organic compounds
3,7,7a-Tri-epi-casuarine pentaacetate
aDipartimento di Scienze Chimiche, Facoltà di Farmacia, Università di Catania, Viale A. Doria 6, 95125 Catania, Italy, bDepartment of Chemical Crystallography, Chemical Research Laboratory, Mansfield Road, Oxford OX1 3TA, England, cDepartment of Organic Chemistry, Chemical Research Laboratory, Mansfield Road, Oxford OX1 3TA, England, dMNLPharma Limited, Institute of Grassland and Environmental Research, Aberystwyth SY23 3EB, Dyfed, Wales, and eGlycobiology Institute, Department of Biochemistry, Oxford University, South Parks Road, Oxford OX1 3QU, England
*Correspondence e-mail: fpunzo@unict.it
The relative stereochemistry at six contiguous centres in an analogue of the natural product casuarine, viz. 3,7,7a-tri-epi-casuarine pentaacetate, C18H25NO10, has been established by an analysis of a crystalline pentaacetate.
Comment
The structure of casuarine, (1) (see scheme) (Nash et al., 1994), also isolated as its 6-α-D-glucoside (Wormald et al., 1996), has been determined by X-ray crystallography. The of 3-epi-casuarine, (2), has also been reported (Newton et al., 2004). Only two syntheses of casuarine have been published to date (Denmark & Hurd, 2000; Izquierdo et al., 2005). Casuarine, with six contiguous stereogenic centres, is a potent α-glucosidase inhibitor and is the most heavily oxygenated of the polyhydroxylated which can be viewed as sugar mimics (Asano et al., 2000; Winchester & Fleet, 1992). Synthetic studies on the of casuarine are scant, and none of the reported significantly inhibited any glycosidase (Bell et al., 1997). Nonetheless, some casuarine analogues have promise as vaccine adjuvants and as potential candidates for viral disease and non-cytotoxic cancer therapies (Nash et al., 2004).
As part of a structure–activity investigation of the epi casuarine (3) was prepared by a route which did not define the at two centres. Although (3) has not been crystallized, peracetylation by acetic anhydride in pyridine gave the crystalline pentaacetate, (4), the of which is reported in this paper (Fig. 1 and Table 1).
of casuarine, the tri-This study firmly establishes the D-glucose as the starting material in the synthesis. A combination of crystal structures and NMR studies have established solid-state and solution conformations of a number of of the less oxygenated alexines (Wormald et al., 1998; Kato et al., 2003) which may be used to rationalize their biological activity. Similar structural studies on the of casuarine may permit the development of rationales for their novel biological activities. The crystal packing, represented in Fig. 2, highlights long-range interactions between the acetate fragments that are both non-polar, i.e. between methyl groups, and polar, i.e. between O atoms.
at all six stereogenic centres. The of (4) is determined by the use ofExperimental
Compound (4) was crystallized by dissolving it in cyclohexane, adding ethanol (in an approximate ratio of 9:1), and allowing slow competitive evaporation of the two solvents until clear colourless crystals formed.
Crystal data
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Refinement
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In the absence of significant Uiso(H) values in the range 1.2–1.5Ueq of the carrier atom.
effects, Friedel pairs were merged, and the was assigned from the known configuration of the starting material. H atoms were seen in a difference density synthesis. Those attached to C atoms were repositioned geometrically. The H atoms were initially refined with soft restraints on the bond lengths and angles to regularize their geometry, after which they were included with riding constraints, with C—H = 0.93–0.98 Å and withData collection: COLLECT (Nonius, 2001); cell and data reduction: DENZO/SCALEPACK (Otwinowski & Minor, 1997); program(s) used to solve structure: SIR92 (Altomare et al., 1994); program(s) used to refine structure: CRYSTALS (Betteridge et al., 2003); molecular graphics: CAMERON (Watkin et al., 1996); software used to prepare material for publication: CRYSTALS.
