organic compounds
Methyl 3-O-α-D-mannopyranosyl β-D-glucopyranoside tetrahydrate
aDivision of Structural Chemistry, Arrhenius Laboratory, Stockholm University, SE-106 91 Stockholm, Sweden, and bDepartment of Organic Chemistry, Arrhenius Laboratory, Stockholm University, SE-106 91 Stockholm, Sweden
*Correspondence e-mail: lerik@struc.su.se
The title compound, C13H24O11·4H2O, forms extended hydrogen-bonded networks. These are present between but not as inter-residue hydrogen bonds, as well as to water molecules that in addition form an intermolecular chain of hydrogen bonds. The conformation of the disaccharide is described by the glycosidic torsion angles φH = −34° and ψH = −5°. Macroscopically, the disaccharide was observed to be hygroscopic.
Related literature
For related literature, see: Cremer & Pople (1975); Eriksson & Widmalm (2005); Eriksson et al. (1997, 2000, 2002); Färnbäck et al. (2003, 2008); Hassel & Ottar (1947); Huskens (2006); Jansson et al. (1990); Juaristi & Cuevas (1992); Odelius et al. (1995); Vishnyakov et al. (2000).
Experimental
Crystal data
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Refinement
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Data collection: EXPOSE (Stoe & Cie, 1997); cell CELL (Stoe & Cie, 1997); data reduction: INTEGRATE (Stoe & Cie, 1997); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Bergerhoff, 1996); software used to prepare material for publication: PLATON (Spek, 2003).
Supporting information
10.1107/S1600536808021454/om2251sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808021454/om2251Isup2.hkl
The synthesis of the title compound was described by Jansson et al. (1990). The disaccharide was crystallized by slow evaporation from a mixture of water, ethanol and acetonitrile (1:1:1) at ambient temperature. The
of each sugar residue is known from the starting compounds used in the synthesis.The hydrogen atoms were geometrically placed and constrained to ride on the parent atom. The C—H bond distances are 0.96 Å for CH3, 0.97 Å for CH2, 0.98 Å for CH. The Uiso(H) = 1.5 Ueq(C) for the CH3 and 1.2 Ueq(C) for all other H atoms. Due to the abscence of significant anomalous scatterers, the value of the
(Flack, 1983) was not meaningful, thus the 1707 Friedel equivalents were included in the merging process (MERG 3 in SHELXL97). The H atoms of the water molecule were located from difference density map and the d(O—H) were restrained to retain the previously known geometry of the water molecule. The hydrogen atoms of the water molecule were given Uiso(H) = 1.5Ueq(O).Data collection: EXPOSE (Stoe & Cie, 1997); cell
CELL (Stoe & Cie, 1997); data reduction: INTEGRATE (Stoe & Cie, 1997); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Bergerhoff, 1996); software used to prepare material for publication: PLATON (Spek, 2003).Fig. 1. Molecular structure of the title compound, showing 50% probability displacement ellipsoids and the atom numbering scheme. H atoms are shown as small spheres of arbitrary radii. | |
