organic compounds
A tetraazamacrocycle with benzyl substituents
aSchool of Natural Sciences (Chemistry), Bedson Building, University of Newcastle upon Tyne, Newcastle upon Tyne NE1 7RU, England, and bDepartment of Chemistry, Andong National University, Andong 760-749, South Korea
*Correspondence e-mail: w.clegg@ncl.ac.uk
The molecule of the title compound, 2,13-dibenzyl-5,16-dimethyl-2,6,13,17-tetraazatricyclo[16.4.01,18.07,12]docosane, C34H52N4, is centrosymmetric. The 14-membered macrocycle adopts the stable trans-III (RRSS) configuration, with one benzyl group above and the other below the macrocycle mean plane. The is stabilized by N—H⋯N hydrogen bonds. There is no intermolecular π–π interaction between benzyl planes, which are almost 6Å apart.
Comment
The 14-membered cyclam (1,4,8,11-tetraazacyclotetradecane) ligand and its substituted derivatives are involved in diverse application fields, such as catalysis, enzyme mimics, chemical sensors, selective metal ion recovery, pharmacology and therapy (Meyer et al., 1998, and references therein). Metal–cyclam adducts have a moderately flexible structure, and can adopt both planar (trans) and folded (cis) configurations (Poon et al., 1980). There are five configurational trans isomers for the N4-donor set of cyclam which differ in the of the sec-NH centres. The trans-V configuration can fold to form a cis-V isomer. We previously described the spectroscopic and ligand-field properties based on the emission, far-IR and electronic spectroscopy of chromium(III) complexes with 14-membered cyclam derivatives and two auxiliary ligands (Choi, 2000a,b; Choi, Oh, Suzuki & Kaizaki, 2004; Choi, Oh, Linder & Schönherr, 2004; Choi, Oh, Lim & Park, 2004). The modification of C- and/or N-configurational isomers of polyaza macrocyclic ligands to control the chemical and physical properties of metal complexes has been of considerable interest (Dong & Lindoy, 2001). The 14-membered cyclam containing two 1,2-diaminocyclohexanediamine subunits occurs in both cis- and trans-configurations (Kang & Jeong, 2003).
Octahedral transition metal complexes with cyclam derivatives display UV–visible electronic absorption bands. The d–d transitions are symmetry forbidden, so extinction coefficients are relatively small. Thus, it is necessary to prepare new systems with ligand-based chromophores with higher extinction coefficients (Bernhardt & Riley, 2002). Benzyl groups are introduced as possible internal sensitizers of the macrocyclic ligand and its metal complexes. Recently, the synthesis and chemical properties of tetraaza marcrocycles containing two pendant arms and their nickel(II) and copper(II) complexes have been reported (Kang & Kim, 2003). However, the structures of (I) and its complexes have not previously been determined by X-ray crystallography. We report here the of the title macrocycle, (I), with the aim of confirming the stereochemistry of the attached groups and gaining further insight into its coordination properties for various transition metal ions.
Selected bond lengths and angles are listed in Table 1. A perspective drawing of the centrosymmetric molecular structure is depicted in Fig. 1. Bond distances and angles are in normal ranges. The of (I) shows a configuration with one benzyl group above and the other below the macrocycle mean plane, this being the sterically least-hindered configuration. The cyclam ligand has the trans-III (RRSS) form, consistent with a crystallographic centre of symmetry. The four N atoms are exactly coplanar as a result of the centrosymmetry of the molecule. The (CH2)4 part of the cyclohexane subunit is anti with respect to the macrocycle plane. The intramolecular hydrogen bond between secondary N2—H2N and tertiary N1 lends some rigidity to the cyclam ring. The closest intermolecular distance between benzyl rings is >5.8Å, which is not within the range associated with π–π interactions (Munakata et al., 1994). We can anticipate that a related new macrocycle, containing two naphthylmethyl pendant arms, will adopt the most stable trans-III configuration, in which the two H atoms on the secondary and the two naphthylmethyl groups are likewise oriented on opposite sides of the macrocycle plane. The of a copper(II) complex with the title ligand will be reported later (Choi et al., 2006).
