organic compounds
Propane-1,2-diammonium bis(6-carboxypyridine-2-carboxylate) dihydrate
aFaculty of Chemistry, Tarbiat Moallem University, 49 Mofateh Avenue, Tehran, Iran, and bDepartment of Chemistry, Faculty of Science, University of Kurdistan, Sanandaj, Iran
*Correspondence e-mail: haghabozorg@yahoo.com
The reaction of propane-1,2-diamine (pn) and pyridine-2,6-dicarboxylic acid (pydcH2) in a 1:2 molar ratio in aqueous solution resulted in the formation of the title compound, C3H12N22+·2C7H4NO4·2H2O or (pnH2)(pydcH)2·2H2O. The structure contains two monoanionic deprotonated forms of pyridine-2,6-dicarboxylic acid molecules (pydcH)−, a diprotonated propane-1,2-diamine (pnH2)2+, and two water molecules. A significant π–π stacking interaction is observed between the pyridyl rings of the (pydcH)− fragments, with a face-to-face distance of 3.6194 (9) Å. In the a wide range of non-covalent interactions consisting of ion pairing, hydrogen bonding [of the types of O—H⋯O, N—H⋯O, N—H⋯N and C—H⋯O, with D⋯A distances in the range 2.454 (2)–3.222 (2)Å] and π–π stacking interactions [centroid–centroid distance = 3.6194 (9) Å] connect the components into a supramolecular structure.
Related literature
For related literature, see: Aghabozorg et al. (2007, 2008); Aghabozorg, Ghadermazi & Attar Gharamaleki (2006); Aghabozorg, Ghadermazi & Ramezanipour (2006).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2007); cell APEX2; data reduction: APEX2; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536808013263/om2231sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808013263/om2231Isup2.hkl
Solutions of propane-1,2-diamine (40 mg, 1 mmol) in THF (10 ml) and pyridine-2,6-dicarboxylic acid (360 mg, 2 mmol) in H2O (10 ml) were added to each other in a 1:2 molar ratio, and the reaction mixture was heated at about 40°C for 2 h. Yellow crystals of the title compound were obtained from the solution after three weeks at room temperature.
The hydrogen atoms of NH3 and OH groups, and also H atoms of water molecules were found in difference Fourier synthesis. The H(C) atom positions were calculated. All H(N) and H(O) atoms were refined in isotropic approximation in rigid model, the H(C) atoms were refined in isotropic approximatiom in riding model with with the Uiso(H) parameters equal to 1.2 Ueq(Xi) for OH, CH and CH2 gropus and 1.5 Ueq(Xii) for NH3 and CH3 group, where U(Xi) and U(Ni) are respectively the equivalent thermal parameters of the atoms to which corresponding H atoms are bonded.
