 (4)
O25—H250.85 (4)C25A—C26A1.391 (3)
C25—C261.393 (3)C26A—H26A0.9500
C26—H260.9500O1W—H1WA0.80 (5)
N1A—C1A1.474 (3)O1W—H1WB0.85 (5)
C2—N1—C1116.03 (19)C2A—N1A—C6A126.16 (19)
C2—N1—C6126.03 (19)C6A—N1A—C1A118.29 (18)
C6—N1—C1117.92 (19)N1A—C1A—H1AA109.5
N1—C1—H1A109.5N1A—C1A—H1AB109.5
N1—C1—H1B109.5N1A—C1A—H1AC109.5
N1—C1—H1C109.5H1AA—C1A—H1AB109.5
H1A—C1—H1B109.5H1AA—C1A—H1AC109.5
H1A—C1—H1C109.5H1AB—C1A—H1AC109.5
H1B—C1—H1C109.5O2A—C2A—N1A120.9 (2)
O2—C2—N1121.0 (2)O2A—C2A—N3A121.70 (19)
O2—C2—N3120.9 (2)N3A—C2A—N1A117.35 (19)
N3—C2—N1118.13 (19)C2A—N3A—C3A119.06 (18)
C2—N3—C3119.29 (19)C2A—N3A—C4A119.58 (17)
C2—N3—C4119.25 (18)C4A—N3A—C3A121.30 (18)
C4—N3—C3121.41 (19)N3A—C3A—H3AA109.5
N3—C3—H3A109.5N3A—C3A—H3AB109.5
N3—C3—H3B109.5N3A—C3A—H3AC109.5
N3—C3—H3C109.5H3AA—C3A—H3AB109.5
H3A—C3—H3B109.5H3AA—C3A—H3AC109.5
H3A—C3—H3C109.5H3AB—C3A—H3AC109.5
H3B—C3—H3C109.5C5A—C4A—N3A121.7 (2)
C5—C4—N3121.2 (2)N9A—C4A—N3A126.44 (18)
N9—C4—N3127.1 (2)N9A—C4A—C5A111.84 (19)
N9—C4—C5111.7 (2)C4A—C5A—C6A122.5 (2)
C4—C5—C6123.6 (2)C4A—C5A—N7A104.89 (19)
C4—C5—N7105.0 (2)N7A—C5A—C6A132.63 (19)
N7—C5—C6131.3 (2)N1A—C6A—C5A112.58 (18)
N1—C6—C5111.75 (19)O6A—C6A—N1A120.4 (2)
O6—C6—N1121.7 (2)O6A—C6A—C5A127.0 (2)
O6—C6—C5126.6 (2)C5A—N7A—H7A128.5 (18)
C5—N7—H7126.3 (19)C8A—N7A—C5A106.51 (18)
C8—N7—C5106.35 (19)C8A—N7A—H7A124.9 (18)
C8—N7—H7127.3 (19)N7A—C8A—H8A123.4
N7—C8—H8123.1N9A—C8A—N7A113.2 (2)
N9—C8—N7113.7 (2)N9A—C8A—H8A123.4
N9—C8—H8123.1C8A—N9A—C4A103.52 (17)
C8—N9—C4103.19 (19)C19A—O11A—C12A121.98 (17)
C19—O11—C12121.52 (17)O11A—C12A—C21A111.06 (18)
O11—C12—C21111.22 (18)C13A—C12A—O11A119.84 (19)
C13—C12—O11120.0 (2)C13A—C12A—C21A129.10 (19)
C13—C12—C21128.8 (2)C13A—O13A—H13A105 (3)
C13—O13—H13107 (2)C12A—C13A—C14A121.47 (19)
C12—C13—C14121.5 (2)O13A—C13A—C12A120.57 (19)
O13—C13—C12122.3 (2)O13A—C13A—C14A117.96 (19)
O13—C13—C14116.20 (19)O14A—C14A—C13A120.79 (19)
O14—C14—C13119.8 (2)O14A—C14A—C20A123.1 (2)
O14—C14—C20123.8 (2)C20A—C14A—C13A116.1 (2)
C20—C14—C13116.39 (19)C15A—O15A—H15A110 (2)
C15—O15—H15108 (2)O15A—C15A—C16A119.90 (19)
O15—C15—C16120.1 (2)O15A—C15A—C20A118.87 (19)
O15—C15—C20119.32 (19)C16A—C15A—C20A121.2 (2)
C16—C15—C20120.6 (2)C15A—C16A—H16A120.7
C15—C16—H16120.4C15A—C16A—C17A118.65 (19)
C15—C16—C17119.2 (2)C17A—C16A—H16A120.7
C17—C16—H16120.4C17A—O17A—H17A109 (2)
C17—O17—H17112 (3)O17A—C17A—C16A116.01 (19)
O17—C17—C16115.6 (2)O17A—C17A—C18A122.0 (2)
O17—C17—C18122.3 (2)C18A—C17A—C16A122.00 (19)
C18—C17—C16122.2 (2)C17A—C18A—H18A121.1
C17—C18—H18121.4C17A—C18A—C19A117.8 (2)
C19—C18—C17117.3 (2)C19A—C18A—H18A121.1
C19—C18—H18121.4O11A—C19A—C18A116.70 (19)
O11—C19—C18116.72 (19)O11A—C19A—C20A120.65 (19)
O11—C19—C20120.65 (19)C18A—C19A—C20A122.6 (2)
C18—C19—C20122.6 (2)C15A—C20A—C14A122.4 (2)
C15—C20—C14122.0 (2)C19A—C20A—C14A119.94 (19)
C19—C20—C14119.9 (2)C19A—C20A—C15A117.67 (19)
C19—C20—C15118.09 (19)C22A—C21A—C12A118.27 (18)
C22—C21—C12119.2 (2)C22A—C21A—C26A119.16 (19)
C26—C21—C12121.75 (19)C26A—C21A—C12A122.56 (19)
C26—C21—C22119.1 (2)C21A—C22A—H22A120.0
C21—C22—H22119.9C23A—C22A—C21A120.02 (19)
C23—C22—C21120.1 (2)C23A—C22A—H22A120.0
C23—C22—H22119.9C23A—O23A—H23A110 (2)
C23—O23—H23104 (2)C22A—C23A—C24A121.1 (2)
C22—C23—C24121.1 (2)O23A—C23A—C22A119.21 (18)
O23—C23—C22119.6 (2)O23A—C23A—C24A119.73 (19)
O23—C23—C24119.3 (2)C24A—O24A—H24A115 (2)
C24—O24—H24108 (2)C23A—C24A—C25A119.25 (19)
O24—C24—C23116.5 (2)O24A—C24A—C23A117.03 (19)
O24—C24—C25124.6 (2)O24A—C24A—C25A123.72 (19)
C25—C24—C23118.9 (2)C25A—O25A—H25A112 (3)
C25—O25—H25111 (3)O25A—C25A—C24A114.34 (19)
C24—C25—C26120.7 (2)O25A—C25A—C26A125.0 (2)
O25—C25—C24116.7 (2)C26A—C25A—C24A120.69 (19)
O25—C25—C26122.6 (2)C21A—C26A—H26A120.1
C21—C26—H26119.9C25A—C26A—C21A119.8 (2)
C25—C26—C21120.1 (2)C25A—C26A—H26A120.1
C25—C26—H26119.9H1WA—O1W—H1WB110 (5)
C2A—N1A—C1A115.51 (18)
N1—C2—N3—C3176.6 (2)N1A—C2A—N3A—C3A176.6 (2)
N1—C2—N3—C40.8 (3)N1A—C2A—N3A—C4A0.6 (3)
C1—N1—C2—O20.4 (3)C1A—N1A—C2A—O2A0.4 (3)
C1—N1—C2—N3179.6 (2)C1A—N1A—C2A—N3A179.3 (2)
C1—N1—C6—C5179.7 (2)C1A—N1A—C6A—C5A178.3 (2)
C1—N1—C6—O60.3 (4)C1A—N1A—C6A—O6A1.5 (4)
O2—C2—N3—C33.3 (4)O2A—C2A—N3A—C3A3.6 (4)
O2—C2—N3—C4179.3 (2)O2A—C2A—N3A—C4A179.2 (2)
C2—N1—C6—C51.9 (3)C2A—N1A—C6A—C5A4.0 (3)
C2—N1—C6—O6178.1 (2)C2A—N1A—C6A—O6A176.2 (2)
C2—N3—C4—C51.7 (4)C2A—N3A—C4A—C5A2.4 (3)
C2—N3—C4—N9178.1 (2)C2A—N3A—C4A—N9A177.6 (2)
N3—C4—C5—C60.8 (4)N3A—C4A—C5A—C6A1.1 (4)
N3—C4—C5—N7179.8 (2)N3A—C4A—C5A—N7A179.7 (2)
N3—C4—N9—C8180.0 (2)N3A—C4A—N9A—C8A179.6 (2)
C3—N3—C4—C5175.6 (2)C3A—N3A—C4A—C5A174.6 (2)
C3—N3—C4—N94.6 (4)C3A—N3A—C4A—N9A5.3 (4)
C4—C5—C6—N10.9 (3)C4A—C5A—C6A—N1A1.9 (3)
C4—C5—C6—O6179.1 (2)C4A—C5A—C6A—O6A178.3 (2)
C4—C5—N7—C80.4 (3)C4A—C5A—N7A—C8A0.0 (3)
C5—C4—N9—C80.2 (3)C5A—C4A—N9A—C8A0.4 (3)
C5—N7—C8—N90.3 (3)C5A—N7A—C8A—N9A0.3 (3)
C6—N1—C2—O2178.8 (2)C6A—N1A—C2A—O2A177.3 (2)
C6—N1—C2—N31.1 (4)C6A—N1A—C2A—N3A2.9 (4)
C6—C5—N7—C8178.9 (3)C6A—C5A—N7A—C8A179.1 (3)
N7—C5—C6—N1178.3 (2)N7A—C5A—C6A—N1A177.0 (2)
N7—C5—C6—O61.7 (4)N7A—C5A—C6A—O6A2.8 (4)
N7—C8—N9—C40.0 (3)N7A—C8A—N9A—C4A0.4 (3)
N9—C4—C5—C6179.0 (2)N9A—C4A—C5A—C6A178.9 (2)
N9—C4—C5—N70.4 (3)N9A—C4A—C5A—N7A0.2 (3)
O11—C12—C13—O13177.88 (19)O11A—C12A—C13A—O13A179.8 (2)
O11—C12—C13—C143.3 (3)O11A—C12A—C13A—C14A0.6 (4)
O11—C12—C21—C222.2 (3)O11A—C12A—C21A—C22A2.3 (3)
O11—C12—C21—C26176.95 (19)O11A—C12A—C21A—C26A177.3 (2)
O11—C19—C20—C142.1 (3)O11A—C19A—C20A—C14A1.5 (3)
O11—C19—C20—C15178.14 (19)O11A—C19A—C20A—C15A179.1 (2)
C12—O11—C19—C18179.3 (2)C12A—O11A—C19A—C18A179.7 (2)
C12—O11—C19—C201.0 (3)C12A—O11A—C19A—C20A0.1 (3)
C12—C13—C14—O14178.1 (2)C12A—C13A—C14A—O14A179.8 (2)
C12—C13—C14—C202.1 (3)C12A—C13A—C14A—C20A0.9 (4)
C12—C21—C22—C23178.4 (2)C12A—C21A—C22A—C23A178.8 (2)
C12—C21—C26—C25179.0 (2)C12A—C21A—C26A—C25A178.6 (2)
O13—C13—C14—O140.8 (3)O13A—C13A—C14A—O14A0.7 (4)
O13—C13—C14—C20179.02 (19)O13A—C13A—C14A—C20A178.7 (2)
C13—C12—C21—C22178.2 (2)C13A—C12A—C21A—C22A178.3 (2)
C13—C12—C21—C262.7 (4)C13A—C12A—C21A—C26A2.2 (4)
C13—C14—C20—C15179.66 (19)C13A—C14A—C20A—C15A178.7 (2)
C13—C14—C20—C190.6 (3)C13A—C14A—C20A—C19A1.9 (3)
O14—C14—C20—C150.5 (3)O14A—C14A—C20A—C15A0.6 (4)
O14—C14—C20—C19179.2 (2)O14A—C14A—C20A—C19A178.7 (2)
O15—C15—C16—C17178.4 (2)O15A—C15A—C16A—C17A179.8 (2)
O15—C15—C20—C142.9 (3)O15A—C15A—C20A—C14A1.1 (4)
O15—C15—C20—C19177.3 (2)O15A—C15A—C20A—C19A179.6 (2)
C15—C16—C17—O17180.0 (2)C15A—C16A—C17A—O17A179.3 (2)
C15—C16—C17—C180.8 (4)C15A—C16A—C17A—C18A0.6 (4)
C16—C15—C20—C14177.9 (2)C16A—C15A—C20A—C14A179.1 (2)
C16—C15—C20—C191.8 (3)C16A—C15A—C20A—C19A0.2 (4)
C16—C17—C18—C191.1 (4)C16A—C17A—C18A—C19A0.2 (4)
O17—C17—C18—C19179.8 (2)O17A—C17A—C18A—C19A179.7 (2)
C17—C18—C19—O11179.56 (19)C17A—C18A—C19A—O11A179.4 (2)
C17—C18—C19—C200.1 (3)C17A—C18A—C19A—C20A0.4 (4)
C18—C19—C20—C14178.2 (2)C18A—C19A—C20A—C14A178.7 (2)
C18—C19—C20—C151.5 (3)C18A—C19A—C20A—C15A0.6 (4)
C19—O11—C12—C131.8 (3)C19A—O11A—C12A—C13A1.2 (3)
C19—O11—C12—C21177.89 (17)C19A—O11A—C12A—C21A179.3 (2)
C20—C15—C16—C170.7 (4)C20A—C15A—C16A—C17A0.4 (4)
C21—C12—C13—O132.5 (4)C21A—C12A—C13A—O13A0.4 (4)
C21—C12—C13—C14176.3 (2)C21A—C12A—C13A—C14A180.0 (2)
C21—C22—C23—O23177.94 (19)C21A—C22A—C23A—O23A179.8 (2)
C21—C22—C23—C240.6 (3)C21A—C22A—C23A—C24A0.8 (4)
C22—C21—C26—C250.2 (3)C22A—C21A—C26A—C25A0.9 (4)
C22—C23—C24—O24179.38 (19)C22A—C23A—C24A—O24A178.7 (2)
C22—C23—C24—C250.2 (3)C22A—C23A—C24A—C25A2.2 (4)
O23—C23—C24—O240.9 (3)O23A—C23A—C24A—O24A0.8 (3)
O23—C23—C24—C25178.7 (2)O23A—C23A—C24A—C25A178.4 (2)
C23—C24—C25—O25179.6 (2)C23A—C24A—C25A—O25A177.4 (2)
C23—C24—C25—C260.7 (3)C23A—C24A—C25A—C26A2.0 (4)
O24—C24—C25—O250.9 (3)O24A—C24A—C25A—O25A1.7 (4)
O24—C24—C25—C26178.8 (2)O24A—C24A—C25A—C26A178.9 (2)
C24—C25—C26—C210.6 (3)C24A—C25A—C26A—C21A0.5 (4)
O25—C25—C26—C21179.8 (2)O25A—C25A—C26A—C21A178.8 (2)
C26—C21—C22—C230.7 (3)C26A—C21A—C22A—C23A0.8 (4)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
O24A—H24A···N9A0.85 (3)1.92 (3)2.744 (2)161 (3)
N7A—H7A···O60.87 (3)1.93 (3)2.780 (2)165 (3)
O24—H24···N90.93 (3)1.93 (3)2.745 (3)146 (3)
N7—H7···O6A0.96 (3)1.77 (3)2.684 (2)158 (3)
O23—H23···O240.90 (3)2.10 (3)2.676 (2)120 (3)
O25A—H25A···O1W0.81 (4)1.81 (4)2.562 (3)155 (4)
O13A—H13A···O17i0.74 (4)2.06 (4)2.720 (2)148 (4)
O13A—H13A···O14A0.74 (4)2.29 (3)2.726 (2)119 (3)
O13—H13···O140.83 (3)2.18 (3)2.665 (2)117 (2)
O15A—H15A···O14A0.84 (4)1.85 (3)2.599 (2)148 (3)
O15—H15···O140.87 (3)1.82 (3)2.614 (2)150 (3)
O17—H17···O15Aii0.77 (4)1.98 (4)2.714 (2)157 (4)
O25—H25···O2Aiii0.85 (4)1.90 (4)2.727 (2)166 (4)
O17A—H17A···O2iv0.73 (3)1.99 (3)2.723 (2)175 (3)
O1W—H1WB···O15i0.85 (5)1.97 (5)2.778 (3)157 (5)
Symmetry codes: (i) x1, y+1/2, z+1/2; (ii) x, y+1/2, z3/2; (iii) x, y, z+1; (iv) x1, y, z+1.