Experimental
The title macrocycle was prepared according to a published procedure (Kang et al., 1991). To a solution of 5,16-dimethyl-2,6,13,17-tetraazatricyclo[14.4.01,18.07,12]docosane (8.814 g, 2.42 mmol) in methanol (10 ml) were added benzyl bromide (0.838 g, 4.90 mmol) and a solution containing Na2CO3 (0.520 g, 4.90 mmol) in water (4 ml). The solution was refluxed for 24 h and cooled to room temperature, and the resultant white solid was filtered off and washed with cold water. The crude compound was recrystallized from tetrahydrofuran to give colourless crystals suitable for X-ray analysis (yield 0.828 g, 66.3%). The IR spectrum (KBr) showed peaks at 3264 (N—H), 3063 and 3027 (aromatic C—H), 1603 and 1484 cm−1 (aromatic C=C). Analysis found: C 79.71, H 10.48, N 10.99%; C34H52N4 requires: C 79.02, H 10.14, N 10.84%. The new macrocycle containing two naphthylmethyl pendant arms was also prepared by a similar method, except that 1-chloromethylnaphthalene was used instead of benzyl bromide.
Crystal data
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Data collection
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Refinement
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The H atom bonded to N2 was located in a difference map and refined freely. Other H atoms were positioned geometrically, with C—H distances of 0.95–1.00Å, and refined as riding, with Uiso(H) = 1.2Ueq(C).
Data collection: SMART (Bruker, 2001); cell SAINT (Bruker, 2001); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2001); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and local programs.
Supporting information
https://doi.org/10.1107/S1600536806001425/bt6802sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536806001425/bt6802Isup2.hkl
Data collection: SMART (Bruker, 2001); cell
SAINT (Bruker, 2001); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2001); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and local programs.C34H52N4 | Z = 1 |
Mr = 516.80 | F(000) = 284 |
Triclinic, P1 | Dx = 1.155 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 8.8976 (12) Å | Cell parameters from 5357 reflections |
b = 9.2438 (12) Å | θ = 2.3–28.7° |
c = 9.2535 (12) Å | µ = 0.07 mm−1 |
α = 82.467 (2)° | T = 150 K |
β = 87.605 (2)° | Block, colourless |
γ = 79.982 (2)° | 0.56 × 0.55 × 0.50 mm |
V = 742.87 (17) Å3 |
Bruker SMART 1K CCD diffractometer | 2363 reflections with I > 2σ(I) |
Radiation source: sealed tube | Rint = 0.024 |
Graphite monochromator | θmax = 25.0°, θmin = 2.2° |
ω scans | h = −10→10 |
5375 measured reflections | k = −10→10 |
2590 independent reflections | l = −10→10 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.064 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.131 | w = 1/[σ2(Fo2) + (0.0312P)2 + 0.5246P] where P = (Fo2 + 2Fc2)/3 |
S = 1.27 | (Δ/σ)max < 0.001 |
2590 reflections | Δρmax = 0.27 e Å−3 |
178 parameters | Δρmin = −0.19 e Å−3 |