Data collection: APEX2 (Bruker, 2007); cell
APEX2 (Bruker, 2007); data reduction: APEX2 (Bruker, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).Fig. 1. The molecular structure of the title compound, with displacement ellipsoids drawn at the 50% probability level. | |
Fig. 2. A view of π-π stacking interactions between the two aromatic rings of (pydcH)- fragments with centroid-centroid distance of 3.6194 (9) Å [-x, 1 -y, 1 -z]. | |
Fig. 3. The crystal packing of the title compound with hydrogen bonds shown as dashed lines as viewed approximately down a. |
C3H12N22+·2C7H4NO4−·2(H2O) | Z = 2 |
Mr = 444.40 | F(000) = 468 |
Triclinic, P1 | Dx = 1.521 Mg m−3 |
a = 7.5587 (3) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 11.0388 (5) Å | Cell parameters from 2295 reflections |
c = 12.5821 (6) Å | θ = 3–27° |
α = 98.533 (1)° | µ = 0.13 mm−1 |
β = 99.844 (1)° | T = 100 K |
γ = 106.410 (1)° | Prism, light yellow |
V = 970.52 (7) Å3 | 0.11 × 0.10 × 0.06 mm |
Bruker SMART APEXII diffractometer | 4242 independent reflections |
Radiation source: fine-focus sealed tube | 3220 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.033 |
ϕ and ω scans | θmax = 27.0°, θmin = 1.7° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −9→9 |
Tmin = 0.984, Tmax = 0.993 | k = −14→14 |
10335 measured reflections | l = −16→16 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.040 | Hydrogen site location: mixed |
wR(F2) = 0.104 | H-atom parameters constrained |
S = 1.04 | w = 1/[σ2(Fo2) + (0.05P)2 + 0.22P] where P = (Fo2 + 2Fc2)/3 |
4242 reflections | (Δ/σ)max < 0.001 |
280 parameters | Δρmax = 0.36 e Å−3 |
0 restraints | Δρmin = −0.34 e Å−3 |
C3H12N22+·2C7H4NO4−·2(H2O) | γ = 106.410 (1)° |
Mr = 444.40 | V = 970.52 (7) Å3 |
Triclinic, P1 | Z = 2 |
a = 7.5587 (3) Å | Mo Kα radiation |
b = 11.0388 (5) Å | µ = 0.13 mm−1 |
c = 12.5821 (6) Å | T = 100 K |
α = 98.533 (1)° | 0.11 × 0.10 × 0.06 mm |
β = 99.844 (1)° |
Bruker SMART APEXII diffractometer | 4242 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 3220 reflections with I > 2σ(I) |
Tmin = 0.984, Tmax = 0.993 | Rint = 0.033 |
10335 measured reflections |
R[F2 > 2σ(F2)] = 0.040 | 0 restraints |
wR(F2) = 0.104 | H-atom parameters constrained |
S = 1.04 | Δρmax = 0.36 e Å−3 |
4242 reflections | Δρmin = −0.34 e Å−3 |
280 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.30330 (16) | 0.96417 (11) | 0.10525 (9) | 0.0158 (3) | |
H1 | 0.2728 | 1.0122 | 0.0610 | 0.019* | |
O2 | 0.12513 (17) | 0.79720 (11) | −0.03137 (9) | 0.0171 (3) | |
