organic compounds
Methyl 9H-xanthene-9-carboxylate
aSchool of Chemistry, Monash University, Wellington Road, Clayton, Victoria 3800, Australia
*Correspondence e-mail: pamela.dean@sci.monash.edu.au
The title compound, C15H12O3, was obtained unintentionally as the by-product of an attempted recrystallization from methanol of propantheline bromide, an antimuscarinic drug. The xanthone unit is folded, with a dihedral angle of 24.81 (9)° between the benzene rings. The ester substituent adopts a trans with a C—C—O—C torsion angle of 178.4 (1)°. The molecules pack in distinct layers, facilitated by C—H⋯π and weak π–π ring interactions. A weak C—H⋯O interaction also occurs; however, no classical hydrogen bonding is observed.
Related literature
For details of the first spectroscopic evidence of the transesterification of propantheline bromide by methanol to 9H-xanthene-9-carboxylic acid methyl ester, see: Avdovich et al. (1986). For a description of the comparative effectiveness of propantheline bromide for the treatment of neurogenic detrusor overactivity, see: George et al. (2007).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2005); cell APEX2; data reduction: APEX2; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: POV-RAY for Windows (Persistence of Vision, 1999); software used to prepare material for publication: PLATON (Spek, 2003).
Supporting information
10.1107/S1600536808005990/wn2242sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808005990/wn2242Isup2.hkl
The title compound was obtained unintentionally as the product of an attempted recrystallization of propantheline bromide (50 mg) in methanol (2 ml) at room temperature. Crystals resulted after 6 days; these were coated with Paratone N oil (Exxon Chemical Co., TX, USA) immediately after isolation and cooled in a stream of nitrogen vapour on the diffractometer. Melting point: 360.7 K.
All H atoms were observed in difference syntheses and were then placed in geometrically idealized positions and constrained to ride on their parent atoms with C—H distances in the range 0.95–1.00 Å. Uiso(H) = xUeq(C), where x = 1.5 for methyl and 1.2 for all other C atoms.
Data collection: APEX2 (Bruker, 2005); cell
APEX2 (Bruker, 2005); data reduction: APEX2 (Bruker, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: POV-RAY for Windows (Persistence of Vision, 1999); software used to prepare material for publication: PLATON (Spek, 2003).Fig. 1. The molecular structure of the title compound, with displacement ellipsoids drawn at the 50% probability level and hydrogen atoms as spheres of arbitrary radius. | |
Fig. 2. A ball-and-stick representation of the unit-cell contents, viewed down the b axis. |
C15H12O3 | F(000) = 1008 |
Mr = 240.25 | Dx = 1.372 Mg m−3 |
Monoclinic, C2/c | Melting point: 360.7 K |
Hall symbol: -C 2yc | Mo Kα radiation, λ = 0.71073 Å |
a = 25.6601 (16) Å | Cell parameters from 1829 reflections |
b = 5.7624 (3) Å | θ = 2.6–25.8° |
c = 15.7578 (9) Å | µ = 0.10 mm−1 |