Fig. 2. Crystal packing of the title compound, showing slightly more than one unit cell, viewed along the b axis direction. The water molecules between the sugar residues are situated in channels along the b-direction. |
C13H24O11·4H2O | F(000) = 920 |
Mr = 428.39 | Dx = 1.462 Mg m−3 |
Monoclinic, C2 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: C 2y | Cell parameters from 1641 reflections |
a = 18.275 (3) Å | θ = 2.3–25.9° |
b = 7.7293 (12) Å | µ = 0.14 mm−1 |
c = 13.910 (3) Å | T = 291 K |
β = 97.87 (2)° | Block, colourless |
V = 1946.4 (6) Å3 | 0.40 × 0.30 × 0.15 mm |
Z = 4 |
Stoe IPDS diffractometer | 2017 independent reflections |
Radiation source: fine-focus sealed tube | 1706 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.037 |
Detector resolution: 6 pixels mm-1 | θmax = 25.9°, θmin = 2.3° |
ϕ scans | h = −22→22 |
Absorption correction: numerical (X-RED; Stoe & Cie, 1997) | k = −9→9 |
Tmin = 0.95, Tmax = 0.98 | l = −16→17 |
8973 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.025 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.059 | w = 1/[σ2(Fo2) + (0.0391P)2] where P = (Fo2 + 2Fc2)/3 |
S = 0.99 | (Δ/σ)max < 0.001 |
2017 reflections | Δρmax = 0.13 e Å−3 |
287 parameters | Δρmin = −0.14 e Å−3 |
9 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0054 (9) |
C13H24O11·4H2O | V = 1946.4 (6) Å3 |
Mr = 428.39 | Z = 4 |
Monoclinic, C2 | Mo Kα radiation |
a = 18.275 (3) Å | µ = 0.14 mm−1 |
b = 7.7293 (12) Å | T = 291 K |
c = 13.910 (3) Å | 0.40 × 0.30 × 0.15 mm |
β = 97.87 (2)° |
Stoe IPDS diffractometer | 2017 independent reflections |
Absorption correction: numerical (X-RED; Stoe & Cie, 1997) | 1706 reflections with I > 2σ(I) |
Tmin = 0.95, Tmax = 0.98 | Rint = 0.037 |
8973 measured reflections |
R[F2 > 2σ(F2)] = 0.025 | 9 restraints |
wR(F2) = 0.059 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.99 | Δρmax = 0.13 e Å−3 |
2017 reflections | Δρmin = −0.14 e Å−3 |
287 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1m | 0.16629 (10) | 0.4371 (3) | 0.18727 (14) | 0.0237 (4) | |
H1m | 0.1530 | 0.4374 | 0.2531 | 0.028* | |
C2m | 0.11852 (10) | 0.3031 (3) | 0.12731 (15) | 0.0253 (4) | |
H2m | 0.1312 | 0.1869 | 0.1525 | 0.030* | |
O2m | 0.04476 (7) | 0.3436 (2) | 0.14055 (11) | 0.0354 (4) | |
H2m1 | 0.0161 | 0.2829 | 0.1047 | 0.053* | |
C3m | 0.13077 (10) | 0.3138 (3) | 0.02186 (15) | 0.0231 (4) | |
H3m | 0.1812 | 0.2752 | 0.0169 | 0.028* | |
O3m | 0.08036 (8) | 0.2061 (2) | −0.03918 (11) | 0.0297 (3) | |
H3m1 | 0.0874 | 0.1046 | −0.0234 | 0.044* | |
C4m | 0.12196 (11) | 0.4985 (3) | −0.01623 (14) | 0.0246 (4) | |
H4m | 0.0703 | 0.5351 | −0.0193 | 0.030* | |
O4m | 0.14398 (9) | 0.5051 (2) | −0.11052 (11) | 0.0390 (4) | |
H4m1 | 0.1121 | 0.5547 | −0.1478 | 0.059* | |
C5m | 0.17184 (10) | 0.6189 (3) | 0.05093 (14) | 0.0251 (4) | |
H5m | 0.2233 | 0.5838 | 0.0501 | 0.030* | |
O5m | 0.15526 (7) | 0.60426 (18) | 0.14856 (9) | 0.0244 (3) | |
C6m | 0.16458 (11) | 0.8075 (3) | 0.02356 (17) | 0.0312 (5) | |
