metal-organic compounds
Tetrakis(2,4,6-triamino-1,3,5-triazin-1-ium) tris(pyridine-2,6-dicarboxylato)calcate(II) hexahydrate
aFaculty of Chemistry, Tarbiat Moallem University, Tehran, Iran, and bDepartment of Chemistry, Islamic Azad University, Ardabil Branch, Ardabil, Iran
*Correspondence e-mail: haghabozorg@yahoo.com
The title compound, (C3H7N6)4[Ca(C7H3NO4)3]·6H2O or (tataH)4[Ca(pydc)3]·6H2O (where tata is 2,4,6-triamino-1,3,5-triazine and pydcH2 is pyridine-2,6-dicarboxylic acid), was obtained by reaction of Ca(NO3)2·4H2O with the proton-transfer compound (tataH)2(pydc) in aqueous solution. The [Ca(pydc)3]4− anion has twofold It is a nine-coordinate CaII complex with a distorted tricapped trigonal-prismatic coordination geometry. The structure also contains four tataH+ cations and six uncoordinated water molecules. There are extensive O—H⋯O, O—H⋯N, N—H⋯O, N—H⋯N and C—H⋯O hydrogen bonds in the crystal structure.
Related literature
For related literature, see: Aghabozorg et al. (2006); Aghabozorg, Attar Gharamaleki et al. (2008); Aghabozorg, Manteghi & Sheshmani (2008); Aghajani et al. (2006); Sharif et al. (2007).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2007); cell SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008) and Mercury (Macrae et al., 2006); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536808022873/om2249sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808022873/om2249Isup2.hkl
The proton-transfer compound, (tataH)2(pydc), was prepared by the reaction of pyridine-2,6-dicarboxylic acid (pydcH2) with 2,4,6-triamino-1,3,5-triazine (tata). The reaction between Ca(NO3)2.4H2O (118 mg, 0.5 mmol) in water (20 ml) and (tataH)2(pydc) (420 mg, 1.0 mmol) in water (20 ml), in 1:2 molar ratio gave a colorless compound after slow evaporation of the solvent at the room temperature.
The hydrogen atoms of NH groups and also H atoms of water molecule were found in difference Fourier synthesis. The hydrogen atoms of the H(C) atom positions were calculated. All hydrogen atoms were refined in isotropic approximation in riding model with the Uiso(H) parameters equal to 1.2 Ueq(Xi), where U(Xi) the equivalent thermal parameters of the carbon or nitrogen or oxygen atom to which corresponding H atom is bonded. Distances employed in the riding model are, N-H, 0.88 Å; O-H, 0.84 Å; C-H, 0.95 Å.
Data collection: APEX2 (Bruker, 2007); cell
SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008) and Mercury (Macrae et al., 2006); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).Fig. 1. The molecular structure of the title compound, with displacement ellipsoids drawn at the 50% probability level. The anion is located on a 2-fold axis and thus, the asymmetric unit contains one half anion, two cations and three water molecules. | |
Fig. 2. A view of the distorted tricapped trigonal prism around the CaII atom. | |
Fig. 3. Crystal packing with hydrogen bonds shown as dashed lines. |
(C3H7N6)4[Ca(C7H3NO4)3]·6H2O | F(000) = 2400 |
Mr = 1152.07 | Dx = 1.622 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 935 reflections |
a = 17.9605 (15) Å | θ = 3–29° |
b = 10.1672 (9) Å | µ = 0.24 mm−1 |
c = 25.922 (2) Å | T = 100 K |