0 restraints | Extinction correction: SHELXTL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.015 (4) |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
N1 | 0.63153 (18) | 0.26660 (17) | 0.59479 (18) | 0.0170 (4) | |
N2 | 0.49804 (19) | 0.42433 (19) | 0.33715 (18) | 0.0191 (4) | |
H2N | 0.508 (2) | 0.503 (3) | 0.372 (2) | 0.018 (6)* | |
C1 | 0.7304 (2) | 0.2942 (2) | 0.4658 (2) | 0.0182 (5) | |
H1 | 0.7706 | 0.3866 | 0.4766 | 0.022* | |
C2 | 0.6433 (2) | 0.3248 (2) | 0.3222 (2) | 0.0194 (5) | |
H2 | 0.6195 | 0.2283 | 0.2999 | 0.023* | |
C3 | 0.4077 (2) | 0.4704 (2) | 0.2050 (2) | 0.0195 (5) | |
H3 | 0.4706 | 0.5203 | 0.1283 | 0.023* | |
C4 | 0.2659 (2) | 0.5800 (2) | 0.2386 (2) | 0.0203 (5) | |
H4A | 0.2132 | 0.5362 | 0.3255 | 0.024* | |
H4B | 0.1958 | 0.5943 | 0.1557 | 0.024* | |
C5 | 0.2963 (2) | 0.7312 (2) | 0.2666 (2) | 0.0200 (5) | |
H5A | 0.3623 | 0.7682 | 0.1864 | 0.024* | |
H5B | 0.1980 | 0.8007 | 0.2632 | 0.024* | |
C6 | 0.5653 (2) | 0.1314 (2) | 0.5978 (2) | 0.0217 (5) | |
H6A | 0.6381 | 0.0455 | 0.6427 | 0.026* | |
H6B | 0.5476 | 0.1148 | 0.4968 | 0.026* | |
C7 | 0.4164 (2) | 0.1427 (2) | 0.6833 (2) | 0.0205 (5) | |
C8 | 0.2895 (2) | 0.2395 (2) | 0.6271 (2) | 0.0254 (5) | |
H8 | 0.2971 | 0.2973 | 0.5352 | 0.030* | |
C9 | 0.1521 (3) | 0.2528 (3) | 0.7035 (3) | 0.0309 (6) | |
H9 | 0.0658 | 0.3192 | 0.6636 | 0.037* | |
C10 | 0.1393 (3) | 0.1699 (3) | 0.8378 (3) | 0.0326 (6) | |
H10 | 0.0445 | 0.1790 | 0.8899 | 0.039* | |
C11 | 0.2645 (3) | 0.0745 (3) | 0.8952 (3) | 0.0321 (6) | |
H11 | 0.2565 | 0.0180 | 0.9879 | 0.039* | |
C12 | 0.4027 (3) | 0.0601 (2) | 0.8186 (2) | 0.0257 (5) | |
H12 | 0.4886 | −0.0067 | 0.8588 | 0.031* | |
C13 | 0.8702 (2) | 0.1735 (2) | 0.4506 (2) | 0.0239 (5) | |
H13A | 0.9238 | 0.1483 | 0.5445 | 0.029* | |
H13B | 0.8366 | 0.0831 | 0.4263 | 0.029* | |
C14 | 0.9794 (2) | 0.2261 (3) | 0.3314 (3) | 0.0297 (5) | |
H14A | 1.0186 | 0.3124 | 0.3591 | 0.036* | |
H14B | 1.0674 | 0.1460 | 0.3215 | 0.036* | |
C15 | 0.8990 (2) | 0.2694 (3) | 0.1867 (2) | 0.0297 (5) | |
H15A | 0.8761 | 0.1793 | 0.1509 | 0.036* | |
H15B | 0.9678 | 0.3145 | 0.1142 | 0.036* | |
C16 | 0.7505 (2) | 0.3790 (2) | 0.2000 (2) | 0.0244 (5) | |
H16A | 0.6968 | 0.3958 | 0.1062 | 0.029* | |
H16B | 0.7753 | 0.4749 | 0.2194 | 0.029* | |
C17 | 0.3638 (3) | 0.3360 (2) | 0.1489 (2) | 0.0273 (5) | |
H17A | 0.4553 | 0.2755 | 0.1120 | 0.041* | |
H17B | 0.2907 | 0.3690 | 0.0701 | 0.041* | |
H17C | 0.3172 | 0.2770 | 0.2286 | 0.041* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0163 (9) | 0.0163 (8) | 0.0188 (9) | −0.0033 (7) | 0.0009 (7) | −0.0028 (7) |
N2 | 0.0194 (9) | 0.0177 (9) | 0.0203 (9) | −0.0011 (7) | −0.0003 (7) | −0.0055 (7) |
C1 | 0.0161 (10) | 0.0162 (10) | 0.0225 (11) | −0.0034 (8) | 0.0019 (8) | −0.0034 (8) |
C2 | 0.0186 (11) | 0.0188 (10) | 0.0214 (11) | −0.0025 (8) | 0.0038 (8) | −0.0071 (8) |