H6m1 | 0.1970 | 0.8747 | 0.0705 | 0.037* | |
H6m2 | 0.1809 | 0.8234 | −0.0394 | 0.037* | |
O6m | 0.09124 (8) | 0.8723 (2) | 0.01954 (13) | 0.0393 (4) | |
H6m | 0.0769 | 0.8585 | 0.0724 | 0.059* | |
C1g | 0.41344 (10) | 0.5571 (3) | 0.33556 (15) | 0.0276 (5) | |
H1g | 0.3968 | 0.6384 | 0.3821 | 0.033* | |
O1g | 0.47702 (7) | 0.6210 (2) | 0.30165 (10) | 0.0340 (4) | |
C2g | 0.35400 (10) | 0.5359 (3) | 0.24839 (15) | 0.0288 (5) | |
H2g | 0.3743 | 0.4734 | 0.1967 | 0.035* | |
O2g | 0.32707 (8) | 0.6996 (2) | 0.21340 (13) | 0.0441 (4) | |
H2g1 | 0.3564 | 0.7431 | 0.1808 | 0.066* | |
C3g | 0.28842 (10) | 0.4364 (3) | 0.27749 (14) | 0.0244 (4) | |
H3g | 0.2609 | 0.5128 | 0.3159 | 0.029* | |
O3g | 0.24034 (6) | 0.38309 (19) | 0.19220 (10) | 0.0268 (3) | |
C4g | 0.31150 (10) | 0.2760 (3) | 0.33673 (14) | 0.0251 (4) | |
H4g | 0.3316 | 0.1905 | 0.2954 | 0.030* | |
O4g | 0.24809 (7) | 0.2055 (2) | 0.37211 (11) | 0.0330 (4) | |
H4g1 | 0.2383 | 0.1108 | 0.3470 | 0.050* | |
C5g | 0.37025 (10) | 0.3225 (3) | 0.42143 (15) | 0.0278 (4) | |
H5g | 0.3501 | 0.4101 | 0.4615 | 0.033* | |
O5g | 0.43192 (7) | 0.3957 (2) | 0.38142 (11) | 0.0310 (3) | |
C6g | 0.39763 (12) | 0.1712 (3) | 0.48482 (17) | 0.0400 (6) | |
H6g1 | 0.4398 | 0.2075 | 0.5304 | 0.048* | |
H6g2 | 0.3590 | 0.1348 | 0.5218 | 0.048* | |
O6g | 0.41839 (9) | 0.0293 (2) | 0.42994 (15) | 0.0498 (5) | |
H6g | 0.3866 | −0.0460 | 0.4273 | 0.075* | |
C7 | 0.53302 (12) | 0.6785 (4) | 0.37756 (18) | 0.0435 (6) | |
H71 | 0.5146 | 0.7745 | 0.4109 | 0.065* | |
H72 | 0.5760 | 0.7139 | 0.3499 | 0.065* | |
H73 | 0.5459 | 0.5857 | 0.4225 | 0.065* | |
OW1 | 0.19300 (11) | 0.2972 (3) | 0.53816 (17) | 0.0612 (5) | |
H11 | 0.2119 (18) | 0.274 (5) | 0.480 (2) | 0.092* | |
H12 | 0.2364 (15) | 0.320 (5) | 0.585 (2) | 0.092* | |
OW2 | 0.28912 (11) | 0.3894 (3) | 0.70793 (15) | 0.0564 (5) | |
H21 | 0.3355 (13) | 0.361 (5) | 0.737 (3) | 0.085* | |
H22 | 0.2615 (18) | 0.332 (5) | 0.747 (3) | 0.085* | |
OW3 | 0.44168 (10) | 0.3766 (3) | 0.78999 (16) | 0.0577 (5) | |
H31 | 0.4706 (19) | 0.463 (4) | 0.773 (3) | 0.086* | |
H32 | 0.4659 (19) | 0.275 (4) | 0.787 (3) | 0.086* | |
OW4 | 0.52138 (11) | 0.0800 (3) | 0.75157 (14) | 0.0540 (5) | |
H41 | 0.5331 (19) | 0.061 (5) | 0.6924 (19) | 0.081* | |
H42 | 0.4990 (18) | −0.009 (4) | 0.776 (3) | 0.081* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1m | 0.0207 (8) | 0.0279 (11) | 0.0223 (10) | 0.0007 (8) | 0.0020 (7) | 0.0011 (8) |
C2m | 0.0215 (9) | 0.0253 (11) | 0.0285 (11) | −0.0011 (8) | 0.0014 (8) | 0.0026 (9) |
O2m | 0.0218 (6) | 0.0514 (10) | 0.0336 (8) | −0.0102 (7) | 0.0067 (6) | −0.0122 (7) |
C3m | 0.0188 (8) | 0.0236 (10) | 0.0264 (10) | 0.0030 (8) | 0.0015 (7) | −0.0035 (9) |
O3m | 0.0329 (7) | 0.0208 (7) | 0.0322 (8) | 0.0033 (6) | −0.0064 (6) | −0.0024 (6) |
C4m | 0.0258 (9) | 0.0262 (11) | 0.0218 (10) | 0.0034 (8) | 0.0026 (8) | 0.0008 (9) |
O4m | 0.0518 (9) | 0.0410 (10) | 0.0261 (8) | 0.0069 (8) | 0.0118 (7) | 0.0037 (7) |
