organic compounds
(2Z)-2-Anilino-2-[oxido(phenyl)iminio]-N-(2-pyridyl)acetamide methanol 0.425-solvate
aFaculty of Chemistry, Jagiellonian University, Ingardena 3, 30-060 Kraków, Poland
*Correspondence e-mail: hodorowm@chemia.uj.edu.pl
The title compound, C19H16N4O2·0.425CH4O, crystallizes with two formula units per Researching its constitutes part of a study of the nature of interactions between the N+—O− group and the vicinal NH group. The nitrone group and methanol solvent molecules are linked via four N—H⋯O and one O—H⋯O hydrogen bonds, with donor–acceptor distances of 2.603 (3)–2.730 (3) and 2.770 (3) Å, respectively. The also involves two intermolecular N—H⋯N hydrogen bonds.
Related literature
For literature related to the synthesis of the title compound, see: Branco et al. (1992); Aurich (1968); Guimanini et al. (1999); Szantay et al. (1965); Southan et al. (1998); Warshaw et al. (1989). For literature on nitrones as an active equivalent of the C=O group, see: Boruah et al. (2003); Freisleben et al. (2002); Saito et al. (2001); Gravestock et al. (2000); Torssell (1988). For examples of nitrones with a vicinal NH group, see: Janzen et al. (1997); Clement et al. (1987); Baranowska et al. (1977); Aurich et al. (1976); Rosenberg et al. (1972). For literature on the medical use of these compounds, see: Floyd (2006). For related literature, see: Allen et al. (1987).
Experimental
Crystal data
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Refinement
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Data collection: COLLECT (Nonius, 2000); cell SCALEPACK (Otwinowski & Minor, 1997); data reduction: DENZO (Otwinowski & Minor, 1997) and SCALEPACK; program(s) used to solve structure: SIR92 (Altomare et al., 1994); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).
Supporting information
10.1107/S1600536808003346/er2043sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808003346/er2043Isup2.hkl
Slow recrystallization from methanol at room temperature afforded crystals suitable for X-ray measurements. The ratio (2Z)-2-anilino-2-[oxido(phenyl)imino]-N-pyridin-2-ylacetamide to metanol molecule equals 2: 0.85 was confirmed by elemental analysis.
The contents of methanol in the
was determined by the of structural parametres assuming its site occupancy factor in the range 1.000 - 0.500. The best solution (using wR2 as criterion) was found for 0.850 methanol molecule per two nitrone molecules. All H atom positions were observed in difference Fourier map. Nevertheless, in the procedure the hydrogen atoms were positioned geometrically and refined using a riding model with C—H = 0.93 Å for aromatic CH, N—H = 0.86 Å. In methanol molecule CH3 group with assumed tetrahedral angles was refined including about the C—O bond, C—H = 0.96 Å and O—H = 0.82 Å. Uiso(H) = 1.5Ueq(C) for methyl groups in methanol and Uiso(H) = 1.2Ueq(C) for all other H atoms.Data collection: COLLECT (Nonius, 2000); cell
SCALEPACK (Otwinowski & Minor, 1997); data reduction: DENZO (Otwinowski & Minor, 1997) and SCALEPACK; program(s) used to solve structure: SIR92 (Altomare et al., 1994); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).Fig. 1. An ORTEP-3 (Farrugia, 1997) view of the nitrone molecules with the crystallographic numbering scheme of atoms: the conformation of A molecule in projecton on C8AN11AN12A plane. Displacement ellipsoids of non-H atoms are drawn at 30% probability level. | |
Fig. 2. An ORTEP-3 (Farrugia, 1997) view of the nitrone molecules with the crystallographic numbering scheme of atoms: the conformation of B molecule in projecton on C8BN11BN12B plane; Displacement ellipsoids of non-H atoms are drawn at 30% probability level. | |
