metal-organic compounds
Diaqua(2,6-dioxo-1,2,3,6-tetrahydropyrimidin-3-ide-4-carboxylato-κ2N3,O4)(1,10-phenanthroline-κ2N,N′)manganese(II)
aDepartment of Chemistry, Taishan University, 271021 Tai'an, Shandong, People's Republic of China, bShan Dong Institute of Supervision & Inspection of Product Quality, 250100 Ji'nan, Shandong, People's Republic of China, and cDepartment of Materials and Chemical Engineering, Taishan University, 271021 Tai'an, Shandong, People's Republic of China
*Correspondence e-mail: duanwenzeng@163.com
The title compound, [Mn(C5H2N2O4)(C12H8N2)(H2O)2], was synthesized by the reaction of manganese(II) acetate and orotic acid in the presence of 1,10-phenanthroline. The exhibits intermolecular N—H⋯O and O—H⋯O hydrogen bonds . The Mn coordination environment consists of an N3O3 donor set in an octahedral geometry.
Related literature
For biochemical processes, see: Mukhopadhyay et al., (2004); Ren et al., (2005). For bioinorganic and pharmaceutical studies, see: Lieberman et al., (1955). For coordination chemistry and other aspects, see: Darensbourg et al., (1998). For complexes of the orotate ligand, see: Hambley et al., (1995); Nepveu et al., (1995).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 2007); cell SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536808005230/om2206sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808005230/om2206Isup2.hkl
Orotic acid (0.0012 mol), 1, 10-phenanthroline (0.0012 mol) and Mn(CH3COO)2.2H2O (0.0012 mol, 0.294 g) in 120 ml of water were stirred at 373 K for 24 h; the pH of the solution was adjusted to 6 using a dilute aqueous solution of ammonia. After evaporation of the solution for two weeks, colorless block-like crystals were isolated by filtration. Analysis, calculated for C17H14N4O6Mn: C 48.01, H 3.32, N 13.17; found: C 48.00, H 3.30, N 13.16. Crystals suitable for single-crystal X-ray analysis were selected directly from the sample.
All H atoms were initially located in a difference Fourier map, but placed in idealized positions (C—H 0.93 Å, N—H 0.86 Å), with Uiso(H) = 1.2Ueq(C). The O—H bond lengths were constrained to 0.85Å and the isotropic thermal parameters of the H atoms bonded to water were refined.
Data collection: SMART (Bruker, 2007); cell
SMART (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).Fig. 1. The structure of the title compound, showing 30% probability displacement ellipsoids and the atom-numbering scheme. The H atoms are omitted. |
[Mn(C5H2N2O4)(C12H8N2)(H2O)2] | Z = 2 |
Mr = 425.26 | F(000) = 434 |
