organic compounds
(11R,13R)-13-(Tetralin-1-ylamino)-4,5-epoxy-11,13-dihydrocostunolide
aDepartment of Pharmaceutical Sciences, College of Pharmacy, University of Kentucky, Lexington, KY 40536, USA, and bDepartment of Chemistry, University of Kentucky, Lexington, KY 40506, USA
*Correspondence e-mail: pcrooks@email.uky.edu
The title compound [systematic name: (12R)-4,8-dimethyl-12-[(1′R)-1′,2′,3′,4′-tetrahydro-1′-naphthyl)aminomethyl]-3,14-dioxatricyclo[9.3.0.02,4]tetradec-7-en-13-one}, C25H33NO3, was formed from the reaction of (1R)-1-aminotetralin with parthenolide in methanolic solution. X-ray analysis determined that the configuration of the new chiral center in the title compound was R.
Related literature
For related literature, see: Allen et al. (1987); Crooks et al. (2005); Desiraju & Steiner (1999); Nasim et al. (2007a,b).
Experimental
Crystal data
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Data collection: APEX2 (Bruker Nonius, 2004); cell APEX2; data reduction: APEX2; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XP in SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97 and local procedures.
Supporting information
10.1107/S1600536808003322/hg2376sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808003322/hg2376Isup2.hkl
The title compound was prepared utilizing the general procedure reported earlier (Nasim et al., 2007a, 2007b).
H atoms were found in difference Fourier maps and subsequently placed in idealized positions with constrained C—H distances of 0.95Å (Csp2—H), 1.00Å (R3CH), 0.99Å (R2CH2), 0.98Å (RCH3) except for the NH hydrogen coordinates, which were refined. Uiso(H) values were set to 1.2Ueq or 1.5Ueq (RCH3 only) of the attached atom.
Data collection: APEX2 (Bruker Nonius, 2004); cell
APEX2 (Bruker Nonius, 2004); data reduction: APEX2 (Bruker Nonius, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XP in SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and local procedures.C25H33NO3 | F(000) = 856 |
Mr = 395.52 | Dx = 1.249 Mg m−3 |
Orthorhombic, P212121 | Cu Kα radiation, λ = 1.54178 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 9023 reflections |
a = 8.4952 (13) Å | θ = 4.1–68.6° |
b = 13.1852 (19) Å | µ = 0.64 mm−1 |
c = 18.771 (3) Å | T = 90 K |
V = 2102.6 (6) Å3 | Cut block, colourless |
Z = 4 | 0.30 × 0.28 × 0.18 mm |
Bruker X8 Proteum diffractometer | 3849 independent reflections |
Radiation source: fine-focus rotating anode | 3813 reflections with I > 2σ(I) |