Fig. 3. Drawing of the crystal packing viewed along [010] (Brandenburg, 2006). Hydrogen atoms were omitted for clarity. |
C19H16N4O2·0.425CH4O | F(000) = 1453 |
Mr = 345.98 | Dx = 1.255 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
a = 18.7604 (3) Å | Cell parameters from 6743 reflections |
b = 9.4701 (2) Å | θ = 1.0–25.4° |
c = 21.2839 (5) Å | µ = 0.09 mm−1 |
β = 104.375 (1)° | T = 293 K |
V = 3662.97 (13) Å3 | Plate, colourless |
Z = 8 | 0.11 × 0.09 × 0.02 mm |
Nonius KappaCCD diffractometer | 6668 independent reflections |
Radiation source: fine-focus sealed tube | 3520 reflections with I > 2σ(I) |
Horizontally mounted graphite crystal monochromator | Rint = 0.065 |
Detector resolution: 9 pixels mm-1 | θmax = 25.4°, θmin = 3.4° |
ϕ and ω scans to fill asymmetric unit | h = 0→22 |
Absorption correction: multi-scan (DENZO and SCALEPACK; Otwinowski & Minor, 1997) | k = −10→11 |
Tmin = 0.991, Tmax = 0.998 | l = −25→24 |
12501 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.067 | H-atom parameters constrained |
wR(F2) = 0.156 | w = 1/[σ2(Fo2) + (0.0657P)2 + 0.3423P] where P = (Fo2 + 2Fc2)/3 |
S = 1.03 | (Δ/σ)max = 0.001 |
6668 reflections | Δρmax = 0.28 e Å−3 |
474 parameters | Δρmin = −0.14 e Å−3 |
548 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0055 (7) |
C19H16N4O2·0.425CH4O | V = 3662.97 (13) Å3 |
Mr = 345.98 | Z = 8 |
Monoclinic, P21/c | Mo Kα radiation |
a = 18.7604 (3) Å | µ = 0.09 mm−1 |
b = 9.4701 (2) Å | T = 293 K |
c = 21.2839 (5) Å | 0.11 × 0.09 × 0.02 mm |
β = 104.375 (1)° |
Nonius KappaCCD diffractometer | 6668 independent reflections |
Absorption correction: multi-scan (DENZO and SCALEPACK; Otwinowski & Minor, 1997) | 3520 reflections with I > 2σ(I) |
Tmin = 0.991, Tmax = 0.998 | Rint = 0.065 |
12501 measured reflections |
R[F2 > 2σ(F2)] = 0.067 | 548 restraints |
wR(F2) = 0.156 | H-atom parameters constrained |
S = 1.03 | Δρmax = 0.28 e Å−3 |
6668 reflections | Δρmin = −0.14 e Å−3 |
474 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
N1A | 0.11545 (13) | 0.6719 (2) | 0.19762 (11) | 0.0661 (6) | |
C2A | 0.09371 (14) | 0.8040 (3) | 0.18252 (11) | 0.0483 (6) | |
C3A | 0.02414 (14) | 0.8515 (3) | 0.17983 (13) | 0.0616 (7) | |
H3A | 0.0107 | 0.9443 | 0.1682 | 0.074* | |
C4A | −0.02552 (16) | 0.7579 (4) | 0.19488 (15) | 0.0771 (9) | |
H4A | −0.0732 | 0.7871 | 0.1935 | 0.092* | |
C5A | −0.00442 (19) | 0.6229 (4) | 0.21166 (16) | 0.0817 (9) | |
H5A | −0.0368 | 0.5585 | 0.2226 | 0.098* | |
C6A | 0.06588 (19) | 0.5847 (3) | 0.21201 (16) | 0.0828 (10) | |
H6A | 0.0801 | 0.4920 | 0.2230 | 0.099* | |
N7A | 0.14984 (11) | 0.8889 (2) | 0.16925 (9) | 0.0501 (6) | |
H7A | 0.1889 | 0.8460 | 0.1652 | 0.060* | |
C8A | 0.14887 (14) | 1.0299 (3) | 0.16219 (12) | 0.0502 (7) | |
O9A | 0.09855 (10) | 1.10851 (19) | 0.16598 (9) | 0.0668 (5) | |
C10A | 0.21768 (14) | 1.0904 (3) | 0.14793 (13) | 0.0471 (6) | |
N11A | 0.23810 (11) | 1.0608 (2) | 0.09302 (10) | 0.0524 (6) | |
H11A | 0.2816 | 1.0874 | 0.0919 | 0.063* | |
N12A | 0.25797 (11) | 1.1807 (2) | 0.18870 (10) | 0.0499 (5) | |
O13A | 0.31518 (9) | 1.24341 (18) | 0.17334 (8) | 0.0604 (5) | |
C14A | 0.25051 (13) | 1.2046 (3) | 0.25341 (12) | 0.0504 (7) | |
C15A | 0.24581 (15) | 1.3418 (3) | 0.27317 (14) | 0.0670 (8) | |
H15A | 0.2466 | 1.4164 | 0.2449 | 0.080* | |
C16A | 0.23996 (17) | 1.3673 (4) | 0.33547 (17) | 0.0835 (9) | |
H16A | 0.2365 | 1.4596 | 0.3494 | 0.100* | |
C17A | 0.23921 (18) | 1.2574 (5) | 0.37671 (17) | 0.0926 (11) | |
H17A | 0.2343 | 1.2749 | 0.4184 | 0.111* | |
C18A | 0.24558 (19) | 1.1217 (4) | 0.35712 (16) | 0.0885 (10) | |
H18A | 0.2458 | 1.0474 | 0.3858 | 0.106* | |
C19A | 0.25170 (16) | 1.0944 (3) | 0.29510 (14) | 0.0693 (8) | |
H19A | 0.2566 | 1.0022 | 0.2818 | 0.083* | |
C20A | 0.19658 (15) | 0.9913 (3) | 0.03686 (12) | 0.0496 (7) | |