Supporting information
https://doi.org/10.1107/S1600536806003539/tk6311sup1.cif
contains datablocks global, 4. DOI:Structure factors: contains datablock 4. DOI: https://doi.org/10.1107/S1600536806003539/tk63114sup2.hkl
Data collection: COLLECT (Nonius, 2001); cell
DENZO/SCALEPACK; data reduction: DENZO/SCALEPACK (Otwinowski & Minor, 1997); program(s) used to solve structure: SIR92 (Altomare et al., 1994); program(s) used to refine structure: CRYSTALS (Betteridge et al., 2003); molecular graphics: CAMERON (Watkin et al., 1996); software used to prepare material for publication: CRYSTALS.C18H25NO10 | F(000) = 440 |
Mr = 415.40 | Dx = 1.383 Mg m−3 |
Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2yb | Cell parameters from 2338 reflections |
a = 9.8357 (3) Å | θ = 5–30° |
b = 5.9443 (2) Å | µ = 0.11 mm−1 |
c = 17.2146 (6) Å | T = 120 K |
β = 97.6513 (12)° | Plate, colourless |
V = 997.51 (6) Å3 | 0.30 × 0.10 × 0.10 mm |
Z = 2 |
Nonius KappaCCD diffractometer | 2513 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.017 |
ω scans | θmax = 30.0°, θmin = 5.1° |
Absorption correction: multi-scan (DENZO/SCALEPACK; Otwinowski & Minor, 1997) | h = −13→13 |
Tmin = 0.99, Tmax = 0.99 | k = −8→7 |
5106 measured reflections | l = −24→24 |
3067 independent reflections |
Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
Least-squares matrix: full | H-atom parameters constrained |
R[F2 > 2σ(F2)] = 0.039 | w = 1/[σ2(F2) + (0.04P)2 + 0.2P], where P = [max(Fo2,0) + 2Fc2]/3 |
wR(F2) = 0.091 | (Δ/σ)max < 0.001 |
S = 0.94 | Δρmax = 0.33 e Å−3 |
3067 reflections | Δρmin = −0.35 e Å−3 |
263 parameters | Extinction correction: Larson (1970), equation 22 |
1 restraint | Extinction coefficient: 180 (40) |
Primary atom site location: structure-invariant direct methods |
x | y | z | Uiso*/Ueq | ||
C1 | 0.25143 (19) | 0.1388 (3) | 0.23642 (10) | 0.0187 | |
N2 | 0.33807 (16) | 0.3266 (3) | 0.21412 (9) | 0.0193 | |
C3 | 0.2539 (2) | 0.4752 (3) | 0.15921 (11) | 0.0201 | |
C4 | 0.1427 (2) | 0.3181 (4) | 0.11951 (11) | 0.0219 | |
C5 | 0.1107 (2) | 0.1667 (4) | 0.18624 (11) | 0.0212 | |
O6 | 0.01706 (14) | 0.2978 (3) | 0.22668 (8) | 0.0255 | |
C7 | −0.0695 (2) | 0.1806 (5) | 0.26674 (13) | 0.0297 | |
O8 | −0.07114 (18) | −0.0205 (3) | 0.27014 (10) | 0.0399 | |
C9 | −0.1587 (2) | 0.3359 (5) | 0.30573 (15) | 0.0419 | |
O10 | 0.19617 (14) | 0.1727 (3) | 0.06328 (7) | 0.0237 | |
C11 | 0.1557 (2) | 0.2161 (4) | −0.01361 (12) | 0.0286 | |
O12 | 0.0866 (2) | 0.3756 (4) | −0.03595 (9) | 0.0480 | |
C13 | 0.2093 (2) | 0.0416 (4) | −0.06385 (12) | 0.0333 | |
C14 | 0.3328 (2) | 0.5918 (4) | 0.10152 (12) | 0.0252 | |
O15 | 0.42996 (15) | 0.7417 (3) | 0.14594 (8) | 0.0262 | |
C16 | 0.5080 (2) | 0.8625 (4) | 0.10221 (13) | 0.0279 | |