C5m | 0.0227 (9) | 0.0258 (10) | 0.0273 (10) | 0.0015 (8) | 0.0049 (8) | 0.0029 (9) |
O5m | 0.0255 (7) | 0.0238 (7) | 0.0236 (7) | 0.0009 (6) | 0.0023 (5) | −0.0015 (6) |
C6m | 0.0305 (10) | 0.0253 (11) | 0.0377 (12) | −0.0014 (9) | 0.0045 (9) | 0.0040 (10) |
O6m | 0.0382 (8) | 0.0271 (8) | 0.0528 (10) | 0.0086 (7) | 0.0070 (7) | 0.0084 (8) |
C1g | 0.0230 (9) | 0.0328 (12) | 0.0277 (10) | −0.0026 (8) | 0.0059 (8) | 0.0006 (9) |
O1g | 0.0244 (7) | 0.0456 (9) | 0.0323 (8) | −0.0101 (7) | 0.0056 (6) | −0.0001 (7) |
C2g | 0.0243 (9) | 0.0347 (12) | 0.0276 (11) | −0.0026 (9) | 0.0046 (8) | 0.0048 (9) |
O2g | 0.0347 (8) | 0.0448 (10) | 0.0522 (11) | −0.0040 (8) | 0.0033 (7) | 0.0247 (9) |
C3g | 0.0220 (9) | 0.0288 (11) | 0.0214 (10) | −0.0010 (8) | −0.0002 (7) | −0.0002 (9) |
O3g | 0.0202 (6) | 0.0349 (8) | 0.0238 (7) | 0.0044 (6) | −0.0027 (5) | −0.0025 (7) |
C4g | 0.0218 (9) | 0.0272 (11) | 0.0263 (10) | −0.0003 (8) | 0.0029 (7) | 0.0021 (9) |
O4g | 0.0304 (7) | 0.0347 (9) | 0.0351 (9) | −0.0087 (7) | 0.0082 (6) | −0.0006 (8) |
C5g | 0.0239 (9) | 0.0328 (11) | 0.0263 (10) | −0.0007 (8) | 0.0023 (8) | 0.0020 (9) |
O5g | 0.0213 (6) | 0.0361 (8) | 0.0348 (8) | −0.0011 (6) | 0.0006 (6) | 0.0062 (7) |
C6g | 0.0327 (11) | 0.0499 (16) | 0.0357 (13) | 0.0002 (10) | −0.0017 (9) | 0.0120 (11) |
O6g | 0.0454 (9) | 0.0424 (10) | 0.0628 (12) | 0.0112 (8) | 0.0112 (9) | 0.0138 (9) |
C7 | 0.0316 (11) | 0.0531 (16) | 0.0444 (14) | −0.0129 (11) | 0.0001 (9) | −0.0019 (12) |
OW1 | 0.0568 (11) | 0.0722 (14) | 0.0581 (13) | −0.0008 (10) | 0.0205 (9) | −0.0107 (12) |
OW2 | 0.0614 (11) | 0.0459 (11) | 0.0601 (12) | 0.0062 (10) | 0.0014 (9) | 0.0157 (11) |
OW3 | 0.0507 (10) | 0.0498 (12) | 0.0775 (14) | −0.0013 (9) | 0.0270 (10) | 0.0152 (11) |
OW4 | 0.0581 (11) | 0.0581 (13) | 0.0474 (11) | −0.0042 (9) | 0.0128 (9) | 0.0088 (10) |
C1m—O5m | 1.403 (2) | C2g—C3g | 1.525 (3) |
C1m—O3g | 1.409 (2) | C2g—H2g | 0.9800 |
C1m—C2m | 1.527 (3) | O2g—H2g1 | 0.8200 |
C1m—H1m | 0.9800 | C3g—O3g | 1.437 (2) |
C2m—O2m | 1.420 (2) | C3g—C4g | 1.516 (3) |
C2m—C3m | 1.516 (3) | C3g—H3g | 0.9800 |
C2m—H2m | 0.9800 | C4g—O4g | 1.428 (2) |
O2m—H2m1 | 0.8200 | C4g—C5g | 1.524 (3) |
C3m—O3m | 1.431 (2) | C4g—H4g | 0.9800 |
C3m—C4m | 1.523 (3) | O4g—H4g1 | 0.8200 |
C3m—H3m | 0.9800 | C5g—O5g | 1.439 (2) |
O3m—H3m1 | 0.8200 | C5g—C6g | 1.508 (3) |
C4m—O4m | 1.425 (2) | C5g—H5g | 0.9800 |
C4m—C5m | 1.529 (3) | C6g—O6g | 1.417 (3) |
C4m—H4m | 0.9800 | C6g—H6g1 | 0.9700 |
O4m—H4m1 | 0.8200 | C6g—H6g2 | 0.9700 |
C5m—O5m | 1.436 (2) | O6g—H6g | 0.8200 |
C5m—C6m | 1.508 (3) | C7—H71 | 0.9600 |
C5m—H5m | 0.9800 | C7—H72 | 0.9600 |
C6m—O6m | 1.425 (3) | C7—H73 | 0.9600 |
C6m—H6m1 | 0.9700 | OW1—H11 | 0.94 (2) |
C6m—H6m2 | 0.9700 | OW1—H12 | 0.97 (2) |
O6m—H6m | 0.8200 | OW2—H21 | 0.92 (2) |
C1g—O1g | 1.402 (2) | OW2—H22 | 0.90 (2) |
C1g—O5g | 1.421 (3) | OW3—H31 | 0.91 (2) |
C1g—C2g | 1.522 (3) | OW3—H32 | 0.90 (2) |
C1g—H1g | 0.9800 | OW4—H41 | 0.89 (2) |
O1g—C7 | 1.437 (3) | OW4—H42 | 0.89 (2) |
C2g—O2g | 1.419 (3) | H1m—H3g | 2.12 |