C21A | 0.12171 (17) | 1.0074 (3) | 0.01520 (14) | 0.0697 (8) | |
H21A | 0.0962 | 1.0617 | 0.0388 | 0.084* | |
C22A | 0.0844 (2) | 0.9430 (4) | −0.04161 (17) | 0.0858 (10) | |
H22A | 0.0335 | 0.9522 | −0.0554 | 0.103* | |
C23A | 0.1207 (2) | 0.8662 (4) | −0.07771 (16) | 0.0854 (10) | |
H23A | 0.0951 | 0.8253 | −0.1165 | 0.102* | |
C24A | 0.1954 (2) | 0.8495 (3) | −0.05644 (16) | 0.0801 (9) | |
H24A | 0.2208 | 0.7974 | −0.0810 | 0.096* | |
C25A | 0.23329 (16) | 0.9101 (3) | 0.00149 (14) | 0.0619 (7) | |
H25A | 0.2837 | 0.8958 | 0.0165 | 0.074* | |
N1B | 0.36559 (12) | 0.1853 (2) | 0.04201 (11) | 0.0607 (6) | |
C2B | 0.37519 (14) | 0.3237 (3) | 0.03646 (13) | 0.0536 (7) | |
C3B | 0.41689 (16) | 0.3812 (3) | −0.00164 (15) | 0.0749 (9) | |
H3B | 0.4225 | 0.4785 | −0.0042 | 0.090* | |
C4B | 0.45036 (19) | 0.2895 (4) | −0.03606 (17) | 0.0926 (11) | |
H4B | 0.4791 | 0.3245 | −0.0624 | 0.111* | |
C5B | 0.44097 (18) | 0.1478 (4) | −0.03111 (17) | 0.0851 (10) | |
H5B | 0.4628 | 0.0846 | −0.0541 | 0.102* | |
C6B | 0.39919 (17) | 0.1009 (3) | 0.00806 (16) | 0.0772 (9) | |
H6B | 0.3935 | 0.0038 | 0.0116 | 0.093* | |
N7B | 0.33914 (11) | 0.4052 (2) | 0.07475 (10) | 0.0536 (6) | |
H7B | 0.3210 | 0.3604 | 0.1023 | 0.064* | |
C8B | 0.33054 (14) | 0.5460 (3) | 0.07221 (13) | 0.0532 (7) | |
O9B | 0.35086 (11) | 0.62721 (19) | 0.03605 (9) | 0.0702 (6) | |
C10B | 0.28999 (14) | 0.6032 (3) | 0.12011 (12) | 0.0485 (7) | |
N11B | 0.22196 (12) | 0.5613 (2) | 0.12126 (11) | 0.0564 (6) | |
H11B | 0.2086 | 0.5778 | 0.1564 | 0.068* | |
N12B | 0.32199 (11) | 0.7001 (2) | 0.16157 (10) | 0.0517 (6) | |
O13B | 0.28421 (9) | 0.76002 (18) | 0.20063 (8) | 0.0605 (5) | |
C14B | 0.39782 (14) | 0.7415 (3) | 0.17218 (12) | 0.0517 (7) | |
C15B | 0.41339 (16) | 0.8830 (3) | 0.16710 (13) | 0.0647 (8) | |
H15B | 0.3756 | 0.9489 | 0.1561 | 0.078* | |
C16B | 0.48549 (18) | 0.9248 (4) | 0.17850 (14) | 0.0761 (9) | |
H16B | 0.4965 | 1.0195 | 0.1743 | 0.091* | |
C17B | 0.54132 (18) | 0.8285 (5) | 0.19598 (16) | 0.0879 (10) | |
H17B | 0.5901 | 0.8578 | 0.2038 | 0.105* | |
C18B | 0.52519 (17) | 0.6890 (4) | 0.20198 (16) | 0.0870 (10) | |
H18B | 0.5632 | 0.6238 | 0.2143 | 0.104* | |
C19B | 0.45248 (16) | 0.6438 (3) | 0.18974 (14) | 0.0700 (8) | |
H19B | 0.4414 | 0.5489 | 0.1935 | 0.084* | |
C25B | 0.11891 (15) | 0.4058 (3) | 0.08793 (15) | 0.0664 (8) | |
H25B | 0.1223 | 0.3862 | 0.1314 | 0.080* | |
C24B | 0.06318 (18) | 0.3478 (3) | 0.0403 (2) | 0.0829 (10) | |
H24B | 0.0276 | 0.2922 | 0.0518 | 0.099* | |
C23B | 0.05954 (19) | 0.3712 (3) | −0.0239 (2) | 0.0888 (10) | |
H23B | 0.0224 | 0.3300 | −0.0559 | 0.107* | |
C22B | 0.1108 (2) | 0.4551 (4) | −0.04032 (18) | 0.0916 (10) | |
H22B | 0.1086 | 0.4700 | −0.0839 | 0.110* | |
C21B | 0.16563 (10) | 0.51847 (18) | 0.00578 (9) | 0.0730 (8) | |
H21B | 0.1996 | 0.5776 | −0.0062 | 0.088* | |
C20B | 0.16951 (10) | 0.49270 (18) | 0.07069 (9) | 0.0549 (7) | |
O51 | 0.30526 (10) | 0.73186 (18) | 0.33354 (9) | 0.119 (2) | 0.586 (7) |
H51 | 0.2985 | 0.7400 | 0.2941 | 0.178* | 0.586 (7) |
C51 | 0.38176 (10) | 0.76316 (18) | 0.36484 (9) | 0.133 (4) | 0.586 (7) |
H51A | 0.3863 | 0.8606 | 0.3777 | 0.200* | 0.586 (7) |
H51B | 0.4117 | 0.7453 | 0.3351 | 0.200* | 0.586 (7) |
H51C | 0.3978 | 0.7043 | 0.4024 | 0.200* | 0.586 (7) |
O52 | 0.35159 (10) | 0.68397 (18) | 0.34082 (9) | 0.143 (7) | 0.264 (7) |
H52 | 0.3218 | 0.6949 | 0.3058 | 0.215* | 0.264 (7) |
C52 | 0.40649 (10) | 0.80407 (18) | 0.35212 (9) | 0.171 (11) | 0.264 (7) |
H52A | 0.3823 | 0.8894 | 0.3339 | 0.257* | 0.264 (7) |
H52B | 0.4455 | 0.7825 | 0.3318 | 0.257* | 0.264 (7) |
H52C | 0.4265 | 0.8165 | 0.3979 | 0.257* | 0.264 (7) |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1A | 0.0653 (16) | 0.0595 (15) | 0.0838 (17) | −0.0015 (12) | 0.0379 (13) | 0.0106 (13) |