O3 | 0.62921 (18) | 0.89335 (11) | 0.43063 (10) | 0.0234 (3) | |
O4 | 0.58090 (17) | 0.69734 (11) | 0.46855 (9) | 0.0176 (3) | |
N1 | 0.38792 (19) | 0.80055 (12) | 0.23258 (11) | 0.0117 (3) | |
C1 | 0.4249 (2) | 0.71578 (15) | 0.29333 (13) | 0.0120 (3) | |
C2 | 0.3517 (2) | 0.58307 (15) | 0.25576 (13) | 0.0139 (3) | |
H2C | 0.3769 | 0.5267 | 0.3023 | 0.017* | |
C3 | 0.2419 (2) | 0.53364 (16) | 0.14993 (14) | 0.0150 (3) | |
H3A | 0.1918 | 0.4431 | 0.1220 | 0.018* | |
C4 | 0.2069 (2) | 0.61941 (16) | 0.08566 (14) | 0.0145 (3) | |
H4A | 0.1350 | 0.5888 | 0.0118 | 0.017* | |
C5 | 0.2784 (2) | 0.75089 (15) | 0.13067 (13) | 0.0117 (3) | |
C6 | 0.2292 (2) | 0.84218 (15) | 0.06044 (13) | 0.0126 (3) | |
C7 | 0.5543 (2) | 0.77185 (15) | 0.40738 (14) | 0.0139 (3) | |
O5 | −0.17333 (17) | 0.01198 (11) | 0.61266 (10) | 0.0175 (3) | |
H5 | −0.2412 | −0.0312 | 0.5480 | 0.021* | |
O6 | −0.18863 (17) | 0.17699 (11) | 0.53087 (9) | 0.0180 (3) | |
O7 | 0.41198 (17) | 0.28482 (12) | 1.04946 (10) | 0.0210 (3) | |
O8 | 0.20387 (17) | 0.08880 (11) | 0.97111 (9) | 0.0171 (3) | |
N2 | 0.08176 (19) | 0.17610 (13) | 0.79041 (11) | 0.0114 (3) | |
C8 | 0.0191 (2) | 0.22487 (15) | 0.70500 (13) | 0.0121 (3) | |
C9 | 0.0797 (2) | 0.35514 (16) | 0.70194 (13) | 0.0138 (3) | |
H9A | 0.0317 | 0.3853 | 0.6397 | 0.017* | |
C10 | 0.2115 (2) | 0.44020 (16) | 0.79162 (14) | 0.0154 (4) | |
H10A | 0.2559 | 0.5299 | 0.7923 | 0.019* | |
C11 | 0.2769 (2) | 0.39153 (16) | 0.87986 (13) | 0.0139 (3) | |
H11A | 0.3670 | 0.4478 | 0.9425 | 0.017* | |
C12 | 0.2104 (2) | 0.26003 (15) | 0.87667 (13) | 0.0111 (3) | |
C13 | −0.1263 (2) | 0.13271 (15) | 0.60740 (13) | 0.0130 (3) | |
C14 | 0.2828 (2) | 0.20755 (15) | 0.97451 (13) | 0.0132 (3) | |
N3 | 0.41675 (19) | 0.91821 (13) | 0.68441 (11) | 0.0129 (3) | |
H3B | 0.5070 | 0.9960 | 0.6940 | 0.019* | |
H3C | 0.3499 | 0.8938 | 0.6132 | 0.019* | |
H3D | 0.4730 | 0.8583 | 0.7004 | 0.019* | |
C15 | 0.2867 (2) | 0.92892 (17) | 0.75906 (14) | 0.0180 (4) | |
H15A | 0.2953 | 1.0207 | 0.7806 | 0.022* | |
H15B | 0.3282 | 0.8996 | 0.8269 | 0.022* | |
C16 | 0.0823 (2) | 0.85019 (15) | 0.70690 (14) | 0.0145 (3) | |
H16A | 0.0451 | 0.8752 | 0.6352 | 0.017* | |
C17 | 0.0413 (3) | 0.70574 (17) | 0.68557 (16) | 0.0230 (4) | |
H17A | −0.0931 | 0.6631 | 0.6510 | 0.034* | |
H17B | 0.0719 | 0.6791 | 0.7555 | 0.034* | |
H17C | 0.1184 | 0.6812 | 0.6363 | 0.034* | |
N4 | −0.03197 (19) | 0.88970 (13) | 0.78355 (11) | 0.0130 (3) | |
H4B | −0.1564 | 0.8435 | 0.7566 | 0.019* | |
H4C | −0.0168 | 0.9754 | 0.7894 | 0.019* | |