C3 | 0.0198 (11) | 0.0229 (11) | 0.0163 (10) | −0.0054 (8) | 0.0004 (8) | −0.0023 (8) |
C4 | 0.0168 (10) | 0.0272 (11) | 0.0173 (10) | −0.0047 (9) | −0.0018 (8) | −0.0028 (8) |
C5 | 0.0165 (10) | 0.0191 (11) | 0.0221 (11) | 0.0018 (8) | −0.0014 (8) | −0.0002 (8) |
C6 | 0.0208 (11) | 0.0166 (10) | 0.0274 (12) | −0.0028 (8) | 0.0019 (9) | −0.0025 (8) |
C7 | 0.0212 (11) | 0.0188 (10) | 0.0242 (11) | −0.0077 (8) | 0.0007 (9) | −0.0072 (8) |
C8 | 0.0244 (12) | 0.0253 (12) | 0.0269 (12) | −0.0065 (9) | −0.0015 (9) | −0.0017 (9) |
C9 | 0.0201 (12) | 0.0310 (13) | 0.0428 (14) | −0.0035 (9) | −0.0009 (10) | −0.0105 (11) |
C10 | 0.0216 (12) | 0.0448 (15) | 0.0370 (14) | −0.0142 (11) | 0.0091 (10) | −0.0178 (11) |
C11 | 0.0354 (14) | 0.0399 (14) | 0.0254 (12) | −0.0197 (11) | 0.0050 (10) | −0.0048 (10) |
C12 | 0.0263 (12) | 0.0224 (11) | 0.0291 (12) | −0.0074 (9) | −0.0030 (9) | −0.0005 (9) |
C13 | 0.0185 (11) | 0.0240 (11) | 0.0283 (12) | −0.0014 (9) | 0.0003 (9) | −0.0035 (9) |
C14 | 0.0180 (11) | 0.0340 (13) | 0.0361 (13) | −0.0021 (9) | 0.0062 (10) | −0.0063 (10) |
C15 | 0.0231 (12) | 0.0383 (13) | 0.0283 (12) | −0.0050 (10) | 0.0111 (9) | −0.0100 (10) |
C16 | 0.0240 (11) | 0.0292 (12) | 0.0206 (11) | −0.0058 (9) | 0.0023 (9) | −0.0046 (9) |
C17 | 0.0286 (12) | 0.0261 (12) | 0.0280 (12) | −0.0032 (9) | −0.0066 (9) | −0.0064 (9) |
N1—C5i | 1.463 (3) | C7—C12 | 1.391 (3) |
N1—C6 | 1.468 (3) | C8—C9 | 1.381 (3) |
N1—C1 | 1.474 (3) | C8—H8 | 0.950 |
N2—C2 | 1.463 (3) | C9—C10 | 1.383 (3) |
N2—C3 | 1.466 (3) | C9—H9 | 0.950 |
N2—H2N | 0.86 (2) | C10—C11 | 1.374 (3) |
C1—C13 | 1.535 (3) | C10—H10 | 0.950 |
C1—C2 | 1.535 (3) | C11—C12 | 1.389 (3) |
C1—H1 | 1.000 | C11—H11 | 0.950 |
C2—C16 | 1.538 (3) | C12—H12 | 0.950 |
C2—H2 | 1.000 | C13—C14 | 1.526 (3) |
C3—C17 | 1.523 (3) | C13—H13A | 0.990 |
C3—C4 | 1.523 (3) | C13—H13B | 0.990 |
C3—H3 | 1.000 | C14—C15 | 1.519 (3) |
C4—C5 | 1.524 (3) | C14—H14A | 0.990 |
C4—H4A | 0.990 | C14—H14B | 0.990 |
C4—H4B | 0.990 | C15—C16 | 1.530 (3) |
C5—N1i | 1.463 (3) | C15—H15A | 0.990 |
C5—H5A | 0.990 | C15—H15B | 0.990 |
C5—H5B | 0.990 | C16—H16A | 0.990 |
C6—C7 | 1.509 (3) | C16—H16B | 0.990 |
C6—H6A | 0.990 | C17—H17A | 0.980 |
C6—H6B | 0.990 | C17—H17B | 0.980 |
C7—C8 | 1.386 (3) | C17—H17C | 0.980 |
C5i—N1—C6 | 110.47 (15) | C9—C8—C7 | 120.7 (2) |
C5i—N1—C1 | 113.92 (15) | C9—C8—H8 | 119.7 |
C6—N1—C1 | 113.44 (15) | C7—C8—H8 | 119.7 |
C2—N2—C3 | 116.53 (16) | C8—C9—C10 | 120.4 (2) |
C2—N2—H2N | 112.9 (14) | C8—C9—H9 | 119.8 |
C3—N2—H2N | 107.0 (14) | C10—C9—H9 | 119.8 |
N1—C1—C13 | 115.25 (16) | C11—C10—C9 | 119.5 (2) |
N1—C1—C2 | 113.08 (16) | C11—C10—H10 | 120.2 |
C13—C1—C2 | 108.70 (16) | C9—C10—H10 | 120.2 |
N1—C1—H1 | 106.4 | C10—C11—C12 | 120.3 (2) |
C13—C1—H1 | 106.4 | C10—C11—H11 | 119.8 |
C2—C1—H1 | 106.4 | C12—C11—H11 | 119.8 |
N2—C2—C1 | 110.90 (16) | C11—C12—C7 | 120.5 (2) |
N2—C2—C16 | 114.93 (17) | C11—C12—H12 | 119.8 |
C1—C2—C16 | 108.23 (16) | C7—C12—H12 | 119.8 |