Helios multilayer optics monochromator | Rint = 0.033 |
Detector resolution: 18 pixels mm-1 | θmax = 68.6°, θmin = 4.1° |
ω and ϕ scans | h = −10→10 |
Absorption correction: multi-scan (SADABS in APEX2; Bruker Nonius, 2004) | k = −15→15 |
Tmin = 0.782, Tmax = 0.894 | l = −22→22 |
26461 measured reflections |
Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
R[F2 > 2σ(F2)] = 0.043 | w = 1/[σ2(Fo2) + (0.0627P)2 + 0.7419P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.110 | (Δ/σ)max < 0.001 |
S = 1.06 | Δρmax = 0.34 e Å−3 |
3849 reflections | Δρmin = −0.22 e Å−3 |
269 parameters | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
0 restraints | Extinction coefficient: 0.0147 (7) |
Primary atom site location: structure-invariant direct methods | Absolute structure: Flack (1983) |
Secondary atom site location: difference Fourier map | Absolute structure parameter: 0.06 (5) |
C25H33NO3 | V = 2102.6 (6) Å3 |
Mr = 395.52 | Z = 4 |
Orthorhombic, P212121 | Cu Kα radiation |
a = 8.4952 (13) Å | µ = 0.64 mm−1 |
b = 13.1852 (19) Å | T = 90 K |
c = 18.771 (3) Å | 0.30 × 0.28 × 0.18 mm |
Bruker X8 Proteum diffractometer | 3849 independent reflections |
Absorption correction: multi-scan (SADABS in APEX2; Bruker Nonius, 2004) | 3813 reflections with I > 2σ(I) |
Tmin = 0.782, Tmax = 0.894 | Rint = 0.033 |
26461 measured reflections |
R[F2 > 2σ(F2)] = 0.043 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.110 | Δρmax = 0.34 e Å−3 |
S = 1.06 | Δρmin = −0.22 e Å−3 |
3849 reflections | Absolute structure: Flack (1983) |
269 parameters | Absolute structure parameter: 0.06 (5) |
0 restraints |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
N1 | 0.5361 (2) | 0.68044 (12) | 0.44880 (10) | 0.0365 (4) | |
H1N | 0.597 (3) | 0.6648 (19) | 0.4042 (13) | 0.044* | |
O1 | 0.79418 (15) | 0.18237 (9) | 0.50676 (7) | 0.0315 (3) | |
O2 | 0.76245 (16) | 0.38600 (10) | 0.45744 (7) | 0.0363 (3) | |
O3 | 0.7062 (2) | 0.50746 (12) | 0.38018 (8) | 0.0508 (4) | |
C1 | 0.5083 (2) | 0.23023 (14) | 0.67140 (10) | 0.0317 (4) | |
H1 | 0.4217 | 0.2389 | 0.6400 | 0.038* | |
C2 | 0.5720 (3) | 0.12589 (15) | 0.67700 (11) | 0.0389 (5) | |
H2A | 0.4851 | 0.0776 | 0.6862 | 0.047* | |
H2B | 0.6468 | 0.1220 | 0.7173 | 0.047* | |
C3 | 0.6562 (3) | 0.09719 (14) | 0.60747 (11) | 0.0355 (4) | |
H3A | 0.7194 | 0.0351 | 0.6152 | 0.043* | |
H3B | 0.5770 | 0.0824 | 0.5702 | 0.043* | |