β = 94.467 (2)° | Prism, colourless |
V = 4719.1 (7) Å3 | 0.30 × 0.20 × 0.20 mm |
Z = 4 |
Bruker SMART APEXII diffractometer | 6215 independent reflections |
Radiation source: fine-focus sealed tube | 4412 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.031 |
ω scans | θmax = 29.0°, θmin = 1.6° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −19→24 |
Tmin = 0.928, Tmax = 0.954 | k = −13→13 |
16983 measured reflections | l = −35→35 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.051 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.127 | H-atom parameters constrained |
S = 1.09 | w = 1/[σ2(Fo2) + (0.0392P)2 + 1P] where P = (Fo2 + 2Fc2)/3 |
6215 reflections | (Δ/σ)max < 0.001 |
365 parameters | Δρmax = 0.51 e Å−3 |
0 restraints | Δρmin = −0.77 e Å−3 |
(C3H7N6)4[Ca(C7H3NO4)3]·6H2O | V = 4719.1 (7) Å3 |
Mr = 1152.07 | Z = 4 |
Monoclinic, C2/c | Mo Kα radiation |
a = 17.9605 (15) Å | µ = 0.24 mm−1 |
b = 10.1672 (9) Å | T = 100 K |
c = 25.922 (2) Å | 0.30 × 0.20 × 0.20 mm |
β = 94.467 (2)° |
Bruker SMART APEXII diffractometer | 6215 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 4412 reflections with I > 2σ(I) |
Tmin = 0.928, Tmax = 0.954 | Rint = 0.031 |
16983 measured reflections |
R[F2 > 2σ(F2)] = 0.051 | 0 restraints |
wR(F2) = 0.127 | H-atom parameters constrained |
S = 1.09 | Δρmax = 0.51 e Å−3 |
6215 reflections | Δρmin = −0.77 e Å−3 |
365 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Ca1 | 0.0000 | 0.32225 (5) | 0.2500 | 0.01468 (13) | |
C1 | 0.17008 (12) | 0.2206 (2) | 0.21823 (8) | 0.0189 (4) | |
N1 | 0.12161 (10) | 0.19798 (16) | 0.25401 (6) | 0.0167 (3) | |
O1 | 0.08882 (8) | 0.38891 (14) | 0.18496 (5) | 0.0198 (3) | |
O1W | 0.25538 (11) | 0.3625 (2) | −0.08194 (7) | 0.0511 (6) | |
H1WB | 0.2800 | 0.3196 | −0.1025 | 0.061* | |
H1WA | 0.2150 | 0.3792 | −0.0992 | 0.061* | |
O2W | 0.20543 (11) | 0.3177 (2) | 0.38198 (7) | 0.0464 (5) | |
H2WB | 0.2093 | 0.3575 | 0.4105 | 0.056* | |
H2WA | 0.1704 | 0.3502 | 0.3627 | 0.056* | |
O2 | 0.18167 (9) | 0.32683 (15) | 0.13789 (6) | 0.0225 (3) | |
N2 | 0.0000 | 0.5723 (2) | 0.2500 | 0.0160 (5) | |
C2 | 0.23993 (13) | 0.1634 (3) | 0.21999 (9) | 0.0291 (5) | |
H2A | 0.2733 | 0.1824 | 0.1943 | 0.035* | |
O3W | 0.16530 (16) | 0.8783 (3) | 0.17830 (10) | 0.0743 (8) | |
H3WB | 0.2094 | 0.8677 | 0.1704 | 0.089* | |
H3WA | 0.1367 | 0.9132 | 0.1550 | 0.089* | |
N3 | 0.16153 (10) | 0.53273 (18) | 0.07458 (7) | 0.0222 (4) | |
H3N | 0.1666 | 0.4663 | 0.0963 | 0.027* | |
O3 | 0.02261 (8) | 0.15716 (14) | 0.32346 (5) | 0.0203 (3) | |
C3 | 0.26030 (14) | 0.0777 (3) | 0.26017 (9) | 0.0345 (6) | |
H3A | 0.3079 | 0.0366 | 0.2624 | 0.041* | |
O4 | 0.10324 (9) | 0.02965 (15) | 0.37134 (6) | 0.0252 (3) | |
C4 | 0.21035 (14) | 0.0525 (2) | 0.29714 (9) | 0.0292 (5) | |
H4A | 0.2230 | −0.0063 | 0.3249 | 0.035* | |
N4 | 0.18475 (10) | 0.62366 (18) | −0.00573 (7) | 0.0217 (4) | |
O5 | 0.08073 (9) | 0.43271 (14) | 0.32086 (6) | 0.0220 (3) | |
C5 | 0.14127 (12) | 0.1153 (2) | 0.29278 (8) | 0.0183 (4) | |
N5 | 0.12433 (10) | 0.75024 (17) | 0.05810 (7) | 0.0207 (4) | |
N6 | 0.22996 (11) | 0.41835 (19) | 0.01860 (8) | 0.0275 (4) | |
H6NA | 0.2338 | 0.3554 | 0.0419 | 0.033* | |