Triclinic, P1 | Dx = 1.678 Mg m−3 |
a = 8.3173 (2) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 8.9875 (2) Å | Cell parameters from 3161 reflections |
c = 11.9509 (3) Å | θ = 2.4–24.5° |
α = 78.278 (1)° | µ = 0.83 mm−1 |
β = 82.910 (1)° | T = 293 K |
γ = 74.744 (1)° | Block, colorless |
V = 841.58 (3) Å3 | 0.15 × 0.12 × 0.10 mm |
Bruker SMART diffractometer | 2950 independent reflections |
Radiation source: fine-focus sealed tube | 2539 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.027 |
ϕ and ω scans | θmax = 25.0°, θmin = 1.8° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −9→9 |
Tmin = 0.886, Tmax = 0.922 | k = −10→10 |
9718 measured reflections | l = −14→13 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.030 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.072 | H-atom parameters constrained |
S = 1.05 | w = 1/[σ2(Fo2) + (0.0269P)2 + 0.4894P] where P = (Fo2 + 2Fc2)/3 |
2950 reflections | (Δ/σ)max = 0.001 |
257 parameters | Δρmax = 0.22 e Å−3 |
0 restraints | Δρmin = −0.22 e Å−3 |
[Mn(C5H2N2O4)(C12H8N2)(H2O)2] | γ = 74.744 (1)° |
Mr = 425.26 | V = 841.58 (3) Å3 |
Triclinic, P1 | Z = 2 |
a = 8.3173 (2) Å | Mo Kα radiation |
b = 8.9875 (2) Å | µ = 0.83 mm−1 |
c = 11.9509 (3) Å | T = 293 K |
α = 78.278 (1)° | 0.15 × 0.12 × 0.10 mm |
β = 82.910 (1)° |
Bruker SMART diffractometer | 2950 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 2539 reflections with I > 2σ(I) |
Tmin = 0.886, Tmax = 0.922 | Rint = 0.027 |
9718 measured reflections |
R[F2 > 2σ(F2)] = 0.030 | 0 restraints |
wR(F2) = 0.072 | H-atom parameters constrained |
S = 1.05 | Δρmax = 0.22 e Å−3 |
2950 reflections | Δρmin = −0.22 e Å−3 |
257 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Mn1 | 0.11775 (4) | 0.19441 (4) | 0.78756 (3) | 0.03047 (11) | |
N1 | 0.2989 (2) | −0.03517 (19) | 0.85359 (15) | 0.0276 (4) | |
N2 | 0.3993 (2) | −0.29802 (19) | 0.93896 (15) | 0.0305 (4) | |
H2 | 0.3786 | −0.3884 | 0.9636 | 0.037* | |
N3 | −0.0891 (2) | 0.3718 (2) | 0.68697 (16) | 0.0336 (4) | |
N4 | 0.1453 (2) | 0.1395 (2) | 0.60556 (16) | 0.0358 (4) | |
O1 | 0.35761 (18) | 0.24240 (17) | 0.75978 (15) | 0.0416 (4) | |
O2 | 0.62451 (19) | 0.16456 (19) | 0.79231 (17) | 0.0532 (5) | |
O3 | 0.13026 (17) | −0.20586 (16) | 0.89654 (13) | 0.0335 (4) | |
O4 | 0.66615 (18) | −0.40215 (16) | 0.98859 (14) | 0.0385 (4) | |
O5 | 0.0660 (2) | 0.33271 (19) | 0.92439 (14) | 0.0414 (4) | |
H5A | 0.1454 | 0.3672 | 0.9392 | 0.085 (11)* | |
H5B | 0.0168 | 0.3024 | 0.9883 | 0.084 (11)* | |
O6 | −0.07494 (19) | 0.08117 (19) | 0.86706 (15) | 0.0437 (4) | |