O5m—C1m—O3g | 112.22 (16) | C1g—O1g—C7 | 113.67 (16) |
O5m—C1m—C2m | 111.93 (15) | O2g—C2g—C1g | 110.69 (18) |
O3g—C1m—C2m | 107.40 (16) | O2g—C2g—C3g | 107.01 (16) |
O5m—C1m—H1m | 108.4 | C1g—C2g—C3g | 110.13 (17) |
O3g—C1m—H1m | 108.4 | O2g—C2g—H2g | 109.7 |
C2m—C1m—H1m | 108.4 | C1g—C2g—H2g | 109.7 |
O2m—C2m—C3m | 112.45 (16) | C3g—C2g—H2g | 109.7 |
O2m—C2m—C1m | 105.16 (16) | C2g—O2g—H2g1 | 109.5 |
C3m—C2m—C1m | 110.02 (15) | O3g—C3g—C4g | 107.92 (16) |
O2m—C2m—H2m | 109.7 | O3g—C3g—C2g | 109.85 (16) |
C3m—C2m—H2m | 109.7 | C4g—C3g—C2g | 112.73 (16) |
C1m—C2m—H2m | 109.7 | O3g—C3g—H3g | 108.8 |
C2m—O2m—H2m1 | 109.5 | C4g—C3g—H3g | 108.8 |
O3m—C3m—C2m | 111.96 (16) | C2g—C3g—H3g | 108.8 |
O3m—C3m—C4m | 108.06 (15) | C1m—O3g—C3g | 115.46 (15) |
C2m—C3m—C4m | 111.41 (16) | O4g—C4g—C3g | 108.71 (15) |
O3m—C3m—H3m | 108.4 | O4g—C4g—C5g | 110.03 (16) |
C2m—C3m—H3m | 108.4 | C3g—C4g—C5g | 109.96 (16) |
C4m—C3m—H3m | 108.4 | O4g—C4g—H4g | 109.4 |
C3m—O3m—H3m1 | 109.5 | C3g—C4g—H4g | 109.4 |
O4m—C4m—C3m | 108.92 (16) | C5g—C4g—H4g | 109.4 |
O4m—C4m—C5m | 108.71 (16) | C4g—O4g—H4g1 | 109.5 |
C3m—C4m—C5m | 109.40 (15) | O5g—C5g—C6g | 108.43 (16) |
O4m—C4m—H4m | 109.9 | O5g—C5g—C4g | 107.44 (16) |
C3m—C4m—H4m | 109.9 | C6g—C5g—C4g | 114.28 (18) |
C5m—C4m—H4m | 109.9 | O5g—C5g—H5g | 108.9 |
C4m—O4m—H4m1 | 109.5 | C6g—C5g—H5g | 108.9 |
O5m—C5m—C6m | 107.01 (16) | C4g—C5g—H5g | 108.9 |
O5m—C5m—C4m | 110.16 (15) | C1g—O5g—C5g | 111.60 (14) |
C6m—C5m—C4m | 114.19 (17) | O6g—C6g—C5g | 112.14 (19) |
O5m—C5m—H5m | 108.4 | O6g—C6g—H6g1 | 109.2 |
C6m—C5m—H5m | 108.4 | C5g—C6g—H6g1 | 109.2 |
C4m—C5m—H5m | 108.4 | O6g—C6g—H6g2 | 109.2 |
C1m—O5m—C5m | 113.43 (15) | C5g—C6g—H6g2 | 109.2 |
O6m—C6m—C5m | 113.55 (17) | H6g1—C6g—H6g2 | 107.9 |
O6m—C6m—H6m1 | 108.9 | C6g—O6g—H6g | 109.5 |
C5m—C6m—H6m1 | 108.9 | O1g—C7—H71 | 109.5 |
O6m—C6m—H6m2 | 108.9 | O1g—C7—H72 | 109.5 |
C5m—C6m—H6m2 | 108.9 | H71—C7—H72 | 109.5 |
H6m1—C6m—H6m2 | 107.7 | O1g—C7—H73 | 109.5 |
C6m—O6m—H6m | 109.5 | H71—C7—H73 | 109.5 |
O1g—C1g—O5g | 107.66 (15) | H72—C7—H73 | 109.5 |
O1g—C1g—C2g | 107.69 (16) | H11—OW1—H12 | 105 (3) |
O5g—C1g—C2g | 111.29 (17) | H21—OW2—H22 | 100 (3) |
O1g—C1g—H1g | 110.0 | H31—OW3—H32 | 109 (3) |
O5g—C1g—H1g | 110.0 | H41—OW4—H42 | 114 (4) |
C2g—C1g—H1g | 110.0 | ||
O5m—C1m—C2m—O2m | −67.68 (19) | O1g—C1g—C2g—C3g | 169.66 (17) |
O3g—C1m—C2m—O2m | 168.72 (15) | O5g—C1g—C2g—C3g | 51.9 (2) |
O5m—C1m—C2m—C3m | 53.6 (2) | O2g—C2g—C3g—O3g | 72.5 (2) |
O3g—C1m—C2m—C3m | −70.0 (2) | C1g—C2g—C3g—O3g | −167.17 (16) |
O2m—C2m—C3m—O3m | −55.7 (2) | O2g—C2g—C3g—C4g | −167.15 (17) |
C1m—C2m—C3m—O3m | −172.58 (15) | C1g—C2g—C3g—C4g | −46.8 (2) |
O2m—C2m—C3m—C4m | 65.4 (2) | O5m—C1m—O3g—C3g | 85.18 (19) |
C1m—C2m—C3m—C4m | −51.4 (2) | C2m—C1m—O3g—C3g | −151.40 (15) |
O3m—C3m—C4m—O4m | −64.6 (2) | C4g—C3g—O3g—C1m | 112.63 (18) |
C2m—C3m—C4m—O4m | 172.00 (15) | C2g—C3g—O3g—C1m | −124.11 (18) |
O3m—C3m—C4m—C5m | 176.70 (14) | O3g—C3g—C4g—O4g | −66.67 (19) |
C2m—C3m—C4m—C5m | 53.31 (19) | C2g—C3g—C4g—O4g | 171.85 (17) |