C4 | 0.7615 (2) | 0.18070 (13) | 0.58256 (9) | 0.0286 (4) | |
C5 | 0.6906 (2) | 0.25699 (13) | 0.53651 (9) | 0.0259 (4) | |
H5 | 0.5768 | 0.2449 | 0.5260 | 0.031* | |
C6 | 0.7381 (2) | 0.36493 (13) | 0.53249 (10) | 0.0275 (4) | |
H6 | 0.8375 | 0.3764 | 0.5598 | 0.033* | |
C7 | 0.6115 (2) | 0.43955 (12) | 0.55609 (10) | 0.0264 (4) | |
H7 | 0.5066 | 0.4092 | 0.5449 | 0.032* | |
C8 | 0.6106 (2) | 0.47212 (14) | 0.63395 (10) | 0.0339 (4) | |
H8A | 0.5834 | 0.5450 | 0.6361 | 0.041* | |
H8B | 0.7186 | 0.4646 | 0.6531 | 0.041* | |
C9 | 0.4981 (3) | 0.41421 (15) | 0.68229 (10) | 0.0358 (4) | |
H9A | 0.4775 | 0.4555 | 0.7254 | 0.043* | |
H9B | 0.3967 | 0.4052 | 0.6571 | 0.043* | |
C10 | 0.5572 (2) | 0.31281 (15) | 0.70481 (10) | 0.0319 (4) | |
C11 | 0.6388 (2) | 0.52750 (13) | 0.50509 (10) | 0.0316 (4) | |
H11 | 0.7222 | 0.5723 | 0.5257 | 0.038* | |
C12 | 0.7038 (3) | 0.47736 (15) | 0.44038 (11) | 0.0368 (4) | |
C13 | 0.4960 (2) | 0.59112 (14) | 0.48985 (11) | 0.0341 (4) | |
H13A | 0.4181 | 0.5502 | 0.4631 | 0.041* | |
H13B | 0.4470 | 0.6121 | 0.5354 | 0.041* | |
C14 | 0.6724 (3) | 0.31561 (18) | 0.76475 (11) | 0.0470 (5) | |
H14A | 0.7063 | 0.2464 | 0.7760 | 0.070* | |
H14B | 0.6226 | 0.3460 | 0.8067 | 0.070* | |
H14C | 0.7639 | 0.3563 | 0.7509 | 0.070* | |
C15 | 0.9019 (2) | 0.20263 (16) | 0.62710 (11) | 0.0378 (5) | |
H15A | 0.9661 | 0.1412 | 0.6315 | 0.057* | |
H15B | 0.8679 | 0.2247 | 0.6745 | 0.057* | |
H15C | 0.9642 | 0.2564 | 0.6047 | 0.057* | |
C2' | 0.4037 (2) | 0.74860 (14) | 0.43624 (11) | 0.0334 (4) | |
H2' | 0.3648 | 0.7720 | 0.4838 | 0.040* | |
C3' | 0.4645 (2) | 0.84025 (14) | 0.39714 (10) | 0.0299 (4) | |
C4' | 0.5552 (2) | 0.90996 (15) | 0.43477 (11) | 0.0352 (4) | |
H4' | 0.5774 | 0.8975 | 0.4836 | 0.042* | |
C5' | 0.6133 (2) | 0.99567 (15) | 0.40354 (11) | 0.0359 (4) | |
H5' | 0.6759 | 1.0419 | 0.4301 | 0.043* | |
C6' | 0.5793 (2) | 1.01419 (15) | 0.33243 (11) | 0.0336 (4) | |
H6' | 0.6179 | 1.0738 | 0.3100 | 0.040* | |
C7' | 0.4899 (2) | 0.94620 (15) | 0.29450 (10) | 0.0329 (4) | |
H7' | 0.4676 | 0.9593 | 0.2458 | 0.040* | |
C8' | 0.4317 (2) | 0.85882 (14) | 0.32608 (10) | 0.0306 (4) | |
C9' | 0.3252 (2) | 0.79086 (16) | 0.28324 (10) | 0.0365 (4) | |
H9'1 | 0.3710 | 0.7807 | 0.2353 | 0.044* | |
H9'2 | 0.2216 | 0.8242 | 0.2773 | 0.044* | |
C10' | 0.3021 (3) | 0.68777 (16) | 0.31904 (11) | 0.0398 (5) | |
H10A | 0.2149 | 0.6508 | 0.2956 | 0.048* | |
H10B | 0.3991 | 0.6468 | 0.3142 | 0.048* | |