3,7-Dihydro-1,3-dimethyl-1H-purine-2,6-dione–rac–5,7-dihydroxy-2-(3-hydroxy-4-methoxyphenyl)-2,3-dihydro-4H-1-benzopyran-4-one (1f-ywj137acu100k_auto) top
Crystal data top
2C7H8N4O2·C16H14O6Z = 2
Mr = 662.62F(000) = 692
Triclinic, P1Dx = 1.350 Mg m3
a = 6.8286 (2) ÅCu Kα radiation, λ = 1.54184 Å
b = 14.9790 (3) ÅCell parameters from 12687 reflections
c = 16.0763 (4) Åθ = 2.7–76.8°
α = 88.624 (2)°µ = 0.88 mm1
β = 83.176 (2)°T = 100 K
γ = 87.020 (2)°Prism, colourless
V = 1630.25 (7) Å30.05 × 0.03 × 0.01 mm
Data collection top
Agilent SuperNova Dual Source
diffractometer with an Atlas detector
6746 independent reflections
Radiation source: micro-focus sealed X-ray tube, SuperNova (Cu) X-ray Source6048 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.029
Detector resolution: 10.3577 pixels mm-1θmax = 77.1°, θmin = 3.0°
ω scansh = 88
Absorption correction: multi-scan
(CrysAlis PRO; Rigaku OD, 2023)
k = 1818
Tmin = 0.935, Tmax = 1.000l = 1920
26501 measured reflections
Refinement top
Refinement on F2Primary atom site location: iterative
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.048H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.125 w = 1/[σ2(Fo2) + (0.055P)2 + 0.9542P]
where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max = 0.001
6746 reflectionsΔρmax = 0.26 e Å3
469 parametersΔρmin = 0.19 e Å3
3 restraints
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/UeqOcc. (<1)
O110.75613 (18)0.16694 (8)0.84601 (7)0.0269 (3)
O60.54233 (18)1.06700 (8)0.38537 (7)0.0294 (3)
O170.88283 (19)0.11735 (8)0.55313 (7)0.0303 (3)
O150.94956 (19)0.12590 (8)0.73807 (8)0.0307 (3)
O240.50476 (18)0.35328 (9)1.20176 (8)0.0333 (3)
O20.70088 (19)0.93804 (8)0.12937 (7)0.0316 (3)
O6A0.7177 (2)0.59707 (8)0.54129 (8)0.0345 (3)
O140.8863 (2)0.09825 (8)0.89644 (8)0.0358 (3)
O2A0.7817 (2)0.29229 (9)0.55070 (8)0.0389 (3)
O230.8907 (2)0.33772 (11)1.14515 (9)0.0429 (4)
N30.7030 (2)0.84628 (9)0.24398 (9)0.0266 (3)
N10.6211 (2)1.00110 (9)0.25813 (9)0.0256 (3)
N1A0.7425 (2)0.44369 (9)0.54403 (9)0.0278 (3)
N7A0.7829 (2)0.58019 (10)0.34929 (9)0.0282 (3)
N70.6080 (2)0.87763 (9)0.46015 (9)0.0268 (3)
N3A0.8023 (2)0.35747 (9)0.42125 (9)0.0284 (3)
N90.7020 (2)0.76324 (10)0.37586 (9)0.0288 (3)
N9A0.8267 (2)0.44517 (10)0.29076 (9)0.0291 (3)
C50.6194 (2)0.91087 (11)0.37915 (10)0.0251 (4)
C170.8717 (2)0.08734 (11)0.63331 (10)0.0251 (4)
C190.8101 (2)0.10919 (11)0.78164 (10)0.0233 (3)
C150.9085 (2)0.03750 (11)0.72635 (10)0.0253 (4)
C180.8176 (2)0.14448 (11)0.70089 (10)0.0245 (3)
H180.7867770.2062060.6915110.029*
C200.8562 (2)0.01776 (11)0.79653 (10)0.0236 (3)
C160.9165 (2)0.00340 (11)0.64546 (10)0.0256 (4)
H160.9518740.0412420.5989290.031*
C5A0.7733 (2)0.51758 (11)0.41383 (11)0.0260 (4)
C60.5894 (2)0.99854 (11)0.34590 (10)0.0245 (4)
C40.6768 (2)0.83906 (11)0.32953 (10)0.0251 (4)
C6A0.7426 (2)0.52726 (11)0.50203 (11)0.0275 (4)
C20.6765 (2)0.92830 (11)0.20570 (10)0.0264 (4)
C4A0.8016 (2)0.43633 (11)0.37568 (10)0.0256 (4)
C230.7573 (3)0.29778 (12)1.10345 (11)0.0310 (4)
C240.5550 (3)0.30540 (11)1.13014 (11)0.0290 (4)
C8A0.8143 (3)0.53374 (12)0.27812 (11)0.0293 (4)
H8A0.8265370.5611810.2239880.035*
C10.5956 (2)1.08871 (10)0.21617 (9)0.0302 (4)
H1AA0.4730231.0910560.1899230.045*0.7
H1AB0.7077061.0972570.1731640.045*0.7
H1AC0.5891651.1361180.2575150.045*0.7
C140.8436 (3)0.01882 (11)0.88098 (11)0.0305 (4)
C80.6576 (3)0.79034 (11)0.45496 (11)0.0293 (4)
H80.6611200.7515190.5024240.035*
C2A0.7766 (3)0.36003 (11)0.50686 (11)0.0287 (4)
C1A0.7085 (3)0.44503 (13)0.63626 (11)0.0336 (4)
H1AD0.8295120.4610360.6583130.050*
H1AE0.6717770.3857290.6578920.050*
H1AF0.6016310.4891990.6538920.050*
C30.7564 (3)0.76666 (12)0.19374 (11)0.0339 (4)
H3A0.8879630.7429630.2040270.051*
H3B0.7570520.7824620.1341960.051*
H3C0.6597950.7212010.2093150.051*
C250.4390 (7)0.2618 (2)1.08403 (19)0.0323 (8)0.7
H250.2998870.2675331.0981800.039*0.7
C220.8412 (6)0.2493 (2)1.0354 (2)0.0253 (7)0.7
H220.9794290.2483821.0185740.030*0.7
C210.7176 (6)0.20199 (17)0.99207 (15)0.0232 (6)0.7
C260.5150 (6)0.2083 (2)1.01605 (18)0.0274 (7)0.7
H260.4286800.1766920.9866210.033*0.7
C3A0.8426 (3)0.27088 (12)0.38059 (13)0.0415 (5)
H3AA0.8372530.2785770.3201860.062*
H3AB0.7434440.2292090.4038020.062*
H3AC0.9742640.2469230.3905930.062*
C270.3095 (3)0.34459 (17)1.24263 (15)0.0493 (6)
H27A0.2147970.3757931.2094240.074*
H27B0.2985740.3708461.2983430.074*
H27C0.2809040.2811411.2482310.074*
C13A0.7478 (5)0.04197 (17)0.94699 (15)0.0275 (5)0.7
H13A0.7883390.0227501.0020360.033*0.7
H13B0.6025050.0394870.9502820.033*0.7
C12A0.8076 (4)0.13636 (16)0.92663 (14)0.0253 (5)0.7
H12A0.9544090.1368490.9247820.030*0.7
C120.6896 (10)0.1278 (4)0.9286 (3)0.0245 (10)*0.3
H120.5636610.0985800.9228960.029*0.3
C130.8348 (11)0.0545 (4)0.9526 (4)0.0268 (14)*0.3
H13C0.7889070.0281611.0081580.032*0.3
H13D0.9666680.0783020.9547470.032*0.3
C22A0.7886 (13)0.2367 (6)1.0325 (7)0.027 (2)*0.3
H22A0.9213450.2223301.0102380.032*0.3
C21A0.6411 (15)0.1981 (4)0.9950 (5)0.0189 (17)*0.3
C26A0.4459 (13)0.2165 (5)1.0227 (5)0.027 (2)*0.3
H26A0.3469210.1935010.9935230.033*0.3
C25A0.3923 (2)0.26714 (10)1.09113 (9)0.023 (2)*0.3
H25A0.2578210.2776151.1130010.028*0.3
H1BD0.4633551.1092930.2408910.045*0.3
H1BE0.5890251.0793830.1564610.045*0.3
H1BF0.6697751.1312230.2438410.045*0.3
H230.8307850.3646141.1909010.048 (7)*
H7A0.7637850.6464540.3560710.059 (8)*
H150.9358050.1341960.7913310.049 (7)*
H70.5667950.9059040.5079710.037 (6)*
H170.8533650.1774140.5516110.059 (8)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
O110.0378 (6)0.0242 (6)0.0178 (6)0.0011 (5)0.0006 (5)0.0024 (4)
O60.0377 (7)0.0260 (6)0.0242 (6)0.0009 (5)0.0019 (5)0.0021 (5)
O170.0417 (7)0.0295 (6)0.0189 (6)0.0013 (5)0.0012 (5)0.0015 (4)
O150.0417 (7)0.0220 (6)0.0286 (7)0.0010 (5)0.0054 (5)0.0039 (5)
O240.0312 (6)0.0368 (7)0.0316 (7)0.0039 (5)0.0016 (5)0.0162 (5)
O20.0396 (7)0.0330 (6)0.0216 (6)0.0048 (5)0.0007 (5)0.0000 (5)
O6A0.0516 (8)0.0260 (6)0.0260 (6)0.0003 (5)0.0044 (5)0.0061 (5)
O140.0513 (8)0.0260 (6)0.0286 (7)0.0029 (5)0.0007 (6)0.0033 (5)
O2A0.0551 (8)0.0271 (7)0.0330 (7)0.0002 (6)0.0001 (6)0.0027 (5)
O230.0331 (7)0.0639 (10)0.0313 (7)0.0027 (6)0.0018 (5)0.0179 (6)
N30.0305 (7)0.0275 (7)0.0215 (7)0.0017 (5)0.0007 (5)0.0021 (5)
N10.0279 (7)0.0263 (7)0.0225 (7)0.0036 (5)0.0022 (5)0.0009 (5)
N1A0.0328 (7)0.0266 (7)0.0236 (7)0.0002 (5)0.0023 (6)0.0024 (5)
N7A0.0330 (7)0.0266 (7)0.0247 (7)0.0007 (5)0.0024 (6)0.0018 (5)
N70.0335 (7)0.0264 (7)0.0199 (7)0.0020 (5)0.0011 (5)0.0000 (5)
N3A0.0346 (7)0.0221 (7)0.0278 (7)0.0012 (5)0.0007 (6)0.0035 (5)
N90.0335 (7)0.0267 (7)0.0257 (7)0.0024 (6)0.0010 (6)0.0001 (5)
N9A0.0329 (7)0.0306 (7)0.0239 (7)0.0034 (6)0.0028 (6)0.0038 (5)
C50.0269 (8)0.0282 (8)0.0202 (8)0.0038 (6)0.0021 (6)0.0001 (6)
C170.0258 (7)0.0284 (8)0.0214 (8)0.0040 (6)0.0021 (6)0.0013 (6)
C190.0235 (7)0.0245 (8)0.0219 (8)0.0035 (6)0.0012 (6)0.0039 (6)
C150.0254 (7)0.0239 (8)0.0269 (8)0.0022 (6)0.0040 (6)0.0033 (6)
C180.0273 (8)0.0234 (7)0.0225 (8)0.0025 (6)0.0008 (6)0.0018 (6)
C200.0255 (7)0.0244 (8)0.0211 (8)0.0028 (6)0.0023 (6)0.0020 (6)
C160.0281 (8)0.0261 (8)0.0226 (8)0.0018 (6)0.0020 (6)0.0072 (6)
C5A0.0273 (8)0.0245 (8)0.0262 (8)0.0023 (6)0.0026 (6)0.0024 (6)
C60.0243 (7)0.0266 (8)0.0226 (8)0.0036 (6)0.0018 (6)0.0005 (6)
C40.0242 (7)0.0283 (8)0.0228 (8)0.0036 (6)0.0019 (6)0.0015 (6)
C6A0.0296 (8)0.0276 (8)0.0255 (8)0.0009 (6)0.0043 (6)0.0029 (6)
C20.0256 (8)0.0308 (8)0.0226 (8)0.0049 (6)0.0000 (6)0.0015 (6)
C4A0.0254 (8)0.0269 (8)0.0243 (8)0.0008 (6)0.0012 (6)0.0046 (6)
C230.0403 (9)0.0304 (9)0.0214 (8)0.0017 (7)0.0011 (7)0.0029 (6)
C240.0393 (9)0.0250 (8)0.0227 (8)0.0002 (7)0.0037 (7)0.0061 (6)
C8A0.0325 (8)0.0322 (9)0.0232 (8)0.0012 (7)0.0031 (6)0.0015 (6)
C10.0368 (9)0.0285 (8)0.0251 (8)0.0030 (7)0.0031 (7)0.0034 (6)
C140.0379 (9)0.0257 (8)0.0265 (9)0.0006 (7)0.0011 (7)0.0011 (6)
C80.0366 (9)0.0271 (8)0.0238 (8)0.0018 (7)0.0023 (7)0.0003 (6)
C2A0.0300 (8)0.0272 (8)0.0287 (9)0.0017 (6)0.0024 (6)0.0009 (6)
C1A0.0397 (10)0.0360 (9)0.0245 (9)0.0019 (7)0.0031 (7)0.0009 (7)
C30.0476 (10)0.0288 (9)0.0244 (8)0.0024 (7)0.0001 (7)0.0044 (7)
C250.0261 (14)0.0400 (18)0.0316 (16)0.0036 (11)0.0039 (11)0.0068 (11)
C220.0296 (16)0.0272 (15)0.0194 (14)0.0016 (13)0.0036 (13)0.0051 (10)
C210.0263 (15)0.0247 (13)0.0187 (13)0.0030 (11)0.0021 (11)0.0023 (9)
C260.030 (2)0.0301 (15)0.0235 (14)0.0025 (13)0.0078 (14)0.0072 (10)
C3A0.0623 (13)0.0251 (9)0.0353 (10)0.0018 (8)0.0026 (9)0.0065 (7)
C270.0363 (10)0.0595 (14)0.0506 (13)0.0097 (9)0.0094 (9)0.0263 (10)
C13A0.0340 (14)0.0288 (13)0.0189 (11)0.0021 (11)0.0001 (10)0.0001 (9)
C12A0.0306 (13)0.0281 (12)0.0174 (11)0.0009 (9)0.0040 (9)0.0020 (8)
Geometric parameters (Å, º) top
O11—C191.3691 (19)C5A—C4A1.370 (2)
O11—C12A1.441 (2)C23—C241.397 (3)
O11—C121.469 (6)C23—C221.378 (4)
O6—C61.227 (2)C23—C22A1.468 (11)
O17—C171.3498 (19)C24—C251.349 (3)
O17—H170.9121C24—C25A1.485 (2)
O15—C151.353 (2)C8A—H8A0.9500
O15—H150.8570C1—H1AA0.9800
O24—C241.370 (2)C1—H1AB0.9800
O24—C271.426 (2)C1—H1AC0.9800
O2—C21.225 (2)C1—H1BD0.9800
O6A—C6A1.228 (2)C1—H1BE0.9800
O14—C141.237 (2)C1—H1BF0.9800
O2A—C2A1.223 (2)C14—C13A1.484 (3)
O23—C231.363 (2)C14—C131.604 (7)
O23—H230.8923C8—H80.9500
N3—C41.368 (2)C1A—H1AD0.9800
N3—C21.374 (2)C1A—H1AE0.9800
N3—C31.462 (2)C1A—H1AF0.9800
N1—C61.402 (2)C3—H3A0.9800
N1—C21.403 (2)C3—H3B0.9800
N1—C11.4728 (19)C3—H3C0.9800
N1A—C6A1.408 (2)C25—H250.9500
N1A—C2A1.398 (2)C25—C261.403 (5)
N1A—C1A1.474 (2)C22—H220.9500
N7A—C5A1.380 (2)C22—C211.387 (5)
N7A—C8A1.343 (2)C21—C261.390 (5)
N7A—H7A1.0013C21—C12A1.511 (3)
N7—C51.378 (2)C26—H260.9500
N7—C81.336 (2)C3A—H3AA0.9800
N7—H70.8952C3A—H3AB0.9800
N3A—C4A1.375 (2)C3A—H3AC0.9800
N3A—C2A1.368 (2)C27—H27A0.9800
N3A—C3A1.465 (2)C27—H27B0.9800
N9—C41.358 (2)C27—H27C0.9800
N9—C81.339 (2)C13A—H13A0.9900
N9A—C4A1.360 (2)C13A—H13B0.9900
N9A—C8A1.337 (2)C13A—C12A1.510 (3)
C5—C61.420 (2)C12A—H12A1.0000
C5—C41.368 (2)C12—H121.0000
C17—C181.402 (2)C12—C131.515 (8)
C17—C161.392 (2)C12—C21A1.514 (9)
C19—C181.386 (2)C13—H13C0.9900
C19—C201.410 (2)C13—H13D0.9900
C15—C201.416 (2)C22A—H22A0.9500
C15—C161.382 (2)C22A—C21A1.391 (11)
C18—H180.9500C21A—C26A1.370 (10)
C20—C141.447 (2)C26A—H26A0.9500
C16—H160.9500C26A—C25A1.355 (9)
C5A—C6A1.418 (2)C25A—H25A0.9500
C19—O11—C12A115.28 (14)H1BD—C1—H1BE107.3
C19—O11—C12117.3 (2)H1BD—C1—H1BF97.2
C17—O17—H17110.0H1BE—C1—H1BF130.2
C15—O15—H15105.1O14—C14—C20122.60 (16)
C24—O24—C27116.49 (15)O14—C14—C13A121.67 (17)
C23—O23—H23110.8O14—C14—C13120.5 (3)
C4—N3—C2119.71 (14)C20—C14—C13A115.14 (16)
C4—N3—C3119.94 (14)C20—C14—C13114.5 (3)
C2—N3—C3120.35 (14)N7—C8—N9112.98 (15)
C6—N1—C2126.48 (14)N7—C8—H8123.5
C6—N1—C1117.25 (13)N9—C8—H8123.5
C2—N1—C1116.27 (13)O2A—C2A—N1A119.99 (16)
C6A—N1A—C1A116.58 (14)O2A—C2A—N3A122.24 (16)
C2A—N1A—C6A126.34 (14)N3A—C2A—N1A117.77 (15)
C2A—N1A—C1A117.05 (14)N1A—C1A—H1AD109.5
C5A—N7A—H7A125.4N1A—C1A—H1AE109.5
C8A—N7A—C5A106.08 (14)N1A—C1A—H1AF109.5
C8A—N7A—H7A128.4H1AD—C1A—H1AE109.5
C5—N7—H7128.7H1AD—C1A—H1AF109.5
C8—N7—C5106.60 (14)H1AE—C1A—H1AF109.5
C8—N7—H7124.5N3—C3—H3A109.5
C4A—N3A—C3A121.64 (15)N3—C3—H3B109.5
C2A—N3A—C4A119.28 (14)N3—C3—H3C109.5
C2A—N3A—C3A118.95 (15)H3A—C3—H3B109.5
C8—N9—C4103.59 (14)H3A—C3—H3C109.5
C8A—N9A—C4A103.20 (14)H3B—C3—H3C109.5
N7—C5—C6132.16 (15)C24—C25—H25118.6
C4—C5—N7105.25 (14)C24—C25—C26122.8 (4)
C4—C5—C6122.56 (15)C26—C25—H25118.6
O17—C17—C18121.80 (15)C23—C22—H22121.0
O17—C17—C16116.51 (15)C23—C22—C21118.0 (3)
C16—C17—C18121.69 (15)C21—C22—H22121.0
O11—C19—C18117.07 (14)C22—C21—C26119.4 (3)
O11—C19—C20121.65 (14)C22—C21—C12A119.1 (3)
C18—C19—C20121.28 (15)C26—C21—C12A121.1 (3)
O15—C15—C20119.74 (15)C25—C26—H26120.2
O15—C15—C16118.82 (15)C21—C26—C25119.6 (3)
C16—C15—C20121.45 (15)C21—C26—H26120.2
C17—C18—H18120.6N3A—C3A—H3AA109.5
C19—C18—C17118.72 (15)N3A—C3A—H3AB109.5
C19—C18—H18120.6N3A—C3A—H3AC109.5
C19—C20—C15118.00 (14)H3AA—C3A—H3AB109.5
C19—C20—C14120.84 (15)H3AA—C3A—H3AC109.5
C15—C20—C14121.12 (15)H3AB—C3A—H3AC109.5
C17—C16—H16120.6O24—C27—H27A109.5
C15—C16—C17118.87 (15)O24—C27—H27B109.5
C15—C16—H16120.6O24—C27—H27C109.5
N7A—C5A—C6A131.38 (15)H27A—C27—H27B109.5
C4A—C5A—N7A105.30 (15)H27A—C27—H27C109.5
C4A—C5A—C6A123.32 (16)H27B—C27—H27C109.5
O6—C6—N1120.72 (15)C14—C13A—H13A109.8
O6—C6—C5127.15 (15)C14—C13A—H13B109.8
N1—C6—C5112.13 (14)C14—C13A—C12A109.56 (19)
N9—C4—N3126.27 (15)H13A—C13A—H13B108.2
N9—C4—C5111.58 (14)C12A—C13A—H13A109.8
C5—C4—N3122.15 (15)C12A—C13A—H13B109.8
O6A—C6A—N1A120.88 (15)O11—C12A—C21108.71 (19)
O6A—C6A—C5A127.60 (16)O11—C12A—C13A112.03 (19)
N1A—C6A—C5A111.52 (14)O11—C12A—H12A107.8
O2—C2—N3121.90 (15)C21—C12A—H12A107.8
O2—C2—N1121.16 (15)C13A—C12A—C21112.5 (2)
N3—C2—N1116.94 (14)C13A—C12A—H12A107.8
N9A—C4A—N3A126.45 (15)O11—C12—H12106.6
N9A—C4A—C5A111.87 (15)O11—C12—C13111.0 (5)
C5A—C4A—N3A121.68 (15)O11—C12—C21A112.3 (4)
O23—C23—C24121.53 (15)C13—C12—H12106.6
O23—C23—C22114.0 (2)C21A—C12—H12106.6
O23—C23—C22A130.2 (4)C21A—C12—C13113.3 (5)
C24—C23—C22A108.1 (4)C14—C13—H13C110.7
C22—C23—C24124.5 (2)C14—C13—H13D110.7
O24—C24—C23114.70 (15)C12—C13—C14105.4 (5)
O24—C24—C25A117.41 (15)C12—C13—H13C110.7
C23—C24—C25A127.88 (15)C12—C13—H13D110.7
C25—C24—O24129.6 (3)H13C—C13—H13D108.8
C25—C24—C23115.7 (3)C23—C22A—H22A117.1
N7A—C8A—H8A123.2C21A—C22A—C23125.8 (7)
N9A—C8A—N7A113.55 (15)C21A—C22A—H22A117.1
N9A—C8A—H8A123.2C22A—C21A—C12121.4 (9)
N1—C1—H1AA109.5C26A—C21A—C12117.6 (7)
N1—C1—H1AB109.5C26A—C21A—C22A120.7 (8)
N1—C1—H1AC109.5C21A—C26A—H26A119.6
N1—C1—H1BD102.0C25A—C26A—C21A120.8 (7)
N1—C1—H1BE108.8C25A—C26A—H26A119.6
N1—C1—H1BF107.3C24—C25A—H25A121.8
H1AA—C1—H1AB109.5C26A—C25A—C24116.4 (4)
H1AA—C1—H1AC109.5C26A—C25A—H25A121.8
H1AB—C1—H1AC109.5
O11—C19—C18—C17179.82 (14)C4A—N3A—C2A—O2A177.77 (16)
O11—C19—C20—C15179.32 (14)C4A—N3A—C2A—N1A2.6 (2)
O11—C19—C20—C141.5 (2)C4A—N9A—C8A—N7A0.1 (2)
O11—C12—C13—C1460.0 (6)C4A—C5A—C6A—O6A179.37 (17)
O11—C12—C21A—C22A78.9 (8)C4A—C5A—C6A—N1A0.8 (2)
O11—C12—C21A—C26A107.0 (7)C23—C24—C25—C263.1 (4)
O17—C17—C18—C19179.73 (15)C23—C24—C25A—C26A2.0 (5)
O17—C17—C16—C15179.63 (14)C23—C22—C21—C263.0 (4)
O15—C15—C20—C19178.57 (14)C23—C22—C21—C12A169.9 (2)
O15—C15—C20—C140.7 (2)C23—C22A—C21A—C12173.0 (6)
O15—C15—C16—C17179.17 (15)C23—C22A—C21A—C26A1.0 (13)
O24—C24—C25—C26173.8 (2)C24—C23—C22—C212.6 (4)
O24—C24—C25A—C26A177.0 (4)C24—C23—C22A—C21A3.9 (9)
O14—C14—C13A—C12A150.4 (2)C24—C25—C26—C212.7 (4)
O14—C14—C13—C12152.9 (4)C8A—N7A—C5A—C6A179.85 (18)
O23—C23—C24—O241.8 (3)C8A—N7A—C5A—C4A0.37 (18)
O23—C23—C24—C25179.2 (2)C8A—N9A—C4A—N3A179.87 (16)
O23—C23—C24—C25A179.13 (16)C8A—N9A—C4A—C5A0.37 (19)
O23—C23—C22—C21176.3 (2)C1—N1—C6—O60.0 (2)
O23—C23—C22A—C21A178.8 (6)C1—N1—C6—C5179.65 (13)
N7A—C5A—C6A—O6A0.4 (3)C1—N1—C2—O20.3 (2)
N7A—C5A—C6A—N1A179.44 (16)C1—N1—C2—N3179.29 (13)
N7A—C5A—C4A—N3A179.75 (15)C14—C13A—C12A—O1158.0 (3)
N7A—C5A—C4A—N9A0.47 (19)C14—C13A—C12A—C21179.1 (2)
N7—C5—C6—O60.7 (3)C8—N7—C5—C6177.87 (18)
N7—C5—C6—N1178.88 (16)C8—N7—C5—C40.01 (18)
N7—C5—C4—N3179.65 (15)C8—N9—C4—N3179.52 (16)
N7—C5—C4—N90.19 (19)C8—N9—C4—C50.31 (19)
C5—N7—C8—N90.2 (2)C2A—N1A—C6A—O6A177.34 (16)
C19—O11—C12A—C21173.4 (2)C2A—N1A—C6A—C5A2.8 (2)
C19—O11—C12A—C13A48.4 (2)C2A—N3A—C4A—N9A179.39 (16)
C19—O11—C12—C1350.0 (6)C2A—N3A—C4A—C5A0.9 (2)
C19—O11—C12—C21A178.0 (5)C1A—N1A—C6A—O6A0.8 (2)
C19—C20—C14—O14178.71 (17)C1A—N1A—C6A—C5A179.02 (15)
C19—C20—C14—C13A10.0 (3)C1A—N1A—C2A—O2A1.6 (2)
C19—C20—C14—C1316.3 (4)C1A—N1A—C2A—N3A178.01 (15)
C15—C20—C14—O143.5 (3)C3—N3—C4—N92.4 (3)
C15—C20—C14—C13A167.75 (19)C3—N3—C4—C5177.39 (16)
C15—C20—C14—C13165.9 (3)C3—N3—C2—O21.8 (2)
C18—C17—C16—C150.5 (2)C3—N3—C2—N1178.61 (15)
C18—C19—C20—C150.8 (2)C22—C23—C24—O24176.9 (2)
C18—C19—C20—C14178.62 (15)C22—C23—C24—C250.4 (3)
C20—C19—C18—C170.3 (2)C22—C21—C26—C250.6 (4)
C20—C15—C16—C170.1 (2)C22—C21—C12A—O11116.1 (3)
C20—C14—C13A—C12A38.2 (3)C22—C21—C12A—C13A119.2 (3)
C20—C14—C13—C1244.3 (5)C26—C21—C12A—O1171.1 (3)
C16—C17—C18—C190.4 (2)C26—C21—C12A—C13A53.5 (3)
C16—C15—C20—C190.7 (2)C3A—N3A—C4A—N9A3.5 (3)
C16—C15—C20—C14178.52 (16)C3A—N3A—C4A—C5A176.79 (17)
C5A—N7A—C8A—N9A0.2 (2)C3A—N3A—C2A—O2A1.7 (3)
C6—N1—C2—O2179.83 (15)C3A—N3A—C2A—N1A178.65 (16)
C6—N1—C2—N30.3 (2)C27—O24—C24—C23165.02 (18)
C6—C5—C4—N32.2 (3)C27—O24—C24—C2511.9 (3)
C6—C5—C4—N9177.92 (15)C27—O24—C24—C25A14.1 (2)
C4—N3—C2—O2179.02 (15)C12A—O11—C19—C18161.55 (16)
C4—N3—C2—N10.5 (2)C12A—O11—C19—C2018.4 (2)
C4—N9—C8—N70.3 (2)C12A—C21—C26—C25172.2 (2)
C4—C5—C6—O6178.29 (16)C12—O11—C19—C18161.9 (3)
C4—C5—C6—N11.3 (2)C12—O11—C19—C2018.1 (3)
C6A—N1A—C2A—O2A176.53 (17)C12—C21A—C26A—C25A169.0 (5)
C6A—N1A—C2A—N3A3.8 (3)C13—C12—C21A—C22A47.8 (9)
C6A—C5A—C4A—N3A0.0 (3)C13—C12—C21A—C26A126.3 (7)
C6A—C5A—C4A—N9A179.72 (15)C22A—C23—C24—O24173.6 (4)
C2—N3—C4—N9178.41 (15)C22A—C23—C24—C25A5.4 (5)
C2—N3—C4—C51.8 (2)C22A—C21A—C26A—C25A5.1 (12)
C2—N1—C6—O6179.53 (15)C21A—C12—C13—C14172.6 (5)
C2—N1—C6—C50.1 (2)C21A—C26A—C25A—C243.7 (9)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
O23—H23···O240.892.232.6841 (19)111
N7A—H7A···N91.001.802.801 (2)173
O15—H15···O140.861.772.5712 (18)154
N7—H7···O6i0.901.832.7045 (18)164
O17—H17···O2A0.911.762.6756 (18)177
Symmetry code: (i) x+1, y+2, z+1.