H6A | −0.1673 | 0.1030 | 0.8365 | 0.071 (10)* | |
H6B | −0.0474 | −0.0182 | 0.8853 | 0.081 (11)* | |
C1 | 0.4836 (3) | 0.1428 (2) | 0.79908 (19) | 0.0312 (5) | |
C2 | 0.4575 (2) | −0.0191 (2) | 0.85488 (17) | 0.0258 (4) | |
C3 | 0.5858 (3) | −0.1354 (2) | 0.89906 (19) | 0.0304 (5) | |
H3 | 0.6906 | −0.1167 | 0.8987 | 0.036* | |
C4 | 0.5589 (3) | −0.2856 (2) | 0.94576 (18) | 0.0294 (5) | |
C5 | 0.2696 (2) | −0.1773 (2) | 0.89586 (17) | 0.0266 (4) | |
C6 | −0.2058 (3) | 0.4826 (3) | 0.7282 (2) | 0.0450 (6) | |
H6 | −0.2016 | 0.4959 | 0.8028 | 0.054* | |
C7 | −0.3352 (3) | 0.5805 (3) | 0.6641 (3) | 0.0534 (7) | |
H7 | −0.4157 | 0.6565 | 0.6962 | 0.064* | |
C8 | −0.3428 (3) | 0.5639 (3) | 0.5547 (3) | 0.0506 (7) | |
H8 | −0.4273 | 0.6299 | 0.5110 | 0.061* | |
C9 | −0.2226 (3) | 0.4470 (3) | 0.5079 (2) | 0.0409 (6) | |
C10 | −0.2204 (3) | 0.4214 (3) | 0.3930 (2) | 0.0508 (7) | |
H10 | −0.3020 | 0.4849 | 0.3458 | 0.061* | |
C11 | −0.1026 (4) | 0.3072 (3) | 0.3523 (2) | 0.0518 (7) | |
H11 | −0.1045 | 0.2926 | 0.2776 | 0.062* | |
C12 | 0.0259 (3) | 0.2076 (3) | 0.4220 (2) | 0.0427 (6) | |
C13 | 0.1512 (4) | 0.0871 (3) | 0.3838 (2) | 0.0521 (7) | |
H13 | 0.1534 | 0.0681 | 0.3099 | 0.062* | |
C14 | 0.2700 (3) | −0.0023 (3) | 0.4549 (2) | 0.0525 (7) | |
H14 | 0.3547 | −0.0817 | 0.4300 | 0.063* | |
C15 | 0.2621 (3) | 0.0277 (3) | 0.5655 (2) | 0.0439 (6) | |
H15 | 0.3431 | −0.0342 | 0.6138 | 0.053* | |
C16 | 0.0279 (3) | 0.2301 (3) | 0.53475 (19) | 0.0343 (5) | |
C17 | −0.0985 (3) | 0.3524 (2) | 0.57867 (19) | 0.0329 (5) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Mn1 | 0.02175 (18) | 0.03294 (19) | 0.0356 (2) | −0.00587 (13) | −0.00776 (14) | −0.00124 (14) |
N1 | 0.0201 (9) | 0.0290 (9) | 0.0327 (10) | −0.0066 (7) | −0.0040 (7) | −0.0010 (7) |
N2 | 0.0263 (9) | 0.0241 (9) | 0.0415 (11) | −0.0077 (7) | −0.0084 (8) | −0.0008 (8) |
N3 | 0.0267 (10) | 0.0351 (10) | 0.0387 (11) | −0.0079 (8) | −0.0068 (8) | −0.0029 (8) |
N4 | 0.0300 (10) | 0.0404 (10) | 0.0362 (11) | −0.0080 (8) | −0.0044 (8) | −0.0048 (9) |
O1 | 0.0251 (8) | 0.0330 (8) | 0.0610 (11) | −0.0081 (7) | −0.0124 (7) | 0.0117 (7) |
O2 | 0.0238 (9) | 0.0409 (9) | 0.0900 (14) | −0.0128 (7) | −0.0162 (9) | 0.0134 (9) |
O3 | 0.0240 (8) | 0.0351 (8) | 0.0431 (9) | −0.0116 (6) | −0.0060 (7) | −0.0026 (7) |
O4 | 0.0276 (8) | 0.0280 (8) | 0.0585 (11) | −0.0045 (6) | −0.0166 (7) | 0.0006 (7) |
O5 | 0.0368 (9) | 0.0515 (10) | 0.0428 (10) | −0.0209 (8) | −0.0032 (8) | −0.0105 (8) |
O6 | 0.0266 (9) | 0.0398 (10) | 0.0637 (12) | −0.0115 (7) | −0.0110 (8) | 0.0022 (8) |