O17 | 0.49969 (18) | 0.8407 (3) | 0.03195 (9) | 0.0368 | |
C18 | 0.6021 (3) | 1.0182 (4) | 0.15052 (15) | 0.0370 | |
C19 | 0.4086 (2) | 0.4316 (4) | 0.28622 (11) | 0.0240 | |
C20 | 0.3997 (2) | 0.2597 (3) | 0.35015 (11) | 0.0217 | |
C21 | 0.2588 (2) | 0.1574 (3) | 0.32480 (11) | 0.0197 | |
O22 | 0.23933 (14) | −0.0592 (2) | 0.35803 (8) | 0.0226 | |
C23 | 0.1593 (2) | −0.0686 (4) | 0.41678 (12) | 0.0253 | |
O24 | 0.11413 (18) | 0.0956 (3) | 0.44445 (10) | 0.0387 | |
C25 | 0.1360 (3) | −0.3071 (4) | 0.43825 (15) | 0.0405 | |
O26 | 0.50414 (14) | 0.0887 (3) | 0.34492 (8) | 0.0244 | |
C27 | 0.5616 (2) | −0.0068 (4) | 0.41296 (12) | 0.0293 | |
O28 | 0.5325 (2) | 0.0480 (4) | 0.47537 (9) | 0.0593 | |
C29 | 0.6623 (2) | −0.1838 (4) | 0.39999 (13) | 0.0326 | |
H11 | 0.2925 | −0.0032 | 0.2234 | 0.0223* | |
H31 | 0.2060 | 0.5904 | 0.1875 | 0.0248* | |
H41 | 0.0609 | 0.4045 | 0.0941 | 0.0275* | |
H51 | 0.0706 | 0.0200 | 0.1689 | 0.0255* | |
H91 | −0.2507 | 0.2740 | 0.3010 | 0.0636* | |
H92 | −0.1571 | 0.4835 | 0.2819 | 0.0633* | |
H93 | −0.1231 | 0.3461 | 0.3599 | 0.0636* | |
H131 | 0.1851 | 0.0841 | −0.1188 | 0.0471* | |
H132 | 0.1720 | −0.1038 | −0.0543 | 0.0467* | |
H133 | 0.3078 | 0.0384 | −0.0515 | 0.0471* | |
H141 | 0.2686 | 0.6793 | 0.0640 | 0.0318* | |
H142 | 0.3809 | 0.4833 | 0.0725 | 0.0319* | |
H181 | 0.6624 | 1.0880 | 0.1172 | 0.0567* | |
H182 | 0.5493 | 1.1306 | 0.1729 | 0.0568* | |
H183 | 0.6548 | 0.9355 | 0.1916 | 0.0567* | |
H191 | 0.3629 | 0.5702 | 0.2997 | 0.0295* | |
H192 | 0.5052 | 0.4634 | 0.2795 | 0.0288* | |
H201 | 0.4091 | 0.3228 | 0.4030 | 0.0262* | |
H211 | 0.1877 | 0.2619 | 0.3382 | 0.0231* | |
H251 | 0.0736 | −0.3105 | 0.4783 | 0.0641* | |
H252 | 0.0947 | −0.3875 | 0.3925 | 0.0643* | |
H253 | 0.2224 | −0.3763 | 0.4583 | 0.0642* | |
H291 | 0.7195 | −0.2230 | 0.4466 | 0.0486* | |
H292 | 0.6200 | −0.3170 | 0.3772 | 0.0491* | |
H293 | 0.7217 | −0.1292 | 0.3640 | 0.0489* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0188 (9) | 0.0192 (9) | 0.0185 (9) | −0.0001 (7) | 0.0039 (7) | −0.0001 (7) |
N2 | 0.0206 (8) | 0.0185 (8) | 0.0186 (7) | −0.0027 (7) | 0.0019 (6) | −0.0008 (7) |
C3 | 0.0225 (10) | 0.0193 (9) | 0.0190 (9) | 0.0011 (8) | 0.0046 (8) | 0.0002 (8) |
C4 | 0.0223 (10) | 0.0254 (10) | 0.0179 (9) | 0.0034 (9) | 0.0027 (7) | 0.0003 (8) |
C5 | 0.0206 (9) | 0.0238 (9) | 0.0200 (9) | −0.0014 (8) | 0.0050 (7) | −0.0014 (8) |
O6 | 0.0186 (7) | 0.0320 (8) | 0.0268 (7) | 0.0007 (6) | 0.0061 (6) | 0.0013 (6) |
C7 | 0.0168 (10) | 0.0447 (14) | 0.0277 (11) | −0.0037 (10) | 0.0028 (8) | 0.0057 (11) |
O8 | 0.0318 (9) | 0.0436 (10) | 0.0464 (10) | −0.0063 (8) | 0.0132 (8) | 0.0078 (9) |
C9 | 0.0269 (12) | 0.0608 (18) | 0.0406 (13) | 0.0054 (13) | 0.0141 (10) | 0.0000 (14) |