8-Chloro-1,3-dimethyl-7H-purine-2,6-dione–3,5,7-trihydroxy-2-(4-hydroxyphenyl)-4H-1-benzopyran-4-one (2a-ywj65cult100k_auto) top
Crystal data top
C7H7ClN4O2·C15H10O6F(000) = 1032
Mr = 500.85Dx = 1.598 Mg m3
Monoclinic, P21/nCu Kα radiation, λ = 1.54184 Å
a = 10.14353 (15) ÅCell parameters from 5518 reflections
b = 19.7196 (3) Åθ = 4.2–74.7°
c = 10.42202 (19) ŵ = 2.18 mm1
β = 93.0362 (14)°T = 100 K
V = 2081.75 (6) Å3Needle, colourless
Z = 40.2 × 0.08 × 0.04 mm
Data collection top
Agilent SuperNova Dual Source
diffractometer with an Atlas detector
4177 independent reflections
Radiation source: micro-focus sealed X-ray tube, SuperNova (Cu) X-ray Source3533 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.030
Detector resolution: 10.3577 pixels mm-1θmax = 74.9°, θmin = 4.5°
ω scansh = 128
Absorption correction: multi-scan
(CrysAlis PRO; Rigaku OD, 2022)
k = 2423
Tmin = 0.705, Tmax = 1.000l = 1211
12088 measured reflections
Refinement top
Refinement on F2Primary atom site location: iterative
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.036H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.100 w = 1/[σ2(Fo2) + (0.0563P)2 + 0.5825P]
where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max = 0.001
4177 reflectionsΔρmax = 0.25 e Å3
338 parametersΔρmin = 0.38 e Å3
0 restraints
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
Cl80.77141 (4)0.33918 (2)0.42698 (4)0.02520 (12)
O111.00921 (10)0.05831 (6)0.31784 (10)0.0205 (2)
O131.17840 (13)0.10283 (7)0.29520 (13)0.0316 (3)
O60.31031 (10)0.48646 (6)0.53932 (11)0.0217 (2)
O240.56534 (13)0.14433 (7)0.44625 (13)0.0314 (3)
O171.14151 (12)0.28596 (6)0.27053 (12)0.0264 (3)
O141.37244 (12)0.01475 (7)0.24898 (12)0.0311 (3)
N70.55291 (12)0.39977 (7)0.49178 (12)0.0185 (3)
O151.45391 (11)0.11163 (7)0.21924 (12)0.0297 (3)
C80.61478 (15)0.34083 (8)0.47805 (15)0.0196 (3)
O20.10117 (11)0.28677 (6)0.61856 (12)0.0262 (3)
N90.54381 (12)0.28594 (7)0.50348 (12)0.0192 (3)
N30.31595 (12)0.27929 (7)0.56928 (13)0.0196 (3)
N10.20696 (12)0.38574 (7)0.57840 (12)0.0187 (3)
C250.68197 (16)0.04410 (9)0.40628 (16)0.0243 (3)
H250.6042430.0188580.4201770.029*
C60.31701 (14)0.42419 (8)0.54912 (14)0.0179 (3)
C121.03122 (16)0.01037 (8)0.32052 (15)0.0212 (3)
C260.79599 (16)0.01107 (8)0.37480 (15)0.0224 (3)
H260.7957230.0369280.3669660.027*
C220.90991 (17)0.11794 (8)0.36761 (16)0.0242 (3)
H220.9876710.1434700.3553800.029*
C201.23312 (15)0.08105 (8)0.26736 (15)0.0214 (3)
C10.08172 (15)0.42128 (8)0.59713 (16)0.0219 (3)
H1A0.0160940.4077820.5295520.033*
H1B0.0960380.4703670.5929910.033*
H1C0.0497150.4093540.6812920.033*
C171.16810 (15)0.21858 (9)0.26986 (15)0.0217 (3)
C131.15267 (16)0.03498 (8)0.29476 (16)0.0238 (3)
C30.31327 (17)0.20483 (8)0.57409 (17)0.0259 (4)
H3A0.3012020.1867580.4866700.039*
H3B0.2400570.1899640.6249750.039*
H3C0.3967660.1881210.6138470.039*
C141.26073 (16)0.00991 (9)0.26826 (15)0.0239 (3)
C181.07171 (15)0.17089 (8)0.29452 (15)0.0203 (3)
H180.9846100.1844640.3120050.024*
C20.20300 (15)0.31553 (8)0.59072 (15)0.0197 (3)
C151.32883 (15)0.13117 (9)0.24321 (15)0.0235 (3)
C50.42901 (15)0.38299 (8)0.52990 (14)0.0181 (3)
C210.91253 (15)0.04733 (8)0.35414 (14)0.0212 (3)
C230.79546 (17)0.15107 (9)0.39853 (16)0.0259 (4)
H230.7952610.1990510.4066970.031*
C240.68125 (17)0.11472 (9)0.41764 (15)0.0244 (3)
C40.42668 (15)0.31383 (8)0.53601 (14)0.0182 (3)
C161.29724 (16)0.19896 (9)0.24328 (15)0.0242 (3)
H161.3617300.2321290.2256090.029*
C191.10638 (15)0.10333 (8)0.29281 (14)0.0198 (3)
H70.590 (2)0.4409 (11)0.4832 (19)0.030 (5)*
H240.578 (2)0.1845 (13)0.457 (2)0.041 (7)*
H171.065 (3)0.2906 (13)0.297 (2)0.041 (6)*
H151.450 (3)0.0663 (15)0.221 (3)0.057 (8)*
H131.260 (3)0.1042 (15)0.278 (3)0.064 (9)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
Cl80.01687 (18)0.0218 (2)0.0373 (2)0.00008 (13)0.00453 (15)0.00172 (15)
O110.0187 (5)0.0176 (5)0.0252 (6)0.0011 (4)0.0014 (4)0.0008 (4)
O130.0300 (7)0.0246 (7)0.0405 (7)0.0112 (5)0.0054 (5)0.0007 (5)
O60.0200 (5)0.0159 (5)0.0293 (6)0.0001 (4)0.0023 (4)0.0004 (4)
O240.0309 (6)0.0231 (7)0.0403 (7)0.0062 (5)0.0022 (5)0.0063 (6)
O170.0225 (6)0.0216 (6)0.0355 (7)0.0026 (5)0.0047 (5)0.0009 (5)
O140.0229 (6)0.0375 (7)0.0332 (7)0.0111 (5)0.0035 (5)0.0012 (5)
N70.0164 (6)0.0172 (6)0.0218 (6)0.0010 (5)0.0005 (5)0.0009 (5)
O150.0156 (5)0.0399 (8)0.0337 (7)0.0028 (5)0.0032 (5)0.0034 (6)
C80.0165 (7)0.0208 (8)0.0213 (7)0.0003 (6)0.0002 (6)0.0014 (6)
O20.0212 (5)0.0207 (6)0.0374 (7)0.0021 (4)0.0083 (5)0.0004 (5)
N90.0176 (6)0.0194 (7)0.0207 (6)0.0011 (5)0.0004 (5)0.0002 (5)
N30.0185 (6)0.0156 (7)0.0249 (7)0.0010 (5)0.0031 (5)0.0005 (5)
N10.0176 (6)0.0167 (7)0.0218 (6)0.0001 (5)0.0018 (5)0.0014 (5)
C250.0242 (8)0.0241 (9)0.0245 (8)0.0001 (6)0.0000 (6)0.0001 (6)
C60.0182 (7)0.0185 (8)0.0168 (7)0.0004 (6)0.0004 (5)0.0015 (5)
C120.0242 (7)0.0199 (8)0.0191 (7)0.0038 (6)0.0017 (6)0.0015 (6)
C260.0260 (8)0.0170 (8)0.0240 (8)0.0008 (6)0.0002 (6)0.0010 (6)
C220.0289 (8)0.0206 (8)0.0226 (8)0.0031 (6)0.0023 (6)0.0007 (6)
C200.0177 (7)0.0283 (9)0.0179 (7)0.0034 (6)0.0020 (6)0.0023 (6)
C10.0160 (7)0.0213 (8)0.0284 (8)0.0015 (6)0.0020 (6)0.0006 (6)
C170.0206 (7)0.0258 (8)0.0186 (7)0.0010 (6)0.0009 (6)0.0016 (6)
C130.0259 (8)0.0215 (8)0.0235 (8)0.0063 (6)0.0015 (6)0.0004 (6)
C30.0270 (8)0.0147 (8)0.0368 (9)0.0001 (6)0.0073 (7)0.0014 (6)
C140.0208 (7)0.0313 (9)0.0194 (7)0.0075 (6)0.0015 (6)0.0031 (6)
C180.0171 (7)0.0241 (8)0.0197 (7)0.0013 (6)0.0005 (6)0.0020 (6)
C20.0196 (7)0.0186 (8)0.0212 (7)0.0011 (6)0.0024 (6)0.0003 (6)
C150.0155 (7)0.0357 (9)0.0192 (7)0.0028 (6)0.0006 (6)0.0032 (7)
C50.0173 (7)0.0184 (8)0.0184 (7)0.0010 (6)0.0003 (6)0.0007 (5)
C210.0245 (8)0.0219 (8)0.0167 (7)0.0000 (6)0.0018 (6)0.0004 (6)
C230.0352 (9)0.0188 (8)0.0232 (8)0.0019 (7)0.0028 (7)0.0018 (6)
C240.0289 (8)0.0239 (9)0.0199 (8)0.0063 (6)0.0025 (6)0.0023 (6)
C40.0182 (7)0.0191 (7)0.0171 (7)0.0002 (6)0.0007 (5)0.0010 (6)
C160.0183 (7)0.0317 (9)0.0225 (8)0.0046 (6)0.0001 (6)0.0018 (6)
C190.0174 (7)0.0243 (8)0.0174 (7)0.0003 (6)0.0016 (5)0.0014 (6)
Geometric parameters (Å, º) top
Cl8—C81.7024 (16)C6—C51.420 (2)
O11—C121.373 (2)C12—C131.364 (2)
O11—C191.3620 (19)C12—C211.466 (2)
O13—C131.363 (2)C26—H260.9500
O13—H130.85 (3)C26—C211.408 (2)
O6—C61.2337 (19)C22—H220.9500
O24—C241.360 (2)C22—C211.400 (2)
O24—H240.81 (3)C22—C231.385 (2)
O17—C171.356 (2)C20—C141.431 (2)
O17—H170.84 (3)C20—C151.417 (2)
O14—C141.259 (2)C20—C191.397 (2)
N7—C81.332 (2)C1—H1A0.9800
N7—C51.3784 (19)C1—H1B0.9800
N7—H70.90 (2)C1—H1C0.9800
O15—C151.3617 (19)C17—C181.390 (2)
O15—H150.89 (3)C17—C161.407 (2)
C8—N91.334 (2)C13—C141.447 (2)
O2—C21.2266 (19)C3—H3A0.9800
N9—C41.368 (2)C3—H3B0.9800
N3—C31.469 (2)C3—H3C0.9800
N3—C21.379 (2)C18—H180.9500
N3—C41.374 (2)C18—C191.378 (2)
N1—C61.3965 (19)C15—C161.375 (3)
N1—C11.4729 (19)C5—C41.366 (2)
N1—C21.391 (2)C23—H230.9500
C25—H250.9500C23—C241.386 (3)
C25—C261.382 (2)C16—H160.9500
C25—C241.398 (2)
C19—O11—C12121.90 (12)C18—C17—C16121.43 (15)
C13—O13—H13103 (2)O13—C13—C12121.55 (16)
C24—O24—H24108.7 (18)O13—C13—C14117.02 (14)
C17—O17—H17107.1 (17)C12—C13—C14121.42 (15)
C8—N7—C5105.27 (13)N3—C3—H3A109.5
C8—N7—H7124.9 (14)N3—C3—H3B109.5
C5—N7—H7129.7 (14)N3—C3—H3C109.5
C15—O15—H15103.4 (18)H3A—C3—H3B109.5
N7—C8—Cl8120.21 (12)H3A—C3—H3C109.5
N7—C8—N9115.10 (14)H3B—C3—H3C109.5
N9—C8—Cl8124.67 (12)O14—C14—C20123.73 (16)
C8—N9—C4101.99 (13)O14—C14—C13119.45 (16)
C2—N3—C3119.70 (13)C20—C14—C13116.82 (14)
C4—N3—C3121.39 (13)C17—C18—H18121.0
C4—N3—C2118.79 (13)C19—C18—C17117.97 (14)
C6—N1—C1118.40 (13)C19—C18—H18121.0
C2—N1—C6126.00 (13)O2—C2—N3121.07 (15)
C2—N1—C1115.60 (12)O2—C2—N1120.72 (14)
C26—C25—H25120.1N3—C2—N1118.20 (13)
C26—C25—C24119.86 (16)O15—C15—C20119.27 (16)
C24—C25—H25120.1O15—C15—C16119.66 (16)
O6—C6—N1121.15 (13)C16—C15—C20121.08 (14)
O6—C6—C5126.80 (14)N7—C5—C6130.69 (14)
N1—C6—C5112.02 (13)C4—C5—N7105.76 (13)
O11—C12—C21111.14 (13)C4—C5—C6123.31 (14)
C13—C12—O11119.65 (15)C26—C21—C12119.41 (15)
C13—C12—C21129.21 (16)C22—C21—C12122.60 (15)
C25—C26—H26119.4C22—C21—C26117.99 (15)
C25—C26—C21121.13 (15)C22—C23—H23119.8
C21—C26—H26119.4C22—C23—C24120.46 (16)
C21—C22—H22119.6C24—C23—H23119.8
C23—C22—H22119.6O24—C24—C25117.05 (16)
C23—C22—C21120.87 (16)O24—C24—C23123.27 (16)
C15—C20—C14123.32 (15)C23—C24—C25119.67 (16)
C19—C20—C14119.26 (15)N9—C4—N3126.56 (14)
C19—C20—C15117.41 (15)C5—C4—N9111.88 (14)
N1—C1—H1A109.5C5—C4—N3121.55 (14)
N1—C1—H1B109.5C17—C16—H16120.4
N1—C1—H1C109.5C15—C16—C17119.13 (15)
H1A—C1—H1B109.5C15—C16—H16120.4
H1A—C1—H1C109.5O11—C19—C20120.93 (15)
H1B—C1—H1C109.5O11—C19—C18116.10 (14)
O17—C17—C18121.32 (14)C18—C19—C20122.98 (15)
O17—C17—C16117.25 (15)
Cl8—C8—N9—C4178.10 (11)C1—N1—C2—N3177.52 (13)
O11—C12—C13—O13179.37 (14)C17—C18—C19—O11179.80 (13)
O11—C12—C13—C141.9 (2)C17—C18—C19—C200.1 (2)
O11—C12—C21—C261.8 (2)C13—C12—C21—C26178.93 (16)
O11—C12—C21—C22177.83 (14)C13—C12—C21—C221.5 (3)
O13—C13—C14—O141.1 (2)C3—N3—C2—O22.8 (2)
O13—C13—C14—C20179.74 (14)C3—N3—C2—N1176.48 (14)
O6—C6—C5—N73.0 (3)C3—N3—C4—N90.4 (2)
O6—C6—C5—C4176.45 (15)C3—N3—C4—C5179.18 (14)
O17—C17—C18—C19179.66 (14)C14—C20—C15—O150.1 (2)
O17—C17—C16—C15179.20 (14)C14—C20—C15—C16179.92 (15)
N7—C8—N9—C40.04 (17)C14—C20—C19—O110.3 (2)
N7—C5—C4—N90.04 (17)C14—C20—C19—C18179.64 (15)
N7—C5—C4—N3178.89 (13)C18—C17—C16—C150.8 (2)
O15—C15—C16—C17179.16 (14)C2—N3—C4—N9175.54 (14)
C8—N7—C5—C6174.36 (15)C2—N3—C4—C53.2 (2)
C8—N7—C5—C40.01 (16)C2—N1—C6—O6179.45 (15)
C8—N9—C4—N3178.81 (14)C2—N1—C6—C51.1 (2)
C8—N9—C4—C50.04 (17)C15—C20—C14—O140.7 (3)
N1—C6—C5—N7175.25 (14)C15—C20—C14—C13179.86 (14)
N1—C6—C5—C41.8 (2)C15—C20—C19—O11179.54 (13)
C25—C26—C21—C12179.81 (14)C15—C20—C19—C180.4 (2)
C25—C26—C21—C220.6 (2)C5—N7—C8—Cl8178.21 (11)
C6—N1—C2—O2178.98 (14)C5—N7—C8—N90.02 (18)
C6—N1—C2—N31.8 (2)C21—C12—C13—O131.4 (3)
C6—C5—C4—N9174.91 (13)C21—C12—C13—C14177.38 (15)
C6—C5—C4—N34.0 (2)C21—C22—C23—C240.4 (2)
C12—O11—C19—C200.7 (2)C23—C22—C21—C12179.50 (14)
C12—O11—C19—C18179.24 (14)C23—C22—C21—C260.9 (2)
C12—C13—C14—O14177.75 (15)C24—C25—C26—C210.2 (2)
C12—C13—C14—C201.5 (2)C4—N3—C2—O2178.79 (14)
C26—C25—C24—O24178.69 (14)C4—N3—C2—N10.4 (2)
C26—C25—C24—C230.7 (2)C16—C17—C18—C190.3 (2)
C22—C23—C24—O24178.97 (15)C19—O11—C12—C131.5 (2)
C22—C23—C24—C250.4 (2)C19—O11—C12—C21177.91 (12)
C20—C15—C16—C171.0 (2)C19—C20—C14—O14178.54 (15)
C1—N1—C6—O60.2 (2)C19—C20—C14—C130.6 (2)
C1—N1—C6—C5178.16 (13)C19—C20—C15—O15179.35 (14)
C1—N1—C2—O21.7 (2)C19—C20—C15—C160.8 (2)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
C22—H22···O130.952.222.880 (2)126
N7—H7···O6i0.90 (2)1.77 (2)2.6666 (17)170 (2)
O24—H24···N90.81 (3)2.09 (3)2.8661 (19)160 (2)
O17—H17···O2ii0.84 (3)1.94 (3)2.7745 (17)169 (2)
O15—H15···O140.89 (3)1.81 (3)2.649 (2)155 (3)
O13—H13···O140.85 (3)2.13 (3)2.6876 (19)122 (3)
Symmetry codes: (i) x+1, y+1, z+1; (ii) x+1, y, z+1.