C2A | 0.0439 (16) | 0.0569 (17) | 0.0461 (15) | −0.0054 (13) | 0.0151 (13) | −0.0046 (13) |
C3A | 0.0460 (17) | 0.0653 (18) | 0.074 (2) | −0.0036 (14) | 0.0162 (15) | −0.0060 (15) |
C4A | 0.0511 (19) | 0.093 (2) | 0.092 (2) | −0.0105 (17) | 0.0272 (17) | −0.0084 (19) |
C5A | 0.079 (2) | 0.087 (2) | 0.092 (2) | −0.0212 (19) | 0.046 (2) | 0.0020 (19) |
C6A | 0.084 (2) | 0.073 (2) | 0.106 (3) | −0.0031 (18) | 0.051 (2) | 0.0174 (18) |
N7A | 0.0426 (12) | 0.0511 (14) | 0.0604 (14) | 0.0030 (10) | 0.0201 (11) | −0.0014 (10) |
C8A | 0.0447 (17) | 0.0561 (19) | 0.0515 (16) | 0.0012 (14) | 0.0154 (13) | −0.0050 (13) |
O9A | 0.0513 (12) | 0.0618 (12) | 0.0934 (15) | 0.0078 (10) | 0.0297 (11) | 0.0021 (10) |
C10A | 0.0442 (15) | 0.0483 (15) | 0.0520 (17) | 0.0052 (13) | 0.0180 (14) | 0.0013 (13) |
N11A | 0.0459 (13) | 0.0593 (13) | 0.0557 (14) | −0.0028 (11) | 0.0192 (12) | −0.0051 (11) |
N12A | 0.0442 (13) | 0.0550 (13) | 0.0519 (14) | −0.0028 (11) | 0.0150 (11) | −0.0001 (11) |
O13A | 0.0474 (11) | 0.0753 (12) | 0.0620 (12) | −0.0126 (9) | 0.0201 (9) | −0.0008 (9) |
C14A | 0.0388 (15) | 0.0658 (18) | 0.0468 (16) | −0.0034 (13) | 0.0109 (12) | −0.0041 (14) |
C15A | 0.067 (2) | 0.071 (2) | 0.064 (2) | −0.0014 (15) | 0.0177 (16) | −0.0080 (15) |
C16A | 0.077 (2) | 0.100 (2) | 0.074 (2) | −0.0006 (19) | 0.0199 (19) | −0.026 (2) |
C17A | 0.078 (2) | 0.148 (3) | 0.053 (2) | −0.011 (2) | 0.0190 (18) | −0.020 (2) |
C18A | 0.095 (3) | 0.112 (3) | 0.057 (2) | −0.012 (2) | 0.0167 (19) | 0.0110 (19) |
C19A | 0.079 (2) | 0.0738 (19) | 0.0555 (19) | −0.0043 (16) | 0.0164 (16) | 0.0039 (16) |
C20A | 0.0537 (17) | 0.0462 (15) | 0.0496 (16) | −0.0016 (13) | 0.0142 (14) | 0.0028 (13) |
C21A | 0.062 (2) | 0.079 (2) | 0.0645 (19) | 0.0074 (16) | 0.0091 (16) | −0.0059 (16) |
C22A | 0.073 (2) | 0.104 (3) | 0.071 (2) | −0.006 (2) | 0.0009 (18) | 0.0038 (19) |
C23A | 0.104 (3) | 0.085 (2) | 0.062 (2) | −0.023 (2) | 0.009 (2) | −0.0073 (17) |
C24A | 0.111 (3) | 0.070 (2) | 0.067 (2) | −0.009 (2) | 0.036 (2) | −0.0120 (16) |
C25A | 0.0666 (18) | 0.0615 (17) | 0.0625 (18) | −0.0035 (15) | 0.0256 (15) | −0.0065 (15) |
N1B | 0.0583 (14) | 0.0602 (15) | 0.0723 (16) | 0.0033 (11) | 0.0325 (12) | −0.0032 (12) |
C2B | 0.0468 (16) | 0.0611 (18) | 0.0580 (17) | 0.0001 (13) | 0.0226 (14) | −0.0036 (14) |
C3B | 0.083 (2) | 0.0724 (19) | 0.088 (2) | −0.0073 (17) | 0.0549 (19) | −0.0055 (17) |
C4B | 0.101 (3) | 0.098 (3) | 0.104 (3) | −0.008 (2) | 0.072 (2) | −0.008 (2) |
C5B | 0.085 (2) | 0.084 (2) | 0.102 (3) | 0.0070 (19) | 0.054 (2) | −0.016 (2) |
C6B | 0.077 (2) | 0.0695 (19) | 0.101 (2) | 0.0023 (17) | 0.053 (2) | −0.0116 (18) |
N7B | 0.0574 (14) | 0.0529 (15) | 0.0600 (14) | −0.0003 (11) | 0.0322 (12) | −0.0002 (11) |
C8B | 0.0508 (17) | 0.0536 (19) | 0.0573 (18) | −0.0028 (13) | 0.0174 (14) | 0.0028 (14) |
O9B | 0.0851 (14) | 0.0621 (12) | 0.0752 (14) | 0.0014 (10) | 0.0421 (12) | 0.0134 (11) |
C10B | 0.0479 (17) | 0.0466 (15) | 0.0554 (17) | 0.0021 (13) | 0.0210 (14) | 0.0038 (13) |
N11B | 0.0542 (15) | 0.0570 (13) | 0.0637 (15) | −0.0060 (11) | 0.0257 (12) | −0.0043 (11) |
N12B | 0.0452 (14) | 0.0566 (13) | 0.0564 (14) | 0.0059 (11) | 0.0184 (12) | −0.0021 (11) |
O13B | 0.0508 (11) | 0.0736 (12) | 0.0607 (12) | 0.0089 (9) | 0.0205 (9) | −0.0089 (9) |
C14B | 0.0406 (16) | 0.0643 (18) | 0.0499 (16) | 0.0023 (13) | 0.0106 (13) | 0.0018 (13) |
C15B | 0.0551 (18) | 0.0648 (19) | 0.070 (2) | −0.0006 (15) | 0.0077 (15) | −0.0024 (15) |
C16B | 0.061 (2) | 0.088 (2) | 0.077 (2) | −0.0195 (18) | 0.0125 (17) | −0.0088 (17) |
C17B | 0.050 (2) | 0.130 (3) | 0.081 (2) | −0.012 (2) | 0.0120 (17) | 0.002 (2) |
C18B | 0.049 (2) | 0.117 (3) | 0.089 (2) | 0.0193 (19) | 0.0043 (17) | 0.013 (2) |