H4D | 0.0078 | 0.8743 | 0.8512 | 0.019* | |
O1W | 0.41860 (16) | 0.26610 (11) | 0.25748 (9) | 0.0162 (3) | |
H1B | 0.4897 | 0.3358 | 0.3049 | 0.019* | |
H1A | 0.4198 | 0.2719 | 0.1894 | 0.019* | |
O2W | 0.33952 (17) | 0.54108 (12) | 0.57226 (10) | 0.0204 (3) | |
H2B | 0.3933 | 0.5814 | 0.5260 | 0.024* | |
H2A | 0.3485 | 0.4636 | 0.5598 | 0.024* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0200 (6) | 0.0109 (6) | 0.0138 (6) | 0.0032 (5) | −0.0022 (5) | 0.0045 (5) |
O2 | 0.0199 (6) | 0.0167 (6) | 0.0112 (6) | 0.0044 (5) | −0.0032 (5) | 0.0026 (5) |
O3 | 0.0325 (8) | 0.0109 (6) | 0.0166 (6) | 0.0008 (5) | −0.0103 (6) | 0.0018 (5) |
O4 | 0.0226 (7) | 0.0144 (6) | 0.0135 (6) | 0.0041 (5) | −0.0012 (5) | 0.0055 (5) |
N1 | 0.0114 (7) | 0.0118 (7) | 0.0106 (6) | 0.0026 (5) | 0.0014 (5) | 0.0020 (5) |
C1 | 0.0105 (8) | 0.0130 (8) | 0.0126 (8) | 0.0033 (6) | 0.0029 (6) | 0.0030 (6) |
C2 | 0.0152 (8) | 0.0120 (8) | 0.0155 (8) | 0.0053 (6) | 0.0027 (7) | 0.0049 (6) |
C3 | 0.0156 (8) | 0.0108 (8) | 0.0170 (8) | 0.0032 (6) | 0.0030 (7) | 0.0005 (6) |
C4 | 0.0133 (8) | 0.0151 (8) | 0.0125 (8) | 0.0040 (7) | 0.0001 (6) | −0.0002 (6) |
C5 | 0.0092 (7) | 0.0131 (8) | 0.0125 (8) | 0.0029 (6) | 0.0024 (6) | 0.0028 (6) |
C6 | 0.0102 (8) | 0.0153 (8) | 0.0120 (8) | 0.0030 (6) | 0.0030 (6) | 0.0029 (6) |
C7 | 0.0156 (8) | 0.0120 (8) | 0.0139 (8) | 0.0047 (6) | 0.0024 (7) | 0.0025 (6) |
O5 | 0.0208 (6) | 0.0129 (6) | 0.0130 (6) | 0.0027 (5) | −0.0052 (5) | 0.0006 (5) |
O6 | 0.0221 (7) | 0.0159 (6) | 0.0121 (6) | 0.0045 (5) | −0.0040 (5) | 0.0030 (5) |
O7 | 0.0225 (7) | 0.0188 (7) | 0.0135 (6) | −0.0003 (5) | −0.0056 (5) | 0.0032 (5) |
O8 | 0.0211 (6) | 0.0132 (6) | 0.0144 (6) | 0.0040 (5) | −0.0017 (5) | 0.0042 (5) |
N2 | 0.0108 (7) | 0.0140 (7) | 0.0094 (6) | 0.0042 (5) | 0.0017 (5) | 0.0020 (5) |
C8 | 0.0110 (8) | 0.0145 (8) | 0.0106 (8) | 0.0045 (6) | 0.0023 (6) | 0.0015 (6) |
C9 | 0.0138 (8) | 0.0164 (9) | 0.0128 (8) | 0.0052 (7) | 0.0035 (6) | 0.0058 (6) |
C10 | 0.0156 (8) | 0.0123 (8) | 0.0184 (9) | 0.0035 (7) | 0.0041 (7) | 0.0046 (6) |
C11 | 0.0111 (8) | 0.0142 (8) | 0.0133 (8) | 0.0016 (6) | 0.0011 (6) | −0.0001 (6) |
C12 | 0.0096 (7) | 0.0125 (8) | 0.0110 (8) | 0.0031 (6) | 0.0033 (6) | 0.0014 (6) |
C13 | 0.0137 (8) | 0.0140 (8) | 0.0118 (8) | 0.0053 (6) | 0.0027 (6) | 0.0027 (6) |
C14 | 0.0144 (8) | 0.0132 (8) | 0.0128 (8) | 0.0054 (7) | 0.0035 (7) | 0.0024 (6) |
N3 | 0.0131 (7) | 0.0123 (7) | 0.0127 (7) | 0.0035 (5) | 0.0014 (6) | 0.0032 (5) |
C15 | 0.0154 (9) | 0.0192 (9) | 0.0162 (8) | 0.0026 (7) | 0.0038 (7) | −0.0004 (7) |