H6NB | 0.2477 | 0.4118 | −0.0120 | 0.033* | |
O6 | 0.11801 (9) | 0.61386 (15) | 0.36402 (6) | 0.0236 (3) | |
C6 | 0.14421 (12) | 0.3194 (2) | 0.17714 (7) | 0.0174 (4) | |
N7 | 0.13887 (10) | 0.83102 (18) | −0.02277 (7) | 0.0224 (4) | |
H7NA | 0.1188 | 0.9049 | −0.0129 | 0.027* | |
H7NB | 0.1526 | 0.8246 | −0.0545 | 0.027* | |
C7 | 0.08494 (12) | 0.09839 (19) | 0.33279 (8) | 0.0171 (4) | |
N8 | 0.09931 (11) | 0.64715 (19) | 0.13431 (7) | 0.0257 (4) | |
H8NA | 0.0972 | 0.5743 | 0.1525 | 0.031* | |
H8NB | 0.0923 | 0.7219 | 0.1503 | 0.031* | |
C8 | 0.04098 (11) | 0.6393 (2) | 0.28661 (8) | 0.0175 (4) | |
N9 | −0.02526 (10) | 0.21627 (17) | 0.41916 (6) | 0.0189 (4) | |
H9NA | −0.0085 | 0.2124 | 0.3882 | 0.023* | |
C9 | 0.04259 (14) | 0.7762 (2) | 0.28768 (9) | 0.0250 (5) | |
H9A | 0.0724 | 0.8215 | 0.3138 | 0.030* | |
C10 | 0.0000 | 0.8452 (3) | 0.2500 | 0.0301 (8) | |
H10A | 0.0000 | 0.9386 | 0.2500 | 0.036* | |
N10 | −0.03939 (10) | 0.32331 (17) | 0.49808 (6) | 0.0179 (4) | |
C11 | 0.08390 (11) | 0.5555 (2) | 0.32701 (8) | 0.0170 (4) | |
N11 | −0.07504 (10) | 0.09514 (17) | 0.48552 (7) | 0.0187 (4) | |
N12 | 0.01468 (10) | 0.42995 (18) | 0.43181 (7) | 0.0219 (4) | |
H11A | 0.0226 | 0.4986 | 0.4522 | 0.041 (8)* | |
H11B | 0.0304 | 0.4273 | 0.4005 | 0.033 (7)* | |
C12 | 0.15006 (12) | 0.7326 (2) | 0.01068 (8) | 0.0199 (4) | |
N13 | −0.08510 (11) | 0.19908 (18) | 0.56239 (7) | 0.0230 (4) | |
H13A | −0.0983 | 0.1240 | 0.5759 | 0.039 (8)* | |
H13B | −0.0842 | 0.2683 | 0.5828 | 0.029 (7)* | |
C13 | 0.12875 (12) | 0.6464 (2) | 0.08866 (8) | 0.0206 (4) | |
N14 | −0.06375 (11) | 0.00349 (19) | 0.40544 (7) | 0.0273 (4) | |
H14A | −0.0459 | 0.0126 | 0.3750 | 0.033 (7)* | |
H14B | −0.0830 | −0.0706 | 0.4158 | 0.036 (8)* | |
C14 | 0.19208 (12) | 0.5258 (2) | 0.02825 (8) | 0.0217 (4) | |
C15 | −0.01687 (11) | 0.3235 (2) | 0.45053 (8) | 0.0171 (4) | |
C16 | −0.06599 (12) | 0.2060 (2) | 0.51433 (8) | 0.0183 (4) | |
C17 | −0.05485 (11) | 0.1040 (2) | 0.43758 (8) | 0.0188 (4) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Ca1 | 0.0160 (3) | 0.0136 (3) | 0.0145 (3) | 0.000 | 0.0015 (2) | 0.000 |
C1 | 0.0193 (11) | 0.0216 (10) | 0.0160 (9) | 0.0004 (8) | 0.0023 (8) | 0.0019 (8) |
N1 | 0.0178 (9) | 0.0173 (8) | 0.0150 (8) | −0.0001 (7) | 0.0020 (6) | −0.0004 (6) |
O1 | 0.0198 (8) | 0.0186 (7) | 0.0215 (7) | 0.0008 (6) | 0.0044 (6) | 0.0036 (6) |
O1W | 0.0303 (10) | 0.0852 (16) | 0.0357 (10) | 0.0236 (10) | −0.0111 (8) | −0.0261 (10) |
O2W | 0.0510 (12) | 0.0472 (12) | 0.0378 (10) | 0.0222 (10) | −0.0160 (9) | −0.0154 (9) |
O2 | 0.0240 (8) | 0.0243 (8) | 0.0200 (7) | 0.0016 (6) | 0.0077 (6) | 0.0054 (6) |
N2 | 0.0160 (12) | 0.0156 (11) | 0.0168 (11) | 0.000 | 0.0044 (9) | 0.000 |
C2 | 0.0240 (12) | 0.0416 (14) | 0.0227 (11) | 0.0080 (11) | 0.0074 (9) | 0.0077 (10) |
O3W | 0.089 (2) | 0.0615 (16) | 0.0691 (17) | 0.0005 (15) | −0.0175 (14) | −0.0047 (13) |
N3 | 0.0229 (10) | 0.0190 (9) | 0.0250 (9) | 0.0023 (7) | 0.0041 (8) | 0.0065 (7) |
O3 | 0.0202 (8) | 0.0223 (8) | 0.0187 (7) | 0.0012 (6) | 0.0037 (6) | 0.0027 (6) |
C3 | 0.0242 (13) | 0.0500 (16) | 0.0300 (13) | 0.0167 (11) | 0.0075 (10) | 0.0120 (11) |