8-Chloro-1,3-dimethyl-7H-purine-2,6-dione–3,5,7-trihydroxy-2-(3,4,5-trihydroxyphenyl)-4H-1-benzopyran-4-one (2c-ywj68cult100k_auto) top
Crystal data top
C7H7ClN4O2·C15H10O8Z = 2
Mr = 532.84F(000) = 548
Triclinic, P1Dx = 1.660 Mg m3
a = 7.7588 (5) ÅCu Kα radiation, λ = 1.54184 Å
b = 10.6363 (7) ÅCell parameters from 3860 reflections
c = 13.4366 (7) Åθ = 3.4–74.6°
α = 78.246 (5)°µ = 2.24 mm1
β = 81.294 (5)°T = 100 K
γ = 81.946 (5)°Block, colourless
V = 1066.24 (12) Å30.22 × 0.15 × 0.1 mm
Data collection top
Agilent SuperNova Dual Source
diffractometer with an Atlas detector
4156 independent reflections
Radiation source: micro-focus sealed X-ray tube, SuperNova (Cu) X-ray Source3656 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.029
Detector resolution: 5.1788 pixels mm-1θmax = 75.0°, θmin = 3.4°
ω scansh = 89
Absorption correction: multi-scan
(CrysAlis PRO; Rigaku OD, 2022)
k = 1013
Tmin = 0.481, Tmax = 1.000l = 1316
6593 measured reflections
Refinement top
Refinement on F2Primary atom site location: iterative
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.038H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.105 w = 1/[σ2(Fo2) + (0.0612P)2 + 0.1084P]
where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max = 0.001
4156 reflectionsΔρmax = 0.33 e Å3
364 parametersΔρmin = 0.38 e Å3
0 restraints
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
N10.25019 (18)0.76093 (13)0.83107 (11)0.0151 (3)
C10.3481 (2)0.64524 (15)0.88525 (13)0.0180 (3)
H1A0.3573720.6569940.9546390.027*
H1B0.4659610.6318720.8480210.027*
H1C0.2863190.5697490.8891880.027*
O20.36089 (16)0.69364 (12)0.68134 (10)0.0207 (3)
C20.2687 (2)0.77462 (16)0.72439 (13)0.0162 (3)
N30.17811 (19)0.88064 (14)0.67097 (11)0.0180 (3)
C30.1977 (3)0.9006 (2)0.55891 (14)0.0309 (4)
H3A0.1608000.8265810.5378420.046*
H3B0.3209080.9089490.5315740.046*
H3C0.1246380.9795590.5323420.046*
C40.0752 (2)0.96730 (16)0.72275 (13)0.0163 (3)
C50.0612 (2)0.95288 (15)0.82731 (12)0.0144 (3)
O60.13096 (17)0.82032 (11)0.98382 (9)0.0189 (3)
C60.1454 (2)0.84519 (15)0.88890 (13)0.0147 (3)
N70.05829 (19)1.05458 (13)0.85188 (11)0.0161 (3)
H70.085 (4)1.082 (3)0.912 (2)0.043 (8)*
Cl80.24487 (6)1.25846 (4)0.75369 (3)0.02111 (12)
C80.1020 (2)1.12134 (15)0.76166 (13)0.0164 (3)
N90.02718 (19)1.07314 (14)0.68015 (11)0.0182 (3)
O110.97342 (15)0.39769 (10)0.34534 (8)0.0137 (2)
C121.0428 (2)0.42084 (15)0.24452 (12)0.0124 (3)
O131.06961 (16)0.56163 (11)0.08335 (9)0.0173 (3)
C130.9959 (2)0.53509 (15)0.18225 (12)0.0129 (3)
O140.81959 (16)0.73495 (11)0.16023 (9)0.0164 (2)
C140.8677 (2)0.63139 (15)0.22022 (12)0.0126 (3)
O150.63394 (17)0.81282 (11)0.32009 (9)0.0187 (3)
C150.6872 (2)0.69633 (15)0.37549 (12)0.0137 (3)
C160.6290 (2)0.66810 (15)0.47814 (13)0.0152 (3)
H160.5521540.7297980.5104190.018*
O170.62691 (17)0.51509 (11)0.63595 (9)0.0189 (3)
C170.6844 (2)0.54652 (15)0.53534 (12)0.0149 (3)
C180.8014 (2)0.45605 (15)0.49093 (12)0.0150 (3)
H180.8401340.3750840.5303840.018*
C190.8597 (2)0.48765 (15)0.38762 (12)0.0129 (3)
C200.8045 (2)0.60609 (15)0.32661 (12)0.0135 (3)
C211.1649 (2)0.31125 (14)0.21722 (12)0.0125 (3)
C221.2417 (2)0.22428 (15)0.29541 (12)0.0133 (3)
H221.2149750.2376490.3641090.016*
O231.43286 (16)0.03918 (12)0.35102 (9)0.0177 (3)
C231.3565 (2)0.11864 (14)0.27326 (12)0.0133 (3)
O241.51057 (16)0.00680 (11)0.15546 (9)0.0169 (2)
C241.3939 (2)0.09712 (14)0.17314 (12)0.0134 (3)
O251.35292 (17)0.14967 (12)0.00043 (9)0.0197 (3)
C251.3129 (2)0.18198 (15)0.09547 (12)0.0136 (3)
C261.2010 (2)0.28978 (14)0.11602 (12)0.0132 (3)
H261.1494350.3483590.0623600.016*
H241.515 (3)0.016 (2)0.099 (2)0.020 (6)*
H150.678 (4)0.808 (3)0.259 (2)0.035 (7)*
H131.065 (4)0.638 (3)0.063 (2)0.039 (7)*
H251.293 (4)0.197 (3)0.043 (3)0.051 (9)*
H231.481 (4)0.028 (3)0.337 (2)0.037 (7)*
H170.535 (4)0.578 (3)0.657 (3)0.055 (9)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
N10.0154 (7)0.0135 (6)0.0154 (7)0.0000 (5)0.0023 (5)0.0013 (5)
C10.0181 (8)0.0148 (7)0.0195 (8)0.0020 (6)0.0046 (6)0.0005 (6)
O20.0176 (6)0.0251 (6)0.0197 (6)0.0036 (5)0.0020 (5)0.0090 (5)
C20.0135 (8)0.0192 (8)0.0162 (8)0.0018 (6)0.0021 (6)0.0036 (6)
N30.0177 (7)0.0217 (7)0.0128 (7)0.0018 (6)0.0019 (5)0.0022 (5)
C30.0354 (11)0.0393 (11)0.0119 (8)0.0162 (8)0.0033 (7)0.0043 (7)
C40.0155 (8)0.0167 (7)0.0158 (8)0.0018 (6)0.0024 (6)0.0008 (6)
C50.0142 (8)0.0127 (7)0.0158 (8)0.0002 (6)0.0016 (6)0.0026 (6)
O60.0277 (7)0.0146 (5)0.0131 (5)0.0019 (5)0.0031 (5)0.0020 (4)
C60.0154 (8)0.0133 (7)0.0158 (7)0.0028 (6)0.0016 (6)0.0032 (6)
N70.0190 (7)0.0122 (6)0.0165 (7)0.0008 (5)0.0034 (5)0.0023 (5)
Cl80.0233 (2)0.01376 (19)0.0251 (2)0.00315 (14)0.00780 (16)0.00098 (15)
C80.0175 (8)0.0127 (7)0.0184 (8)0.0008 (6)0.0050 (6)0.0000 (6)
N90.0173 (7)0.0177 (7)0.0179 (7)0.0002 (5)0.0039 (5)0.0001 (5)
O110.0157 (6)0.0110 (5)0.0122 (5)0.0036 (4)0.0013 (4)0.0007 (4)
C120.0123 (7)0.0130 (7)0.0120 (7)0.0006 (6)0.0022 (6)0.0026 (6)
O130.0244 (6)0.0115 (5)0.0126 (5)0.0029 (4)0.0009 (5)0.0002 (4)
C130.0133 (8)0.0126 (7)0.0130 (7)0.0001 (6)0.0030 (6)0.0028 (6)
O140.0215 (6)0.0114 (5)0.0139 (5)0.0036 (4)0.0036 (5)0.0007 (4)
C140.0132 (8)0.0111 (7)0.0138 (7)0.0002 (5)0.0045 (6)0.0015 (5)
O150.0247 (7)0.0130 (5)0.0147 (6)0.0080 (5)0.0026 (5)0.0005 (4)
C150.0140 (8)0.0116 (7)0.0148 (7)0.0024 (6)0.0054 (6)0.0012 (6)
C160.0164 (8)0.0127 (7)0.0154 (7)0.0043 (6)0.0038 (6)0.0028 (6)
O170.0237 (6)0.0166 (5)0.0126 (5)0.0046 (5)0.0008 (5)0.0008 (4)
C170.0166 (8)0.0141 (7)0.0130 (7)0.0012 (6)0.0029 (6)0.0013 (6)
C180.0175 (8)0.0117 (7)0.0142 (7)0.0025 (6)0.0030 (6)0.0006 (6)
C190.0122 (7)0.0122 (7)0.0146 (7)0.0017 (5)0.0030 (6)0.0041 (6)
C200.0131 (8)0.0118 (7)0.0150 (7)0.0010 (6)0.0028 (6)0.0019 (6)
C210.0113 (7)0.0095 (6)0.0163 (7)0.0002 (5)0.0020 (6)0.0018 (5)
C220.0142 (8)0.0131 (7)0.0121 (7)0.0002 (6)0.0020 (6)0.0019 (6)
O230.0235 (6)0.0146 (6)0.0128 (5)0.0086 (5)0.0060 (5)0.0017 (4)
C230.0133 (8)0.0113 (7)0.0143 (7)0.0001 (6)0.0044 (6)0.0007 (6)
O240.0216 (6)0.0146 (5)0.0128 (6)0.0081 (4)0.0043 (5)0.0039 (4)
C240.0137 (8)0.0102 (7)0.0155 (7)0.0017 (6)0.0019 (6)0.0024 (6)
O250.0270 (7)0.0178 (6)0.0120 (5)0.0103 (5)0.0054 (5)0.0038 (4)
C250.0154 (8)0.0131 (7)0.0120 (7)0.0001 (6)0.0024 (6)0.0026 (6)
C260.0140 (8)0.0115 (7)0.0131 (7)0.0006 (6)0.0037 (6)0.0001 (5)
Geometric parameters (Å, º) top
N1—C11.470 (2)O14—C141.2715 (19)
N1—C21.398 (2)C14—C201.423 (2)
N1—C61.399 (2)O15—C151.3542 (19)
C1—H1A0.9800O15—H150.84 (3)
C1—H1B0.9800C15—C161.370 (2)
C1—H1C0.9800C15—C201.418 (2)
O2—C21.222 (2)C16—H160.9500
C2—N31.372 (2)C16—C171.410 (2)
N3—C31.465 (2)O17—C171.347 (2)
N3—C41.363 (2)O17—H170.96 (3)
C3—H3A0.9800C17—C181.390 (2)
C3—H3B0.9800C18—H180.9500
C3—H3C0.9800C18—C191.381 (2)
C4—C51.371 (2)C19—C201.406 (2)
C4—N91.360 (2)C21—C221.398 (2)
C5—C61.411 (2)C21—C261.405 (2)
C5—N71.382 (2)C22—H220.9500
O6—C61.240 (2)C22—C231.386 (2)
N7—H70.90 (3)O23—C231.3580 (19)
N7—C81.340 (2)O23—H230.80 (3)
Cl8—C81.6991 (17)C23—C241.391 (2)
C8—N91.324 (2)O24—C241.3635 (19)
O11—C121.3659 (19)O24—H240.78 (3)
O11—C191.3602 (19)C24—C251.398 (2)
C12—C131.365 (2)O25—C251.369 (2)
C12—C211.467 (2)O25—H250.84 (3)
O13—C131.355 (2)C25—C261.386 (2)
O13—H130.80 (3)C26—H260.9500
C13—C141.440 (2)
C2—N1—C1115.68 (14)O14—C14—C13120.17 (15)
C2—N1—C6125.80 (14)O14—C14—C20122.92 (15)
C6—N1—C1118.51 (14)C20—C14—C13116.88 (14)
N1—C1—H1A109.5C15—O15—H15104.2 (19)
N1—C1—H1B109.5O15—C15—C16119.54 (15)
N1—C1—H1C109.5O15—C15—C20119.46 (14)
H1A—C1—H1B109.5C16—C15—C20120.99 (14)
H1A—C1—H1C109.5C15—C16—H16120.4
H1B—C1—H1C109.5C15—C16—C17119.29 (15)
O2—C2—N1120.63 (15)C17—C16—H16120.4
O2—C2—N3121.84 (16)C17—O17—H17111 (2)
N3—C2—N1117.53 (15)O17—C17—C16120.66 (14)
C2—N3—C3119.29 (15)O17—C17—C18117.73 (14)
C4—N3—C2119.55 (14)C18—C17—C16121.61 (15)
C4—N3—C3121.14 (15)C17—C18—H18121.1
N3—C3—H3A109.5C19—C18—C17117.86 (14)
N3—C3—H3B109.5C19—C18—H18121.1
N3—C3—H3C109.5O11—C19—C18117.05 (14)
H3A—C3—H3B109.5O11—C19—C20120.24 (14)
H3A—C3—H3C109.5C18—C19—C20122.70 (15)
H3B—C3—H3C109.5C15—C20—C14122.80 (14)
N3—C4—C5121.88 (15)C19—C20—C14119.70 (15)
N9—C4—N3125.73 (15)C19—C20—C15117.50 (15)
N9—C4—C5112.36 (15)C22—C21—C12118.38 (14)
C4—C5—C6122.59 (15)C22—C21—C26119.84 (14)
C4—C5—N7105.28 (14)C26—C21—C12121.74 (14)
N7—C5—C6131.86 (15)C21—C22—H22119.8
N1—C6—C5112.56 (14)C23—C22—C21120.35 (15)
O6—C6—N1120.57 (15)C23—C22—H22119.8
O6—C6—C5126.85 (16)C23—O23—H23114 (2)
C5—N7—H7129 (2)C22—C23—C24120.18 (14)
C8—N7—C5104.78 (14)O23—C23—C22118.36 (14)
C8—N7—H7125.2 (19)O23—C23—C24121.44 (14)
N7—C8—Cl8121.67 (14)C24—O24—H24110.4 (18)
N9—C8—N7115.62 (15)C23—C24—C25119.42 (15)
N9—C8—Cl8122.71 (13)O24—C24—C23117.66 (14)
C8—N9—C4101.95 (14)O24—C24—C25122.92 (15)
C19—O11—C12121.66 (12)C25—O25—H25112 (2)
O11—C12—C21111.79 (13)O25—C25—C24114.95 (14)
C13—C12—O11120.48 (14)O25—C25—C26124.01 (14)
C13—C12—C21127.73 (15)C26—C25—C24121.04 (15)
C13—O13—H13111 (2)C21—C26—H26120.4
C12—C13—C14120.83 (15)C25—C26—C21119.12 (14)
O13—C13—C12121.06 (14)C25—C26—H26120.4
O13—C13—C14118.10 (14)
N1—C2—N3—C3178.28 (16)C12—C21—C22—C23179.36 (14)
N1—C2—N3—C40.0 (2)C12—C21—C26—C25177.73 (14)
C1—N1—C2—O20.2 (2)O13—C13—C14—O143.6 (2)
C1—N1—C2—N3179.38 (14)O13—C13—C14—C20174.38 (13)
C1—N1—C6—C5179.09 (13)C13—C12—C21—C22158.11 (15)
C1—N1—C6—O62.4 (2)C13—C12—C21—C2624.1 (2)
O2—C2—N3—C32.6 (3)C13—C14—C20—C15175.60 (14)
O2—C2—N3—C4179.15 (15)C13—C14—C20—C193.9 (2)
C2—N1—C6—C52.4 (2)O14—C14—C20—C152.4 (2)
C2—N1—C6—O6176.10 (15)O14—C14—C20—C19178.11 (14)
C2—N3—C4—C51.0 (2)O15—C15—C16—C17179.77 (14)
C2—N3—C4—N9176.99 (15)O15—C15—C20—C141.1 (2)
N3—C4—C5—C62.8 (2)O15—C15—C20—C19178.47 (13)
N3—C4—C5—N7177.53 (14)C15—C16—C17—O17178.78 (14)
N3—C4—N9—C8178.27 (16)C15—C16—C17—C182.2 (2)
C3—N3—C4—C5177.25 (17)C16—C15—C20—C14179.84 (15)
C3—N3—C4—N94.8 (3)C16—C15—C20—C190.6 (2)
C4—C5—C6—N13.3 (2)C16—C17—C18—C191.4 (2)
C4—C5—C6—O6175.06 (16)O17—C17—C18—C19179.55 (14)
C4—C5—N7—C81.19 (17)C17—C18—C19—O11179.66 (14)
C5—C4—N9—C80.14 (18)C17—C18—C19—C200.4 (2)
C5—N7—C8—Cl8178.79 (12)C18—C19—C20—C14179.00 (14)
C5—N7—C8—N91.43 (19)C18—C19—C20—C151.5 (2)
C6—N1—C2—O2178.30 (15)C19—O11—C12—C131.6 (2)
C6—N1—C2—N30.8 (2)C19—O11—C12—C21178.59 (13)
C6—C5—N7—C8175.19 (17)C20—C15—C16—C171.1 (2)
N7—C5—C6—N1176.45 (15)C21—C12—C13—O133.2 (2)
N7—C5—C6—O61.9 (3)C21—C12—C13—C14177.36 (14)
N7—C8—N9—C40.99 (19)C21—C22—C23—O23177.69 (14)
Cl8—C8—N9—C4179.23 (12)C21—C22—C23—C241.1 (2)
N9—C4—C5—C6175.37 (14)C22—C21—C26—C250.0 (2)
N9—C4—C5—N70.68 (18)C22—C23—C24—O24178.68 (14)
O11—C12—C13—O13177.00 (13)C22—C23—C24—C250.8 (2)
O11—C12—C13—C142.5 (2)O23—C23—C24—O240.1 (2)
O11—C12—C21—C2222.06 (19)O23—C23—C24—C25179.62 (14)
O11—C12—C21—C26155.70 (14)C23—C24—C25—O25177.55 (14)
O11—C19—C20—C140.2 (2)C23—C24—C25—C262.4 (2)
O11—C19—C20—C15179.36 (13)O24—C24—C25—O253.0 (2)
C12—O11—C19—C18178.06 (13)O24—C24—C25—C26177.07 (14)
C12—O11—C19—C202.7 (2)C24—C25—C26—C212.0 (2)
C12—C13—C14—O14176.87 (14)O25—C25—C26—C21177.98 (14)
C12—C13—C14—C205.1 (2)C26—C21—C22—C231.6 (2)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N7—H7···O6i0.90 (3)1.88 (3)2.7518 (19)165 (3)
O24—H24···O25ii0.78 (3)2.20 (3)2.8272 (17)139 (2)
O24—H24···O250.78 (3)2.32 (2)2.7191 (17)113 (2)
O15—H15···O140.84 (3)1.82 (3)2.6131 (17)155 (3)
O25—H25···O14iii0.84 (3)1.89 (3)2.7004 (17)164 (3)
O23—H23···O15iv0.80 (3)1.96 (3)2.7500 (17)168 (3)
O17—H17···O20.96 (3)1.74 (3)2.6891 (18)174 (3)
Symmetry codes: (i) x, y+2, z+2; (ii) x+3, y, z; (iii) x+2, y+1, z; (iv) x+1, y1, z.