C16 | 0.0136 (8) | 0.0149 (8) | 0.0144 (8) | 0.0044 (7) | 0.0029 (7) | 0.0013 (6) |
C17 | 0.0234 (10) | 0.0160 (9) | 0.0278 (10) | 0.0036 (7) | 0.0090 (8) | 0.0007 (7) |
N4 | 0.0129 (7) | 0.0123 (7) | 0.0121 (7) | 0.0033 (5) | 0.0003 (5) | 0.0019 (5) |
O1W | 0.0175 (6) | 0.0152 (6) | 0.0134 (6) | 0.0030 (5) | 0.0006 (5) | 0.0027 (5) |
O2W | 0.0261 (7) | 0.0168 (6) | 0.0190 (6) | 0.0065 (5) | 0.0062 (5) | 0.0051 (5) |
O1—C6 | 1.2982 (19) | C9—H9A | 0.9500 |
O1—H1 | 0.8700 | C10—C11 | 1.380 (2) |
O2—C6 | 1.2239 (19) | C10—H10A | 0.9500 |
O3—C7 | 1.266 (2) | C11—C12 | 1.387 (2) |
O4—C7 | 1.240 (2) | C11—H11A | 0.9500 |
N1—C5 | 1.343 (2) | C12—C14 | 1.520 (2) |
N1—C1 | 1.351 (2) | N3—C15 | 1.487 (2) |
C1—C2 | 1.387 (2) | N3—H3B | 0.9100 |
C1—C7 | 1.521 (2) | N3—H3C | 0.9100 |
C2—C3 | 1.382 (2) | N3—H3D | 0.9100 |
C2—H2C | 0.9500 | C15—C16 | 1.516 (2) |
C3—C4 | 1.384 (2) | C15—H15A | 0.9900 |
C3—H3A | 0.9500 | C15—H15B | 0.9900 |
C4—C5 | 1.388 (2) | C16—N4 | 1.496 (2) |
C4—H4A | 0.9500 | C16—C17 | 1.509 (2) |
C5—C6 | 1.516 (2) | C16—H16A | 1.0000 |
O5—C13 | 1.2936 (19) | C17—H17A | 0.9800 |
O5—H5 | 0.8701 | C17—H17B | 0.9800 |
O6—C13 | 1.2260 (19) | C17—H17C | 0.9800 |
O7—C14 | 1.244 (2) | N4—H4B | 0.9100 |
O8—C14 | 1.2684 (19) | N4—H4C | 0.9100 |
N2—C8 | 1.346 (2) | N4—H4D | 0.9100 |
N2—C12 | 1.347 (2) | O1W—H1B | 0.8700 |
C8—C9 | 1.389 (2) | O1W—H1A | 0.8699 |
C8—C13 | 1.512 (2) | O2W—H2B | 0.8700 |
C9—C10 | 1.386 (2) | O2W—H2A | 0.8700 |
C6—O1—H1 | 111.7 | C11—C12—C14 | 119.22 (14) |
C5—N1—C1 | 116.90 (13) | O6—C13—O5 | 125.65 (15) |
N1—C1—C2 | 122.99 (15) | O6—C13—C8 | 118.45 (14) |
N1—C1—C7 | 117.01 (14) | O5—C13—C8 | 115.90 (14) |
C2—C1—C7 | 119.99 (14) | O7—C14—O8 | 126.73 (15) |
C3—C2—C1 | 119.31 (15) | O7—C14—C12 | 117.09 (14) |
C3—C2—H2C | 120.3 | O8—C14—C12 | 116.18 (14) |
C1—C2—H2C | 120.3 | C15—N3—H3B | 109.5 |
C2—C3—C4 | 118.32 (15) | C15—N3—H3C | 109.5 |
C2—C3—H3A | 120.8 | H3B—N3—H3C | 109.5 |
C4—C3—H3A | 120.8 | C15—N3—H3D | 109.5 |
C3—C4—C5 | 119.02 (15) | H3B—N3—H3D | 109.5 |
C3—C4—H4A | 120.5 | H3C—N3—H3D | 109.5 |
C5—C4—H4A | 120.5 | N3—C15—C16 | 112.99 (14) |
N1—C5—C4 | 123.36 (15) | N3—C15—H15A | 109.0 |
N1—C5—C6 | 118.79 (14) | C16—C15—H15A | 109.0 |
C4—C5—C6 | 117.85 (14) | N3—C15—H15B | 109.0 |
O2—C6—O1 | 125.56 (15) | C16—C15—H15B | 109.0 |
O2—C6—C5 | 119.01 (14) | H15A—C15—H15B | 107.8 |
O1—C6—C5 | 115.43 (13) | N4—C16—C17 | 110.23 (14) |
O4—C7—O3 | 125.45 (15) | N4—C16—C15 | 106.01 (13) |
O4—C7—C1 | 118.87 (14) | C17—C16—C15 | 115.19 (15) |