β = 92.933 (4)° | T = 123 K |
V = 2327.0 (2) Å3 | Prismatic, colourless |
Z = 8 | 0.50 × 0.50 × 0.50 mm |
Bruker KappaAPEXII diffractometer | 2672 independent reflections |
Radiation source: fine-focus sealed tube | 1985 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.050 |
0.5° frames in ϕ and ω scans | θmax = 27.5°, θmin = 1.6° |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | h = −33→33 |
Tmin = 0.932, Tmax = 0.954 | k = −7→7 |
11906 measured reflections | l = −20→20 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.050 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.106 | H-atom parameters constrained |
S = 1.06 | w = 1/[σ2(Fo2) + (0.0212P)2 + 2.7981P] where P = (Fo2 + 2Fc2)/3 |
2672 reflections | (Δ/σ)max < 0.001 |
166 parameters | Δρmax = 0.20 e Å−3 |
0 restraints | Δρmin = −0.21 e Å−3 |
C15H12O3 | V = 2327.0 (2) Å3 |
Mr = 240.25 | Z = 8 |
Monoclinic, C2/c | Mo Kα radiation |
a = 25.6601 (16) Å | µ = 0.10 mm−1 |
b = 5.7624 (3) Å | T = 123 K |
c = 15.7578 (9) Å | 0.50 × 0.50 × 0.50 mm |
β = 92.933 (4)° |
Bruker KappaAPEXII diffractometer | 2672 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | 1985 reflections with I > 2σ(I) |
Tmin = 0.932, Tmax = 0.954 | Rint = 0.050 |
11906 measured reflections |
R[F2 > 2σ(F2)] = 0.050 | 0 restraints |
wR(F2) = 0.106 | H-atom parameters constrained |
S = 1.06 | Δρmax = 0.20 e Å−3 |
2672 reflections | Δρmin = −0.21 e Å−3 |
166 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.33199 (5) | −0.0433 (2) | 0.46758 (8) | 0.0291 (4) | |
O3 | 0.44741 (5) | 0.1331 (2) | 0.55663 (8) | 0.0317 (4) | |
C1 | 0.35919 (6) | 0.0509 (3) | 0.40209 (11) | 0.0246 (4) | |
O2 | 0.46182 (5) | 0.5104 (2) | 0.57999 (10) | 0.0460 (5) | |
C5 | 0.41061 (7) | 0.3418 (3) | 0.33969 (11) | 0.0296 (5) | |
H5 | 0.4285 | 0.4860 | 0.3432 | 0.036* | |
C8 | 0.34065 (6) | 0.3209 (3) | 0.54356 (11) | 0.0270 (5) | |
C14 | 0.43644 (7) | 0.3568 (3) | 0.54706 (11) | 0.0269 (4) | |
C9 | 0.32151 (7) | 0.4651 (4) | 0.60572 (11) | 0.0340 (5) | |
H9 | 0.3374 | 0.6117 | 0.6166 | 0.041* | |
C4 | 0.40994 (7) | 0.2167 (4) | 0.26464 (12) | 0.0344 (5) | |
H4 | 0.4275 | 0.2744 | 0.2174 | 0.041* | |
C2 | 0.35812 (7) | −0.0765 (3) | 0.32741 (11) | 0.0296 (5) | |
H2 | 0.3400 | −0.2202 | 0.3236 | 0.036* | |
C12 | 0.27490 (7) | 0.0372 (4) | 0.57561 (11) | 0.0320 (5) | |
H12 | 0.2591 | −0.1099 | 0.5653 | 0.038* | |
C10 | 0.27969 (7) | 0.3977 (4) | 0.65182 (12) | 0.0404 (6) | |
H10 | 0.2668 | 0.4983 | 0.6936 | 0.048* | |
C11 | 0.25674 (7) | 0.1837 (4) | 0.63695 (12) | 0.0383 (6) | |
H11 | 0.2282 | 0.1369 | 0.6691 | 0.046* | |
C3 | 0.38359 (7) | 0.0071 (4) | 0.25876 (12) | 0.0336 (5) | |
H3 | 0.3831 | −0.0792 | 0.2074 | 0.040* | |
C6 | 0.38552 (6) | 0.2600 (3) | 0.41010 (11) | 0.0255 (4) | |
C7 | 0.38629 (7) | 0.3930 (3) | 0.49288 (11) | 0.0265 (5) | |
H7 | 0.3828 | 0.5622 | 0.4796 | 0.032* | |
C13 | 0.31655 (6) | 0.1086 (3) | 0.52950 (11) | 0.0266 (4) | |
C15 | 0.49380 (7) | 0.0797 (4) | 0.60921 (12) | 0.0349 (5) | |