C19B | 0.0535 (19) | 0.080 (2) | 0.074 (2) | 0.0140 (16) | 0.0120 (16) | 0.0121 (16) |
C25B | 0.0588 (19) | 0.0571 (17) | 0.086 (2) | −0.0057 (15) | 0.0222 (17) | −0.0033 (16) |
C24B | 0.065 (2) | 0.063 (2) | 0.123 (3) | −0.0111 (16) | 0.026 (2) | −0.012 (2) |
C23B | 0.069 (2) | 0.081 (2) | 0.105 (3) | −0.0058 (18) | 0.002 (2) | −0.026 (2) |
C22B | 0.080 (2) | 0.109 (3) | 0.079 (2) | −0.009 (2) | 0.009 (2) | −0.010 (2) |
C21B | 0.065 (2) | 0.081 (2) | 0.074 (2) | −0.0087 (16) | 0.0184 (17) | 0.0061 (17) |
C20B | 0.0456 (16) | 0.0458 (15) | 0.076 (2) | 0.0007 (13) | 0.0191 (15) | −0.0031 (14) |
O51 | 0.155 (5) | 0.139 (4) | 0.066 (3) | −0.005 (4) | 0.036 (3) | 0.012 (3) |
C51 | 0.128 (7) | 0.143 (8) | 0.117 (8) | −0.016 (7) | 0.010 (6) | 0.012 (6) |
O52 | 0.099 (11) | 0.143 (11) | 0.180 (14) | −0.009 (8) | 0.020 (9) | 0.078 (10) |
C52 | 0.24 (2) | 0.134 (16) | 0.15 (2) | −0.043 (14) | 0.055 (17) | −0.091 (15) |
N1A—C2A | 1.331 (3) | C3B—H3B | 0.9300 |
N1A—C6A | 1.335 (4) | C4B—C5B | 1.361 (4) |
C2A—C3A | 1.368 (3) | C4B—H4B | 0.9300 |
C2A—N7A | 1.408 (3) | C5B—C6B | 1.353 (4) |
C3A—C4A | 1.380 (4) | C5B—H5B | 0.9300 |
C3A—H3A | 0.9300 | C6B—H6B | 0.9300 |
C4A—C5A | 1.360 (4) | N7B—C8B | 1.343 (3) |
C4A—H4A | 0.9300 | N7B—H7B | 0.8600 |
C5A—C6A | 1.366 (4) | C8B—O9B | 1.214 (3) |
C5A—H5A | 0.9300 | C8B—C10B | 1.516 (4) |
C6A—H6A | 0.9300 | C10B—N12B | 1.311 (3) |
N7A—C8A | 1.343 (3) | C10B—N11B | 1.342 (3) |
N7A—H7A | 0.8600 | N11B—C20B | 1.422 (3) |
C8A—O9A | 1.221 (3) | N11B—H11B | 0.8600 |
C8A—C10A | 1.511 (3) | N12B—O13B | 1.344 (2) |
C10A—N12A | 1.315 (3) | N12B—C14B | 1.438 (3) |
C10A—N11A | 1.347 (3) | C14B—C19B | 1.363 (4) |
N11A—C20A | 1.417 (3) | C14B—C15B | 1.381 (4) |
N11A—H11A | 0.8600 | C15B—C16B | 1.372 (4) |
N12A—O13A | 1.336 (2) | C15B—H15B | 0.9300 |
N12A—C14A | 1.436 (3) | C16B—C17B | 1.369 (4) |
C14A—C19A | 1.366 (4) | C16B—H16B | 0.9300 |
C14A—C15A | 1.376 (4) | C17B—C18B | 1.369 (5) |
C15A—C16A | 1.379 (4) | C17B—H17B | 0.9300 |
C15A—H15A | 0.9300 | C18B—C19B | 1.391 (4) |
C16A—C17A | 1.364 (5) | C18B—H18B | 0.9300 |
C16A—H16A | 0.9300 | C19B—H19B | 0.9300 |
C17A—C18A | 1.365 (5) | C25B—C20B | 1.374 (3) |
C17A—H17A | 0.9300 | C25B—C24B | 1.377 (4) |
C18A—C19A | 1.378 (4) | C25B—H25B | 0.9300 |
C18A—H18A | 0.9300 | C24B—C23B | 1.368 (5) |
C19A—H19A | 0.9300 | C24B—H24B | 0.9300 |
C20A—C21A | 1.374 (4) | C23B—C22B | 1.358 (5) |
C20A—C25A | 1.375 (4) | C23B—H23B | 0.9300 |
C21A—C22A | 1.380 (4) | C22B—C21B | 1.371 (4) |
C21A—H21A | 0.9300 | C22B—H22B | 0.9300 |
C22A—C23A | 1.358 (4) | C21B—C20B | 1.3870 |
C22A—H22A | 0.9300 | C21B—H21B | 0.9300 |
C23A—C24A | 1.372 (5) | O51—C51 | 1.4549 |
C23A—H23A | 0.9300 | O51—H51 | 0.8200 |
C24A—C25A | 1.385 (4) | C51—H51A | 0.9600 |
C24A—H24A | 0.9300 | C51—H51B | 0.9600 |
C25A—H25A | 0.9300 | C51—H51C | 0.9600 |
N1B—C2B | 1.332 (3) | O52—C52 | 1.5130 |
N1B—C6B | 1.336 (3) | O52—H52 | 0.8200 |
C2B—C3B | 1.372 (4) | C52—H52A | 0.9600 |
C2B—N7B | 1.410 (3) | C52—H52B | 0.9600 |
C3B—C4B | 1.384 (4) | C52—H52C | 0.9600 |
C2A—N1A—C6A | 116.6 (2) | C5B—C4B—C3B | 119.6 (3) |
N1A—C2A—C3A | 123.5 (2) | C5B—C4B—H4B | 120.2 |
N1A—C2A—N7A | 112.7 (2) | C3B—C4B—H4B | 120.2 |
C3A—C2A—N7A | 123.8 (2) | C6B—C5B—C4B | 118.5 (3) |
C2A—C3A—C4A | 118.1 (3) | C6B—C5B—H5B | 120.8 |
C2A—C3A—H3A | 121.0 | C4B—C5B—H5B | 120.8 |
C4A—C3A—H3A | 121.0 | N1B—C6B—C5B | 124.0 (3) |
C5A—C4A—C3A | 119.7 (3) | N1B—C6B—H6B | 118.0 |
C5A—C4A—H4A | 120.1 | C5B—C6B—H6B | 118.0 |
C3A—C4A—H4A | 120.1 | C8B—N7B—C2B | 126.1 (2) |
C4A—C5A—C6A | 117.9 (3) | C8B—N7B—H7B | 116.9 |
C4A—C5A—H5A | 121.0 | C2B—N7B—H7B | 116.9 |
C6A—C5A—H5A | 121.0 | O9B—C8B—N7B | 126.9 (2) |
N1A—C6A—C5A | 124.2 (3) | O9B—C8B—C10B | 119.3 (2) |