C11' | 0.2645 (2) | 0.70309 (14) | 0.39664 (10) | 0.0346 (4) | |
H11A | 0.2364 | 0.6371 | 0.4184 | 0.042* | |
H11B | 0.1725 | 0.7488 | 0.4012 | 0.042* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0365 (9) | 0.0270 (8) | 0.0461 (9) | 0.0004 (7) | −0.0010 (7) | 0.0058 (7) |
O1 | 0.0324 (6) | 0.0278 (6) | 0.0343 (6) | 0.0068 (6) | 0.0029 (5) | −0.0040 (5) |
O2 | 0.0362 (7) | 0.0304 (7) | 0.0421 (7) | 0.0045 (6) | 0.0123 (6) | 0.0074 (6) |
O3 | 0.0659 (11) | 0.0398 (8) | 0.0465 (9) | 0.0060 (8) | 0.0143 (8) | 0.0147 (7) |
C1 | 0.0326 (9) | 0.0326 (9) | 0.0299 (8) | −0.0051 (8) | 0.0050 (7) | 0.0005 (7) |
C2 | 0.0499 (12) | 0.0284 (9) | 0.0383 (10) | −0.0087 (9) | 0.0034 (9) | 0.0038 (8) |
C3 | 0.0433 (11) | 0.0207 (8) | 0.0424 (11) | 0.0012 (8) | −0.0013 (9) | 0.0006 (8) |
C4 | 0.0293 (9) | 0.0231 (8) | 0.0333 (9) | 0.0058 (7) | 0.0009 (7) | −0.0009 (7) |
C5 | 0.0229 (8) | 0.0237 (8) | 0.0311 (8) | 0.0018 (7) | 0.0010 (7) | −0.0026 (7) |
C6 | 0.0226 (8) | 0.0251 (8) | 0.0347 (9) | −0.0021 (7) | −0.0016 (7) | 0.0040 (7) |
C7 | 0.0246 (8) | 0.0195 (8) | 0.0350 (9) | −0.0003 (7) | −0.0022 (7) | 0.0006 (7) |
C8 | 0.0423 (11) | 0.0220 (8) | 0.0376 (10) | −0.0012 (8) | −0.0042 (8) | −0.0033 (8) |
C9 | 0.0395 (11) | 0.0324 (10) | 0.0355 (10) | 0.0075 (9) | 0.0057 (8) | −0.0070 (8) |
C10 | 0.0338 (10) | 0.0320 (9) | 0.0299 (9) | 0.0001 (8) | 0.0051 (8) | −0.0013 (7) |
C11 | 0.0308 (9) | 0.0213 (8) | 0.0427 (10) | −0.0030 (7) | −0.0009 (8) | 0.0039 (8) |
C12 | 0.0364 (10) | 0.0291 (9) | 0.0448 (11) | −0.0018 (8) | 0.0051 (8) | 0.0089 (8) |
C13 | 0.0346 (10) | 0.0239 (8) | 0.0438 (10) | 0.0001 (8) | −0.0017 (8) | 0.0043 (8) |
C14 | 0.0593 (14) | 0.0448 (12) | 0.0369 (10) | −0.0012 (11) | −0.0121 (10) | −0.0034 (9) |
C15 | 0.0315 (10) | 0.0373 (10) | 0.0444 (11) | 0.0078 (8) | −0.0088 (8) | 0.0016 (8) |
C2' | 0.0320 (10) | 0.0286 (9) | 0.0395 (10) | 0.0020 (8) | −0.0002 (8) | 0.0009 (8) |
C3' | 0.0257 (8) | 0.0277 (9) | 0.0364 (9) | 0.0022 (7) | −0.0014 (8) | 0.0005 (7) |
C4' | 0.0334 (10) | 0.0326 (10) | 0.0395 (10) | −0.0022 (8) | −0.0060 (8) | 0.0041 (8) |
C5' | 0.0299 (9) | 0.0312 (9) | 0.0466 (11) | −0.0040 (8) | −0.0008 (8) | 0.0013 (8) |
C6' | 0.0263 (9) | 0.0292 (9) | 0.0454 (10) | 0.0008 (8) | 0.0033 (8) | 0.0070 (8) |
C7' | 0.0300 (9) | 0.0350 (10) | 0.0338 (9) | 0.0037 (8) | 0.0022 (8) | 0.0041 (8) |
C8' | 0.0257 (9) | 0.0290 (9) | 0.0372 (10) | 0.0047 (7) | 0.0033 (8) | −0.0031 (8) |