O4m—C4m—C5m—O5m | −175.11 (16) | O3g—C3g—C4g—C5g | 172.82 (14) |
C3m—C4m—C5m—O5m | −56.29 (19) | C2g—C3g—C4g—C5g | 51.3 (2) |
O4m—C4m—C5m—C6m | 64.5 (2) | O4g—C4g—C5g—O5g | −178.89 (16) |
C3m—C4m—C5m—C6m | −176.72 (17) | C3g—C4g—C5g—O5g | −59.2 (2) |
O3g—C1m—O5m—C5m | 61.40 (19) | O4g—C4g—C5g—C6g | 60.8 (2) |
C2m—C1m—O5m—C5m | −59.44 (19) | C3g—C4g—C5g—C6g | −179.52 (18) |
C6m—C5m—O5m—C1m | −174.57 (16) | O1g—C1g—O5g—C5g | 178.17 (15) |
C4m—C5m—O5m—C1m | 60.76 (18) | C2g—C1g—O5g—C5g | −64.0 (2) |
O5m—C5m—C6m—O6m | −64.9 (2) | C6g—C5g—O5g—C1g | −169.21 (17) |
C4m—C5m—C6m—O6m | 57.2 (2) | C4g—C5g—O5g—C1g | 66.8 (2) |
O5g—C1g—O1g—C7 | −71.2 (2) | O5g—C5g—C6g—O6g | −69.7 (2) |
C2g—C1g—O1g—C7 | 168.7 (2) | C4g—C5g—C6g—O6g | 50.1 (2) |
O1g—C1g—C2g—O2g | −72.2 (2) | H1m—C1m—O3g—C3g | −34 |
O5g—C1g—C2g—O2g | 170.02 (16) | C1m—O3g—C3g—H3g | −5 |
D—H···A | D—H | H···A | D···A | D—H···A |
O2m—H2m1···O3mi | 0.82 | 1.96 | 2.732 (2) | 156 |
O3m—H3m1···O6mii | 0.82 | 1.89 | 2.705 (2) | 172 |
O4m—H4m1···OW4iii | 0.82 | 2.03 | 2.803 (2) | 158 |
O6m—H6m···OW3iv | 0.82 | 2.00 | 2.796 (2) | 166 |
O2g—H2g1···O4mv | 0.82 | 2.25 | 2.848 (2) | 130 |
O2g—H2g1···O3mv | 0.82 | 2.43 | 3.140 (2) | 145 |
O4g—H4g1···OW2vi | 0.82 | 1.91 | 2.733 (2) | 177 |
O6g—H6g···OW1vi | 0.82 | 2.00 | 2.794 (2) | 162 |
OW1—H11···O4g | 0.94 (2) | 1.80 (2) | 2.736 (2) | 174 (4) |
OW1—H12···OW2 | 0.97 (2) | 1.92 (3) | 2.834 (2) | 156 (2) |
OW2—H21···OW3 | 0.92 (2) | 1.98 (2) | 2.866 (2) | 161 (4) |
OW2—H22···O2gvi | 0.90 (3) | 2.06 (3) | 2.915 (2) | 159 (4) |
OW3—H31···O1gvii | 0.91 (3) | 1.94 (3) | 2.814 (2) | 163 (4) |
OW3—H32···OW4 | 0.90 (2) | 1.92 (2) | 2.807 (2) | 167 (4) |
OW4—H41···O6gvii | 0.89 (2) | 2.04 (2) | 2.916 (2) | 168 (3) |
OW4—H42···O2mvi | 0.89 (2) | 1.88 (3) | 2.747 (2) | 163 (4) |
Symmetry codes: (i) −x, y, −z; (ii) x, y−1, z; (iii) x−1/2, y+1/2, z−1; (iv) −x+1/2, y+1/2, −z+1; (v) −x+1/2, y+1/2, −z; (vi) −x+1/2, y−1/2, −z+1; (vii) −x+1, y, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C13H24O11·4H2O |
Mr | 428.39 |
Crystal system, space group | Monoclinic, C2 |
Temperature (K) | 291 |
a, b, c (Å) | 18.275 (3), 7.7293 (12), 13.910 (3) |
β (°) | 97.87 (2) |
V (Å3) | 1946.4 (6) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.14 |
Crystal size (mm) | 0.40 × 0.30 × 0.15 |
Data collection | |
Diffractometer | Stoe IPDS diffractometer |
Absorption correction | Numerical (X-RED; Stoe & Cie, 1997) |
Tmin, Tmax | 0.95, 0.98 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 8973, 2017, 1706 |
Rint | 0.037 |
(sin θ/λ)max (Å−1) | 0.613 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.025, 0.059, 0.99 |
No. of reflections | 2017 |
No. of parameters | 287 |
No. of restraints | 9 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.13, −0.14 |
Computer programs: EXPOSE (Stoe & Cie, 1997), CELL (Stoe & Cie, 1997), INTEGRATE (Stoe & Cie, 1997), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), DIAMOND (Bergerhoff, 1996), PLATON (Spek, 2003).