8-Bromo-1,3-dimethyl-7H-purine-2,6-dione–3,5,7-trihydroxy-2-(4-hydroxyphenyl)-4H-1-benzopyran-4-one (3a_ywj75cult100k_auto) top
Crystal data top
C7H7BrN4O2·C15H10O6F(000) = 1104
Mr = 545.30Dx = 1.724 Mg m3
Monoclinic, P21/nCu Kα radiation, λ = 1.54184 Å
a = 10.1578 (1) ÅCell parameters from 5868 reflections
b = 19.8059 (3) Åθ = 4.5–74.9°
c = 10.4534 (1) ŵ = 3.22 mm1
β = 92.539 (1)°T = 100 K
V = 2101.00 (4) Å3Block, colourless
Z = 40.2 × 0.1 × 0.08 mm
Data collection top
Agilent SuperNova Dual Source
diffractometer with an Atlas detector
4220 independent reflections
Radiation source: micro-focus sealed X-ray tube, SuperNova (Cu) X-ray Source3606 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.029
Detector resolution: 10.3577 pixels mm-1θmax = 74.5°, θmin = 4.5°
ω scansh = 1211
Absorption correction: multi-scan
(CrysAlis PRO; Rigaku OD, 2022)
k = 2424
Tmin = 0.871, Tmax = 1.000l = 713
12439 measured reflections
Refinement top
Refinement on F2Primary atom site location: dual
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.032H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.086 w = 1/[σ2(Fo2) + (0.0439P)2 + 1.328P]
where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max = 0.001
4220 reflectionsΔρmax = 0.42 e Å3
334 parametersΔρmin = 0.43 e Å3
4 restraints
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
Br80.28312 (2)0.84226 (2)0.59619 (2)0.02291 (9)
O110.51187 (15)0.55919 (8)0.32110 (15)0.0184 (3)
O60.18889 (15)0.98561 (8)0.46024 (15)0.0203 (3)
O20.39863 (16)0.78601 (8)0.39101 (17)0.0239 (4)
O170.64299 (17)0.78660 (8)0.28399 (17)0.0234 (4)
O130.68049 (19)0.39920 (9)0.28718 (18)0.0297 (4)
O150.95566 (16)0.61447 (10)0.22180 (17)0.0276 (4)
O140.87450 (17)0.48809 (9)0.24441 (17)0.0296 (4)
O240.06844 (19)0.35537 (10)0.44004 (19)0.0297 (4)
N70.05272 (17)0.90020 (9)0.51581 (17)0.0163 (4)
H70.0840290.9411180.5268270.020*
N10.29208 (17)0.88506 (9)0.42487 (17)0.0165 (4)
N30.18375 (18)0.77908 (9)0.44156 (18)0.0176 (4)
N90.04319 (18)0.78687 (9)0.51047 (18)0.0173 (4)
C80.1144 (2)0.84183 (11)0.5338 (2)0.0169 (4)
C210.4156 (2)0.45348 (12)0.3518 (2)0.0196 (4)
C120.5340 (2)0.49060 (11)0.3195 (2)0.0193 (4)
C50.0711 (2)0.88287 (11)0.4761 (2)0.0169 (4)
C220.2991 (2)0.48896 (12)0.3749 (2)0.0215 (5)
H220.2988280.5368460.3697240.026*
C20.2965 (2)0.81502 (11)0.4177 (2)0.0183 (4)
C170.6700 (2)0.71970 (12)0.2802 (2)0.0194 (4)
C180.5737 (2)0.67150 (11)0.3029 (2)0.0181 (4)
H180.4866190.6845400.3215140.022*
C190.6087 (2)0.60457 (11)0.2976 (2)0.0176 (4)
C10.4166 (2)0.92066 (11)0.4025 (2)0.0202 (5)
H1A0.4818300.9095770.4711350.030*
H1B0.4009220.9694820.4014260.030*
H1C0.4496910.9065520.3199810.030*
C30.1874 (2)0.70499 (11)0.4455 (2)0.0236 (5)
H3A0.2689260.6889900.4088170.035*
H3B0.1114140.6868390.3957310.035*
H3C0.1844510.6897060.5344500.035*
C40.0726 (2)0.81405 (11)0.4742 (2)0.0170 (4)
C230.1852 (2)0.45568 (12)0.4049 (2)0.0230 (5)
H230.1075170.4806340.4200390.028*
C60.1824 (2)0.92365 (11)0.4534 (2)0.0161 (4)
C200.7350 (2)0.58267 (12)0.2696 (2)0.0197 (4)
C130.6551 (2)0.46702 (12)0.2911 (2)0.0223 (5)
C260.4129 (2)0.38311 (12)0.3621 (2)0.0231 (5)
H260.4908140.3580040.3487180.028*
C140.7633 (2)0.51180 (12)0.2664 (2)0.0224 (5)
C240.1840 (2)0.38491 (12)0.4131 (2)0.0229 (5)
C250.2987 (3)0.34937 (12)0.3914 (2)0.0242 (5)
H250.2988280.3014870.3967100.029*
C150.8309 (2)0.63320 (13)0.2479 (2)0.0222 (5)
C160.7988 (2)0.70103 (13)0.2518 (2)0.0224 (5)
H160.8629030.7344880.2355080.027*
H130.753 (3)0.3987 (16)0.270 (3)0.035 (9)*
H170.578 (3)0.7922 (16)0.306 (3)0.030 (9)*
H240.079 (4)0.3196 (14)0.444 (3)0.044 (11)*
H150.950 (3)0.5736 (14)0.222 (3)0.039 (10)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
Br80.01464 (13)0.02006 (14)0.03439 (15)0.00009 (9)0.00507 (9)0.00118 (10)
O110.0142 (7)0.0154 (7)0.0256 (8)0.0015 (6)0.0024 (6)0.0008 (6)
O60.0169 (8)0.0132 (7)0.0309 (9)0.0005 (6)0.0031 (6)0.0010 (6)
O20.0168 (8)0.0174 (8)0.0383 (9)0.0035 (6)0.0096 (7)0.0005 (7)
O170.0166 (9)0.0199 (8)0.0342 (9)0.0019 (7)0.0060 (7)0.0030 (7)
O130.0241 (10)0.0235 (9)0.0421 (11)0.0122 (7)0.0078 (8)0.0019 (8)
O150.0126 (8)0.0366 (11)0.0339 (10)0.0041 (7)0.0047 (7)0.0015 (8)
O140.0208 (9)0.0325 (10)0.0360 (10)0.0135 (7)0.0057 (7)0.0009 (8)
O240.0280 (10)0.0204 (9)0.0409 (11)0.0065 (8)0.0031 (8)0.0057 (8)
N70.0114 (8)0.0145 (9)0.0233 (9)0.0004 (7)0.0025 (7)0.0015 (7)
N10.0130 (9)0.0146 (9)0.0222 (9)0.0008 (7)0.0030 (7)0.0017 (7)
N30.0144 (9)0.0138 (9)0.0248 (9)0.0014 (7)0.0051 (7)0.0007 (7)
N90.0131 (9)0.0166 (9)0.0221 (9)0.0000 (7)0.0011 (7)0.0008 (7)
C80.0111 (10)0.0183 (11)0.0212 (11)0.0003 (8)0.0012 (8)0.0012 (8)
C210.0211 (11)0.0201 (11)0.0174 (10)0.0012 (9)0.0005 (8)0.0001 (8)
C120.0224 (11)0.0168 (10)0.0186 (11)0.0034 (9)0.0006 (8)0.0001 (8)
C50.0137 (10)0.0175 (10)0.0196 (10)0.0035 (8)0.0006 (8)0.0001 (8)
C220.0233 (12)0.0166 (11)0.0245 (11)0.0002 (9)0.0010 (9)0.0012 (9)
C20.0182 (11)0.0159 (10)0.0208 (11)0.0000 (8)0.0031 (9)0.0006 (8)
C170.0174 (11)0.0223 (11)0.0186 (10)0.0007 (9)0.0001 (8)0.0021 (9)
C180.0107 (10)0.0234 (11)0.0201 (10)0.0017 (8)0.0014 (8)0.0023 (9)
C190.0146 (10)0.0216 (11)0.0166 (10)0.0014 (8)0.0001 (8)0.0018 (8)
C10.0144 (10)0.0183 (11)0.0281 (12)0.0018 (8)0.0044 (9)0.0010 (9)
C30.0224 (12)0.0133 (11)0.0357 (13)0.0005 (9)0.0077 (10)0.0020 (9)
C40.0149 (10)0.0173 (10)0.0185 (10)0.0009 (8)0.0002 (8)0.0005 (8)
C230.0210 (12)0.0209 (11)0.0272 (12)0.0006 (9)0.0029 (9)0.0005 (9)
C60.0140 (10)0.0160 (10)0.0184 (10)0.0018 (8)0.0007 (8)0.0011 (8)
C200.0141 (10)0.0253 (12)0.0196 (11)0.0041 (9)0.0003 (8)0.0008 (9)
C130.0235 (12)0.0215 (11)0.0217 (11)0.0074 (9)0.0001 (9)0.0009 (9)
C260.0256 (12)0.0184 (11)0.0252 (11)0.0033 (9)0.0006 (9)0.0003 (9)
C140.0191 (11)0.0281 (12)0.0200 (11)0.0077 (9)0.0009 (9)0.0014 (9)
C240.0280 (13)0.0205 (11)0.0200 (11)0.0055 (9)0.0008 (9)0.0038 (9)
C250.0330 (14)0.0165 (11)0.0228 (12)0.0014 (9)0.0006 (10)0.0022 (9)
C150.0127 (10)0.0347 (13)0.0193 (11)0.0022 (9)0.0009 (8)0.0022 (9)
C160.0150 (11)0.0294 (12)0.0227 (11)0.0041 (9)0.0012 (8)0.0015 (9)
Geometric parameters (Å, º) top
Br8—C81.860 (2)C12—C131.360 (3)
O11—C121.377 (3)C5—C41.363 (3)
O11—C191.363 (3)C5—C61.418 (3)
O6—C61.231 (3)C22—H220.9500
O2—C21.229 (3)C22—C231.380 (3)
O17—C171.354 (3)C17—C181.395 (3)
O17—H170.72 (3)C17—C161.403 (3)
O13—C131.369 (3)C18—H180.9500
O13—H130.76 (3)C18—C191.374 (3)
O15—C151.359 (3)C19—C201.398 (3)
O15—H150.81 (3)C1—H1A0.9800
O14—C141.254 (3)C1—H1B0.9800
O24—C241.353 (3)C1—H1C0.9800
O24—H240.72 (3)C3—H3A0.9800
N7—H70.8800C3—H3B0.9800
N7—C81.332 (3)C3—H3C0.9800
N7—C51.385 (3)C23—H230.9500
N1—C21.390 (3)C23—C241.404 (3)
N1—C11.476 (3)C20—C141.434 (3)
N1—C61.394 (3)C20—C151.422 (3)
N3—C21.380 (3)C13—C141.445 (3)
N3—C31.468 (3)C26—H260.9500
N3—C41.380 (3)C26—C251.385 (3)
N9—C81.335 (3)C24—C251.388 (3)
N9—C41.363 (3)C25—H250.9500
C21—C121.462 (3)C15—C161.384 (4)
C21—C221.406 (3)C16—H160.9500
C21—C261.398 (3)
C19—O11—C12121.92 (18)N1—C1—H1C109.5
C17—O17—H17111 (3)H1A—C1—H1B109.5
C13—O13—H13102 (2)H1A—C1—H1C109.5
C15—O15—H15102 (2)H1B—C1—H1C109.5
C24—O24—H24108 (3)N3—C3—H3A109.5
C8—N7—H7127.3N3—C3—H3B109.5
C8—N7—C5105.44 (18)N3—C3—H3C109.5
C5—N7—H7127.3H3A—C3—H3B109.5
C2—N1—C1116.01 (17)H3A—C3—H3C109.5
C2—N1—C6125.90 (18)H3B—C3—H3C109.5
C6—N1—C1118.07 (18)N9—C4—N3126.6 (2)
C2—N3—C3120.00 (18)N9—C4—C5112.38 (19)
C4—N3—C2118.68 (19)C5—C4—N3121.0 (2)
C4—N3—C3120.99 (18)C22—C23—H23120.0
C8—N9—C4102.13 (18)C22—C23—C24120.0 (2)
N7—C8—Br8119.46 (16)C24—C23—H23120.0
N7—C8—N9114.80 (19)O6—C6—N1121.19 (19)
N9—C8—Br8125.64 (16)O6—C6—C5126.8 (2)
C22—C21—C12119.7 (2)N1—C6—C5111.96 (19)
C26—C21—C12122.5 (2)C19—C20—C14119.7 (2)
C26—C21—C22117.8 (2)C19—C20—C15117.2 (2)
O11—C12—C21110.88 (19)C15—C20—C14123.1 (2)
C13—C12—O11119.4 (2)O13—C13—C14116.8 (2)
C13—C12—C21129.7 (2)C12—C13—O13121.1 (2)
N7—C5—C6130.6 (2)C12—C13—C14122.0 (2)
C4—C5—N7105.24 (19)C21—C26—H26119.4
C4—C5—C6123.9 (2)C25—C26—C21121.1 (2)
C21—C22—H22119.3C25—C26—H26119.4
C23—C22—C21121.4 (2)O14—C14—C20123.7 (2)
C23—C22—H22119.3O14—C14—C13120.1 (2)
O2—C2—N1120.5 (2)C20—C14—C13116.2 (2)
O2—C2—N3121.0 (2)O24—C24—C23117.0 (2)
N3—C2—N1118.44 (19)O24—C24—C25123.9 (2)
O17—C17—C18121.3 (2)C25—C24—C23119.1 (2)
O17—C17—C16117.1 (2)C26—C25—C24120.6 (2)
C18—C17—C16121.5 (2)C26—C25—H25119.7
C17—C18—H18121.0C24—C25—H25119.7
C19—C18—C17118.0 (2)O15—C15—C20119.4 (2)
C19—C18—H18121.0O15—C15—C16119.6 (2)
O11—C19—C18116.04 (19)C16—C15—C20120.9 (2)
O11—C19—C20120.6 (2)C17—C16—H16120.5
C18—C19—C20123.3 (2)C15—C16—C17119.1 (2)
N1—C1—H1A109.5C15—C16—H16120.5
N1—C1—H1B109.5
O11—C12—C13—O13179.2 (2)C17—C18—C19—O11179.64 (19)
O11—C12—C13—C142.0 (3)C17—C18—C19—C200.6 (3)
O11—C19—C20—C140.4 (3)C18—C17—C16—C150.8 (3)
O11—C19—C20—C15179.23 (19)C18—C19—C20—C14179.8 (2)
O17—C17—C18—C19179.9 (2)C18—C19—C20—C151.0 (3)
O17—C17—C16—C15179.6 (2)C19—O11—C12—C21178.10 (18)
O13—C13—C14—O141.0 (3)C19—O11—C12—C131.4 (3)
O13—C13—C14—C20179.4 (2)C19—C20—C14—O14178.6 (2)
O15—C15—C16—C17179.3 (2)C19—C20—C14—C130.9 (3)
O24—C24—C25—C26178.9 (2)C19—C20—C15—O15179.2 (2)
N7—C5—C4—N3178.38 (19)C19—C20—C15—C161.3 (3)
N7—C5—C4—N90.0 (2)C1—N1—C2—O21.7 (3)
N7—C5—C6—O63.2 (4)C1—N1—C2—N3178.16 (19)
N7—C5—C6—N1174.8 (2)C1—N1—C6—O60.2 (3)
C8—N7—C5—C40.2 (2)C1—N1—C6—C5178.34 (18)
C8—N7—C5—C6174.0 (2)C3—N3—C2—O25.0 (3)
C8—N9—C4—N3178.5 (2)C3—N3—C2—N1174.92 (19)
C8—N9—C4—C50.2 (2)C3—N3—C4—N91.1 (3)
C21—C12—C13—O131.4 (4)C3—N3—C4—C5177.0 (2)
C21—C12—C13—C14177.4 (2)C4—N3—C2—O2178.4 (2)
C21—C22—C23—C240.1 (4)C4—N3—C2—N11.4 (3)
C21—C26—C25—C240.9 (4)C4—N9—C8—Br8176.68 (16)
C12—O11—C19—C18179.60 (19)C4—N9—C8—N70.3 (3)
C12—O11—C19—C200.6 (3)C4—C5—C6—O6176.0 (2)
C12—C21—C22—C23179.6 (2)C4—C5—C6—N12.0 (3)
C12—C21—C26—C25179.2 (2)C23—C24—C25—C260.0 (4)
C12—C13—C14—O14177.8 (2)C6—N1—C2—O2179.6 (2)
C12—C13—C14—C201.8 (3)C6—N1—C2—N30.5 (3)
C5—N7—C8—Br8176.92 (15)C6—C5—C4—N34.0 (3)
C5—N7—C8—N90.3 (3)C6—C5—C4—N9174.3 (2)
C22—C21—C12—O112.1 (3)C20—C15—C16—C171.2 (3)
C22—C21—C12—C13178.5 (2)C26—C21—C12—O11177.4 (2)
C22—C21—C26—C251.3 (3)C26—C21—C12—C132.1 (4)
C22—C23—C24—O24178.6 (2)C26—C21—C22—C230.9 (3)
C22—C23—C24—C250.4 (4)C14—C20—C15—O150.4 (3)
C2—N1—C6—O6178.4 (2)C14—C20—C15—C16179.9 (2)
C2—N1—C6—C50.3 (3)C15—C20—C14—O140.1 (4)
C2—N3—C4—N9174.5 (2)C15—C20—C14—C13179.7 (2)
C2—N3—C4—C53.6 (3)C16—C17—C18—C190.5 (3)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N7—H7···O6i0.881.812.669 (2)165
O13—H13···O140.76 (3)2.18 (3)2.695 (3)125 (3)
O17—H17···O20.72 (3)2.06 (3)2.768 (2)166 (3)
O24—H24···N9ii0.72 (3)2.19 (3)2.878 (3)160 (4)
O15—H15···O140.81 (3)1.88 (3)2.649 (3)158 (3)
Symmetry codes: (i) x, y+2, z+1; (ii) x, y+1, z+1.