H15A | 0.4911 | 0.1505 | 0.6654 | 0.052* | |
H15B | 0.5245 | 0.1415 | 0.5825 | 0.052* | |
H15C | 0.4972 | −0.0889 | 0.6154 | 0.052* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0329 (7) | 0.0252 (7) | 0.0294 (7) | 0.0015 (5) | 0.0027 (5) | −0.0008 (5) |
O3 | 0.0293 (7) | 0.0257 (7) | 0.0385 (8) | 0.0029 (6) | −0.0121 (5) | −0.0011 (6) |
C1 | 0.0234 (8) | 0.0252 (10) | 0.0251 (9) | 0.0051 (7) | −0.0011 (7) | −0.0002 (7) |
O2 | 0.0419 (8) | 0.0328 (8) | 0.0611 (10) | −0.0017 (7) | −0.0166 (7) | −0.0116 (7) |
C5 | 0.0264 (9) | 0.0298 (10) | 0.0324 (10) | 0.0028 (8) | −0.0027 (7) | 0.0057 (8) |
C8 | 0.0260 (9) | 0.0296 (10) | 0.0248 (9) | 0.0088 (7) | −0.0044 (7) | −0.0016 (7) |
C14 | 0.0281 (9) | 0.0249 (10) | 0.0276 (9) | 0.0000 (8) | 0.0010 (7) | −0.0043 (8) |
C9 | 0.0329 (10) | 0.0396 (12) | 0.0284 (10) | 0.0133 (9) | −0.0089 (8) | −0.0074 (8) |
C4 | 0.0309 (10) | 0.0457 (13) | 0.0267 (10) | 0.0086 (9) | 0.0019 (7) | 0.0050 (9) |
C2 | 0.0288 (9) | 0.0280 (10) | 0.0314 (10) | 0.0060 (8) | −0.0048 (7) | −0.0042 (8) |
C12 | 0.0286 (9) | 0.0384 (11) | 0.0285 (10) | 0.0052 (8) | −0.0038 (7) | 0.0087 (8) |
C10 | 0.0360 (10) | 0.0603 (15) | 0.0245 (10) | 0.0203 (10) | −0.0028 (8) | −0.0072 (9) |
C11 | 0.0298 (10) | 0.0604 (15) | 0.0246 (10) | 0.0124 (10) | 0.0005 (7) | 0.0091 (9) |
C3 | 0.0321 (10) | 0.0426 (12) | 0.0254 (10) | 0.0111 (9) | −0.0044 (7) | −0.0061 (8) |
C6 | 0.0248 (8) | 0.0244 (10) | 0.0267 (9) | 0.0050 (7) | −0.0040 (7) | 0.0002 (7) |
C7 | 0.0310 (9) | 0.0204 (9) | 0.0277 (9) | 0.0051 (7) | −0.0037 (7) | −0.0015 (7) |
C13 | 0.0279 (9) | 0.0303 (10) | 0.0210 (9) | 0.0082 (8) | −0.0030 (7) | 0.0017 (7) |
C15 | 0.0261 (9) | 0.0417 (12) | 0.0361 (11) | 0.0036 (8) | −0.0071 (8) | 0.0010 (9) |
O1—C13 | 1.384 (2) | C4—C3 | 1.385 (3) |
O1—C1 | 1.386 (2) | C4—H4 | 0.9500 |
O3—C14 | 1.326 (2) | C2—C3 | 1.379 (3) |
O3—C15 | 1.448 (2) | C2—H2 | 0.9500 |
C1—C6 | 1.384 (2) | C12—C11 | 1.382 (3) |
C1—C2 | 1.386 (2) | C12—C13 | 1.385 (2) |
O2—C14 | 1.201 (2) | C12—H12 | 0.9500 |
C5—C4 | 1.384 (3) | C10—C11 | 1.381 (3) |
C5—C6 | 1.393 (2) | C10—H10 | 0.9500 |
C5—H5 | 0.9500 | C11—H11 | 0.9500 |
C8—C13 | 1.384 (3) | C3—H3 | 0.9500 |
C8—C9 | 1.393 (2) | C6—C7 | 1.512 (2) |
C8—C7 | 1.509 (2) | C7—H7 | 1.0000 |
C14—C7 | 1.522 (2) | C15—H15A | 0.9800 |
C9—C10 | 1.382 (3) | C15—H15B | 0.9800 |
C9—H9 | 0.9500 | C15—H15C | 0.9800 |
C13—O1—C1 | 116.79 (14) | C11—C10—H10 | 120.1 |
C14—O3—C15 | 115.78 (14) | C9—C10—H10 | 120.1 |
C6—C1—O1 | 122.37 (15) | C10—C11—C12 | 120.52 (18) |
C6—C1—C2 | 121.80 (16) | C10—C11—H11 | 119.7 |
O1—C1—C2 | 115.83 (16) | C12—C11—H11 | 119.7 |
C4—C5—C6 | 121.21 (18) | C2—C3—C4 | 120.11 (17) |
C4—C5—H5 | 119.4 | C2—C3—H3 | 119.9 |
C6—C5—H5 | 119.4 | C4—C3—H3 | 119.9 |
C13—C8—C9 | 117.98 (17) | C1—C6—C5 | 117.73 (16) |
C13—C8—C7 | 120.76 (15) | C1—C6—C7 | 120.31 (16) |
C9—C8—C7 | 121.26 (17) | C5—C6—C7 | 121.95 (16) |
O2—C14—O3 | 124.06 (17) | C8—C7—C6 | 109.91 (15) |
O2—C14—C7 | 124.42 (16) | C8—C7—C14 | 108.79 (14) |