C9' | 0.0335 (10) | 0.0414 (11) | 0.0346 (9) | −0.0054 (9) | 0.0026 (8) | −0.0099 (8) |
C10' | 0.0389 (11) | 0.0366 (10) | 0.0439 (11) | −0.0079 (9) | 0.0013 (9) | −0.0101 (9) |
C11' | 0.0334 (9) | 0.0290 (9) | 0.0415 (10) | −0.0010 (8) | 0.0005 (8) | 0.0021 (8) |
N1—C13 | 1.448 (2) | C11—C12 | 1.489 (3) |
N1—C2' | 1.459 (2) | C11—C13 | 1.503 (3) |
N1—H1N | 1.01 (3) | C11—H11 | 1.0000 |
O1—C5 | 1.433 (2) | C13—H13A | 0.9900 |
O1—C4 | 1.450 (2) | C13—H13B | 0.9900 |
O2—C12 | 1.342 (2) | C14—H14A | 0.9800 |
O2—C6 | 1.451 (2) | C14—H14B | 0.9800 |
O3—C12 | 1.198 (2) | C14—H14C | 0.9800 |
C1—C10 | 1.324 (3) | C15—H15A | 0.9800 |
C1—C2 | 1.482 (3) | C15—H15B | 0.9800 |
C1—H1 | 0.9500 | C15—H15C | 0.9800 |
C2—C3 | 1.536 (3) | C2'—C3' | 1.505 (3) |
C2—H2A | 0.9900 | C2'—C11' | 1.521 (3) |
C2—H2B | 0.9900 | C2'—H2' | 1.0000 |
C3—C4 | 1.494 (3) | C3'—C8' | 1.384 (3) |
C3—H3A | 0.9900 | C3'—C4' | 1.392 (3) |
C3—H3B | 0.9900 | C4'—C5' | 1.365 (3) |
C4—C5 | 1.457 (2) | C4'—H4' | 0.9500 |
C4—C15 | 1.485 (3) | C5'—C6' | 1.387 (3) |
C5—C6 | 1.481 (2) | C5'—H5' | 0.9500 |
C5—H5 | 1.0000 | C6'—C7' | 1.374 (3) |
C6—C7 | 1.523 (2) | C6'—H6' | 0.9500 |
C6—H6 | 1.0000 | C7'—C8' | 1.387 (3) |
C7—C11 | 1.522 (2) | C7'—H7' | 0.9500 |
C7—C8 | 1.523 (3) | C8'—C9' | 1.506 (3) |
C7—H7 | 1.0000 | C9'—C10' | 1.529 (3) |
C8—C9 | 1.523 (3) | C9'—H9'1 | 0.9900 |
C8—H8A | 0.9900 | C9'—H9'2 | 0.9900 |
C8—H8B | 0.9900 | C10'—C11' | 1.505 (3) |
C9—C10 | 1.489 (3) | C10'—H10A | 0.9900 |
C9—H9A | 0.9900 | C10'—H10B | 0.9900 |
C9—H9B | 0.9900 | C11'—H11A | 0.9900 |
C10—C14 | 1.492 (3) | C11'—H11B | 0.9900 |
C13—N1—C2' | 113.94 (16) | C7—C11—H11 | 108.4 |
C13—N1—H1N | 113.4 (14) | O3—C12—O2 | 121.07 (19) |
C2'—N1—H1N | 113.0 (14) | O3—C12—C11 | 128.96 (19) |
C5—O1—C4 | 60.70 (11) | O2—C12—C11 | 109.95 (16) |
C12—O2—C6 | 110.53 (15) | N1—C13—C11 | 111.42 (16) |
C10—C1—C2 | 127.98 (19) | N1—C13—H13A | 109.3 |
C10—C1—H1 | 116.0 | C11—C13—H13A | 109.3 |
C2—C1—H1 | 116.0 | N1—C13—H13B | 109.3 |
C1—C2—C3 | 109.79 (16) | C11—C13—H13B | 109.3 |
C1—C2—H2A | 109.7 | H13A—C13—H13B | 108.0 |
C3—C2—H2A | 109.7 | C10—C14—H14A | 109.5 |
C1—C2—H2B | 109.7 | C10—C14—H14B | 109.5 |
C3—C2—H2B | 109.7 | H14A—C14—H14B | 109.5 |
H2A—C2—H2B | 108.2 | C10—C14—H14C | 109.5 |
C4—C3—C2 | 111.31 (15) | H14A—C14—H14C | 109.5 |
C4—C3—H3A | 109.4 | H14B—C14—H14C | 109.5 |
C2—C3—H3A | 109.4 | C4—C15—H15A | 109.5 |
C4—C3—H3B | 109.4 | C4—C15—H15B | 109.5 |