8-Bromo-1,3-dimethyl-7H-purine-2,6-dione–\ 3,5,7-trihydroxy-2-(3,4,5-trihydroxyphenyl)-4H-1-benzopyran-4-one (3c-ywj230_cu100k_auto) top
Crystal data top
C7H7BrN4O2·C15H10O8Z = 2
Mr = 577.30F(000) = 584
Triclinic, P1Dx = 1.776 Mg m3
a = 7.7841 (3) ÅCu Kα radiation, λ = 1.54184 Å
b = 10.7050 (5) ÅCell parameters from 3815 reflections
c = 13.4516 (6) Åθ = 3.4–74.5°
α = 78.741 (4)°µ = 3.25 mm1
β = 81.454 (4)°T = 100 K
γ = 81.657 (4)°Block, colourless
V = 1079.31 (8) Å30.09 × 0.06 × 0.05 mm
Data collection top
Agilent SuperNova Dual Source
diffractometer with an Atlas detector
4197 independent reflections
Radiation source: micro-focus sealed X-ray tube, SuperNova (Cu) X-ray Source3614 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.026
Detector resolution: 10.3577 pixels mm-1θmax = 74.9°, θmin = 3.4°
ω scansh = 96
Absorption correction: multi-scan
(CrysAlis PRO; Rigaku OD, 2023)
k = 1113
Tmin = 0.899, Tmax = 1.000l = 1616
6335 measured reflections
Refinement top
Refinement on F2Primary atom site location: iterative
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.036H-atom parameters constrained
wR(F2) = 0.097 w = 1/[σ2(Fo2) + (0.0524P)2 + 0.7157P]
where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.001
4197 reflectionsΔρmax = 1.08 e Å3
342 parametersΔρmin = 0.58 e Å3
0 restraints
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
N10.2507 (3)0.7598 (2)0.83167 (17)0.0145 (4)
C10.3504 (3)0.6455 (2)0.8854 (2)0.0171 (5)
H1A0.3633250.6591240.9537410.026*
H1B0.4662950.6306150.8468440.026*
H1C0.2877950.5707720.8913990.026*
O20.3597 (3)0.6902 (2)0.68281 (15)0.0218 (4)
C20.2674 (3)0.7713 (3)0.7249 (2)0.0169 (5)
N30.1753 (3)0.8760 (2)0.67180 (17)0.0190 (5)
C30.1903 (5)0.8923 (4)0.5599 (2)0.0340 (8)
H3A0.0733030.9125760.5380750.051*
H3B0.2475950.8127960.5379660.051*
H3C0.2599750.9625570.5292030.051*
C40.0730 (3)0.9628 (3)0.7231 (2)0.0157 (5)
C50.0602 (3)0.9506 (2)0.82806 (19)0.0138 (5)
O60.1319 (3)0.82084 (18)0.98406 (14)0.0188 (4)
C60.1460 (3)0.8442 (2)0.8893 (2)0.0142 (5)
N70.0594 (3)1.0519 (2)0.85167 (17)0.0154 (4)
H70.0971611.0705900.9126450.019*
Br80.26068 (4)1.26566 (3)0.75069 (2)0.02122 (10)
C80.1061 (3)1.1163 (2)0.7614 (2)0.0161 (5)
N90.0315 (3)1.0667 (2)0.68071 (18)0.0182 (5)
O110.9718 (2)0.40130 (16)0.34283 (13)0.0117 (3)
C121.0415 (3)0.4232 (2)0.24229 (18)0.0105 (4)
O131.0704 (2)0.56286 (17)0.08178 (13)0.0150 (4)
H131.0693020.6425330.0630850.023*
C130.9962 (3)0.5371 (2)0.18070 (18)0.0112 (4)
O140.8240 (2)0.73771 (17)0.15912 (13)0.0150 (4)
C140.8692 (3)0.6345 (2)0.21817 (19)0.0115 (5)
O150.6427 (3)0.81863 (17)0.31971 (14)0.0161 (4)
H150.6901310.8230660.2590230.024*
C150.6917 (3)0.7013 (2)0.37416 (19)0.0124 (5)
C160.6322 (3)0.6739 (2)0.4760 (2)0.0144 (5)
H160.5565030.7359770.5084630.017*
O170.6262 (3)0.52055 (18)0.63232 (14)0.0194 (4)
H170.5565690.5817740.6507940.029*
C170.6849 (3)0.5516 (2)0.53234 (19)0.0143 (5)
C180.7995 (3)0.4611 (2)0.48758 (19)0.0143 (5)
H180.8361990.3800770.5264240.017*
C190.8592 (3)0.4918 (2)0.38487 (18)0.0120 (5)
C200.8062 (3)0.6101 (2)0.32468 (19)0.0109 (5)
C211.1635 (3)0.3136 (2)0.21596 (18)0.0105 (4)
C221.2410 (3)0.2275 (2)0.29392 (19)0.0120 (5)
H221.2138740.2415250.3624020.014*
O231.4327 (3)0.04403 (18)0.35031 (14)0.0166 (4)
H231.4797100.0243680.3310200.025*
C231.3564 (3)0.1226 (2)0.27253 (19)0.0113 (5)
O241.5122 (2)0.00381 (17)0.15509 (14)0.0154 (4)
H241.5165020.0133950.0942300.023*
C241.3946 (3)0.1001 (2)0.17208 (19)0.0111 (5)
O251.3538 (3)0.14938 (18)0.00024 (14)0.0177 (4)
H251.2855610.1938520.0399110.026*
C251.3128 (3)0.1829 (2)0.09459 (18)0.0111 (4)
C261.2004 (3)0.2907 (2)0.11472 (18)0.0106 (4)
H261.1491420.3483900.0609990.013*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
N10.0147 (10)0.0144 (10)0.0140 (10)0.0004 (8)0.0000 (8)0.0036 (8)
C10.0155 (12)0.0135 (12)0.0201 (13)0.0017 (10)0.0021 (10)0.0006 (10)
O20.0180 (9)0.0278 (11)0.0201 (10)0.0043 (8)0.0003 (8)0.0121 (8)
C20.0136 (12)0.0211 (13)0.0165 (12)0.0012 (10)0.0006 (10)0.0067 (10)
N30.0188 (11)0.0249 (12)0.0118 (10)0.0011 (9)0.0006 (8)0.0035 (9)
C30.0382 (18)0.0441 (19)0.0118 (13)0.0185 (15)0.0007 (12)0.0050 (12)
C40.0146 (12)0.0176 (12)0.0143 (12)0.0035 (10)0.0004 (9)0.0010 (9)
C50.0143 (12)0.0134 (11)0.0131 (12)0.0009 (9)0.0006 (9)0.0023 (9)
O60.0294 (11)0.0137 (9)0.0119 (8)0.0012 (8)0.0021 (8)0.0020 (7)
C60.0148 (12)0.0130 (12)0.0150 (12)0.0018 (9)0.0006 (9)0.0036 (9)
N70.0198 (11)0.0109 (10)0.0152 (10)0.0003 (8)0.0016 (8)0.0031 (8)
Br80.02409 (16)0.01388 (15)0.02499 (16)0.00142 (10)0.00728 (11)0.00128 (10)
C80.0161 (12)0.0118 (11)0.0196 (13)0.0006 (9)0.0036 (10)0.0008 (9)
N90.0179 (11)0.0194 (11)0.0159 (11)0.0005 (9)0.0027 (9)0.0014 (9)
O110.0144 (8)0.0082 (8)0.0097 (8)0.0045 (6)0.0013 (6)0.0014 (6)
C120.0121 (11)0.0100 (11)0.0095 (11)0.0014 (9)0.0003 (9)0.0029 (9)
O130.0236 (10)0.0087 (8)0.0094 (8)0.0023 (7)0.0029 (7)0.0001 (6)
C130.0137 (11)0.0104 (11)0.0087 (11)0.0000 (9)0.0001 (9)0.0020 (9)
O140.0206 (9)0.0107 (8)0.0112 (8)0.0045 (7)0.0025 (7)0.0003 (6)
C140.0120 (11)0.0092 (11)0.0133 (12)0.0002 (9)0.0022 (9)0.0025 (9)
O150.0218 (9)0.0094 (8)0.0136 (8)0.0080 (7)0.0018 (7)0.0009 (7)
C150.0131 (11)0.0094 (11)0.0143 (12)0.0035 (9)0.0043 (9)0.0026 (9)
C160.0151 (12)0.0112 (11)0.0159 (12)0.0051 (9)0.0013 (9)0.0056 (9)
O170.0258 (10)0.0160 (9)0.0112 (9)0.0066 (8)0.0046 (7)0.0015 (7)
C170.0176 (12)0.0144 (12)0.0099 (11)0.0012 (9)0.0010 (9)0.0021 (9)
C180.0190 (12)0.0102 (11)0.0115 (11)0.0034 (9)0.0015 (10)0.0005 (9)
C190.0138 (11)0.0102 (11)0.0112 (11)0.0035 (9)0.0011 (9)0.0041 (9)
C200.0106 (11)0.0095 (11)0.0127 (11)0.0016 (9)0.0026 (9)0.0034 (9)
C210.0113 (11)0.0081 (10)0.0113 (11)0.0005 (9)0.0003 (9)0.0019 (8)
C220.0153 (12)0.0093 (11)0.0109 (11)0.0002 (9)0.0014 (9)0.0022 (9)
O230.0224 (10)0.0128 (8)0.0119 (8)0.0088 (7)0.0039 (7)0.0020 (7)
C230.0132 (11)0.0084 (11)0.0112 (11)0.0009 (9)0.0021 (9)0.0002 (8)
O240.0202 (9)0.0122 (8)0.0110 (8)0.0094 (7)0.0019 (7)0.0038 (7)
C240.0121 (11)0.0082 (11)0.0123 (11)0.0023 (9)0.0003 (9)0.0037 (9)
O250.0257 (10)0.0152 (9)0.0096 (8)0.0106 (7)0.0035 (7)0.0048 (7)
C250.0147 (11)0.0093 (11)0.0088 (11)0.0006 (9)0.0005 (9)0.0032 (8)
C260.0131 (11)0.0080 (10)0.0096 (11)0.0012 (9)0.0011 (9)0.0008 (8)
Geometric parameters (Å, º) top
N1—C11.472 (3)O14—C141.266 (3)
N1—C21.406 (3)C14—C201.430 (3)
N1—C61.397 (3)O15—H150.8400
C1—H1A0.9800O15—C151.358 (3)
C1—H1B0.9800C15—C161.368 (4)
C1—H1C0.9800C15—C201.420 (3)
O2—C21.216 (3)C16—H160.9500
C2—N31.374 (4)C16—C171.416 (3)
N3—C31.469 (4)O17—H170.8400
N3—C41.359 (4)O17—C171.347 (3)
C3—H3A0.9800C17—C181.384 (3)
C3—H3B0.9800C18—H180.9500
C3—H3C0.9800C18—C191.382 (3)
C4—C51.382 (4)C19—C201.406 (3)
C4—N91.361 (4)C21—C221.401 (3)
C5—C61.413 (4)C21—C261.411 (3)
C5—N71.378 (3)C22—H220.9500
O6—C61.242 (3)C22—C231.381 (3)
N7—H70.8800O23—H230.8400
N7—C81.346 (3)O23—C231.360 (3)
Br8—C81.852 (3)C23—C241.400 (3)
C8—N91.321 (4)O24—H240.8400
O11—C121.369 (3)O24—C241.367 (3)
O11—C191.359 (3)C24—C251.397 (3)
C12—C131.366 (3)O25—H250.8400
C12—C211.463 (3)O25—C251.372 (3)
O13—H130.8400C25—C261.389 (3)
O13—C131.362 (3)C26—H260.9500
C13—C141.441 (3)
C2—N1—C1115.4 (2)O14—C14—C13120.5 (2)
C6—N1—C1118.7 (2)O14—C14—C20123.0 (2)
C6—N1—C2125.9 (2)C20—C14—C13116.4 (2)
N1—C1—H1A109.5C15—O15—H15109.5
N1—C1—H1B109.5O15—C15—C16119.4 (2)
N1—C1—H1C109.5O15—C15—C20119.4 (2)
H1A—C1—H1B109.5C16—C15—C20121.2 (2)
H1A—C1—H1C109.5C15—C16—H16120.5
H1B—C1—H1C109.5C15—C16—C17119.1 (2)
O2—C2—N1120.3 (2)C17—C16—H16120.5
O2—C2—N3122.4 (3)C17—O17—H17109.5
N3—C2—N1117.3 (2)O17—C17—C16120.6 (2)
C2—N3—C3119.1 (2)O17—C17—C18117.8 (2)
C4—N3—C2119.7 (2)C18—C17—C16121.5 (2)
C4—N3—C3121.1 (2)C17—C18—H18120.9
N3—C3—H3A109.5C19—C18—C17118.2 (2)
N3—C3—H3B109.5C19—C18—H18120.9
N3—C3—H3C109.5O11—C19—C18117.0 (2)
H3A—C3—H3B109.5O11—C19—C20120.5 (2)
H3A—C3—H3C109.5C18—C19—C20122.5 (2)
H3B—C3—H3C109.5C15—C20—C14122.8 (2)
N3—C4—C5122.0 (2)C19—C20—C14119.7 (2)
N3—C4—N9125.7 (2)C19—C20—C15117.4 (2)
N9—C4—C5112.2 (2)C22—C21—C12118.9 (2)
C4—C5—C6122.2 (2)C22—C21—C26119.5 (2)
N7—C5—C4105.0 (2)C26—C21—C12121.6 (2)
N7—C5—C6132.5 (2)C21—C22—H22119.6
N1—C6—C5112.7 (2)C23—C22—C21120.9 (2)
O6—C6—N1120.8 (2)C23—C22—H22119.6
O6—C6—C5126.5 (2)C23—O23—H23109.5
C5—N7—H7127.4C22—C23—C24119.9 (2)
C8—N7—C5105.2 (2)O23—C23—C22118.7 (2)
C8—N7—H7127.4O23—C23—C24121.4 (2)
N7—C8—Br8122.4 (2)C24—O24—H24109.5
N9—C8—N7115.3 (2)O24—C24—C23117.4 (2)
N9—C8—Br8122.3 (2)O24—C24—C25123.1 (2)
C8—N9—C4102.3 (2)C25—C24—C23119.5 (2)
C19—O11—C12121.64 (19)C25—O25—H25109.5
O11—C12—C21111.5 (2)O25—C25—C24114.9 (2)
C13—C12—O11120.3 (2)O25—C25—C26124.1 (2)
C13—C12—C21128.2 (2)C26—C25—C24121.1 (2)
C13—O13—H13109.5C21—C26—H26120.4
C12—C13—C14121.3 (2)C25—C26—C21119.1 (2)
O13—C13—C12121.1 (2)C25—C26—H26120.4
O13—C13—C14117.7 (2)
N1—C2—N3—C3179.5 (3)C12—C21—C22—C23179.8 (2)
N1—C2—N3—C40.2 (4)C12—C21—C26—C25177.9 (2)
C1—N1—C2—O20.2 (4)O13—C13—C14—O142.9 (3)
C1—N1—C2—N3179.4 (2)O13—C13—C14—C20174.1 (2)
C1—N1—C6—C5179.0 (2)C13—C12—C21—C22156.8 (3)
C1—N1—C6—O62.7 (4)C13—C12—C21—C2625.1 (4)
O2—C2—N3—C31.0 (4)C13—C14—C20—C15174.8 (2)
O2—C2—N3—C4179.3 (3)C13—C14—C20—C194.6 (3)
C2—N1—C6—C52.9 (4)O14—C14—C20—C152.1 (4)
C2—N1—C6—O6175.4 (2)O14—C14—C20—C19178.5 (2)
C2—N3—C4—C51.1 (4)O15—C15—C16—C17179.6 (2)
C2—N3—C4—N9176.5 (3)O15—C15—C20—C141.9 (4)
N3—C4—C5—C63.1 (4)O15—C15—C20—C19177.5 (2)
N3—C4—C5—N7177.5 (2)C15—C16—C17—O17178.8 (2)
N3—C4—N9—C8177.9 (3)C15—C16—C17—C182.2 (4)
C3—N3—C4—C5178.6 (3)C16—C15—C20—C14179.1 (2)
C3—N3—C4—N93.8 (4)C16—C15—C20—C191.5 (4)
C4—C5—C6—N13.7 (4)C16—C17—C18—C191.5 (4)
C4—C5—C6—O6174.5 (3)O17—C17—C18—C19179.5 (2)
C4—C5—N7—C80.8 (3)C17—C18—C19—O11179.9 (2)
C5—C4—N9—C80.1 (3)C17—C18—C19—C200.8 (4)
C5—N7—C8—Br8177.87 (19)C18—C19—C20—C14178.3 (2)
C5—N7—C8—N91.0 (3)C18—C19—C20—C152.3 (4)
C6—N1—C2—O2178.3 (2)C19—O11—C12—C131.3 (3)
C6—N1—C2—N31.3 (4)C19—O11—C12—C21177.9 (2)
C6—C5—N7—C8174.4 (3)C20—C15—C16—C170.6 (4)
N7—C5—C6—N1176.4 (3)C21—C12—C13—O132.2 (4)
N7—C5—C6—O61.8 (5)C21—C12—C13—C14178.2 (2)
N7—C8—N9—C40.7 (3)C21—C22—C23—O23177.9 (2)
Br8—C8—N9—C4178.14 (19)C21—C22—C23—C241.1 (4)
N9—C4—C5—C6174.8 (2)C22—C21—C26—C250.2 (4)
N9—C4—C5—N70.4 (3)C22—C23—C24—O24178.8 (2)
O11—C12—C13—O13176.9 (2)C22—C23—C24—C251.2 (4)
O11—C12—C13—C142.7 (4)O23—C23—C24—O240.2 (4)
O11—C12—C21—C2222.4 (3)O23—C23—C24—C25179.8 (2)
O11—C12—C21—C26155.7 (2)C23—C24—C25—O25177.4 (2)
O11—C19—C20—C140.9 (4)C23—C24—C25—C263.1 (4)
O11—C19—C20—C15178.5 (2)O24—C24—C25—O252.5 (4)
C12—O11—C19—C18178.5 (2)O24—C24—C25—C26176.9 (2)
C12—O11—C19—C202.2 (3)C24—C25—C26—C212.6 (4)
C12—C13—C14—O14177.5 (2)O25—C25—C26—C21178.0 (2)
C12—C13—C14—C205.5 (3)C26—C21—C22—C231.6 (4)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N7—H7···O6i0.881.942.764 (3)154
O13—H13···O6ii0.842.082.892 (3)162
O15—H15···O140.841.872.623 (3)148
O17—H17···O20.841.832.652 (3)164
O23—H23···O15iii0.841.972.776 (3)161
O24—H24···O25iv0.842.162.829 (3)137
O25—H25···O14v0.841.902.707 (3)161
Symmetry codes: (i) x, y+2, z+2; (ii) x+1, y, z1; (iii) x+1, y1, z; (iv) x+3, y, z; (v) x+2, y+1, z.