N1A—C6A—H6A | 117.9 | N7B—C8B—C10B | 113.8 (2) |
C5A—C6A—H6A | 117.9 | N12B—C10B—N11B | 118.2 (2) |
C8A—N7A—C2A | 126.9 (2) | N12B—C10B—C8B | 118.7 (2) |
C8A—N7A—H7A | 116.6 | N11B—C10B—C8B | 123.0 (2) |
C2A—N7A—H7A | 116.6 | C10B—N11B—C20B | 127.1 (2) |
O9A—C8A—N7A | 126.0 (2) | C10B—N11B—H11B | 116.4 |
O9A—C8A—C10A | 119.7 (2) | C20B—N11B—H11B | 116.4 |
N7A—C8A—C10A | 114.3 (2) | C10B—N12B—O13B | 119.2 (2) |
N12A—C10A—N11A | 117.8 (2) | C10B—N12B—C14B | 124.5 (2) |
N12A—C10A—C8A | 119.6 (2) | O13B—N12B—C14B | 116.1 (2) |
N11A—C10A—C8A | 122.5 (2) | C19B—C14B—C15B | 121.4 (3) |
C10A—N11A—C20A | 127.8 (2) | C19B—C14B—N12B | 120.4 (2) |
C10A—N11A—H11A | 116.1 | C15B—C14B—N12B | 118.2 (2) |
C20A—N11A—H11A | 116.1 | C16B—C15B—C14B | 119.0 (3) |
C10A—N12A—O13A | 119.5 (2) | C16B—C15B—H15B | 120.5 |
C10A—N12A—C14A | 123.9 (2) | C14B—C15B—H15B | 120.5 |
O13A—N12A—C14A | 116.11 (19) | C17B—C16B—C15B | 120.7 (3) |
C19A—C14A—C15A | 121.0 (3) | C17B—C16B—H16B | 119.7 |
C19A—C14A—N12A | 120.8 (2) | C15B—C16B—H16B | 119.7 |
C15A—C14A—N12A | 118.1 (2) | C18B—C17B—C16B | 119.8 (3) |
C14A—C15A—C16A | 119.1 (3) | C18B—C17B—H17B | 120.1 |
C14A—C15A—H15A | 120.5 | C16B—C17B—H17B | 120.1 |
C16A—C15A—H15A | 120.5 | C17B—C18B—C19B | 120.6 (3) |
C17A—C16A—C15A | 120.1 (3) | C17B—C18B—H18B | 119.7 |
C17A—C16A—H16A | 120.0 | C19B—C18B—H18B | 119.7 |
C15A—C16A—H16A | 120.0 | C14B—C19B—C18B | 118.6 (3) |
C16A—C17A—C18A | 120.4 (3) | C14B—C19B—H19B | 120.7 |
C16A—C17A—H17A | 119.8 | C18B—C19B—H19B | 120.7 |
C18A—C17A—H17A | 119.8 | C20B—C25B—C24B | 119.4 (3) |
C17A—C18A—C19A | 120.2 (3) | C20B—C25B—H25B | 120.3 |
C17A—C18A—H18A | 119.9 | C24B—C25B—H25B | 120.3 |
C19A—C18A—H18A | 119.9 | C23B—C24B—C25B | 120.8 (3) |
C14A—C19A—C18A | 119.2 (3) | C23B—C24B—H24B | 119.6 |
C14A—C19A—H19A | 120.4 | C25B—C24B—H24B | 119.6 |
C18A—C19A—H19A | 120.4 | C22B—C23B—C24B | 119.2 (3) |
C21A—C20A—C25A | 119.2 (3) | C22B—C23B—H23B | 120.4 |
C21A—C20A—N11A | 122.3 (2) | C24B—C23B—H23B | 120.4 |
C25A—C20A—N11A | 118.5 (2) | C23B—C22B—C21B | 121.7 (3) |
C20A—C21A—C22A | 120.0 (3) | C23B—C22B—H22B | 119.2 |
C20A—C21A—H21A | 120.0 | C21B—C22B—H22B | 119.2 |
C22A—C21A—H21A | 120.0 | C22B—C21B—C20B | 118.70 (19) |
C23A—C22A—C21A | 121.0 (3) | C22B—C21B—H21B | 120.7 |
C23A—C22A—H22A | 119.5 | C20B—C21B—H21B | 120.7 |
C21A—C22A—H22A | 119.5 | C25B—C20B—C21B | 120.18 (15) |
C22A—C23A—C24A | 119.4 (3) | C25B—C20B—N11B | 117.8 (2) |
C22A—C23A—H23A | 120.3 | C21B—C20B—N11B | 121.92 (11) |
C24A—C23A—H23A | 120.3 | C51—O51—H51 | 109.5 |
C23A—C24A—C25A | 120.1 (3) | O51—C51—H51A | 109.5 |
C23A—C24A—H24A | 119.9 | O51—C51—H51B | 109.5 |
C25A—C24A—H24A | 119.9 | H51A—C51—H51B | 109.5 |
C20A—C25A—C24A | 120.2 (3) | O51—C51—H51C | 109.5 |
C20A—C25A—H25A | 119.9 | H51A—C51—H51C | 109.5 |
C24A—C25A—H25A | 119.9 | H51B—C51—H51C | 109.5 |
C2B—N1B—C6B | 116.7 (2) | C52—O52—H52 | 109.5 |
N1B—C2B—C3B | 123.5 (2) | O52—C52—H52A | 109.5 |
N1B—C2B—N7B | 113.1 (2) | O52—C52—H52B | 109.5 |
C3B—C2B—N7B | 123.4 (3) | H52A—C52—H52B | 109.5 |
C2B—C3B—C4B | 117.7 (3) | O52—C52—H52C | 109.5 |
C2B—C3B—H3B | 121.2 | H52A—C52—H52C | 109.5 |
C4B—C3B—H3B | 121.2 | H52B—C52—H52C | 109.5 |
C6A—N1A—C2A—C3A | −1.5 (4) | C6B—N1B—C2B—C3B | 0.1 (4) |
C6A—N1A—C2A—N7A | 178.9 (2) | C6B—N1B—C2B—N7B | −178.8 (2) |
N1A—C2A—C3A—C4A | 1.4 (4) | N1B—C2B—C3B—C4B | 0.2 (4) |
N7A—C2A—C3A—C4A | −179.1 (2) | N7B—C2B—C3B—C4B | 179.0 (3) |
C2A—C3A—C4A—C5A | −0.1 (4) | C2B—C3B—C4B—C5B | 0.0 (5) |
C3A—C4A—C5A—C6A | −0.9 (5) | C3B—C4B—C5B—C6B | −0.4 (5) |
C2A—N1A—C6A—C5A | 0.4 (5) | C2B—N1B—C6B—C5B | −0.5 (5) |
C4A—C5A—C6A—N1A | 0.8 (5) | C4B—C5B—C6B—N1B | 0.7 (5) |
N1A—C2A—N7A—C8A | −169.3 (2) | N1B—C2B—N7B—C8B | −170.1 (2) |
C3A—C2A—N7A—C8A | 11.1 (4) | C3B—C2B—N7B—C8B | 11.0 (4) |