N2—C2—H2 | 107.5 | C14—C13—C1 | 110.68 (17) |
C1—C2—H2 | 107.5 | C14—C13—H13A | 109.5 |
C16—C2—H2 | 107.5 | C1—C13—H13A | 109.5 |
N2—C3—C17 | 110.22 (17) | C14—C13—H13B | 109.5 |
N2—C3—C4 | 109.32 (16) | C1—C13—H13B | 109.5 |
C17—C3—C4 | 110.73 (17) | H13A—C13—H13B | 108.1 |
N2—C3—H3 | 108.8 | C15—C14—C13 | 110.71 (18) |
C17—C3—H3 | 108.8 | C15—C14—H14A | 109.5 |
C4—C3—H3 | 108.8 | C13—C14—H14A | 109.5 |
C3—C4—C5 | 114.91 (16) | C15—C14—H14B | 109.5 |
C3—C4—H4A | 108.5 | C13—C14—H14B | 109.5 |
C5—C4—H4A | 108.5 | H14A—C14—H14B | 108.1 |
C3—C4—H4B | 108.5 | C14—C15—C16 | 111.85 (18) |
C5—C4—H4B | 108.5 | C14—C15—H15A | 109.2 |
H4A—C4—H4B | 107.5 | C16—C15—H15A | 109.2 |
N1i—C5—C4 | 115.19 (16) | C14—C15—H15B | 109.2 |
N1i—C5—H5A | 108.5 | C16—C15—H15B | 109.2 |
C4—C5—H5A | 108.5 | H15A—C15—H15B | 107.9 |
N1i—C5—H5B | 108.5 | C15—C16—C2 | 112.86 (18) |
C4—C5—H5B | 108.5 | C15—C16—H16A | 109.0 |
H5A—C5—H5B | 107.5 | C2—C16—H16A | 109.0 |
N1—C6—C7 | 111.16 (16) | C15—C16—H16B | 109.0 |
N1—C6—H6A | 109.4 | C2—C16—H16B | 109.0 |
C7—C6—H6A | 109.4 | H16A—C16—H16B | 107.8 |
N1—C6—H6B | 109.4 | C3—C17—H17A | 109.5 |
C7—C6—H6B | 109.4 | C3—C17—H17B | 109.5 |
H6A—C6—H6B | 108.0 | H17A—C17—H17B | 109.5 |
C8—C7—C12 | 118.6 (2) | C3—C17—H17C | 109.5 |
C8—C7—C6 | 119.49 (19) | H17A—C17—H17C | 109.5 |
C12—C7—C6 | 121.91 (19) | H17B—C17—H17C | 109.5 |
C5i—N1—C1—C13 | 66.6 (2) | N1—C6—C7—C8 | 69.6 (2) |
C6—N1—C1—C13 | −61.0 (2) | N1—C6—C7—C12 | −109.4 (2) |
C5i—N1—C1—C2 | −167.55 (16) | C12—C7—C8—C9 | −0.5 (3) |
C6—N1—C1—C2 | 64.9 (2) | C6—C7—C8—C9 | −179.55 (19) |
C3—N2—C2—C1 | 176.19 (16) | C7—C8—C9—C10 | 0.3 (3) |
C3—N2—C2—C16 | 53.0 (2) | C8—C9—C10—C11 | 0.3 (3) |
N1—C1—C2—N2 | 43.0 (2) | C9—C10—C11—C12 | −0.6 (3) |
C13—C1—C2—N2 | 172.36 (16) | C10—C11—C12—C7 | 0.4 (3) |
N1—C1—C2—C16 | 169.96 (16) | C8—C7—C12—C11 | 0.1 (3) |
C13—C1—C2—C16 | −60.7 (2) | C6—C7—C12—C11 | 179.18 (19) |
C2—N2—C3—C17 | 61.3 (2) | N1—C1—C13—C14 | −169.24 (17) |
C2—N2—C3—C4 | −176.72 (16) | C2—C1—C13—C14 | 62.7 (2) |
N2—C3—C4—C5 | 69.9 (2) | C1—C13—C14—C15 | −57.7 (2) |
C17—C3—C4—C5 | −168.49 (17) | C13—C14—C15—C16 | 52.0 (3) |
C3—C4—C5—N1i | −71.9 (2) | C14—C15—C16—C2 | −52.8 (2) |
C5i—N1—C6—C7 | 77.4 (2) | N2—C2—C16—C15 | −178.66 (17) |
C1—N1—C6—C7 | −153.27 (17) | C1—C2—C16—C15 | 56.8 (2) |
Symmetry code: (i) −x+1, −y+1, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2N···N1i | 0.86 (2) | 2.32 (2) | 3.025 (2) | 139.9 (19) |
Symmetry code: (i) −x+1, −y+1, −z+1. |
Footnotes
‡Permanent address: Department of Chemistry, Andong National University, Andong 760-749, South Korea. E-mail: jhchoi@andong.ac.kr
Acknowledgements
We thank G. S. Nichol for helpful discussions. This work was supported by a Korea Research Foundation Grant funded by the Korean Government (MOEHRD, Basic Research Promotion Fund, KRF-2005-013-C00027).
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