C2—C3—H3B | 109.4 | H15A—C15—H15B | 109.5 |
H3A—C3—H3B | 108.0 | C4—C15—H15C | 109.5 |
O1—C4—C5 | 59.08 (11) | H15A—C15—H15C | 109.5 |
O1—C4—C15 | 113.32 (15) | H15B—C15—H15C | 109.5 |
C5—C4—C15 | 122.12 (16) | N1—C2'—C3' | 108.01 (15) |
O1—C4—C3 | 115.67 (15) | N1—C2'—C11' | 115.82 (16) |
C5—C4—C3 | 116.57 (16) | C3'—C2'—C11' | 110.19 (16) |
C15—C4—C3 | 116.63 (17) | N1—C2'—H2' | 107.5 |
O1—C5—C4 | 60.22 (11) | C3'—C2'—H2' | 107.5 |
O1—C5—C6 | 118.22 (15) | C11'—C2'—H2' | 107.5 |
C4—C5—C6 | 125.54 (16) | C8'—C3'—C4' | 118.90 (17) |
O1—C5—H5 | 114.0 | C8'—C3'—C2' | 122.89 (17) |
C4—C5—H5 | 114.0 | C4'—C3'—C2' | 118.20 (17) |
C6—C5—H5 | 114.0 | C5'—C4'—C3' | 121.92 (19) |
O2—C6—C5 | 105.81 (15) | C5'—C4'—H4' | 119.0 |
O2—C6—C7 | 105.04 (14) | C3'—C4'—H4' | 119.0 |
C5—C6—C7 | 114.46 (14) | C4'—C5'—C6' | 118.93 (19) |
O2—C6—H6 | 110.4 | C4'—C5'—H5' | 120.5 |
C5—C6—H6 | 110.4 | C6'—C5'—H5' | 120.5 |
C7—C6—H6 | 110.4 | C7'—C6'—C5' | 119.91 (18) |
C11—C7—C6 | 101.64 (14) | C7'—C6'—H6' | 120.0 |
C11—C7—C8 | 112.93 (15) | C5'—C6'—H6' | 120.0 |
C6—C7—C8 | 117.69 (15) | C6'—C7'—C8' | 121.19 (18) |
C11—C7—H7 | 108.0 | C6'—C7'—H7' | 119.4 |
C6—C7—H7 | 108.0 | C8'—C7'—H7' | 119.4 |
C8—C7—H7 | 108.0 | C3'—C8'—C7' | 119.15 (18) |
C7—C8—C9 | 115.68 (16) | C3'—C8'—C9' | 122.00 (17) |
C7—C8—H8A | 108.4 | C7'—C8'—C9' | 118.71 (17) |
C9—C8—H8A | 108.4 | C8'—C9'—C10' | 111.81 (17) |
C7—C8—H8B | 108.4 | C8'—C9'—H9'1 | 109.3 |
C9—C8—H8B | 108.4 | C10'—C9'—H9'1 | 109.3 |
H8A—C8—H8B | 107.4 | C8'—C9'—H9'2 | 109.3 |
C10—C9—C8 | 114.03 (16) | C10'—C9'—H9'2 | 109.3 |
C10—C9—H9A | 108.7 | H9'1—C9'—H9'2 | 107.9 |
C8—C9—H9A | 108.7 | C11'—C10'—C9' | 109.47 (16) |
C10—C9—H9B | 108.7 | C11'—C10'—H10A | 109.8 |
C8—C9—H9B | 108.7 | C9'—C10'—H10A | 109.8 |
H9A—C9—H9B | 107.6 | C11'—C10'—H10B | 109.8 |
C1—C10—C9 | 119.88 (18) | C9'—C10'—H10B | 109.8 |
C1—C10—C14 | 125.72 (19) | H10A—C10'—H10B | 108.2 |
C9—C10—C14 | 114.40 (17) | C10'—C11'—C2' | 111.16 (17) |
C12—C11—C13 | 113.08 (17) | C10'—C11'—H11A | 109.4 |
C12—C11—C7 | 103.38 (14) | C2'—C11'—H11A | 109.4 |
C13—C11—C7 | 114.96 (16) | C10'—C11'—H11B | 109.4 |
C12—C11—H11 | 108.4 | C2'—C11'—H11B | 109.4 |
C13—C11—H11 | 108.4 | H11A—C11'—H11B | 108.0 |
C10—C1—C2—C3 | −109.7 (2) | C8—C7—C11—C13 | −80.1 (2) |
C1—C2—C3—C4 | 45.8 (2) | C6—O2—C12—O3 | −176.92 (19) |
C5—O1—C4—C15 | −114.62 (18) | C6—O2—C12—C11 | 2.1 (2) |
C5—O1—C4—C3 | 106.90 (17) | C13—C11—C12—O3 | 33.4 (3) |