8-Bromo-1,3-dimethyl-7H-purine-2,6-dione–\ 3,5,7-trihydroxy-2-(4-hydroxyphenyl)-4H-1-benzopyran-4-one–\ methanol (1/1/1) (3a_prime_ywj75e_mo100k_auto) top
Crystal data top
C7H7BrN4O2·C15H10O6·CH4OZ = 2
Mr = 577.35F(000) = 588
Triclinic, P1Dx = 1.679 Mg m3
a = 9.9847 (5) ÅMo Kα radiation, λ = 0.71073 Å
b = 10.6290 (4) ÅCell parameters from 5099 reflections
c = 12.1537 (4) Åθ = 2.6–29.4°
α = 67.509 (4)°µ = 1.86 mm1
β = 81.274 (3)°T = 100 K
γ = 73.675 (4)°Plate, yellow
V = 1142.27 (9) Å30.3 × 0.2 × 0.1 mm
Data collection top
Agilent SuperNova Dual Source
diffractometer with an Atlas detector
4532 independent reflections
Radiation source: micro-focus sealed X-ray tube, SuperNova (Mo) X-ray Source4048 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.035
Detector resolution: 10.3577 pixels mm-1θmax = 26.2°, θmin = 2.7°
ω scansh = 1012
Absorption correction: multi-scan
(CrysAlis PRO; Rigaku OD, 2023)
k = 1313
Tmin = 0.615, Tmax = 1.000l = 1513
7430 measured reflections
Refinement top
Refinement on F2Primary atom site location: iterative
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.029H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.066 w = 1/[σ2(Fo2) + (0.0292P)2 + 0.1784P]
where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
4532 reflectionsΔρmax = 0.49 e Å3
358 parametersΔρmin = 0.41 e Å3
0 restraints
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
Br81.11654 (2)0.02429 (2)0.35283 (2)0.01863 (7)
O20.83970 (14)0.48202 (14)0.00210 (11)0.0166 (3)
O60.93850 (14)0.61998 (14)0.40003 (11)0.0143 (3)
N10.90362 (16)0.54782 (16)0.19711 (13)0.0114 (3)
N30.92455 (16)0.30951 (16)0.07344 (13)0.0113 (3)
N71.02727 (16)0.30289 (17)0.36065 (14)0.0111 (3)
H71.037 (2)0.343 (2)0.440 (2)0.026 (6)*
N91.01693 (16)0.14336 (17)0.17544 (13)0.0130 (3)
C10.8756 (2)0.6934 (2)0.20379 (17)0.0149 (4)
H1A0.9209770.7476770.2768560.022*
H1B0.9123810.6954030.1343560.022*
H1C0.7745140.7343890.2046150.022*
C20.88648 (19)0.4483 (2)0.08491 (16)0.0112 (4)
C30.8923 (2)0.2045 (2)0.04003 (15)0.0150 (4)
H3A0.7916460.2275750.0596840.022*
H3B0.9432630.2040810.1030690.022*
H3C0.9203420.1115470.0333380.022*
C40.97289 (19)0.2756 (2)0.17358 (15)0.0108 (4)
C50.97805 (19)0.3762 (2)0.28415 (15)0.0107 (4)
C60.94075 (19)0.5218 (2)0.30441 (15)0.0104 (4)
C81.0483 (2)0.1672 (2)0.29070 (16)0.0130 (4)
O10.61742 (13)0.65416 (13)0.50867 (10)0.0114 (3)
O130.63675 (14)0.37551 (15)0.79999 (11)0.0137 (3)
H130.652 (3)0.292 (3)0.817 (2)0.036 (8)*
O140.71277 (14)0.22705 (14)0.65371 (11)0.0157 (3)
O150.76914 (16)0.21985 (15)0.43815 (13)0.0182 (3)
H150.764 (3)0.197 (3)0.503 (2)0.038 (9)*
O170.71225 (15)0.66086 (15)0.11745 (11)0.0176 (3)
H170.744 (2)0.609 (3)0.080 (2)0.026 (7)*
O240.44251 (14)0.98867 (14)0.85334 (11)0.0153 (3)
H240.4202780.9521320.9259450.023*
C120.60988 (19)0.5871 (2)0.63070 (15)0.0111 (4)
C130.64077 (19)0.4444 (2)0.67962 (16)0.0109 (4)
C140.68414 (19)0.3588 (2)0.60589 (16)0.0112 (4)
C150.73520 (19)0.3614 (2)0.39756 (16)0.0118 (4)
C160.74224 (19)0.4354 (2)0.27721 (16)0.0124 (4)
H160.7706220.3874390.2225660.015*
C170.70701 (19)0.5833 (2)0.23544 (16)0.0124 (4)
C180.66444 (19)0.6572 (2)0.31290 (16)0.0116 (4)
H180.6403470.7569360.2839370.014*
C190.65865 (18)0.5793 (2)0.43401 (15)0.0099 (4)
C200.69271 (19)0.4326 (2)0.47999 (16)0.0114 (4)
C210.56797 (19)0.6887 (2)0.69200 (16)0.0111 (4)
C220.52574 (19)0.6490 (2)0.81327 (16)0.0129 (4)
H220.5244930.5538300.8580000.016*
C230.4857 (2)0.7474 (2)0.86873 (16)0.0133 (4)
H230.4587300.7191190.9513020.016*
C240.48494 (19)0.8869 (2)0.80368 (16)0.0116 (4)
C250.5295 (2)0.9277 (2)0.68374 (16)0.0142 (4)
H250.5320811.0226620.6397820.017*
C260.5700 (2)0.8295 (2)0.62897 (16)0.0135 (4)
H260.5997210.8580350.5469970.016*
O1S0.36466 (15)0.90690 (14)1.08470 (11)0.0151 (3)
H1S0.429 (3)0.910 (3)1.120 (2)0.040 (8)*
C2S0.2464 (2)1.0199 (2)1.09085 (18)0.0192 (4)
H2SA0.1714791.0250291.0445790.029*
H2SB0.2747301.1088311.0579900.029*
H2SC0.2128501.0024211.1741700.029*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
Br80.03113 (14)0.01030 (11)0.01296 (11)0.00209 (9)0.00381 (8)0.00645 (8)
O20.0240 (8)0.0155 (8)0.0093 (7)0.0018 (6)0.0034 (5)0.0071 (6)
O60.0218 (8)0.0096 (7)0.0097 (7)0.0033 (6)0.0001 (5)0.0022 (6)
N10.0161 (9)0.0084 (8)0.0090 (8)0.0011 (7)0.0002 (6)0.0038 (7)
N30.0156 (9)0.0106 (9)0.0061 (7)0.0017 (7)0.0017 (6)0.0033 (6)
N70.0153 (9)0.0090 (8)0.0091 (8)0.0025 (7)0.0018 (6)0.0044 (7)
N90.0170 (9)0.0104 (9)0.0108 (8)0.0020 (7)0.0018 (6)0.0048 (7)
C10.0227 (11)0.0099 (10)0.0139 (9)0.0028 (8)0.0004 (8)0.0075 (8)
C20.0114 (10)0.0113 (10)0.0098 (9)0.0009 (8)0.0015 (7)0.0035 (8)
C30.0216 (11)0.0111 (10)0.0093 (9)0.0031 (8)0.0013 (8)0.0019 (8)
C40.0100 (10)0.0107 (10)0.0113 (9)0.0004 (8)0.0010 (7)0.0049 (8)
C50.0120 (10)0.0124 (10)0.0082 (9)0.0031 (8)0.0018 (7)0.0050 (8)
C60.0094 (10)0.0135 (10)0.0090 (9)0.0027 (8)0.0005 (7)0.0052 (8)
C80.0173 (10)0.0095 (10)0.0124 (9)0.0029 (8)0.0009 (7)0.0049 (8)
O10.0178 (7)0.0082 (7)0.0078 (6)0.0019 (6)0.0003 (5)0.0037 (5)
O130.0226 (8)0.0082 (8)0.0085 (6)0.0023 (6)0.0001 (5)0.0024 (6)
O140.0240 (8)0.0082 (7)0.0120 (7)0.0005 (6)0.0006 (5)0.0029 (6)
O150.0329 (9)0.0094 (7)0.0096 (7)0.0015 (6)0.0010 (6)0.0039 (6)
O170.0312 (9)0.0131 (8)0.0071 (7)0.0037 (6)0.0035 (6)0.0049 (6)
O240.0247 (8)0.0113 (7)0.0110 (7)0.0030 (6)0.0025 (6)0.0073 (6)
C120.0115 (10)0.0137 (10)0.0086 (9)0.0042 (8)0.0002 (7)0.0040 (8)
C130.0112 (10)0.0128 (10)0.0088 (9)0.0041 (8)0.0001 (7)0.0034 (8)
C140.0090 (10)0.0110 (10)0.0138 (9)0.0014 (8)0.0014 (7)0.0051 (8)
C150.0111 (10)0.0087 (10)0.0164 (9)0.0017 (8)0.0000 (7)0.0060 (8)
C160.0139 (10)0.0132 (10)0.0128 (9)0.0037 (8)0.0029 (7)0.0086 (8)
C170.0126 (10)0.0151 (10)0.0096 (9)0.0042 (8)0.0007 (7)0.0042 (8)
C180.0127 (10)0.0096 (10)0.0127 (9)0.0026 (8)0.0002 (7)0.0045 (8)
C190.0091 (9)0.0123 (10)0.0107 (9)0.0022 (8)0.0011 (7)0.0074 (8)
C200.0104 (10)0.0129 (10)0.0124 (9)0.0024 (8)0.0006 (7)0.0069 (8)
C210.0108 (10)0.0110 (10)0.0124 (9)0.0017 (8)0.0014 (7)0.0057 (8)
C220.0163 (10)0.0103 (10)0.0134 (9)0.0046 (8)0.0001 (7)0.0049 (8)
C230.0155 (10)0.0144 (10)0.0104 (9)0.0033 (8)0.0006 (7)0.0054 (8)
C240.0123 (10)0.0113 (10)0.0135 (9)0.0004 (8)0.0026 (7)0.0085 (8)
C250.0196 (11)0.0081 (10)0.0136 (9)0.0024 (8)0.0023 (8)0.0028 (8)
C260.0179 (10)0.0127 (10)0.0094 (9)0.0029 (8)0.0012 (7)0.0038 (8)
O1S0.0204 (8)0.0114 (7)0.0143 (7)0.0036 (6)0.0004 (6)0.0061 (6)
C2S0.0225 (11)0.0119 (11)0.0215 (10)0.0012 (9)0.0026 (8)0.0076 (9)
Geometric parameters (Å, º) top
Br8—C81.8655 (18)O17—C171.355 (2)
O2—C21.229 (2)O24—H240.8400
O6—C61.228 (2)O24—C241.371 (2)
N1—C11.465 (2)C12—C131.362 (3)
N1—C21.391 (2)C12—C211.471 (2)
N1—C61.409 (2)C13—C141.450 (2)
N3—C21.372 (2)C14—C201.430 (3)
N3—C31.463 (2)C15—C161.372 (3)
N3—C41.380 (2)C15—C201.424 (2)
N7—H70.90 (2)C16—H160.9500
N7—C51.383 (2)C16—C171.409 (3)
N7—C81.339 (2)C17—C181.393 (3)
N9—C41.358 (2)C18—H180.9500
N9—C81.328 (2)C18—C191.387 (3)
C1—H1A0.9800C19—C201.397 (3)
C1—H1B0.9800C21—C221.401 (3)
C1—H1C0.9800C21—C261.401 (3)
C3—H3A0.9800C22—H220.9500
C3—H3B0.9800C22—C231.390 (3)
C3—H3C0.9800C23—H230.9500
C4—C51.365 (3)C23—C241.386 (3)
C5—C61.417 (3)C24—C251.392 (3)
O1—C121.379 (2)C25—H250.9500
O1—C191.371 (2)C25—C261.382 (3)
O13—H130.80 (3)C26—H260.9500
O13—C131.363 (2)O1S—H1S0.83 (3)
O14—C141.258 (2)O1S—C2S1.444 (2)
O15—H150.73 (3)C2S—H2SA0.9800
O15—C151.348 (2)C2S—H2SB0.9800
O17—H170.81 (2)C2S—H2SC0.9800
C2—N1—C1116.42 (14)C12—C13—C14121.38 (17)
C2—N1—C6125.97 (16)O14—C14—C13119.93 (16)
C6—N1—C1117.57 (15)O14—C14—C20123.73 (16)
C2—N3—C3118.73 (15)C20—C14—C13116.34 (17)
C2—N3—C4118.88 (16)O15—C15—C16119.69 (16)
C4—N3—C3121.69 (15)O15—C15—C20119.69 (17)
C5—N7—H7124.3 (15)C16—C15—C20120.61 (17)
C8—N7—H7130.4 (15)C15—C16—H16120.3
C8—N7—C5105.17 (15)C15—C16—C17119.39 (16)
C8—N9—C4102.09 (15)C17—C16—H16120.3
N1—C1—H1A109.5O17—C17—C16121.50 (16)
N1—C1—H1B109.5O17—C17—C18116.61 (17)
N1—C1—H1C109.5C18—C17—C16121.89 (17)
H1A—C1—H1B109.5C17—C18—H18121.3
H1A—C1—H1C109.5C19—C18—C17117.34 (18)
H1B—C1—H1C109.5C19—C18—H18121.3
O2—C2—N1121.71 (17)O1—C19—C18116.37 (16)
O2—C2—N3120.41 (17)O1—C19—C20120.63 (16)
N3—C2—N1117.89 (15)C18—C19—C20123.01 (16)
N3—C3—H3A109.5C15—C20—C14122.09 (17)
N3—C3—H3B109.5C19—C20—C14120.14 (16)
N3—C3—H3C109.5C19—C20—C15117.77 (16)
H3A—C3—H3B109.5C22—C21—C12121.84 (17)
H3A—C3—H3C109.5C26—C21—C12119.93 (16)
H3B—C3—H3C109.5C26—C21—C22118.23 (16)
N9—C4—N3125.42 (17)C21—C22—H22119.7
N9—C4—C5112.67 (16)C23—C22—C21120.61 (18)
C5—C4—N3121.89 (17)C23—C22—H22119.7
N7—C5—C6131.85 (17)C22—C23—H23120.0
C4—C5—N7105.09 (16)C24—C23—C22120.07 (16)
C4—C5—C6123.05 (16)C24—C23—H23120.0
O6—C6—N1120.19 (17)O24—C24—C23122.33 (16)
O6—C6—C5128.02 (16)O24—C24—C25117.59 (17)
N1—C6—C5111.80 (16)C23—C24—C25120.08 (16)
N7—C8—Br8121.70 (13)C24—C25—H25120.1
N9—C8—Br8123.33 (14)C26—C25—C24119.70 (18)
N9—C8—N7114.98 (16)C26—C25—H25120.1
C19—O1—C12121.11 (15)C21—C26—H26119.4
C13—O13—H13111.6 (17)C25—C26—C21121.26 (17)
C15—O15—H15106 (2)C25—C26—H26119.4
C17—O17—H17109.7 (17)C2S—O1S—H1S107.1 (18)
C24—O24—H24109.5O1S—C2S—H2SA109.5
O1—C12—C21111.26 (16)O1S—C2S—H2SB109.5
C13—C12—O1120.39 (16)O1S—C2S—H2SC109.5
C13—C12—C21128.35 (17)H2SA—C2S—H2SB109.5
O13—C13—C14117.05 (16)H2SA—C2S—H2SC109.5
C12—C13—O13121.54 (16)H2SB—C2S—H2SC109.5
N3—C4—C5—N7178.19 (16)O13—C13—C14—C20177.79 (16)
N3—C4—C5—C63.0 (3)O14—C14—C20—C150.0 (3)
N7—C5—C6—O63.4 (3)O14—C14—C20—C19179.82 (18)
N7—C5—C6—N1176.32 (18)O15—C15—C16—C17179.82 (17)
N9—C4—C5—N70.5 (2)O15—C15—C20—C140.2 (3)
N9—C4—C5—C6178.34 (17)O15—C15—C20—C19179.93 (17)
C1—N1—C2—O25.6 (3)O17—C17—C18—C19179.94 (16)
C1—N1—C2—N3173.95 (16)O24—C24—C25—C26178.40 (17)
C1—N1—C6—O65.5 (3)C12—O1—C19—C18179.13 (15)
C1—N1—C6—C5174.31 (16)C12—O1—C19—C200.7 (3)
C2—N1—C6—O6172.27 (17)C12—C13—C14—O14179.59 (18)
C2—N1—C6—C57.9 (3)C12—C13—C14—C200.1 (3)
C2—N3—C4—N9178.52 (17)C12—C21—C22—C23179.52 (17)
C2—N3—C4—C52.9 (3)C12—C21—C26—C25179.18 (18)
C3—N3—C2—O27.6 (3)C13—C12—C21—C2213.8 (3)
C3—N3—C2—N1172.89 (16)C13—C12—C21—C26166.01 (19)
C3—N3—C4—N911.2 (3)C13—C14—C20—C15179.40 (17)
C3—N3—C4—C5167.36 (17)C13—C14—C20—C190.7 (3)
C4—N3—C2—O2178.16 (16)C15—C16—C17—O17179.93 (17)
C4—N3—C2—N12.3 (3)C15—C16—C17—C180.3 (3)
C4—N9—C8—Br8179.92 (14)C16—C15—C20—C14179.96 (17)
C4—N9—C8—N70.1 (2)C16—C15—C20—C190.1 (3)
C4—C5—C6—O6178.04 (18)C16—C17—C18—C190.4 (3)
C4—C5—C6—N12.2 (3)C17—C18—C19—O1179.57 (15)
C5—N7—C8—Br8179.60 (13)C17—C18—C19—C200.3 (3)
C5—N7—C8—N90.4 (2)C18—C19—C20—C14179.84 (17)
C6—N1—C2—O2172.19 (17)C18—C19—C20—C150.0 (3)
C6—N1—C2—N38.3 (3)C19—O1—C12—C131.3 (3)
C8—N7—C5—C40.6 (2)C19—O1—C12—C21178.07 (15)
C8—N7—C5—C6178.2 (2)C20—C15—C16—C170.0 (3)
C8—N9—C4—N3178.40 (17)C21—C12—C13—O130.6 (3)
C8—N9—C4—C50.3 (2)C21—C12—C13—C14178.39 (17)
O1—C12—C13—O13178.71 (15)C21—C22—C23—C241.1 (3)
O1—C12—C13—C140.9 (3)C22—C21—C26—C251.0 (3)
O1—C12—C21—C22166.84 (16)C22—C23—C24—O24178.09 (17)
O1—C12—C21—C2613.3 (2)C22—C23—C24—C252.5 (3)
O1—C19—C20—C140.3 (3)C23—C24—C25—C262.2 (3)
O1—C19—C20—C15179.79 (15)C24—C25—C26—C210.4 (3)
O13—C13—C14—O141.7 (3)C26—C21—C22—C230.6 (3)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N7—H7···O6i0.90 (2)1.82 (2)2.6982 (19)165 (2)
O13—H13···O1Sii0.80 (3)2.03 (3)2.788 (2)157 (2)
O15—H15···O140.73 (3)1.95 (3)2.6208 (18)154 (3)
O17—H17···O20.81 (2)1.90 (2)2.7085 (18)173 (2)
O24—H24···O1S0.841.842.6670 (17)169
O1S—H1S···O24iii0.83 (3)2.03 (3)2.791 (2)152 (3)
Symmetry codes: (i) x+2, y+1, z1; (ii) x+1, y+1, z+2; (iii) x+1, y+2, z+2.
3,5,7-Trihydroxy-2-(4-hydroxyphenyl)-4H-1-benzopyran-4-one monohydrate (aH2O-ywj219_ga100k) top
Crystal data top
C15H10O6·H2OF(000) = 1264
Mr = 304.25Dx = 1.604 Mg m3
Monoclinic, C2/cGa Kα radiation, λ = 1.34139 Å
a = 27.7113 (11) ÅCell parameters from 3925 reflections
b = 3.7151 (2) Åθ = 3.1–57.0°
c = 24.7282 (11) ŵ = 0.70 mm1
β = 98.208 (2)°T = 100 K
V = 2519.7 (2) Å3Plate, colourless
Z = 80.03 × 0.03 × 0.03 mm
Data collection top
Bruker APEXII CCD
diffractometer
1890 reflections with I > 2σ(I)
φ and ω scansRint = 0.041
Absorption correction: multi-scan
(SADABS; Bruker, 2016)
θmax = 57.1°, θmin = 2.8°
Tmin = 0.658, Tmax = 0.751h = 3434
11000 measured reflectionsk = 44
2557 independent reflectionsl = 3030
Refinement top
Refinement on F2Hydrogen site location: mixed
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.040 w = 1/[σ2(Fo2) + (0.0543P)2 + 1.2901P]
where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.110(Δ/σ)max = 0.001
S = 1.06Δρmax = 0.19 e Å3
2557 reflectionsΔρmin = 0.17 e Å3
224 parametersExtinction correction: SHELXL2019 (Sheldrick, 2015b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 restraintsExtinction coefficient: 0.0011 (2)
Primary atom site location: structure-invariant direct methods
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
O10.58690 (4)0.6718 (4)0.34033 (5)0.0335 (3)
C20.57465 (5)0.5485 (5)0.38888 (7)0.0293 (4)
O30.59658 (4)0.4356 (4)0.48301 (5)0.0412 (4)
H30.6254 (9)0.381 (7)0.5100 (10)0.071 (7)*
C30.60818 (5)0.5532 (5)0.43461 (7)0.0310 (4)
O40.68735 (4)0.7029 (4)0.47689 (5)0.0448 (4)
C40.65677 (5)0.6936 (5)0.43342 (7)0.0323 (4)
O50.74976 (4)0.9812 (4)0.41816 (5)0.0443 (4)
H50.7370 (10)0.880 (7)0.4468 (11)0.080 (9)*
C50.71407 (5)0.9602 (5)0.37437 (7)0.0313 (4)
C60.72268 (5)1.0775 (5)0.32454 (7)0.0309 (4)
H60.7535541.1756660.3202140.037*
O70.69644 (4)1.1721 (4)0.23138 (5)0.0387 (4)
H70.6693 (9)1.156 (7)0.2059 (10)0.068 (7)*
C70.68598 (6)1.0531 (5)0.27980 (7)0.0320 (4)
C80.64032 (6)0.9152 (5)0.28529 (7)0.0350 (4)
H80.6153750.8996770.2547540.042*
C90.63225 (5)0.8018 (5)0.33623 (7)0.0297 (4)
C100.66777 (5)0.8168 (5)0.38221 (7)0.0289 (4)
C110.52368 (5)0.4282 (5)0.38199 (7)0.0296 (4)
C120.49528 (6)0.4614 (5)0.33073 (7)0.0356 (4)
H120.5096110.5549550.3009930.043*
C130.44697 (6)0.3611 (6)0.32254 (7)0.0398 (5)
H130.4282700.3877680.2874640.048*
O140.37744 (4)0.1259 (4)0.35477 (6)0.0463 (4)
H140.3670 (9)0.038 (7)0.3829 (10)0.064 (8)*
C140.42553 (5)0.2214 (6)0.36530 (7)0.0365 (4)
C150.45285 (6)0.1836 (5)0.41624 (7)0.0352 (4)
H150.4383350.0865640.4456010.042*
C160.50138 (6)0.2870 (5)0.42460 (7)0.0351 (4)
H160.5197960.2614390.4598610.042*
O1W0.33632 (4)0.1296 (5)0.43835 (5)0.0435 (4)
H1WA0.3282 (10)0.033 (9)0.4619 (12)0.087 (10)*
H1WB0.3115 (10)0.254 (8)0.4281 (11)0.071 (8)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
O10.0185 (5)0.0563 (8)0.0270 (6)0.0092 (5)0.0082 (4)0.0009 (6)
C20.0207 (7)0.0406 (10)0.0286 (9)0.0055 (7)0.0107 (6)0.0054 (8)
O30.0245 (6)0.0757 (10)0.0248 (6)0.0184 (6)0.0077 (5)0.0021 (6)
C30.0227 (7)0.0466 (11)0.0256 (9)0.0093 (7)0.0105 (6)0.0070 (8)
O40.0260 (5)0.0836 (10)0.0254 (7)0.0221 (6)0.0060 (5)0.0062 (7)
C40.0231 (7)0.0478 (11)0.0272 (9)0.0096 (7)0.0073 (6)0.0093 (8)
O50.0244 (6)0.0808 (11)0.0283 (7)0.0235 (6)0.0059 (5)0.0060 (7)
C50.0215 (7)0.0442 (11)0.0297 (9)0.0075 (7)0.0090 (6)0.0079 (8)
C60.0207 (7)0.0415 (10)0.0330 (10)0.0068 (7)0.0128 (6)0.0079 (8)
O70.0232 (5)0.0643 (9)0.0304 (7)0.0037 (6)0.0107 (5)0.0048 (6)
C70.0254 (7)0.0428 (11)0.0304 (10)0.0011 (7)0.0128 (7)0.0014 (8)
C80.0206 (7)0.0559 (12)0.0294 (9)0.0041 (7)0.0067 (6)0.0021 (8)
C90.0175 (7)0.0407 (10)0.0328 (9)0.0051 (6)0.0103 (6)0.0060 (8)
C100.0212 (7)0.0392 (10)0.0283 (9)0.0074 (7)0.0105 (6)0.0074 (8)
C110.0195 (7)0.0402 (10)0.0303 (9)0.0061 (7)0.0075 (6)0.0065 (8)
C120.0224 (7)0.0532 (12)0.0326 (10)0.0068 (7)0.0088 (7)0.0001 (9)
C130.0229 (8)0.0639 (13)0.0322 (10)0.0077 (8)0.0028 (7)0.0030 (9)
O140.0196 (6)0.0854 (11)0.0340 (8)0.0170 (6)0.0047 (5)0.0037 (7)
C140.0176 (7)0.0557 (12)0.0375 (10)0.0084 (7)0.0079 (7)0.0039 (9)
C150.0240 (7)0.0553 (12)0.0282 (9)0.0105 (7)0.0108 (7)0.0058 (8)
C160.0229 (7)0.0571 (12)0.0264 (9)0.0089 (7)0.0073 (6)0.0065 (8)
O1W0.0253 (6)0.0756 (11)0.0312 (7)0.0222 (7)0.0090 (5)0.0085 (7)
Geometric parameters (Å, º) top
O1—C21.372 (2)C8—H80.9500
O1—C91.3636 (17)C8—C91.376 (2)
C2—C31.357 (2)C9—C101.395 (2)
C2—C111.468 (2)C11—C121.399 (2)
O3—H30.99 (3)C11—C161.398 (2)
O3—C31.355 (2)C12—H120.9500
C3—C41.448 (2)C12—C131.376 (2)
O4—C41.271 (2)C13—H130.9500
C4—C101.420 (2)C13—C141.385 (3)
O5—H50.92 (3)O14—H140.85 (3)
O5—C51.3604 (19)O14—C141.3676 (18)
C5—C61.360 (2)C14—C151.381 (2)
C5—C101.428 (2)C15—H150.9500
C6—H60.9500C15—C161.386 (2)
C6—C71.395 (2)C16—H160.9500
O7—H70.91 (3)O1W—H1WA0.89 (3)
O7—C71.346 (2)O1W—H1WB0.84 (3)
C7—C81.389 (2)
C9—O1—C2121.95 (12)O1—C9—C10120.28 (15)
O1—C2—C11110.75 (13)C8—C9—C10123.09 (14)
C3—C2—O1119.94 (13)C4—C10—C5123.55 (15)
C3—C2—C11129.31 (15)C9—C10—C4119.86 (14)
C3—O3—H3113.2 (15)C9—C10—C5116.59 (15)
C2—C3—C4121.04 (15)C12—C11—C2119.07 (15)
O3—C3—C2120.73 (14)C16—C11—C2123.25 (15)
O3—C3—C4118.21 (14)C16—C11—C12117.66 (14)
O4—C4—C3120.14 (15)C11—C12—H12119.4
O4—C4—C10122.93 (14)C13—C12—C11121.26 (16)
C10—C4—C3116.92 (14)C13—C12—H12119.4
C5—O5—H5106.0 (17)C12—C13—H13119.9
O5—C5—C10118.59 (15)C12—C13—C14120.22 (16)
C6—C5—O5120.09 (14)C14—C13—H13119.9
C6—C5—C10121.32 (15)C14—O14—H14112.2 (16)
C5—C6—H6120.1O14—C14—C13117.67 (16)
C5—C6—C7119.71 (14)O14—C14—C15122.66 (16)
C7—C6—H6120.1C15—C14—C13119.67 (14)
C7—O7—H7109.4 (16)C14—C15—H15119.9
O7—C7—C6117.31 (14)C14—C15—C16120.14 (16)
O7—C7—C8121.53 (15)C16—C15—H15119.9
C8—C7—C6121.16 (16)C11—C16—H16119.5
C7—C8—H8120.9C15—C16—C11121.04 (16)
C9—C8—C7118.13 (15)C15—C16—H16119.5
C9—C8—H8120.9H1WA—O1W—H1WB107 (2)
O1—C9—C8116.64 (14)
O1—C2—C3—O3179.38 (15)C5—C6—C7—O7179.82 (16)
O1—C2—C3—C41.2 (3)C5—C6—C7—C80.9 (3)
O1—C2—C11—C121.8 (2)C6—C5—C10—C4179.46 (17)
O1—C2—C11—C16179.53 (16)C6—C5—C10—C90.4 (3)
O1—C9—C10—C40.5 (3)C6—C7—C8—C90.2 (3)
O1—C9—C10—C5179.34 (15)O7—C7—C8—C9179.44 (16)
C2—O1—C9—C8179.52 (16)C7—C8—C9—O1179.26 (16)
C2—O1—C9—C100.8 (3)C7—C8—C9—C100.4 (3)
C2—C3—C4—O4178.50 (18)C8—C9—C10—C4179.80 (18)
C2—C3—C4—C101.4 (3)C8—C9—C10—C50.3 (3)
C2—C11—C12—C13178.32 (18)C9—O1—C2—C30.1 (3)
C2—C11—C16—C15178.74 (17)C9—O1—C2—C11179.37 (15)
O3—C3—C4—O40.3 (3)C10—C5—C6—C71.0 (3)
O3—C3—C4—C10179.63 (16)C11—C2—C3—O30.0 (3)
C3—C2—C11—C12177.65 (18)C11—C2—C3—C4178.14 (17)
C3—C2—C11—C161.1 (3)C11—C12—C13—C140.5 (3)
C3—C4—C10—C5179.61 (16)C12—C11—C16—C150.0 (3)
C3—C4—C10—C90.5 (3)C12—C13—C14—O14179.91 (18)
O4—C4—C10—C50.5 (3)C12—C13—C14—C150.1 (3)
O4—C4—C10—C9179.37 (17)C13—C14—C15—C160.4 (3)
O5—C5—C6—C7179.63 (16)O14—C14—C15—C16179.62 (18)
O5—C5—C10—C40.1 (3)C14—C15—C16—C110.4 (3)
O5—C5—C10—C9179.77 (16)C16—C11—C12—C130.5 (3)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
O3—H3···O1Wi0.99 (3)1.80 (3)2.7385 (19)158 (2)
O5—H5···O40.92 (3)1.78 (3)2.6241 (17)152 (2)
O7—H7···O14ii0.91 (3)1.84 (3)2.7413 (17)169 (2)
O14—H14···O1W0.85 (3)1.82 (3)2.6727 (19)172 (2)
O1W—H1WA···O4iii0.89 (3)1.90 (3)2.780 (2)168 (3)
O1W—H1WB···O5iv0.84 (3)1.96 (3)2.7842 (17)169 (3)
Symmetry codes: (i) x+1, y, z+1; (ii) x+1, y+1, z+1/2; (iii) x+1, y+1, z+1; (iv) x1/2, y3/2, z.