O3—C7—C1 | 115.66 (14) | N4—C16—H16A | 108.4 |
C13—O5—H5 | 106.7 | C17—C16—H16A | 108.4 |
C8—N2—C12 | 117.06 (14) | C15—C16—H16A | 108.4 |
N2—C8—C9 | 123.62 (15) | C16—C17—H17A | 109.5 |
N2—C8—C13 | 118.08 (14) | C16—C17—H17B | 109.5 |
C9—C8—C13 | 118.30 (14) | H17A—C17—H17B | 109.5 |
C10—C9—C8 | 118.53 (15) | C16—C17—H17C | 109.5 |
C10—C9—H9A | 120.7 | H17A—C17—H17C | 109.5 |
C8—C9—H9A | 120.7 | H17B—C17—H17C | 109.5 |
C11—C10—C9 | 118.47 (15) | C16—N4—H4B | 109.5 |
C11—C10—H10A | 120.8 | C16—N4—H4C | 109.5 |
C9—C10—H10A | 120.8 | H4B—N4—H4C | 109.5 |
C10—C11—C12 | 119.66 (15) | C16—N4—H4D | 109.5 |
C10—C11—H11A | 120.2 | H4B—N4—H4D | 109.5 |
C12—C11—H11A | 120.2 | H4C—N4—H4D | 109.5 |
N2—C12—C11 | 122.65 (15) | H1B—O1W—H1A | 113.3 |
N2—C12—C14 | 118.13 (14) | H2B—O2W—H2A | 106.8 |
C5—N1—C1—C2 | −1.5 (2) | C12—N2—C8—C13 | −179.63 (14) |
C5—N1—C1—C7 | 178.02 (14) | N2—C8—C9—C10 | −0.2 (2) |
N1—C1—C2—C3 | 2.7 (3) | C13—C8—C9—C10 | 179.40 (15) |
C7—C1—C2—C3 | −176.84 (15) | C8—C9—C10—C11 | 0.1 (2) |
C1—C2—C3—C4 | −0.9 (2) | C9—C10—C11—C12 | 0.2 (2) |
C2—C3—C4—C5 | −1.8 (2) | C8—N2—C12—C11 | 0.4 (2) |
C1—N1—C5—C4 | −1.4 (2) | C8—N2—C12—C14 | 179.70 (14) |
C1—N1—C5—C6 | 178.54 (14) | C10—C11—C12—N2 | −0.5 (2) |
C3—C4—C5—N1 | 3.1 (3) | C10—C11—C12—C14 | −179.77 (15) |
C3—C4—C5—C6 | −176.86 (15) | N2—C8—C13—O6 | 177.64 (15) |
N1—C5—C6—O2 | −178.03 (15) | C9—C8—C13—O6 | −2.0 (2) |
C4—C5—C6—O2 | 1.9 (2) | N2—C8—C13—O5 | −2.6 (2) |
N1—C5—C6—O1 | 1.7 (2) | C9—C8—C13—O5 | 177.79 (14) |
C4—C5—C6—O1 | −178.34 (14) | N2—C12—C14—O7 | 174.56 (15) |
N1—C1—C7—O4 | 175.02 (15) | C11—C12—C14—O7 | −6.1 (2) |
C2—C1—C7—O4 | −5.4 (2) | N2—C12—C14—O8 | −5.7 (2) |
N1—C1—C7—O3 | −6.2 (2) | C11—C12—C14—O8 | 173.67 (15) |
C2—C1—C7—O3 | 173.32 (15) | N3—C15—C16—N4 | −170.15 (13) |
C12—N2—C8—C9 | −0.1 (2) | N3—C15—C16—C17 | 67.7 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···O8i | 0.87 | 1.61 | 2.479 (2) | 175 |
O1W—H1A···O7ii | 0.87 | 1.78 | 2.649 (2) | 177 |
O1W—H1B···O2Wiii | 0.87 | 1.90 | 2.751 (2) | 166 |
O2W—H2A···O4iii | 0.87 | 2.00 | 2.855 (2) | 169 |
O2W—H2B···O4 | 0.87 | 1.94 | 2.776 (2) | 160 |
N3—H3B···N1iv | 0.91 | 2.16 | 2.971 (2) | 149 |
N3—H3C···O6v | 0.91 | 1.92 | 2.819 (2) | 172 |
N3—H3D···O1Wiii | 0.91 | 1.88 | 2.790 (2) | 176 |
N4—H4B···O1Wv | 0.91 | 1.97 | 2.854 (2) | 163 |
N4—H4C···N2vi | 0.91 | 2.13 | 3.017 (2) | 166 |
N4—H4D···O2vii | 0.91 | 2.01 | 2.884 (2) | 160 |
O5—H5···O3viii | 0.87 | 1.59 | 2.454 (2) | 178 |
C16—H16A···O5vi | 1.00 | 2.54 | 3.182 (2) | 122 |