C2—C3—C4—O1 | −155.15 (16) | C7—C11—C12—O3 | 158.4 (2) |
C2—C3—C4—C5 | −88.5 (2) | C13—C11—C12—O2 | −145.45 (17) |
C2—C3—C4—C15 | 67.8 (2) | C7—C11—C12—O2 | −20.5 (2) |
C4—O1—C5—C6 | 116.94 (18) | C2'—N1—C13—C11 | −176.27 (16) |
C15—C4—C5—O1 | 99.73 (18) | C12—C11—C13—N1 | −69.3 (2) |
C3—C4—C5—O1 | −105.36 (17) | C7—C11—C13—N1 | 172.34 (15) |
O1—C4—C5—C6 | −105.11 (19) | C13—N1—C2'—C3' | 176.64 (16) |
C15—C4—C5—C6 | −5.4 (3) | C13—N1—C2'—C11' | −59.3 (2) |
C3—C4—C5—C6 | 149.53 (17) | N1—C2'—C3'—C8' | 108.4 (2) |
C12—O2—C6—C5 | 138.80 (16) | C11'—C2'—C3'—C8' | −19.0 (2) |
C12—O2—C6—C7 | 17.36 (19) | N1—C2'—C3'—C4' | −72.8 (2) |
O1—C5—C6—O2 | 56.9 (2) | C11'—C2'—C3'—C4' | 159.81 (17) |
C4—C5—C6—O2 | 128.86 (18) | C8'—C3'—C4'—C5' | −0.3 (3) |
O1—C5—C6—C7 | 172.03 (14) | C2'—C3'—C4'—C5' | −179.21 (18) |
C4—C5—C6—C7 | −115.99 (19) | C3'—C4'—C5'—C6' | 0.7 (3) |
O2—C6—C7—C11 | −28.52 (17) | C4'—C5'—C6'—C7' | −0.6 (3) |
C5—C6—C7—C11 | −144.12 (16) | C5'—C6'—C7'—C8' | 0.3 (3) |
O2—C6—C7—C8 | −152.39 (15) | C4'—C3'—C8'—C7' | −0.1 (3) |
C5—C6—C7—C8 | 92.0 (2) | C2'—C3'—C8'—C7' | 178.76 (17) |
C11—C7—C8—C9 | 145.45 (17) | C4'—C3'—C8'—C9' | −175.66 (18) |
C6—C7—C8—C9 | −96.5 (2) | C2'—C3'—C8'—C9' | 3.2 (3) |
C7—C8—C9—C10 | 78.9 (2) | C6'—C7'—C8'—C3' | 0.1 (3) |
C2—C1—C10—C9 | 168.58 (19) | C6'—C7'—C8'—C9' | 175.83 (18) |
C2—C1—C10—C14 | −10.4 (3) | C3'—C8'—C9'—C10' | −17.3 (3) |
C8—C9—C10—C1 | −99.0 (2) | C7'—C8'—C9'—C10' | 167.10 (17) |
C8—C9—C10—C14 | 80.1 (2) | C8'—C9'—C10'—C11' | 47.4 (2) |
C6—C7—C11—C12 | 29.12 (18) | C9'—C10'—C11'—C2' | −66.1 (2) |
C8—C7—C11—C12 | 156.16 (16) | N1—C2'—C11'—C10' | −72.9 (2) |
C6—C7—C11—C13 | 152.84 (16) | C3'—C2'—C11'—C10' | 50.1 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···O3 | 1.01 (3) | 2.32 (3) | 2.992 (2) | 123.5 (18) |
Experimental details
Crystal data | |
Chemical formula | C25H33NO3 |
Mr | 395.52 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 90 |
a, b, c (Å) | 8.4952 (13), 13.1852 (19), 18.771 (3) |
V (Å3) | 2102.6 (6) |
Z | 4 |
Radiation type | Cu Kα |
µ (mm−1) | 0.64 |
Crystal size (mm) | 0.30 × 0.28 × 0.18 |
Data collection | |
Diffractometer | Bruker X8 Proteum diffractometer |
Absorption correction | Multi-scan (SADABS in APEX2; Bruker Nonius, 2004) |
Tmin, Tmax | 0.782, 0.894 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 26461, 3849, 3813 |
Rint | 0.033 |
(sin θ/λ)max (Å−1) | 0.604 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.043, 0.110, 1.06 |