H1m—H3g | 2.12 | ||
H11—OW1—H12 | 105 (3) | H31—OW3—H32 | 109 (3) |
H21—OW2—H22 | 100 (3) | H41—OW4—H42 | 114 (4) |
O5m—C5m—C6m—O6m | −64.9 (2) | C4g—C3g—O3g—C1m | 112.63 (18) |
C4m—C5m—C6m—O6m | 57.2 (2) | C2g—C3g—O3g—C1m | −124.11 (18) |
O5g—C1g—O1g—C7 | −71.2 (2) | O5g—C5g—C6g—O6g | −69.7 (2) |
C2g—C1g—O1g—C7 | 168.7 (2) | C4g—C5g—C6g—O6g | 50.1 (2) |
O5m—C1m—O3g—C3g | 85.18 (19) | H1m—C1m—O3g—C3g | −34 |
C2m—C1m—O3g—C3g | −151.40 (15) | C1m—O3g—C3g—H3g | −5 |
D—H···A | D—H | H···A | D···A | D—H···A |
O2m—H2m1···O3mi | 0.82 | 1.962 | 2.732 (2) | 156 |
O3m—H3m1···O6mii | 0.82 | 1.890 | 2.705 (2) | 172 |
O4m—H4m1···OW4iii | 0.82 | 2.027 | 2.803 (2) | 158 |
O6m—H6m···OW3iv | 0.82 | 1.995 | 2.796 (2) | 166 |
O2g—H2g1···O4mv | 0.82 | 2.249 | 2.848 (2) | 130 |
O2g—H2g1···O3mv | 0.82 | 2.434 | 3.140 (2) | 145 |
O4g—H4g1···OW2vi | 0.82 | 1.913 | 2.733 (2) | 177 |
O6g—H6g···OW1vi | 0.82 | 2.002 | 2.794 (2) | 162 |
OW1—H11···O4g | 0.94 (2) | 1.80 (2) | 2.736 (2) | 174 (4) |
OW1—H12···OW2 | 0.97 (2) | 1.92 (3) | 2.834 (2) | 156 (2) |
OW2—H21···OW3 | 0.92 (2) | 1.98 (2) | 2.866 (2) | 161 (4) |
OW2—H22···O2gvi | 0.90 (3) | 2.06 (3) | 2.915 (2) | 159 (4) |
OW3—H31···O1gvii | 0.91 (3) | 1.94 (3) | 2.814 (2) | 163 (4) |
OW3—H32···OW4 | 0.90 (2) | 1.92 (2) | 2.807 (2) | 167 (4) |
OW4—H41···O6gvii | 0.89 (2) | 2.04 (2) | 2.916 (2) | 168 (3) |
OW4—H42···O2mvi | 0.89 (2) | 1.88 (3) | 2.747 (2) | 163 (4) |
Symmetry codes: (i) −x, y, −z; (ii) x, y−1, z; (iii) x−1/2, y+1/2, z−1; (iv) −x+1/2, y+1/2, −z+1; (v) −x+1/2, y+1/2, −z; (vi) −x+1/2, y−1/2, −z+1; (vii) −x+1, y, −z+1. |
Acknowledgements
This work was supported by a grant from the Swedish Research Council (VR).
References
Bergerhoff, G. (1996). DIAMOND. Bonn, Germany. Google Scholar
Cremer, D. & Pople, J. A. (1975). J. Am. Chem. Soc. 97, 1354–1358. CrossRef CAS Web of Science Google Scholar
Eriksson, L., Stenutz, R. & Widmalm, G. (1997). Acta Cryst. C53, 1105–1107. CSD CrossRef CAS Web of Science IUCr Journals Google Scholar
Eriksson, L., Stenutz, R. & Widmalm, G. (2000). Acta Cryst. C56, 702–704. CSD CrossRef CAS IUCr Journals Google Scholar
Eriksson, L., Stenutz, R. & Widmalm, G. (2002). Acta Cryst. C58, o328–o329. Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
Eriksson, L. & Widmalm, G. (2005). Acta Cryst. E61, o860–o862. Web of Science CSD CrossRef IUCr Journals Google Scholar
Färnbäck, M., Eriksson, L. & Widmalm, G. (2003). Acta Cryst. C59, o171–o173. Web of Science CSD CrossRef IUCr Journals Google Scholar
Färnbäck, M., Eriksson, L. & Widmalm, G. (2008). Acta Cryst. C64, o31–o32. Web of Science CSD CrossRef IUCr Journals Google Scholar
Hassel, O. & Ottar, B. (1947). Acta Chem. Scand. 1, 929–943. CrossRef CAS Web of Science Google Scholar
Huskens, J. (2006). Curr. Opin. Chem. Biol. 10, 537–543. Web of Science CrossRef PubMed CAS Google Scholar
Jansson, P.-E., Kenne, L., Persson, K. & Widmalm, G. (1990). J. Chem. Soc. Perkin Trans. 1, pp. 591–598. CrossRef Web of Science Google Scholar
Juaristi, E. & Cuevas, G. (1992). Tetrahedron, 48, 5019–5087. CrossRef CAS Web of Science Google Scholar
Odelius, M., Laaksonen, A. & Widmalm, G. (1995). J. Phys. Chem. 99, 12686–12692. CrossRef CAS Web of Science Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Spek, A. L. (2003). J. Appl. Cryst. 36, 7–13. Web of Science CrossRef CAS IUCr Journals Google Scholar
Stoe & Cie (1997). IPDS and X-RED. Stoe & CIE GmbH, Darmstadt, Germany. Google Scholar
Vishnyakov, A., Widmalm, G. & Laaksonen, A. (2000). Angew. Chem. Int. Ed. 39, 140–142. CrossRef CAS Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Carbohydrates in biological systems, in the case of N-linked glycans of glycoproteins the result of post-translational modifications, are of functional significance due to e.g. their influence on protein stability. Furthermore, highly specific epitopes are formed by oligosaccharides present as glycoconjugates. The information contents in carbohydrate structures are indeed very large as a consequence of the immense numbers of permutations possible by combining different linkages and anomeric configurations of the sugar residues. It is of particular importance that the often weak carbohydrate interactions function by resorting to multivalent interactions upon cell-cell recognition (Huskens, 2006).