C1 | 0.0237 (11) | 0.0313 (11) | 0.0374 (13) | −0.0075 (9) | −0.0050 (9) | −0.0011 (9) |
C2 | 0.0211 (10) | 0.0297 (10) | 0.0268 (11) | −0.0063 (8) | −0.0028 (8) | −0.0046 (8) |
C3 | 0.0213 (11) | 0.0303 (11) | 0.0401 (13) | −0.0079 (9) | −0.0066 (9) | −0.0031 (9) |
C4 | 0.0254 (11) | 0.0298 (11) | 0.0338 (12) | −0.0055 (9) | −0.0067 (9) | −0.0069 (9) |
C5 | 0.0242 (11) | 0.0298 (11) | 0.0265 (11) | −0.0070 (8) | −0.0030 (9) | −0.0052 (9) |
C6 | 0.0357 (14) | 0.0430 (14) | 0.0547 (16) | −0.0043 (11) | −0.0076 (12) | −0.0096 (12) |
C7 | 0.0371 (14) | 0.0415 (14) | 0.077 (2) | −0.0003 (11) | −0.0107 (14) | −0.0080 (14) |
C8 | 0.0368 (14) | 0.0400 (14) | 0.073 (2) | −0.0092 (11) | −0.0255 (13) | 0.0083 (13) |
C9 | 0.0365 (13) | 0.0380 (13) | 0.0495 (15) | −0.0170 (10) | −0.0175 (11) | 0.0083 (11) |
C10 | 0.0535 (16) | 0.0579 (16) | 0.0433 (16) | −0.0286 (14) | −0.0259 (13) | 0.0189 (13) |
C11 | 0.0628 (18) | 0.0657 (18) | 0.0334 (14) | −0.0306 (15) | −0.0145 (13) | 0.0025 (13) |
C12 | 0.0473 (15) | 0.0529 (15) | 0.0341 (14) | −0.0268 (12) | −0.0046 (11) | −0.0022 (11) |
C13 | 0.0637 (18) | 0.0646 (17) | 0.0367 (15) | −0.0308 (15) | 0.0069 (13) | −0.0155 (13) |
C14 | 0.0529 (17) | 0.0530 (16) | 0.0520 (17) | −0.0133 (13) | 0.0118 (14) | −0.0193 (13) |
C15 | 0.0381 (14) | 0.0452 (14) | 0.0460 (15) | −0.0065 (11) | −0.0009 (11) | −0.0088 (12) |
C16 | 0.0335 (12) | 0.0402 (12) | 0.0323 (13) | −0.0184 (10) | −0.0046 (10) | 0.0006 (10) |
C17 | 0.0290 (12) | 0.0359 (12) | 0.0355 (13) | −0.0160 (9) | −0.0076 (10) | 0.0034 (10) |
Mn1—O1 | 2.1231 (15) | C2—C3 | 1.356 (3) |
Mn1—O6 | 2.1439 (15) | C3—C4 | 1.416 (3) |
Mn1—O5 | 2.1852 (16) | C3—H3 | 0.9300 |
Mn1—N1 | 2.2686 (16) | C6—C7 | 1.396 (3) |
Mn1—N3 | 2.2880 (18) | C6—H6 | 0.9300 |
Mn1—N4 | 2.2979 (19) | C7—C8 | 1.356 (4) |
N1—C5 | 1.348 (3) | C7—H7 | 0.9300 |
N1—C2 | 1.366 (2) | C8—C9 | 1.401 (4) |
N2—C4 | 1.375 (3) | C8—H8 | 0.9300 |
N2—C5 | 1.378 (3) | C9—C17 | 1.402 (3) |
N2—H2 | 0.8600 | C9—C10 | 1.435 (4) |
N3—C6 | 1.323 (3) | C10—C11 | 1.344 (4) |
N3—C17 | 1.355 (3) | C10—H10 | 0.9300 |
N4—C15 | 1.323 (3) | C11—C12 | 1.432 (4) |
N4—C16 | 1.356 (3) | C11—H11 | 0.9300 |
O1—C1 | 1.256 (2) | C12—C13 | 1.399 (4) |
O2—C1 | 1.229 (2) | C12—C16 | 1.405 (3) |
O3—C5 | 1.250 (2) | C13—C14 | 1.362 (4) |
O4—C4 | 1.248 (2) | C13—H13 | 0.9300 |
O5—H5A | 0.8500 | C14—C15 | 1.392 (4) |
O5—H5B | 0.8500 | C14—H14 | 0.9300 |
O6—H6A | 0.8499 | C15—H15 | 0.9300 |
O6—H6B | 0.8501 | C16—C17 | 1.442 (3) |
C1—C2 | 1.531 (3) | ||
O1—Mn1—O6 | 157.87 (6) | O4—C4—N2 | 119.95 (18) |