C2A—N7A—C8A—O9A | −0.2 (4) | C2B—N7B—C8B—O9B | 1.5 (4) |
C2A—N7A—C8A—C10A | −179.8 (2) | C2B—N7B—C8B—C10B | −179.3 (2) |
O9A—C8A—C10A—N12A | 61.7 (3) | O9B—C8B—C10B—N12B | −57.1 (3) |
N7A—C8A—C10A—N12A | −118.6 (2) | N7B—C8B—C10B—N12B | 123.6 (2) |
O9A—C8A—C10A—N11A | −115.0 (3) | O9B—C8B—C10B—N11B | 121.4 (3) |
N7A—C8A—C10A—N11A | 64.7 (3) | N7B—C8B—C10B—N11B | −57.8 (3) |
N12A—C10A—N11A—C20A | −166.1 (2) | N12B—C10B—N11B—C20B | 159.7 (2) |
C8A—C10A—N11A—C20A | 10.6 (4) | C8B—C10B—N11B—C20B | −18.9 (4) |
N11A—C10A—N12A—O13A | 2.6 (3) | N11B—C10B—N12B—O13B | −4.1 (3) |
C8A—C10A—N12A—O13A | −174.2 (2) | C8B—C10B—N12B—O13B | 174.5 (2) |
N11A—C10A—N12A—C14A | −169.2 (2) | N11B—C10B—N12B—C14B | 171.1 (2) |
C8A—C10A—N12A—C14A | 13.9 (3) | C8B—C10B—N12B—C14B | −10.3 (4) |
C10A—N12A—C14A—C19A | 51.8 (3) | C10B—N12B—C14B—C19B | −56.8 (4) |
O13A—N12A—C14A—C19A | −120.2 (3) | O13B—N12B—C14B—C19B | 118.6 (3) |
C10A—N12A—C14A—C15A | −131.3 (3) | C10B—N12B—C14B—C15B | 126.2 (3) |
O13A—N12A—C14A—C15A | 56.6 (3) | O13B—N12B—C14B—C15B | −58.4 (3) |
C19A—C14A—C15A—C16A | −2.0 (4) | C19B—C14B—C15B—C16B | 1.6 (4) |
N12A—C14A—C15A—C16A | −178.8 (2) | N12B—C14B—C15B—C16B | 178.6 (2) |
C14A—C15A—C16A—C17A | 0.3 (4) | C14B—C15B—C16B—C17B | −1.4 (4) |
C15A—C16A—C17A—C18A | 1.2 (5) | C15B—C16B—C17B—C18B | 0.2 (5) |
C16A—C17A—C18A—C19A | −1.0 (5) | C16B—C17B—C18B—C19B | 0.7 (5) |
C15A—C14A—C19A—C18A | 2.2 (4) | C15B—C14B—C19B—C18B | −0.7 (4) |
N12A—C14A—C19A—C18A | 179.0 (3) | N12B—C14B—C19B—C18B | −177.6 (3) |
C17A—C18A—C19A—C14A | −0.7 (5) | C17B—C18B—C19B—C14B | −0.5 (5) |
C10A—N11A—C20A—C21A | 35.0 (4) | C20B—C25B—C24B—C23B | 2.7 (4) |
C10A—N11A—C20A—C25A | −147.9 (2) | C25B—C24B—C23B—C22B | −1.4 (5) |
C25A—C20A—C21A—C22A | −0.3 (4) | C24B—C23B—C22B—C21B | −0.8 (5) |
N11A—C20A—C21A—C22A | 176.7 (2) | C23B—C22B—C21B—C20B | 1.6 (4) |
C20A—C21A—C22A—C23A | −1.7 (5) | C24B—C25B—C20B—C21B | −1.8 (3) |
C21A—C22A—C23A—C24A | 1.7 (5) | C24B—C25B—C20B—N11B | 174.1 (2) |
C22A—C23A—C24A—C25A | 0.2 (5) | C22B—C21B—C20B—C25B | −0.3 (2) |
C21A—C20A—C25A—C24A | 2.3 (4) | C22B—C21B—C20B—N11B | −176.0 (3) |
N11A—C20A—C25A—C24A | −174.9 (2) | C10B—N11B—C20B—C25B | 152.2 (2) |
C23A—C24A—C25A—C20A | −2.3 (4) | C10B—N11B—C20B—C21B | −32.0 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N7A—H7A···O13B | 0.86 | 1.94 | 2.730 (3) | 152 |
N11A—H11A···N1Bi | 0.86 | 2.30 | 3.095 (3) | 153 |
N11A—H11A···O13A | 0.86 | 2.25 | 2.603 (3) | 105 |
N7B—H7B···O13Aii | 0.86 | 1.90 | 2.724 (3) | 160 |
N11B—H11B···N1A | 0.86 | 2.32 | 3.056 (3) | 144 |
N11B—H11B···O13B | 0.86 | 2.28 | 2.604 (3) | 102 |
O51—H51···O13B | 0.82 | 1.95 | 2.770 (3) | 179 |
Symmetry codes: (i) x, y+1, z; (ii) x, y−1, z. |
Experimental details
Crystal data | |
Chemical formula | C19H16N4O2·0.425CH4O |
Mr | 345.98 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 293 |
a, b, c (Å) | 18.7604 (3), 9.4701 (2), 21.2839 (5) |
β (°) | 104.375 (1) |
V (Å3) | 3662.97 (13) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.11 × 0.09 × 0.02 |
Data collection | |
Diffractometer | Nonius KappaCCD diffractometer |
Absorption correction | Multi-scan (DENZO and SCALEPACK; Otwinowski & Minor, 1997) |
Tmin, Tmax | 0.991, 0.998 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 12501, 6668, 3520 |
Rint | 0.065 |
(sin θ/λ)max (Å−1) | 0.602 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.067, 0.156, 1.03 |
No. of reflections | 6668 |
No. of parameters | 474 |
No. of restraints | 548 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.28, −0.14 |
Computer programs: COLLECT (Nonius, 2000), SCALEPACK (Otwinowski & Minor, 1997), DENZO (Otwinowski & Minor, 1997) and SCALEPACK, SIR92 (Altomare et al., 1994), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006).