O10 | 0.0255 (7) | 0.0282 (7) | 0.0175 (6) | 0.0002 (6) | 0.0028 (5) | −0.0013 (6) |
C11 | 0.0257 (11) | 0.0404 (13) | 0.0190 (10) | −0.0031 (10) | 0.0007 (8) | 0.0007 (9) |
O12 | 0.0587 (12) | 0.0609 (13) | 0.0228 (8) | 0.0217 (11) | −0.0005 (8) | 0.0080 (9) |
C13 | 0.0285 (11) | 0.0487 (15) | 0.0228 (10) | −0.0068 (11) | 0.0028 (9) | −0.0075 (11) |
C14 | 0.0314 (11) | 0.0233 (10) | 0.0219 (10) | −0.0036 (9) | 0.0072 (8) | 0.0001 (9) |
O15 | 0.0310 (8) | 0.0242 (7) | 0.0251 (7) | −0.0069 (6) | 0.0099 (6) | −0.0022 (6) |
C16 | 0.0286 (11) | 0.0220 (10) | 0.0365 (12) | 0.0012 (9) | 0.0169 (9) | 0.0012 (9) |
O17 | 0.0489 (10) | 0.0343 (9) | 0.0309 (8) | −0.0048 (8) | 0.0194 (7) | 0.0041 (8) |
C18 | 0.0356 (13) | 0.0320 (12) | 0.0469 (14) | −0.0081 (11) | 0.0185 (11) | −0.0050 (11) |
C19 | 0.0242 (10) | 0.0239 (10) | 0.0234 (10) | −0.0037 (8) | 0.0015 (8) | −0.0019 (8) |
C20 | 0.0230 (10) | 0.0223 (9) | 0.0196 (9) | 0.0028 (8) | 0.0022 (8) | −0.0021 (8) |
C21 | 0.0230 (9) | 0.0193 (9) | 0.0170 (9) | 0.0023 (8) | 0.0038 (7) | 0.0011 (8) |
O22 | 0.0265 (8) | 0.0212 (7) | 0.0214 (7) | 0.0015 (6) | 0.0079 (6) | 0.0033 (6) |
C23 | 0.0253 (10) | 0.0322 (12) | 0.0193 (9) | −0.0023 (9) | 0.0066 (8) | 0.0013 (9) |
O24 | 0.0484 (10) | 0.0351 (9) | 0.0377 (9) | −0.0026 (9) | 0.0239 (8) | −0.0063 (8) |
C25 | 0.0505 (16) | 0.0342 (13) | 0.0408 (14) | −0.0034 (12) | 0.0212 (12) | 0.0090 (11) |
O26 | 0.0220 (7) | 0.0304 (8) | 0.0203 (7) | 0.0037 (7) | 0.0011 (6) | −0.0005 (6) |
C27 | 0.0324 (12) | 0.0323 (11) | 0.0229 (10) | 0.0036 (10) | 0.0030 (9) | 0.0032 (9) |
O28 | 0.0895 (16) | 0.0656 (15) | 0.0238 (9) | 0.0433 (13) | 0.0116 (9) | 0.0103 (9) |
C29 | 0.0326 (12) | 0.0351 (12) | 0.0292 (11) | 0.0086 (11) | 0.0001 (9) | 0.0005 (10) |
C1—N2 | 1.486 (2) | C14—H142 | 0.975 |
C1—C5 | 1.540 (3) | O15—C16 | 1.351 (2) |
C1—C21 | 1.517 (3) | C16—O17 | 1.208 (3) |
C1—H11 | 0.974 | C16—C18 | 1.483 (3) |
N2—C3 | 1.466 (2) | C18—H181 | 0.972 |
N2—C19 | 1.477 (2) | C18—H182 | 0.958 |
C3—C4 | 1.528 (3) | C18—H183 | 0.956 |
C3—C14 | 1.508 (3) | C19—C20 | 1.513 (3) |
C3—H31 | 0.994 | C19—H191 | 0.981 |
C4—C5 | 1.525 (3) | C19—H192 | 0.991 |
C4—O10 | 1.448 (2) | C20—C21 | 1.523 (3) |
C4—H41 | 1.004 | C20—O26 | 1.456 (2) |
C5—O6 | 1.453 (2) | C20—H201 | 0.976 |
C5—H51 | 0.987 | C21—O22 | 1.432 (2) |
O6—C7 | 1.357 (3) | C21—H211 | 0.986 |
C7—O8 | 1.197 (3) | O22—C23 | 1.363 (2) |
C7—C9 | 1.493 (4) | C23—O24 | 1.197 (3) |
C9—H91 | 0.970 | C23—C25 | 1.490 (3) |
C9—H92 | 0.969 | C25—H251 | 0.982 |
C9—H93 | 0.954 | C25—H252 | 0.964 |
O10—C11 | 1.355 (2) | C25—H253 | 0.966 |
C11—O12 | 1.200 (3) | O26—C27 | 1.355 (2) |
C11—C13 | 1.491 (3) | C27—O28 | 1.193 (3) |
C13—H131 | 0.977 | C27—C29 | 1.482 (3) |
C13—H132 | 0.962 | C29—H291 | 0.946 |