O1—Mn1—O5 | 87.31 (6) | O4—C4—C3 | 125.78 (19) |
O6—Mn1—O5 | 88.81 (6) | N2—C4—C3 | 114.26 (18) |
O1—Mn1—N1 | 74.55 (6) | O3—C5—N1 | 123.06 (18) |
O6—Mn1—N1 | 85.75 (6) | O3—C5—N2 | 118.06 (18) |
O5—Mn1—N1 | 106.65 (6) | N1—C5—N2 | 118.87 (17) |
O1—Mn1—N3 | 116.16 (6) | N3—C6—C7 | 122.6 (3) |
O6—Mn1—N3 | 85.65 (6) | N3—C6—H6 | 118.7 |
O5—Mn1—N3 | 90.50 (6) | C7—C6—H6 | 118.7 |
N1—Mn1—N3 | 160.61 (6) | C8—C7—C6 | 119.6 (3) |
O1—Mn1—N4 | 89.63 (7) | C8—C7—H7 | 120.2 |
O6—Mn1—N4 | 101.40 (7) | C6—C7—H7 | 120.2 |
O5—Mn1—N4 | 159.04 (7) | C7—C8—C9 | 119.7 (2) |
N1—Mn1—N4 | 92.45 (6) | C7—C8—H8 | 120.1 |
N3—Mn1—N4 | 72.31 (7) | C9—C8—H8 | 120.1 |
C5—N1—C2 | 117.78 (17) | C8—C9—C17 | 117.0 (2) |
C5—N1—Mn1 | 129.53 (13) | C8—C9—C10 | 123.6 (2) |
C2—N1—Mn1 | 112.58 (12) | C17—C9—C10 | 119.4 (2) |
C4—N2—C5 | 125.27 (17) | C11—C10—C9 | 121.2 (2) |
C4—N2—H2 | 117.4 | C11—C10—H10 | 119.4 |
C5—N2—H2 | 117.4 | C9—C10—H10 | 119.4 |
C6—N3—C17 | 118.0 (2) | C10—C11—C12 | 121.0 (2) |
C6—N3—Mn1 | 125.65 (16) | C10—C11—H11 | 119.5 |
C17—N3—Mn1 | 116.18 (14) | C12—C11—H11 | 119.5 |
C15—N4—C16 | 118.1 (2) | C13—C12—C16 | 117.5 (2) |
C15—N4—Mn1 | 126.10 (16) | C13—C12—C11 | 123.3 (2) |
C16—N4—Mn1 | 115.76 (15) | C16—C12—C11 | 119.2 (2) |
C1—O1—Mn1 | 120.96 (13) | C14—C13—C12 | 120.0 (2) |
Mn1—O5—H5A | 117.0 | C14—C13—H13 | 120.0 |
Mn1—O5—H5B | 121.2 | C12—C13—H13 | 120.0 |
H5A—O5—H5B | 106.8 | C13—C14—C15 | 118.7 (2) |
Mn1—O6—H6A | 119.7 | C13—C14—H14 | 120.6 |
Mn1—O6—H6B | 117.1 | C15—C14—H14 | 120.6 |
H6A—O6—H6B | 105.6 | N4—C15—C14 | 123.4 (2) |
O2—C1—O1 | 124.9 (2) | N4—C15—H15 | 118.3 |
O2—C1—C2 | 118.71 (18) | C14—C15—H15 | 118.3 |
O1—C1—C2 | 116.29 (17) | N4—C16—C12 | 122.2 (2) |
C3—C2—N1 | 124.23 (19) | N4—C16—C17 | 117.9 (2) |
C3—C2—C1 | 120.98 (18) | C12—C16—C17 | 119.9 (2) |
N1—C2—C1 | 114.78 (17) | N3—C17—C9 | 123.0 (2) |
C2—C3—C4 | 119.51 (18) | N3—C17—C16 | 117.71 (19) |
C2—C3—H3 | 120.2 | C9—C17—C16 | 119.2 (2) |
C4—C3—H3 | 120.2 | ||
O1—Mn1—N1—C5 | −176.35 (19) | C5—N2—C4—O4 | 178.6 (2) |
O6—Mn1—N1—C5 | 13.84 (18) | C5—N2—C4—C3 | −2.7 (3) |
O5—Mn1—N1—C5 | 101.32 (18) | C2—C3—C4—O4 | 179.8 (2) |
N3—Mn1—N1—C5 | −50.0 (3) | C2—C3—C4—N2 | 1.1 (3) |
N4—Mn1—N1—C5 | −87.41 (18) | C2—N1—C5—O3 | −178.39 (19) |
O1—Mn1—N1—C2 | 7.66 (13) | Mn1—N1—C5—O3 | 5.8 (3) |
O6—Mn1—N1—C2 | −162.15 (14) | C2—N1—C5—N2 | 0.6 (3) |
O5—Mn1—N1—C2 | −74.67 (14) | Mn1—N1—C5—N2 | −175.20 (13) |
N3—Mn1—N1—C2 | 133.99 (19) | C4—N2—C5—O3 | −179.11 (19) |
N4—Mn1—N1—C2 | 96.60 (14) | C4—N2—C5—N1 | 1.8 (3) |
O1—Mn1—N3—C6 | −101.28 (19) | C17—N3—C6—C7 | −1.0 (3) |