C16—H16A···O6v | 1.00 | 2.58 | 3.222 (2) | 122 |
Symmetry codes: (i) x, y+1, z−1; (ii) x, y, z−1; (iii) −x+1, −y+1, −z+1; (iv) −x+1, −y+2, −z+1; (v) −x, −y+1, −z+1; (vi) x, y+1, z; (vii) x, y, z+1; (viii) x−1, y−1, z. |
Experimental details
Crystal data | |
Chemical formula | C3H12N22+·2C7H4NO4−·2(H2O) |
Mr | 444.40 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 100 |
a, b, c (Å) | 7.5587 (3), 11.0388 (5), 12.5821 (6) |
α, β, γ (°) | 98.533 (1), 99.844 (1), 106.410 (1) |
V (Å3) | 970.52 (7) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.13 |
Crystal size (mm) | 0.11 × 0.10 × 0.06 |
Data collection | |
Diffractometer | Bruker SMART APEXII diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.984, 0.993 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 10335, 4242, 3220 |
Rint | 0.033 |
(sin θ/λ)max (Å−1) | 0.639 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.040, 0.104, 1.04 |
No. of reflections | 4242 |
No. of parameters | 280 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.36, −0.34 |
Computer programs: APEX2 (Bruker, 2007), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···O8i | 0.87 | 1.61 | 2.479 (2) | 175 |
O1W—H1A···O7ii | 0.87 | 1.78 | 2.649 (2) | 177 |
O1W—H1B···O2Wiii | 0.87 | 1.90 | 2.751 (2) | 166 |
O2W—H2A···O4iii | 0.87 | 2.00 | 2.855 (2) | 169 |
O2W—H2B···O4 | 0.87 | 1.94 | 2.776 (2) | 160 |
N3—H3B···N1iv | 0.91 | 2.16 | 2.971 (2) | 149 |
N3—H3C···O6v | 0.91 | 1.92 | 2.819 (2) | 172 |
N3—H3D···O1Wiii | 0.91 | 1.88 | 2.790 (2) | 176 |
N4—H4B···O1Wv | 0.91 | 1.97 | 2.854 (2) | 163 |
N4—H4C···N2vi | 0.91 | 2.13 | 3.017 (2) | 166 |
N4—H4D···O2vii | 0.91 | 2.01 | 2.884 (2) | 160 |
O5—H5···O3viii | 0.87 | 1.59 | 2.454 (2) | 178 |
C16—H16A···O5vi | 1.00 | 2.54 | 3.182 (2) | 122 |
C16—H16A···O6v | 1.00 | 2.58 | 3.222 (2) | 122 |
Symmetry codes: (i) x, y+1, z−1; (ii) x, y, z−1; (iii) −x+1, −y+1, −z+1; (iv) −x+1, −y+2, −z+1; (v) −x, −y+1, −z+1; (vi) x, y+1, z; (vii) x, y, z+1; (viii) x−1, y−1, z. |
References
Aghabozorg, H., Ghadermazi, M. & Attar Gharamaleki, J. (2006). Acta Cryst. E62, o3174–o3176. Web of Science CSD CrossRef IUCr Journals Google Scholar
Aghabozorg, H., Ghadermazi, M. & Ramezanipour, F. (2006). Acta Cryst. E62, o1143–o1146. CSD CrossRef IUCr Journals Google Scholar
Aghabozorg, H., Ghadermazi, M., Sheshmani, S. & Attar Gharamaleki, J. (2007). Acta Cryst. E63, o2985–o2986. Web of Science CSD CrossRef IUCr Journals Google Scholar
Aghabozorg, H., Manteghi, F. & Sheshmani, S. (2008). J. Iran. Chem. Soc. In the press. Google Scholar