O4 | 0.0322 (9) | 0.0242 (8) | 0.0197 (7) | 0.0030 (7) | 0.0047 (6) | 0.0077 (6) |
C4 | 0.0303 (13) | 0.0347 (13) | 0.0227 (11) | 0.0120 (11) | 0.0038 (9) | 0.0097 (10) |
N4 | 0.0190 (9) | 0.0227 (9) | 0.0230 (9) | 0.0009 (7) | 0.0003 (7) | 0.0035 (7) |
O5 | 0.0249 (8) | 0.0161 (7) | 0.0238 (8) | −0.0007 (6) | −0.0048 (6) | −0.0004 (6) |
C5 | 0.0209 (11) | 0.0182 (10) | 0.0160 (9) | 0.0029 (8) | 0.0022 (8) | 0.0008 (7) |
N5 | 0.0205 (9) | 0.0192 (9) | 0.0220 (9) | −0.0017 (7) | 0.0004 (7) | 0.0015 (7) |
N6 | 0.0297 (11) | 0.0248 (10) | 0.0290 (10) | 0.0063 (8) | 0.0080 (8) | 0.0063 (8) |
O6 | 0.0250 (8) | 0.0246 (8) | 0.0205 (7) | −0.0011 (7) | −0.0031 (6) | −0.0052 (6) |
C6 | 0.0188 (10) | 0.0183 (10) | 0.0149 (9) | −0.0030 (8) | 0.0006 (8) | 0.0002 (7) |
N7 | 0.0233 (10) | 0.0222 (9) | 0.0217 (9) | 0.0012 (8) | 0.0006 (7) | 0.0037 (7) |
C7 | 0.0231 (11) | 0.0117 (9) | 0.0167 (9) | −0.0021 (8) | 0.0029 (8) | −0.0013 (7) |
N8 | 0.0339 (11) | 0.0198 (9) | 0.0241 (9) | 0.0005 (8) | 0.0065 (8) | 0.0028 (7) |
C8 | 0.0183 (10) | 0.0171 (9) | 0.0178 (9) | −0.0006 (8) | 0.0055 (8) | −0.0011 (7) |
N9 | 0.0219 (9) | 0.0207 (9) | 0.0147 (8) | 0.0016 (7) | 0.0050 (7) | 0.0009 (7) |
C9 | 0.0322 (13) | 0.0194 (10) | 0.0228 (11) | −0.0025 (9) | −0.0019 (9) | −0.0030 (8) |
C10 | 0.044 (2) | 0.0179 (15) | 0.0273 (17) | 0.000 | −0.0032 (15) | 0.000 |
N10 | 0.0215 (9) | 0.0158 (8) | 0.0167 (8) | 0.0008 (7) | 0.0032 (7) | 0.0012 (6) |
C11 | 0.0146 (10) | 0.0199 (10) | 0.0168 (9) | −0.0012 (8) | 0.0034 (7) | −0.0010 (7) |
N11 | 0.0197 (9) | 0.0173 (8) | 0.0193 (8) | −0.0011 (7) | 0.0038 (7) | −0.0011 (7) |
N12 | 0.0249 (10) | 0.0214 (9) | 0.0200 (9) | −0.0006 (8) | 0.0068 (7) | 0.0025 (7) |
C12 | 0.0144 (10) | 0.0228 (10) | 0.0217 (10) | −0.0031 (8) | −0.0035 (8) | 0.0027 (8) |
N13 | 0.0356 (11) | 0.0160 (9) | 0.0182 (8) | −0.0043 (8) | 0.0071 (8) | −0.0012 (7) |
C13 | 0.0185 (10) | 0.0201 (10) | 0.0227 (10) | −0.0027 (8) | −0.0004 (8) | 0.0012 (8) |
N14 | 0.0353 (11) | 0.0258 (10) | 0.0221 (9) | −0.0079 (9) | 0.0106 (8) | −0.0068 (8) |
C14 | 0.0152 (10) | 0.0234 (11) | 0.0265 (11) | −0.0008 (8) | 0.0009 (8) | 0.0033 (8) |
C15 | 0.0150 (10) | 0.0172 (9) | 0.0189 (9) | 0.0024 (8) | 0.0004 (7) | 0.0021 (8) |
C16 | 0.0170 (10) | 0.0183 (10) | 0.0197 (10) | 0.0016 (8) | 0.0014 (8) | 0.0009 (8) |
C17 | 0.0155 (10) | 0.0206 (10) | 0.0204 (10) | 0.0015 (8) | 0.0020 (8) | −0.0013 (8) |
Ca1—O1 | 2.5031 (14) | O5—C11 | 1.259 (2) |
Ca1—O1i | 2.5032 (14) | C5—C7 | 1.514 (3) |
Ca1—O5i | 2.5145 (15) | N5—C13 | 1.319 (3) |
Ca1—O5 | 2.5145 (15) | N5—C12 | 1.358 (3) |
Ca1—N1i | 2.5184 (18) | N6—C14 | 1.321 (3) |
Ca1—N1 | 2.5184 (18) | N6—H6NA | 0.8800 |
Ca1—N2 | 2.542 (2) | N6—H6NB | 0.8798 |
Ca1—O3i | 2.5472 (15) | O6—C11 | 1.248 (2) |
Ca1—O3 | 2.5472 (15) | N7—C12 | 1.329 (3) |
C1—N1 | 1.340 (3) | N7—H7NA | 0.8800 |
C1—C2 | 1.380 (3) | N7—H7NB | 0.8800 |
C1—C6 | 1.511 (3) | N8—C13 | 1.333 (3) |
N1—C5 | 1.337 (3) | N8—H8NA | 0.8800 |
O1—C6 | 1.250 (2) | N8—H8NB | 0.8800 |
O1W—H1WB | 0.8400 | C8—C9 | 1.393 (3) |
O1W—H1WA | 0.8400 | C8—C11 | 1.514 (3) |
O2W—H2WB | 0.8400 | N9—C15 | 1.362 (3) |
O2W—H2WA | 0.8400 | N9—C17 | 1.361 (3) |
O2—C6 | 1.265 (2) | N9—H9NA | 0.8800 |