O6—Mn1—N3—C6 | 74.74 (19) | Mn1—N3—C6—C7 | −175.60 (18) |
O5—Mn1—N3—C6 | −14.03 (19) | N3—C6—C7—C8 | −0.6 (4) |
N1—Mn1—N3—C6 | 138.6 (2) | C6—C7—C8—C9 | 1.2 (4) |
N4—Mn1—N3—C6 | 178.2 (2) | C7—C8—C9—C17 | −0.3 (3) |
O1—Mn1—N3—C17 | 84.04 (15) | C7—C8—C9—C10 | −179.7 (2) |
O6—Mn1—N3—C17 | −99.94 (15) | C8—C9—C10—C11 | −179.8 (2) |
O5—Mn1—N3—C17 | 171.29 (15) | C17—C9—C10—C11 | 0.7 (4) |
N1—Mn1—N3—C17 | −36.1 (3) | C9—C10—C11—C12 | −0.4 (4) |
N4—Mn1—N3—C17 | 3.49 (14) | C10—C11—C12—C13 | 180.0 (2) |
O1—Mn1—N4—C15 | 60.93 (19) | C10—C11—C12—C16 | 0.1 (4) |
O6—Mn1—N4—C15 | −99.75 (19) | C16—C12—C13—C14 | −0.5 (4) |
O5—Mn1—N4—C15 | 142.4 (2) | C11—C12—C13—C14 | 179.6 (2) |
N1—Mn1—N4—C15 | −13.59 (19) | C12—C13—C14—C15 | 0.8 (4) |
N3—Mn1—N4—C15 | 178.6 (2) | C16—N4—C15—C14 | −0.4 (3) |
O1—Mn1—N4—C16 | −120.22 (15) | Mn1—N4—C15—C14 | 178.45 (18) |
O6—Mn1—N4—C16 | 79.11 (15) | C13—C14—C15—N4 | −0.4 (4) |
O5—Mn1—N4—C16 | −38.7 (3) | C15—N4—C16—C12 | 0.7 (3) |
N1—Mn1—N4—C16 | 165.26 (15) | Mn1—N4—C16—C12 | −178.23 (16) |
N3—Mn1—N4—C16 | −2.52 (14) | C15—N4—C16—C17 | −179.66 (19) |
O6—Mn1—O1—C1 | 19.9 (3) | Mn1—N4—C16—C17 | 1.4 (2) |
O5—Mn1—O1—C1 | 100.05 (18) | C13—C12—C16—N4 | −0.3 (3) |
N1—Mn1—O1—C1 | −8.05 (17) | C11—C12—C16—N4 | 179.6 (2) |
N3—Mn1—O1—C1 | −170.71 (16) | C13—C12—C16—C17 | −179.9 (2) |
N4—Mn1—O1—C1 | −100.69 (18) | C11—C12—C16—C17 | 0.0 (3) |
Mn1—O1—C1—O2 | −175.75 (19) | C6—N3—C17—C9 | 2.0 (3) |
Mn1—O1—C1—C2 | 6.9 (3) | Mn1—N3—C17—C9 | 177.10 (16) |
C5—N1—C2—C3 | −2.1 (3) | C6—N3—C17—C16 | −179.21 (19) |
Mn1—N1—C2—C3 | 174.40 (17) | Mn1—N3—C17—C16 | −4.1 (2) |
C5—N1—C2—C1 | 176.54 (18) | C8—C9—C17—N3 | −1.4 (3) |
Mn1—N1—C2—C1 | −7.0 (2) | C10—C9—C17—N3 | 178.1 (2) |
O2—C1—C2—C3 | 1.8 (3) | C8—C9—C17—C16 | 179.9 (2) |
O1—C1—C2—C3 | 179.4 (2) | C10—C9—C17—C16 | −0.6 (3) |
O2—C1—C2—N1 | −176.8 (2) | N4—C16—C17—N3 | 1.8 (3) |
O1—C1—C2—N1 | 0.7 (3) | C12—C16—C17—N3 | −178.55 (19) |
N1—C2—C3—C4 | 1.2 (3) | N4—C16—C17—C9 | −179.33 (19) |
C1—C2—C3—C4 | −177.38 (19) | C12—C16—C17—C9 | 0.3 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···O4i | 0.86 | 1.97 | 2.831 (2) | 177 |
O5—H5A···O4ii | 0.85 | 2.00 | 2.829 (2) | 164 |
O5—H5B···O3iii | 0.85 | 1.95 | 2.769 (2) | 162 |
O6—H6A···O2iv | 0.85 | 1.79 | 2.627 (2) | 170 |
O6—H6B···O3 | 0.85 | 1.92 | 2.675 (2) | 147 |
Symmetry codes: (i) −x+1, −y−1, −z+2; (ii) −x+1, −y, −z+2; (iii) −x, −y, −z+2; (iv) x−1, y, z. |
Experimental details
Crystal data | |
Chemical formula | [Mn(C5H2N2O4)(C12H8N2)(H2O)2] |
Mr | 425.26 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 293 |