No. of reflections | 3849 |
No. of parameters | 269 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.34, −0.22 |
Absolute structure | Flack (1983) |
Absolute structure parameter | 0.06 (5) |
Computer programs: APEX2 (Bruker Nonius, 2004), SHELXS97 (Sheldrick, 2008), XP in SHELXTL (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008) and local procedures.
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···O3 | 1.01 (3) | 2.32 (3) | 2.992 (2) | 123.5 (18) |
Acknowledgements
Financial support from the Kentucky Lung Cancer Research Program is gratefully acknowledged.
References
Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19. CrossRef Web of Science Google Scholar
Bruker Nonius (2004). APEX2. Bruker Nonius AXS Inc., Madison, Wisconsin, USA. Google Scholar
Crooks, P. A., Jordan, C. T. & Wei, X. (2005). US Patent Appl. Publ. Cont.-in-Part of US Ser. No. 888, 274. Google Scholar
Desiraju, G. R. & Steiner, T. D. (1999). The Weak Hydrogen Bond in Structural Chemistry and Biology. p. 13. Oxford University Press. Google Scholar
Flack, H. D. (1983). Acta Cryst. A39, 876–881. CrossRef CAS Web of Science IUCr Journals Google Scholar
Nasim, S., Parkin, S. & Crooks, P. A. (2007a). Acta Cryst. E63, o3922. Web of Science CSD CrossRef IUCr Journals Google Scholar
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Due to the interesting biological activity of parthenolide, we have synthesized a series of amino analogs of parthenolide (Crooks et al., 2005). In order to confirm the configuration of the newly formed methine carbon at C-11 in these molecules, and to obtain more detailed information on the structural conformation of the molecule that may be of value in structure activity relationship studies, the X-ray structure determination of the title compound has been carried out and the results are presented below. The absolute stereochemistry of the newly formed methine at C-11 was found to be R, which is typical in structurally related C-11 aminoparthenolide analogs that result from the reaction of an secondary amino compound with parthenolide (Nasim et al., 2007a, 2007b). Bond distances and angles within the molecule were quite regular with normal bond lengths (Allen et al., 1987). A hydrogen bond is observed between N-1H and O3 of the carbonyl oxygen of the 5-membered lactone ring (Desiraju et al.,1999) (2.32 (3) A°, 2.99 (2) A°, 123.5 (18)°) (Table 1).