N2—C8i | 1.340 (2) | C9—C10 | 1.384 (3) |
N2—C8 | 1.340 (2) | C9—H9A | 0.9500 |
C2—C3 | 1.385 (3) | C10—C9i | 1.384 (3) |
C2—H2A | 0.9500 | C10—H10A | 0.9500 |
O3W—H3WB | 0.8400 | N10—C15 | 1.327 (3) |
O3W—H3WA | 0.8401 | N10—C16 | 1.363 (3) |
N3—C13 | 1.360 (3) | N11—C17 | 1.324 (3) |
N3—C14 | 1.360 (3) | N11—C16 | 1.355 (3) |
N3—H3N | 0.8800 | N12—C15 | 1.330 (3) |
O3—C7 | 1.275 (3) | N12—H11A | 0.8801 |
C3—C4 | 1.386 (3) | N12—H11B | 0.8799 |
C3—H3A | 0.9500 | N13—C16 | 1.319 (3) |
O4—C7 | 1.243 (2) | N13—H13A | 0.8800 |
C4—C5 | 1.392 (3) | N13—H13B | 0.8799 |
C4—H4A | 0.9500 | N14—C17 | 1.320 (3) |
N4—C14 | 1.329 (3) | N14—H14A | 0.8800 |
N4—C12 | 1.356 (3) | N14—H14B | 0.8800 |
O1—Ca1—O1i | 148.58 (7) | N1—C5—C4 | 122.08 (19) |
O1—Ca1—O5i | 75.43 (5) | N1—C5—C7 | 115.77 (18) |
O1i—Ca1—O5i | 90.55 (5) | C4—C5—C7 | 122.11 (19) |
O1—Ca1—O5 | 90.55 (5) | C13—N5—C12 | 115.43 (19) |
O1i—Ca1—O5 | 75.43 (5) | C14—N6—H6NA | 119.0 |
O5i—Ca1—O5 | 126.94 (7) | C14—N6—H6NB | 117.5 |
O1—Ca1—N1i | 134.76 (5) | H6NA—N6—H6NB | 123.4 |
O1i—Ca1—N1i | 64.37 (5) | O1—C6—O2 | 125.19 (19) |
O5i—Ca1—N1i | 75.23 (5) | O1—C6—C1 | 117.84 (17) |
O5—Ca1—N1i | 134.68 (5) | O2—C6—C1 | 116.96 (18) |
O1—Ca1—N1 | 64.37 (5) | C12—N7—H7NA | 119.8 |
O1i—Ca1—N1 | 134.76 (5) | C12—N7—H7NB | 121.1 |
O5i—Ca1—N1 | 134.68 (5) | H7NA—N7—H7NB | 119.1 |
O5—Ca1—N1 | 75.23 (5) | O4—C7—O3 | 126.11 (19) |
N1i—Ca1—N1 | 119.78 (8) | O4—C7—C5 | 117.75 (19) |
O1—Ca1—N2 | 74.29 (4) | O3—C7—C5 | 116.14 (17) |
O1i—Ca1—N2 | 74.29 (4) | C13—N8—H8NA | 120.4 |
O5i—Ca1—N2 | 63.47 (4) | C13—N8—H8NB | 120.4 |
O5—Ca1—N2 | 63.47 (4) | H8NA—N8—H8NB | 117.4 |
N1i—Ca1—N2 | 120.11 (4) | N2—C8—C9 | 122.1 (2) |
N1—Ca1—N2 | 120.11 (4) | N2—C8—C11 | 115.19 (18) |
O1—Ca1—O3i | 75.39 (5) | C9—C8—C11 | 122.70 (19) |
O1i—Ca1—O3i | 127.53 (5) | C15—N9—C17 | 119.35 (17) |
O5i—Ca1—O3i | 72.48 (5) | C15—N9—H9NA | 123.4 |
O5—Ca1—O3i | 152.84 (5) | C17—N9—H9NA | 117.0 |
N1i—Ca1—O3i | 63.34 (5) | C10—C9—C8 | 118.9 (2) |
N1—Ca1—O3i | 77.73 (5) | C10—C9—H9A | 120.6 |
N2—Ca1—O3i | 131.22 (3) | C8—C9—H9A | 120.6 |
O1—Ca1—O3 | 127.53 (5) | C9i—C10—C9 | 119.1 (3) |
O1i—Ca1—O3 | 75.39 (5) | C9i—C10—H10A | 120.5 |
O5i—Ca1—O3 | 152.84 (5) | C9—C10—H10A | 120.5 |
O5—Ca1—O3 | 72.48 (5) | C15—N10—C16 | 115.35 (18) |
N1i—Ca1—O3 | 77.73 (5) | O6—C11—O5 | 125.73 (19) |
N1—Ca1—O3 | 63.34 (5) | O6—C11—C8 | 117.19 (18) |
N2—Ca1—O3 | 131.22 (3) | O5—C11—C8 | 117.06 (18) |
O3i—Ca1—O3 | 97.56 (7) | C17—N11—C16 | 115.51 (18) |
N1—C1—C2 | 122.86 (19) | C15—N12—H11A | 118.7 |
N1—C1—C6 | 114.91 (18) | C15—N12—H11B | 119.2 |
C2—C1—C6 | 122.16 (19) | H11A—N12—H11B | 121.9 |
C5—N1—C1 | 118.70 (18) | N7—C12—N4 | 117.41 (19) |
C5—N1—Ca1 | 121.61 (13) | N7—C12—N5 | 116.5 (2) |
C1—N1—Ca1 | 119.56 (13) | N4—C12—N5 | 126.05 (19) |
C6—O1—Ca1 | 120.86 (12) | C16—N13—H13A | 121.4 |
H1WB—O1W—H1WA | 104.1 | C16—N13—H13B | 122.1 |
H2WB—O2W—H2WA | 109.9 | H13A—N13—H13B | 116.5 |
C8i—N2—C8 | 118.9 (2) | N5—C13—N8 | 121.3 (2) |
C8i—N2—Ca1 | 120.53 (12) | N5—C13—N3 | 121.8 (2) |
C8—N2—Ca1 | 120.53 (12) | N8—C13—N3 | 116.96 (19) |
C3—C2—C1 | 118.4 (2) | C17—N14—H14A | 116.7 |
C3—C2—H2A | 120.8 | C17—N14—H14B | 120.1 |
C1—C2—H2A | 120.8 | H14A—N14—H14B | 123.0 |