O3—C14—C7 | 111.45 (15) | C6—C7—C14 | 112.80 (14) |
C10—C9—C8 | 120.9 (2) | C8—C7—H7 | 108.4 |
C10—C9—H9 | 119.6 | C6—C7—H7 | 108.4 |
C8—C9—H9 | 119.6 | C14—C7—H7 | 108.4 |
C5—C4—C3 | 119.72 (18) | C8—C13—O1 | 122.03 (15) |
C5—C4—H4 | 120.1 | C8—C13—C12 | 121.96 (17) |
C3—C4—H4 | 120.1 | O1—C13—C12 | 116.00 (17) |
C3—C2—C1 | 119.42 (18) | O3—C15—H15A | 109.5 |
C3—C2—H2 | 120.3 | O3—C15—H15B | 109.5 |
C1—C2—H2 | 120.3 | H15A—C15—H15B | 109.5 |
C11—C12—C13 | 118.81 (19) | O3—C15—H15C | 109.5 |
C11—C12—H12 | 120.6 | H15A—C15—H15C | 109.5 |
C13—C12—H12 | 120.6 | H15B—C15—H15C | 109.5 |
C11—C10—C9 | 119.83 (18) | ||
C13—O1—C1—C6 | 21.8 (2) | C13—C8—C7—C6 | 22.5 (2) |
C13—O1—C1—C2 | −157.71 (15) | C9—C8—C7—C6 | −157.52 (16) |
C15—O3—C14—O2 | −1.3 (3) | C13—C8—C7—C14 | −101.48 (18) |
C15—O3—C14—C7 | −178.43 (14) | C9—C8—C7—C14 | 78.5 (2) |
C13—C8—C9—C10 | 0.0 (3) | C1—C6—C7—C8 | −22.1 (2) |
C7—C8—C9—C10 | 179.99 (16) | C5—C6—C7—C8 | 157.52 (16) |
C6—C5—C4—C3 | 0.5 (3) | C1—C6—C7—C14 | 99.48 (19) |
C6—C1—C2—C3 | −0.5 (3) | C5—C6—C7—C14 | −80.9 (2) |
O1—C1—C2—C3 | 179.03 (15) | O2—C14—C7—C8 | −105.6 (2) |
C8—C9—C10—C11 | 0.6 (3) | O3—C14—C7—C8 | 71.48 (18) |
C9—C10—C11—C12 | −0.7 (3) | O2—C14—C7—C6 | 132.14 (19) |
C13—C12—C11—C10 | 0.1 (3) | O3—C14—C7—C6 | −50.7 (2) |
C1—C2—C3—C4 | 0.0 (3) | C9—C8—C13—O1 | 178.26 (15) |
C5—C4—C3—C2 | 0.0 (3) | C7—C8—C13—O1 | −1.7 (2) |
O1—C1—C6—C5 | −178.53 (15) | C9—C8—C13—C12 | −0.6 (3) |
C2—C1—C6—C5 | 1.0 (2) | C7—C8—C13—C12 | 179.41 (16) |
O1—C1—C6—C7 | 1.1 (2) | C1—O1—C13—C8 | −21.5 (2) |
C2—C1—C6—C7 | −179.37 (15) | C1—O1—C13—C12 | 157.43 (15) |
C4—C5—C6—C1 | −1.0 (2) | C11—C12—C13—C8 | 0.5 (3) |
C4—C5—C6—C7 | 179.39 (16) | C11—C12—C13—O1 | −178.37 (15) |
D—H···A | D—H | H···A | D···A | D—H···A |
C15—H15C···O2i | 0.98 | 2.53 | 3.407 (3) | 149 |
C3—H3···Cg2ii | 0.95 | 2.95 | 3.668 (2) | 133 |
C11—H11···Cg1iii | 0.95 | 3.18 | 3.825 (2) | 127 |
C15—H15B···Cg1iv | 0.98 | 3.06 | 3.432 (2) | 104 |
C15—H15C···Cg1iv | 0.98 | 3.11 | 3.432 (2) | 101 |
Symmetry codes: (i) x, y−1, z; (ii) x, −y, z−1/2; (iii) −x+1/2, −y+1/2, −z+1; (iv) −x+1, −y, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C15H12O3 |
Mr | 240.25 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 123 |
a, b, c (Å) | 25.6601 (16), 5.7624 (3), 15.7578 (9) |
β (°) | 92.933 (4) |
V (Å3) | 2327.0 (2) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.50 × 0.50 × 0.50 |
Data collection | |
Diffractometer | Bruker KappaAPEXII diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2005) |
Tmin, Tmax | 0.932, 0.954 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 11906, 2672, 1985 |
Rint | 0.050 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.050, 0.106, 1.06 |
No. of reflections | 2672 |
No. of parameters | 166 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.20, −0.21 |
Computer programs: APEX2 (Bruker, 2005), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), POV-RAY for Windows (Persistence of Vision, 1999), PLATON (Spek, 2003).