C13—H133 | 0.964 | C29—H292 | 0.954 |
C14—O15 | 1.448 (2) | C29—H293 | 0.963 |
C14—H141 | 0.989 | ||
N2—C1—C5 | 106.11 (15) | O15—C14—H142 | 110.3 |
N2—C1—C21 | 104.58 (15) | H141—C14—H142 | 109.0 |
C5—C1—C21 | 118.30 (16) | C14—O15—C16 | 114.62 (16) |
N2—C1—H11 | 108.8 | O15—C16—O17 | 122.2 (2) |
C5—C1—H11 | 109.5 | O15—C16—C18 | 112.17 (18) |
C21—C1—H11 | 109.1 | O17—C16—C18 | 125.6 (2) |
C1—N2—C3 | 108.97 (14) | C16—C18—H181 | 108.6 |
C1—N2—C19 | 108.76 (15) | C16—C18—H182 | 109.2 |
C3—N2—C19 | 116.67 (16) | H181—C18—H182 | 110.2 |
N2—C3—C4 | 103.27 (16) | C16—C18—H183 | 109.3 |
N2—C3—C14 | 113.92 (16) | H181—C18—H183 | 110.1 |
C4—C3—C14 | 112.75 (15) | H182—C18—H183 | 109.3 |
N2—C3—H31 | 111.3 | N2—C19—C20 | 105.06 (17) |
C4—C3—H31 | 106.4 | N2—C19—H191 | 112.1 |
C14—C3—H31 | 108.9 | C20—C19—H191 | 108.8 |
C3—C4—C5 | 103.33 (15) | N2—C19—H192 | 109.5 |
C3—C4—O10 | 111.18 (15) | C20—C19—H192 | 111.2 |
C5—C4—O10 | 106.33 (16) | H191—C19—H192 | 110.1 |
C3—C4—H41 | 111.5 | C19—C20—C21 | 101.52 (15) |
C5—C4—H41 | 113.3 | C19—C20—O26 | 108.48 (16) |
O10—C4—H41 | 110.8 | C21—C20—O26 | 109.03 (16) |
C1—C5—C4 | 103.08 (15) | C19—C20—H201 | 114.2 |
C1—C5—O6 | 111.65 (15) | C21—C20—H201 | 113.0 |
C4—C5—O6 | 104.60 (16) | O26—C20—H201 | 110.2 |
C1—C5—H51 | 111.6 | C20—C21—C1 | 103.69 (16) |
C4—C5—H51 | 114.1 | C20—C21—O22 | 114.18 (16) |
O6—C5—H51 | 111.4 | C1—C21—O22 | 110.11 (16) |
C5—O6—C7 | 116.67 (17) | C20—C21—H211 | 109.2 |
O6—C7—O8 | 123.5 (2) | C1—C21—H211 | 109.9 |
O6—C7—C9 | 110.9 (2) | O22—C21—H211 | 109.6 |
O8—C7—C9 | 125.6 (2) | C21—O22—C23 | 117.04 (16) |
C7—C9—H91 | 109.0 | O22—C23—O24 | 122.9 (2) |
C7—C9—H92 | 109.0 | O22—C23—C25 | 110.27 (19) |
H91—C9—H92 | 112.0 | O24—C23—C25 | 126.8 (2) |
C7—C9—H93 | 108.5 | C23—C25—H251 | 109.0 |
H91—C9—H93 | 108.8 | C23—C25—H252 | 109.3 |
H92—C9—H93 | 109.4 | H251—C25—H252 | 109.2 |
C4—O10—C11 | 116.98 (16) | C23—C25—H253 | 109.7 |
O10—C11—O12 | 122.9 (2) | H251—C25—H253 | 110.1 |
O10—C11—C13 | 110.71 (19) | H252—C25—H253 | 109.6 |
O12—C11—C13 | 126.35 (19) | C20—O26—C27 | 117.07 (16) |
C11—C13—H131 | 108.8 | O26—C27—O28 | 122.8 (2) |
C11—C13—H132 | 110.7 | O26—C27—C29 | 112.16 (18) |
H131—C13—H132 | 110.5 | O28—C27—C29 | 125.1 (2) |
C11—C13—H133 | 107.9 | C27—C29—H291 | 112.4 |
H131—C13—H133 | 109.0 | C27—C29—H292 | 112.8 |
H132—C13—H133 | 109.8 | H291—C29—H292 | 108.8 |
C3—C14—O15 | 107.24 (15) | C27—C29—H293 | 109.4 |
C3—C14—H141 | 109.4 | H291—C29—H293 | 106.6 |
O15—C14—H141 | 109.9 | H292—C29—H293 | 106.6 |
C3—C14—H142 | 111.1 |
Footnotes
‡Visiting Scientist at the Department of Chemical Crystallography, Chemical Research Laboratory, Mansfield Road, Oxford OX1 3TA, England
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