H3WB—O3W—H3WA | 114.4 | N6—C14—N4 | 121.3 (2) |
C13—N3—C14 | 119.60 (18) | N6—C14—N3 | 117.3 (2) |
C13—N3—H3N | 120.4 | N4—C14—N3 | 121.4 (2) |
C14—N3—H3N | 119.8 | N10—C15—N12 | 120.64 (19) |
C7—O3—Ca1 | 122.48 (12) | N10—C15—N9 | 121.73 (18) |
C2—C3—C4 | 119.2 (2) | N12—C15—N9 | 117.63 (18) |
C2—C3—H3A | 120.4 | N13—C16—N11 | 116.54 (19) |
C4—C3—H3A | 120.4 | N13—C16—N10 | 117.51 (19) |
C3—C4—C5 | 118.7 (2) | N11—C16—N10 | 125.96 (18) |
C3—C4—H4A | 120.7 | N14—C17—N11 | 120.7 (2) |
C5—C4—H4A | 120.7 | N14—C17—N9 | 117.33 (19) |
C14—N4—C12 | 115.36 (18) | N11—C17—N9 | 121.95 (19) |
C11—O5—Ca1 | 123.58 (13) | ||
C2—C1—N1—C5 | −0.8 (3) | N1—Ca1—O5—C11 | 138.44 (17) |
C6—C1—N1—C5 | −177.72 (18) | N2—Ca1—O5—C11 | 3.08 (14) |
C2—C1—N1—Ca1 | 175.25 (18) | O3i—Ca1—O5—C11 | 132.90 (16) |
C6—C1—N1—Ca1 | −1.6 (2) | O3—Ca1—O5—C11 | −155.35 (17) |
O1—Ca1—N1—C5 | 171.11 (17) | C1—N1—C5—C4 | 0.2 (3) |
O1i—Ca1—N1—C5 | 22.09 (19) | Ca1—N1—C5—C4 | −175.81 (17) |
O5i—Ca1—N1—C5 | −158.97 (14) | C1—N1—C5—C7 | 177.82 (18) |
O5—Ca1—N1—C5 | 73.20 (15) | Ca1—N1—C5—C7 | 1.8 (2) |
N1i—Ca1—N1—C5 | −60.19 (14) | C3—C4—C5—N1 | 0.4 (4) |
N2—Ca1—N1—C5 | 119.81 (14) | C3—C4—C5—C7 | −177.1 (2) |
O3i—Ca1—N1—C5 | −109.38 (16) | Ca1—O1—C6—O2 | 162.52 (16) |
O3—Ca1—N1—C5 | −4.32 (14) | Ca1—O1—C6—C1 | −19.1 (2) |
O1—Ca1—N1—C1 | −4.88 (14) | N1—C1—C6—O1 | 13.5 (3) |
O1i—Ca1—N1—C1 | −153.89 (14) | C2—C1—C6—O1 | −163.4 (2) |
O5i—Ca1—N1—C1 | 25.05 (18) | N1—C1—C6—O2 | −167.97 (18) |
O5—Ca1—N1—C1 | −102.78 (15) | C2—C1—C6—O2 | 15.1 (3) |
N1i—Ca1—N1—C1 | 123.83 (16) | Ca1—O3—C7—O4 | 170.52 (16) |
N2—Ca1—N1—C1 | −56.17 (16) | Ca1—O3—C7—C5 | −9.4 (2) |
O3i—Ca1—N1—C1 | 74.64 (15) | N1—C5—C7—O4 | −175.02 (18) |
O3—Ca1—N1—C1 | 179.70 (17) | C4—C5—C7—O4 | 2.6 (3) |
O1i—Ca1—O1—C6 | 148.51 (15) | N1—C5—C7—O3 | 4.9 (3) |
O5i—Ca1—O1—C6 | −145.46 (15) | C4—C5—C7—O3 | −177.5 (2) |
O5—Ca1—O1—C6 | 86.33 (15) | C8i—N2—C8—C9 | −0.29 (15) |
N1i—Ca1—O1—C6 | −94.42 (16) | Ca1—N2—C8—C9 | 179.71 (15) |
N1—Ca1—O1—C6 | 13.04 (14) | C8i—N2—C8—C11 | 178.57 (19) |
N2—Ca1—O1—C6 | 148.51 (15) | Ca1—N2—C8—C11 | −1.43 (19) |
O3i—Ca1—O1—C6 | −70.16 (15) | N2—C8—C9—C10 | 0.6 (3) |
O3—Ca1—O1—C6 | 18.19 (17) | C11—C8—C9—C10 | −178.21 (17) |
O1—Ca1—N2—C8i | 80.76 (10) | C8—C9—C10—C9i | −0.27 (14) |
O1i—Ca1—N2—C8i | −99.24 (10) | Ca1—O5—C11—O6 | 173.48 (15) |
O5i—Ca1—N2—C8i | −0.53 (11) | Ca1—O5—C11—C8 | −5.0 (2) |
O5—Ca1—N2—C8i | 179.47 (11) | N2—C8—C11—O6 | −174.49 (16) |
N1i—Ca1—N2—C8i | −52.29 (11) | C9—C8—C11—O6 | 4.4 (3) |
N1—Ca1—N2—C8i | 127.71 (11) | N2—C8—C11—O5 | 4.1 (3) |
O3i—Ca1—N2—C8i | 27.26 (11) | C9—C8—C11—O5 | −177.1 (2) |
O3—Ca1—N2—C8i | −152.74 (11) | C14—N4—C12—N7 | −177.40 (19) |
O1—Ca1—N2—C8 | −99.24 (10) | C14—N4—C12—N5 | 1.4 (3) |
O1i—Ca1—N2—C8 | 80.76 (10) | C13—N5—C12—N7 | 172.95 (19) |
O5i—Ca1—N2—C8 | 179.47 (11) | C13—N5—C12—N4 | −5.9 (3) |
O5—Ca1—N2—C8 | −0.53 (11) | C12—N5—C13—N8 | −173.9 (2) |
N1i—Ca1—N2—C8 | 127.71 (11) | C12—N5—C13—N3 | 4.3 (3) |
N1—Ca1—N2—C8 | −52.29 (11) | C14—N3—C13—N5 | 1.3 (3) |
O3i—Ca1—N2—C8 | −152.74 (11) | C14—N3—C13—N8 | 179.6 (2) |
O3—Ca1—N2—C8 | 27.26 (11) | C12—N4—C14—N6 | −174.6 (2) |
N1—C1—C2—C3 | 0.8 (4) | C12—N4—C14—N3 | 4.7 (3) |