a, b, c (Å) | 8.3173 (2), 8.9875 (2), 11.9509 (3) |
α, β, γ (°) | 78.278 (1), 82.910 (1), 74.744 (1) |
V (Å3) | 841.58 (3) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.83 |
Crystal size (mm) | 0.15 × 0.12 × 0.10 |
Data collection | |
Diffractometer | Bruker SMART diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.886, 0.922 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 9718, 2950, 2539 |
Rint | 0.027 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.030, 0.072, 1.05 |
No. of reflections | 2950 |
No. of parameters | 257 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.22, −0.22 |
Computer programs: SMART (Bruker, 2007), SAINT (Bruker, 2007), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
Mn1—O1 | 2.1231 (15) | Mn1—N1 | 2.2686 (16) |
Mn1—O6 | 2.1439 (15) | Mn1—N3 | 2.2880 (18) |
Mn1—O5 | 2.1852 (16) | Mn1—N4 | 2.2979 (19) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···O4i | 0.86 | 1.97 | 2.831 (2) | 177 |
O5—H5A···O4ii | 0.85 | 2.00 | 2.829 (2) | 164 |
O5—H5B···O3iii | 0.85 | 1.95 | 2.769 (2) | 162 |
O6—H6A···O2iv | 0.85 | 1.79 | 2.627 (2) | 170 |
O6—H6B···O3 | 0.85 | 1.92 | 2.675 (2) | 147 |
Symmetry codes: (i) −x+1, −y−1, −z+2; (ii) −x+1, −y, −z+2; (iii) −x, −y, −z+2; (iv) x−1, y, z. |
Acknowledgements
The authors thank the Postgraduate Foundation of Taishan University for financial support.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Manganese is an important element in organisms and involved in many biochemical processes (Mukhopadhyay et al., 2004 and Ren et al., 2005). It may be observed in the active parts of many enzymes. Orotic acid (2, 6-dioxo-1, 2, 3, 6-tetrahydropyrimidine-4- carboxylic acid), an important pyrimidine derivative as the effective precursor in the biosynthesis of pyrimidine base of nucleic acids in living organisms, plays an important role in bioinorganic chemistry and pharmaceutical studies (Lieberman et al., 1955), material science, coordination chemistry and other aspects (Darensbourg et al., 1998). Many complexes of the orotate ligand have been reported (Hambley et al., 1995).
In the title compound (Fig, 1), Mn(C12H8N2)(C5H2N2O4)(H2O)2, the Mn(II) ion is coordinated by N and O atoms from the orotate (2, 6-dioxo-1, 2, 3, 6-tetrahydropyrimidine- 4-carboxylate) ligand. The bond lengths and angles are in good agreement with reported values (Nepveu et al., 1995). In the crystal structure, the molecule with its two coordinated water molecules is linked into infinite chains by O—H···O and N—H···O hydrogen bonds.