The major degrees of freedom in an oligosaccharide are described by the torsion angles ϕH, ψH, and ω. For the title compound the two former are present at the glycosidic α-(1 → 3)-linkage with ϕH being defined by H1m—C1m—O3g—C3g and ψH by C1m—O3g—C3g—H3g. The ω torsion angle, defined by O5—C5—C6—O6, refers to the conformation of the hydroxymethyl group of each sugar residue. The structure is described as the exo-anomeric conformation with ϕH = -34°, which, as a result of stereoelectronic effects, is characteristic of sugars in a cyclic form (Fig. 1). For the title compound the presence of the endo-anomeric effect (Juaristi & Cuevas, 1992) is evident from the difference in C—O bond lengths at the anomeric positions of the α-D-Manp residue having the axial bond C1m—O3g = 1.409 (2) Å and the β-D-Glcp residue having the equatorial bond C1g—O1g = 1.402 (2) Å, i.e., the bond with the axial electronegative atom is longer than the corresponding equatorial one, in complete agreement with ab initio data of model compounds (Odelius et al., 1995). At the glycosidic linkage ψH = -5°, leading to an almost eclipsed conformation and as a result the inter-residue distance across the glycosidic linkage for the proton pair H1m—H3g becomes short, only 2.12 Å.
The conformations of the hydroxymethyl groups are described by one of the three rotamers, gauche-trans, gauche-gauche, or trans-gauche with respect to the orientation of C6—O6 to C5—O5 and to C5—C4, respectively. In the present case both the mannopyranosyl and the glucopyranosyl residues show the gg conformation for their hydroxymethyl groups with ω = -64.9 (2)° and ω = -69.7 (2)°, respectively. This conformation is one of the two anticipated rotamers for the monosaccharides in the title compound, since both have an equatorial hydroxyl group at C4, which precludes the tg rotamer as a result of a non-favorable 1,3-diaxial interaction known as the Hassel-Ottar effect (Hassel & Ottar, 1947).
The calculated Cremer & Pople (1975) parameters show that both the mannose and glucose rings are close to the expected chair conformation, i.e. 4C1. The parameters for the mannose ring are [Q=0.555 (2) Å, θ=3.0 (2) ° and ϕ=302 (3) °] and for the glucose ring [Q=0.575 (2) Å, θ=10.0 (2) ° and ϕ=327 (1) °].
The title compound was quite hygroscopic. This fact is consistent with the relatively high water content in the crystal of the title disaccharide. In our previous structural studies on disaccharide crystals the number of water molecules ranged from zero to three per disaccharide (Eriksson et al. 1997, 2000, 2002, 2005; Färnbäck et al. 2003, 2008). All hydroxyl groups and all H atoms of the four water molecules are hydrogen bond donors and the structure is stabilized by an elaborate hydrogen bond network. The four water molecules can be considered as lying in channels along the b-direction between the sugar residues as shown in Fig. 2. Previous conformational studies on the title compound that focused on solution patterns in binary aqueous solvent mixtures indicated that an inter-residue hydrogen bond was present between O6m as the donor atom and O2g as the acceptor atom (Vishnyakov et al. 2000). This was possible when the ω torsion angle of the mannosyl residue had the gt conformation. However, in the present crystal structure the exo-cyclic hydroxymethyl groups of the glucosyl residue as well as that in the mannosyl residue have the gg conformation, the latter of which precludes the intra-molecular hydrogen bond. Further analysis of the hydrogen bonding patterns showed that O6m acts as a donor to OW3. The O6g atom, on the other hand, acts as a donor to OW1, which acts as a donor to OW2, continued in a donor-acceptor relationship to OW3, and in an analogous way to OW4. Finally, the latter water molecule acts as a donor to the acceptor O6g in another molecule. Thus, the water-mediated chain starts from one glucosyl residue and ends at a symmetry related glucosyl residue. Along the 'chain of water molecules' various atoms of the sugar residues act as hydrogen bond donors and acceptors. The close proximity of O2g in one molecule and O3m and O4m in a symmetry related molecule at distances of 3.140 (2) Å and 2.848 (2) Å, respectively, indicate that a bifurcated hydrogen bond is present with O2g as the donor atom. The triangle formed by the three oxygen atoms is almost isosceles with an O3mv—O2g—O4mv [symmetry code (v): -x + 1/2,y + 1/2,-z] angle of 56.09 (4)°.