C6—C1—C2—C3 | 177.5 (2) | C13—N3—C14—N6 | 173.2 (2) |
O1—Ca1—O3—C7 | 2.23 (17) | C13—N3—C14—N4 | −6.2 (3) |
O1i—Ca1—O3—C7 | −153.52 (15) | C16—N10—C15—N12 | −175.54 (19) |
O5i—Ca1—O3—C7 | 145.59 (14) | C16—N10—C15—N9 | 4.7 (3) |
O5—Ca1—O3—C7 | −74.48 (15) | C17—N9—C15—N10 | −2.6 (3) |
N1i—Ca1—O3—C7 | 140.11 (15) | C17—N9—C15—N12 | 177.67 (18) |
N1—Ca1—O3—C7 | 7.43 (14) | C17—N11—C16—N13 | −179.39 (19) |
N2—Ca1—O3—C7 | −100.42 (14) | C17—N11—C16—N10 | 0.9 (3) |
O3i—Ca1—O3—C7 | 79.58 (14) | C15—N10—C16—N13 | 176.27 (19) |
C1—C2—C3—C4 | −0.2 (4) | C15—N10—C16—N11 | −4.0 (3) |
C2—C3—C4—C5 | −0.4 (4) | C16—N11—C17—N14 | −177.5 (2) |
O1—Ca1—O5—C11 | 75.17 (16) | C16—N11—C17—N9 | 1.6 (3) |
O1i—Ca1—O5—C11 | −76.38 (16) | C15—N9—C17—N14 | 178.31 (19) |
O5i—Ca1—O5—C11 | 3.08 (14) | C15—N9—C17—N11 | −0.8 (3) |
N1i—Ca1—O5—C11 | −104.08 (16) |
Symmetry code: (i) −x, y, −z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H1WB···O2ii | 0.84 | 1.91 | 2.710 (3) | 160 |
O1W—H1WA···O6iii | 0.84 | 1.92 | 2.751 (3) | 170 |
O2W—H2WB···N4iv | 0.84 | 2.26 | 3.022 (3) | 151 |
N3—H3N···O2 | 0.88 | 1.79 | 2.667 (2) | 176 |
O2W—H2WA···O5 | 0.84 | 2.05 | 2.888 (3) | 175 |
O3W—H3WB···O2Wv | 0.84 | 2.18 | 2.963 (3) | 154 |
O3W—H3WA···N14vi | 0.84 | 2.17 | 3.007 (3) | 180 |
N6—H6NA···O1Wii | 0.88 | 2.45 | 3.294 (3) | 162 |
N6—H6NB···O1W | 0.88 | 1.90 | 2.740 (3) | 160 |
N7—H7NA···N11vi | 0.88 | 2.22 | 3.103 (3) | 176 |
N7—H7NB···O2Wiii | 0.88 | 2.44 | 3.205 (3) | 146 |
N7—H7NB···O4iii | 0.88 | 2.53 | 3.111 (2) | 124 |
N8—H8NA···O1 | 0.88 | 2.07 | 2.948 (2) | 172 |
N12—H11A···N10vii | 0.88 | 2.23 | 3.109 (2) | 178 |
N12—H11B···O5 | 0.88 | 2.32 | 3.196 (2) | 175 |
N8—H8NB···O3W | 0.88 | 2.15 | 2.832 (4) | 134 |
N9—H9NA···O3 | 0.88 | 1.89 | 2.754 (2) | 165 |
N13—H13A···O4viii | 0.88 | 2.08 | 2.925 (2) | 160 |
N13—H13B···O6vii | 0.88 | 1.96 | 2.790 (2) | 157 |
N14—H14A···O3 | 0.88 | 2.39 | 3.143 (2) | 144 |
N14—H14B···N5ix | 0.88 | 2.10 | 2.978 (3) | 178 |
C4—H4A···O2x | 0.95 | 2.55 | 3.370 (3) | 145 |
Symmetry codes: (ii) −x+1/2, −y+1/2, −z; (iii) x, −y+1, z−1/2; (iv) x, −y+1, z+1/2; (v) −x+1/2, y+1/2, −z+1/2; (vi) −x, y+1, −z+1/2; (vii) −x, −y+1, −z+1; (viii) −x, −y, −z+1; (ix) −x, y−1, −z+1/2; (x) −x+1/2, y−1/2, −z+1/2. |
Experimental details
Crystal data | |
Chemical formula | (C3H7N6)4[Ca(C7H3NO4)3]·6H2O |
Mr | 1152.07 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 100 |
a, b, c (Å) | 17.9605 (15), 10.1672 (9), 25.922 (2) |
β (°) | 94.467 (2) |
V (Å3) | 4719.1 (7) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.24 |
Crystal size (mm) | 0.30 × 0.20 × 0.20 |
Data collection | |
Diffractometer | Bruker SMART APEXII diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.928, 0.954 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 16983, 6215, 4412 |
Rint | 0.031 |
(sin θ/λ)max (Å−1) | 0.682 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.051, 0.127, 1.09 |
No. of reflections | 6215 |
No. of parameters | 365 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.51, −0.77 |
Computer programs: APEX2 (Bruker, 2007), SAINT (Bruker, 2007), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008) and Mercury (Macrae et al., 2006).