D—H···A | D—H | H···A | D···A | D—H···A |
C15—H15C···O2i | 0.98 | 2.53 | 3.407 (3) | 149 |
C3—H3···Cg2ii | 0.95 | 2.95 | 3.668 (2) | 133 |
C11—H11···Cg1iii | 0.95 | 3.18 | 3.825 (2) | 127 |
C15—H15B···Cg1iv | 0.98 | 3.06 | 3.432 (2) | 104 |
C15—H15C···Cg1iv | 0.98 | 3.11 | 3.432 (2) | 101 |
Symmetry codes: (i) x, y−1, z; (ii) x, −y, z−1/2; (iii) −x+1/2, −y+1/2, −z+1; (iv) −x+1, −y, −z+1. |
CgI | CgJ | Cg···Cg | α | Symmetry position of CgJ |
Cg1 | Cg2 | 5.590 (1) | 59.44 | x,1-y,-1/2+z |
Cg1 | Cg2 | 4.944 (1) | 24.81 | 1/2-x,1/2-y,1-z |
Cg2 | Cg1 | 4.863 (1) | 59.44 | x,-y,1/2+z |
Cg2 | Cg2 | 3.684 (1) | 0.03 | 1/2-x,1/2-y,1-z |
Notes: Cg1 is the centroid of ring C1/C6; Cg2 is the centroid of ring C8/C13. |
Acknowledgements
PMD is grateful to Monash University for the Monash Graduate Scholarship and Monash International Postgraduate Research Scholarship, and to Monash University, School of Chemistry for funding for JT.
References
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It was found that propantheline bromide (George et al., 2007) undergoes facile transesterification by methanol to produce the by-product 9H-xanthene-9-carboxylic acid methyl ester (Avdovich et al., 1986). Surprisingly, the structural elucidation of this analogue (Fig. 1) has not been reported in the literature until now. Now the structural determination and analysis is briefly described.
The xanthone unit is bent, with the aromatic planes oriented to each other by an interplanar angle of 24.81 (9)°. The ester substituent adopts a trans staggered conformation with a C7—C14—O3—C15 torsion angle of 178.4 (1)°. Additionally, as is typical of an ester, the O3—C14 distance is 1.326 (2) Å and the O3—C15 distance is 1.448 (2) Å, indicating the sp2 hybridization of C14.
The overall packing is shown in Fig. 2. Molecules are related by centres of symmetry, resulting in a head-to-head arrangement, that packs in aromatic and non-aromatic layers lying parallel to the (100) plane. Fig. 2 displays the orientation of the molecules, facilitating the weak C—H···O hydrogen bonding between the methyl and carbonyl groups (distance: C15—H15C···O2i (i = x,y - 1,z) 3.407 (2) Å - see Table 1) and the C—H···π and weak π···π ring interactions (Table 2). A short range contact, 2.683 (2) Å, also occurs between the aromatic C4—H4 and the carbonyl oxygen O2 (distance: C4—H4···O2ii (ii = x,1 - y,-1/2 + z).