D—H···A | D—H | H···A | D···A | D—H···A |
N7A—H7A···O13B | 0.86 | 1.94 | 2.730 (3) | 152 |
N11A—H11A···N1Bi | 0.86 | 2.30 | 3.095 (3) | 153 |
N11A—H11A···O13A | 0.86 | 2.25 | 2.603 (3) | 105 |
N7B—H7B···O13Aii | 0.86 | 1.90 | 2.724 (3) | 160 |
N11B—H11B···N1A | 0.86 | 2.32 | 3.056 (3) | 144 |
N11B—H11B···O13B | 0.86 | 2.28 | 2.604 (3) | 102 |
O51—H51···O13B | 0.82 | 1.95 | 2.770 (3) | 179 |
Symmetry codes: (i) x, y+1, z; (ii) x, y−1, z. |
Acknowledgements
The authors thank the Joint X-ray Laboratory, Faculty of Chemistry, and SLAFiBS, Jagiellonian University, for making available the Nonius KappaCCD diffractometer.
References
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Nitrones have attracted attention of organic chemists as nitrone N+–O- moiety can be treated as an active equivalent of C=O group (Boruah et al. 2003, Freisleben et al. 2002, Saito et al. 2001, Gravestock et al. 2000, Torssell 1988, Floyd 2006). However, only several examples of nitrones bearing a vicinal NH group have been reported so far (Janzen et al. 1997, Clement et al. 1987, Baranowska et al. 1977, Aurich et al. 1976, Rosenberg et al. 1972). As reported, the compounds could be derived from nitriles (Branco et al. 1992), imidoformic acid esters or α-chloroimines (Aurich 1968), hydroxylamines and methylene amines (Aurich 1968, Guimanini et al. 1999), secondary amines (Szantay et al. 1965), and nitroso compounds, from hydroxyguanidines (Southan et al. 1998) or from other nitrones (Warshaw et al.1989). We have succeeded in developing a straightforward way of obtaining nitrones with a vicinal NH group in excellent yields, starting from easily available pyridilides of 3-oxobutanoic acid and nitrosobenzene. The crystal structure analysis of (2Z)-2-anilino-2-[oxido(phenyl)imino]-N-pyridin-2-ylacetamide was performed in order to determine the nature of the interactions between the N+–O- moiety of the title nitrone with the vicinal NH group; this should help us to understand the compound's versatile reactivity towards various diamines. The symmetrically independent part of the unit cell is composed of two 2-anilino-2-[oxido(phenyl)imino]-N-pyridin-2-ylacetamide molecules and a 0.85 methanol molecule disordered between two positions with partial occupancy parameters of 0.586 (7) and 0.264 (7) for O51A—C51A and O51B—C51B, respectively. The conformation of the two symetrically independent nitrone molecules is shown in Figs. 1a and 1 b. No appreciable differences can be observed between the bond lengths and angles of the independent nitrone molecules and they are comparable with the values reported in the literature (Allen et al. 1987). The planarity of the C–C=N+→(O-) part with Z configuration, in respect of N12–C10 double bond, observed for both symmetrically independent molecules is the most interesting feature of the investigated molecules, from the geometrical point of view. The O13—N12—C10—N11 and O13—N12—C10—C8 torsion angles are 2.6° and -174.3°, respectively for molecule A and -4.1° and 174.4°, respectively for molecule B. Significant torsion angles observed for nitrone molecules A and B are compared in Table 1. A l l aryl rings are twisted against each other: 〈 (C14···C19/N1···C6) = 68.0 (1)° for A and 53.8 (1)° for B; 〈 (C20···C25/N1···C6) = 75.5 (1)° for A and 66.4 (1)° for B. The crystal packing (Fig. 2) is controlled by N—H···O, N—H···N and O—H···O hydrogen bonds and weak van der Waals interactions (Table 2). The two N atoms (N7 and N11) in each molecule of the title compound are involved in the hydrogen bonds as donors forming two intra- and one intermolecular hydrogen bonds (Table 2). The intermolecular N11—H11···N1 interactions are relatively weak, with donor–acceptor distances of 3.095 (3) Å and 3.056 (3) Å due to simultaneous donor participation in intramolecular N11—H11···O13 interactions.