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H1WB···O2i | 0.84 | 1.91 | 2.710 (3) | 160 |
O1W—H1WA···O6ii | 0.84 | 1.92 | 2.751 (3) | 170 |
O2W—H2WB···N4iii | 0.84 | 2.26 | 3.022 (3) | 151 |
N3—H3N···O2 | 0.88 | 1.79 | 2.667 (2) | 176 |
O2W—H2WA···O5 | 0.84 | 2.05 | 2.888 (3) | 175 |
O3W—H3WB···O2Wiv | 0.84 | 2.18 | 2.963 (3) | 154 |
O3W—H3WA···N14v | 0.84 | 2.17 | 3.007 (3) | 180 |
N6—H6NA···O1Wi | 0.88 | 2.45 | 3.294 (3) | 162 |
N6—H6NB···O1W | 0.88 | 1.90 | 2.740 (3) | 160 |
N7—H7NA···N11v | 0.88 | 2.22 | 3.103 (3) | 176 |
N7—H7NB···O2Wii | 0.88 | 2.44 | 3.205 (3) | 146 |
N7—H7NB···O4ii | 0.88 | 2.53 | 3.111 (2) | 124 |
N8—H8NA···O1 | 0.88 | 2.07 | 2.948 (2) | 172 |
N12—H11A···N10vi | 0.88 | 2.23 | 3.109 (2) | 178 |
N12—H11B···O5 | 0.88 | 2.32 | 3.196 (2) | 175 |
N8—H8NB···O3W | 0.88 | 2.15 | 2.832 (4) | 134 |
N9—H9NA···O3 | 0.88 | 1.89 | 2.754 (2) | 165 |
N13—H13A···O4vii | 0.88 | 2.08 | 2.925 (2) | 160 |
N13—H13B···O6vi | 0.88 | 1.96 | 2.790 (2) | 157 |
N14—H14A···O3 | 0.88 | 2.39 | 3.143 (2) | 144 |
N14—H14B···N5viii | 0.88 | 2.10 | 2.978 (3) | 178 |
C4—H4A···O2ix | 0.95 | 2.55 | 3.370 (3) | 145 |
Symmetry codes: (i) −x+1/2, −y+1/2, −z; (ii) x, −y+1, z−1/2; (iii) x, −y+1, z+1/2; (iv) −x+1/2, y+1/2, −z+1/2; (v) −x, y+1, −z+1/2; (vi) −x, −y+1, −z+1; (vii) −x, −y, −z+1; (viii) −x, y−1, −z+1/2; (ix) −x+1/2, y−1/2, −z+1/2. |
References
Aghabozorg, H., Aghajani, Z. & Sharif, M. A. (2006). Acta Cryst. E62, m1930–m1932. Web of Science CSD CrossRef IUCr Journals Google Scholar
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Aghabozorg, H., Manteghi, F. & Sheshmani, S. (2008). J. Iran. Chem. Soc. 5, 184-227. CrossRef CAS Google Scholar
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Macrae, C. F., Edgington, P. R., McCabe, P., Pidcock, E., Shields, G. P., Taylor, R., Towler, M. & van de Streek, J. (2006). J. Appl. Cryst. 39, 453–457. Web of Science CrossRef CAS IUCr Journals Google Scholar
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Hydrogen bonding plays a key role in chemical, catalytic and biochemical processes, as well as in supramolecular chemistry and crystal engineering. Recently we have reported the reaction between the proton-transfer compound, (tataH)2(pydc) with metal salts Co(NO3)2.6H2O, Bi(NO3)3.5H2O, Zn(NO3)2.4H2O and Cd(NO3)2.2H2O in a 2:1 molar ratio. These reactions lead to the formation of the (tataH)2[Co(H2O)6][Co(pydc)2]2.4H2O (Aghabozorg, Attar Gharamaleki et al., 2008), (tataH)n [Bi(pydc)2(H2O)]n(Sharif et al., 2007), (tataH)2 [Zn(pydc)2].10H2O (Aghajani et al., 2006) and (tataH)2 [Cd(pydc)2] (Aghabozorg, Aghajani et al., 2006) compounds respectively. For more details and related literature see our recent review article (Aghabozorg, Manteghi et al., 2008).
The structure of the title compound is shown in Fig.1. The anion has crystallographic 2-fold symmetry. The compound contains [Ca(pydc)3]4– anion, four (tataH)+ cations and six uncoordinated water molecules. In the [Ca(pydc)3]4– anions, CaII atom is nine-coordinated by three N atoms (N1, N1a and N2) and six O atoms (O1, O1a, O3, O3a, O5 and O5a) with the range of 2.5031 (14)–2.5472 (15)Å from the carboxylate groups of three (pydc)2– groups that act as tridentate ligands. The coordination geometry around the CaII atom is distorted tricapped trigonal prism (Fig.2). Three N atoms (N1, N1a and N2) occupying three cap positions and make a flat triangle with N1—Ca1—N1a: 119.78 (8)°, N1—Ca1—N2: 120.11 (4)° and N1a—Ca1—N2: 120.11 (4)° that the sum of these angles is 360.00° and six O atoms (O1, O1a, O3, O3a, O5 and O5a) forming the trigonal prism positions.
There are various hydrogen bonds such as O—H···O, O—H···N, N—H···O and N—H···N [in the range 2.667 (2)–3.294 (3) Å] in this structure (Fig.3) and C—H···O hydrogen bonds [with D···A 3.370 (3) Å] are also present (Table 1). These extensive hydrogen bonds between [Ca(pydc)3]4– anions, (tataH)+ cations and uncoordinated water molecules play an important role in stabilization of the crystal packing.