Bruker (2007). APEX2. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Sheldrick, G. M. (1996). SADABS. University of Göttingen, Germany. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Recently, we have defined a plan to prepare water soluble proton-transfer compounds as novel self assembled systems that can function as suitable ligands in the synthesis of metal complexes. In this regard, we have reported cases in which proton transfers from pyridine-2,6-dicarboxylic acid, pydcH2, and benzene-1,2,4,5-tetracarboxylic acid, btcH4, to propane-1,3-diamine (tn) and 1,10-phenanthroline, (phen). These resulted in the formation of some novel proton transfer compounds such as (pnH2)(pydc).(pydcH2).2.5H2O (Aghabozorg, Ghadermazi, Ramezanipour, 2006), (pnH2)2(btc).2H2O (Aghabozorg, et al., 2007) and (phenH)4(btcH3)2(btcH2) (Aghabozorg, Ghadermazi, Attar Gharamaleki, 2006). For more details and related literature see our recent review article (Aghabozorg, et al., 2008).
The molecular structure of the title compound is shown in Fig. 1. The crystal structure shows that a single proton from each of the carboxyl groups was transferred to the propane-1,2-diamine molecule (pn), rendering it a dication. Thus, the negative charges of two monoanionic 6-carboxypyridine-2-carboxylate groups, (pydcH)-, are neutralized by a doubly protonated propane-1,2-diammonium, (pnH2)2+, fragment.
An alternating π-π stacking interaction exits between the two aromatic rings of (pydcH)- with centroid-centroid distance of 3.6194 (9) Å [-x, 1 - y, 1 - z] (Fig. 2).
The C–O distances for this compound support the existence of both ionic and non-ionic acid moieties. The long bond distances of C6–O1 [1.2982 (19) Å] and C13–O5 [1.2936 (19) Å] imply the presence of neutral form of carboxylic acids, whereas the relatively short bond distances of C6–O2 [1.2239 (19) Å] and C13–O6 [1.2260 (19) Å] confirm the presence of double bonds.
A number of O—H···O, N—H···O, N–H···N and C—H···O hydrogen bonds, with D···A distances ranging from 2.454 (2) to 3.222 (2) Å, are observed in the crystal structure of the title compound (Table 1). The shortest hydrogen bond is O5—H5···O3viii (x - 1, y - 1, z) with D···A = 2.454 (2) Å, a strong interaction. Water molecules in this structure increase the number of hydrogen bonding interactions. Ion pairing, π-π stacking and van der Waals interactions are also effective in the packing of the crystal structure. These interactions result in the formation of a supramolecular structure (Fig. 3).