Theophylline (Tph) flavonoid cocrystal phases top
PhaseFormulaCocrystal SystemCommentsReference
1aC22H18N4O8Tph–KaempferolR1 = 3.78%This work
1bC22H18N4O9.0.5H2OTph–Quercetin0.5H2Oa
1cC22H18N4O10.0.5H2OTph0–Myricetin0.5H2O, R1 = 4.87%This work
1dC29H26N8O9.3H2OTph–Baicalein 2:13H2Ob
1eC30H30N8O10.xH2OTph–racHesperetin (2:1)Solvate, R1 = 4.85This work
1fC22H20N4O10.CH3CNTph–DihydromyricetinMeCN solvatec
References: (a) Wang et al. (2022) (CSD refcode JATPIH); (b) Zhu et al. (2017) (CSD refcode KAMQIB); (c) Sun et al. (2023) (CSD refcode NEXSIW).
8-Halotheophylline (8-X-Tph) flavonoid cocrystal phases reported in this article top
PhaseFormulaCocrystal systemComments
2aC22H17ClN4O88-Cl-Tph–KaempferolR1 3.61%
2cC22H17ClN4O108-Cl-Tph–MyricetinR1 3.82%
3aC22H17BrN4O88-Br-Tph–KaempferolR1 3.18%
3a'C22H17BrN4O10.CH4O8-Br-Tph–Kaempferol MeOHR1 2.86%
3cC22H17BrN4O108-Br-Tph–MyricetinR1 3.86%
Specific volumes for theophylline–flavonoid coformer/cocrystal phases top
(a) specific volumes for theophylline–flavonoid coformer phases
PhaseFormulaUnit cell volume (Å3), ZMolecular volume (anhydrous)ii3)Reference/CSD refcode
1, theophylline (Tph)C7H8N4O2390.9, 2195.5 (195.5)Ye et al. (2025)
2, 8-Cl-theophylline (8-Cl-Tph)C7H7ClN4O2418.0, 2209.0 (209.0)Ye et al. (2025)
3, 8-Br-theophylline (8-Br-Tph)C7H7BrN4O2860.9, 4215.2 (215.2)Ye et al. (2025)
a, kaempferol, H2O (Kmp)C15H10O6.H2O2519.7, 8315.0 (295.0)This work
b, quercetin, H2O (Que)C15H10O7.H2O1273.8, 4318.4 (298.4)AKIJEC
c, myricetin, H2O (Myr)iC15H10O8.H2O1305.5, 4323.2 (303.2)NIKLAX
d, baicalein (Bai)C15H10O51170.7, 4292.7 (292.7)RAMGOB
e, hesperetin (Hes)C16H14O61359.5, 4339.9 (339.9)YEHROS
f, dihydromyricetin, 2H2O (Dhm)C15H10O8.2H2O2928.6, 8366.1 (326.1)SIMVOA02
(b) specific volumes for theophylline–flavonoid cocrystal phases
PhaseUnit cell volume (Å3), ZFormula volume (anhydrous)b3)Coformer volume (anhydr.) (ΔV Å3)Reference/CSD refcode
1a, Tph–Kmp (1/1)1978.8, 4494.7 (494.7)490.5, -4.2This work
1b, Tph–Que (1/1), 0.5H2O4083.2, 8510.4 (500.4)493.9, -5.1JATPIH
1c, Tph–Myr (1/1), 0.5H2O4188.5, 8523.6 (513.6)498.7a, -14.9This work
1d, Tph–Bai (2/1), 3H2O1496.2, 2748.1 (688.1)683.6, -4.7KAMQIB
1e, Tph–Hes (2/1) MeOH, 2H2O1630.2, 2815.1 (735.1)730.8, -4.3This work
1f, Tph–Dhm (1/1), MeCN2402.0, 4600.5 (540.5)521.6, -18.9NEXSIW
2a, 8-Cl-Tph–Kmp2081.8, 4520.4 (520.4)504.0, -16.4This work
2c, 8-Cl-Tph–Myr1066.2, 2533.1 (533.1)512.2, -20.9This work
3a, 8-Br-Tph–Kmp2101.0, 4525.3 (525.3)510.2, -15.1This work
3a', 8-Br-Tph–Kmp, MeOH1142.3, 2571.2 (531.2)510.2, -21.2This work
3c, 8-Br-Tph–Myr1079.3, 2539.7 (539.7)518.4, -21.3This work
Notes: (i) all unit-cell data at 100 K, except for Myr.H2O (140 K), the coformer volume is reduced by 1% to approximate a 100 K structure; (ii) molecular volumes subtracted: H2O = 20 Å3, MeOH 40 Å3 and MeCN 60 Å3. References for earlier CSD structures: AKIJEC (Domagała et al., 2011), NIKLAX (Ren et al., 2019), RAMGOB (Rossi et al., 2001), YEHROS (Maeda et al., 1994), SIMVOA02 (Hu et al., 2020), JATPIH (Wang et al., 2022), KAMQIB (Zhu et al., 2017) and NEXSIW (Sun et al., 2023). Except for SIMVOA02, these were all redetermined by us at 100 K.
Hydrogen bonds (HBs) for selected crystals and cocrystals top
PhaseNo. of donors, HBsStrongest HBs (Å)CommentReference
1, Tph1, 1NH—N 2.820 (4)chainYe et al. (2025)
2, 8-Cl-Tph1, 1NH—O 2.723 (2)dimerYe et al. (2025)
3, 8-Br-Tph1, 1NH—O 2.760 (2)dimerYe et al. (2025)
a.H2O, Kmp H2O6, 6OH—O 2.742 (2)4 HBs with H2OThis work
1a, Tph–Kmp5, 5OH—O 2.680 (2)3 HBs Kmp-to-TphThis work
OH—N9 2.794 (2)1 HB Tph-to-Kmp
2a. 8-Cl-Tph–Kmp5, 5NH—O6 2.667 (2)2 HBs Kmp-to-8-Cl-TphThis work
OH—O2 2.774 (2)OH—N9 2.866 (weak)
3a, 8-Br-Tph–Kmp5, 5NH—O6 2.671 (2)2 HBs Kmp-to-8-Br-TphThis work
OH—O2 2.769 (2)OH—N9 2.881 (weak)
3a', 8-Br-Tph–Kmp MeOH6, 6NH—O6 2.698 (2)1 HB Kmp-to-8-Br-TphThis work
OH—O2 2.708 (2)No use of N9 acceptor
1c, Tph–Myr 0.5H2O8, 7OH—N9 2.744 (3)H2O single donorThis work
2c, 8-Cl-Tph–Myr7, 7OH—O2 2.689 (2)2 HBs Kmp-to-8X-TphThis work
No use of N9 acceptor
3c, 8-Br-Tph–Myr7, 7OH—O2 2.652 (2)2 HBs Kmp-to-8X-TphThis work
No use of N9 acceptor
Microwave-assisted formation for selected cocrystals* top
PhaseAlkaloid Mr (mg)Cocrystal Mr% yield
Flavonoid Mr (mg)Yield (mg)
1a, Tph–Kmp (1/1)180.2, 180466.489.2
286.2, 300413
1b, Tph–Que (1/1), 0.5H2O180.2, 180491.491.8
302.2, 310451
1c, Tph–Myr (1/1), 0.5H2O180.2, 180507.486.3
318.2, 325438
1d, Tph–Bai (2/1), 3H2O180.2, 270 (1.5 mmol)648.685.8
270.2, 210 (0.75 mmol)557
2a, 8-Cl-Tph–Kmp (1/1)214.6, 215500.886.5
286.2, 300433
2c, 8-Cl-Tph–Myr (1/1)214.6, 215532.892.0
318.2, 325490
3a, 8-Br-Tph–Kmp (1/1)259.1, 130545.380.7
286.2, 150220
3c, 8-Br-Tph–Myr (1/1)259.1, 130577.388.5
318.2, 160558
Note: (*) microwave-assisted cocrystal formation in Biotage Initiator+ using sealed 2–5 ml reaction vials; 1 mmol scale in 2 ml 1-butanol, except for 1d, a 2:1 cocrystal on a 0.75 mmol scale in 2 ml 1-butanol?, and 3a and 3c on a 0.5 mmol scale in 1 ml 1-butanol.
 

Funding information

Funding for this research was provided by: the Research Grants Council of Hong Kong through equipment grant C6022-20E. We also gratefully acknowledge the financial support of the Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guang­zhou) (grant No. SMSEGL-20SC01-D) and the Hong Kong Branch of Chinese National Engineering Research Center for Tissue Restoration and Reconstruction, funded by the Innovation and Technology Commission (ITC-CNERC14SC01).

References

Return to citationAhuja, D., Ramisetty, K. A., Sumanth, P. K., Crowley, C. M., Lusi, M. & Rasmuson, C. (2020). CrystEngComm 22, 1381–1394.  CSD CrossRef CAS Google Scholar
Return to citationBourhis, L. J., Dolomanov, O. V., Gildea, R. J., Howard, J. A. K. & Puschmann, H. (2015). Acta Cryst. A71, 59–75.  Web of Science CrossRef IUCr Journals Google Scholar
Return to citationBruker (2016). APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA.  Google Scholar
Return to citationChadha, K., Karan, M., Bhalla, Y., Chadha, R., Kullar, S., Mandal, S. & Vasisht, K. (2017). Cryst. Growth Des. 17, 2386–2405.  CSD CrossRef CAS Google Scholar
Return to citationDolomanov, O. V., Bourhis, L. J., Gildea, R. J., Howard, J. A. K. & Puschmann, H. (2009). J. Appl. Cryst. 42, 339–341.  Web of Science CrossRef CAS IUCr Journals Google Scholar
Return to citationDomagała, S., Munshi, P., Ahmed, M., Guillot, B. & Jelsch, C. (2011). Acta Cryst. B67, 63–78.  Web of Science CSD CrossRef IUCr Journals Google Scholar
Return to citationDyulgerov, V. M., Dimowa, L. T., Kossev, K., Nikolova, R. P. & Shivachev, B. L. (2015). Bulg. Chem. Commun. 47, 311–316.  Google Scholar
Return to citationEtter, M. C., MacDonald, J. C. & Bernstein, J. (1990). Acta Cryst. B46, 256–262.  CrossRef ICSD CAS Web of Science IUCr Journals Google Scholar
Return to citationFucke, K., McIntyre, G. J., Wilkinson, C., Henry, M., Howard, J. A. K. & Steed, J. W. (2012). Cryst. Growth Des. 12, 1395–1401.  Web of Science CSD CrossRef CAS Google Scholar
Return to citationGood, D. J. & Rodríguez-Hornedo, N. (2009). Cryst. Growth Des. 9, 2252–2264.  Web of Science CrossRef CAS Google Scholar
Return to citationGroom, C. R., Bruno, I. J., Lightfoot, M. P. & Ward, S. C. (2016). Acta Cryst. B72, 171–179.  Web of Science CrossRef IUCr Journals Google Scholar
Return to citationHu, H., Luo, F., Wang, M., Fu, Z. & Shu, X. (2020). ACS Omega 5, 13955–13962.  CSD CrossRef CAS PubMed Google Scholar
Return to citationKarimi-Jafari, M., Padrela, L., Walker, G. M. & Croker, D. M. (2018). Cryst. Growth Des. 18, 6370–6387.  CAS Google Scholar
Return to citationLi, K. (2024). PhD thesis, Hong Kong University of Science and Technology.  Google Scholar
Return to citationLi, K., Roy, M., Nisar, M., Wong, L. W.-Y., Sung, H. H.-Y., Haynes, R. K. & Williams, I. D. (2022). Crystals 12, 1368.  CSD CrossRef Google Scholar
Return to citationMaeda, S., Masuda, H. & Tokoroyama, T. (1994). Chem. Pharm. Bull. 42, 2500–2505.  CrossRef CAS Google Scholar
Return to citationNisar, M., Sung, H. H.-Y., Puschmann, H., Lakerveld, R., Haynes, R. K. & Williams, I. D. (2018). CrystEngComm 20, 1205–1219.  CSD CrossRef CAS Google Scholar
Return to citationPryzynska, K. (2022). Nutrients 14, 2387.  PubMed Google Scholar
Return to citationPutra, O. D., Yoshida, T., Umeda, D., Higashi, K., Uekusa, H. & Yonemochi, E. (2016). Cryst. Growth Des. 16, 5223–5229.  Web of Science CrossRef CAS Google Scholar
Return to citationRen, S., Liu, M., Hong, C., Li, G., Sun, J., Wang, J., Zhang, L. & Xie, Y. (2019). Acta Pharm. Sin. B 9, 59–73.  CSD CrossRef PubMed Google Scholar
Return to citationRigaku OD (2022). CrysAlis PRO. Rigaku Oxford Diffraction Ltd, Yarnton, Oxfordshire, England.  Google Scholar
Return to citationRigaku OD (2023). CrysAlis PRO. Rigaku Oxford Diffraction Ltd, Yarnton, Oxfordshire, England.  Google Scholar
Return to citationRossi, M., Meyer, R., Constantinou, P., Caruso, F., Castelbuono, D., O'Brien, M. & Narasimhan, V. (2001). J. Nat. Prod. 64, 26–31.  Web of Science CSD CrossRef PubMed CAS Google Scholar
Return to citationRoy, M., Li, K., Nisar, M., Wong, L. W.-Y., Sung, H. H.-Y., Haynes, R. K. & Williams, I. D. (2021). Acta Cryst. C77, 262–270.  CSD CrossRef IUCr Journals Google Scholar
Return to citationSakhiya, D. C. & Borkhataria, C. H. (2024). Heliyon 10, e29057.  CrossRef PubMed Google Scholar
Return to citationSanphui, A. & Nangia, A. (2014). J. Chem. Sci. 126, 1249–1264.  CSD CrossRef CAS Google Scholar
Return to citationSharma, R. G., Vankar, S. D. & Sharma, M. G. (2025). Mol. Divers. 30, 3343–3365.  CrossRef PubMed Google Scholar
Return to citationSheldrick, G. M. (2015a). Acta Cryst. A71, 3–8.  Web of Science CrossRef IUCr Journals Google Scholar
Return to citationSheldrick, G. M. (2015b). Acta Cryst. C71, 3–8.  Web of Science CrossRef IUCr Journals Google Scholar
Return to citationSpek, A. L. (2015). Acta Cryst. C71, 9–18.  Web of Science CrossRef IUCr Journals Google Scholar
Return to citationSun, J., Wang, Y., Tang, W. & Gong, J. (2023). IUCrJ 10, 164–176.  CSD CrossRef CAS PubMed IUCr Journals Google Scholar
Return to citationTaylor, C. R. & Day, G. M. (2018). Cryst. Growth Des. 18, 892–904.  Web of Science CrossRef CAS PubMed Google Scholar
Return to citationTrask, A. V. & Jones, W. (2005). Top. Curr. Chem., 254, 41-70.  CrossRef CAS Google Scholar
Return to citationTrask, A. V., Motherwell, W. D. S. & Jones, W. (2005). Cryst. Growth Des. 5, 1013–1021.  Web of Science CSD CrossRef CAS Google Scholar
Return to citationTrask, A. V., Motherwell, W. D. S. & Jones, W. (2006). Int. J. Pharm. 320, 114–123.  Web of Science CSD CrossRef PubMed CAS Google Scholar
Return to citationWang, L., Li, S., Xu, X., Xu, X., Wang, Q., Li, D. & Zhang, H. (2022). J. Drug. Deliv. Sci. Technol. 70, 103228.  CSD CrossRef Google Scholar
Return to citationXia, Y., Wei, Y., Chen, H., Qian, S., Zhang, J. & Gao, Y. (2021). IUCrJ 8, 195–207.  CSD CrossRef CAS PubMed IUCr Journals Google Scholar
Return to citationYe, W. (2024). PhD thesis, Hong Kong University of Science and Technology.  Google Scholar
Return to citationYe, W., Zhang, C., Sung, H. H.-Y., Wong, L. W.-Y., Sheong, F. E. K. & Williams, I. D. (2025). Crystals 15, 340.  CSD CrossRef Google Scholar
Return to citationZhu, B., Zhang, Q., Wang, J.-R. & Mei, X. (2017). Cryst. Growth Des. 17, 1893–1901.  Web of Science CrossRef CAS Google Scholar

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