organic compounds
Ammonium 1-ammonioethane-1,1-diylbis(hydrogenphosphonate) dihydrate
aV. I. Vernadskii Institute of General and Inorganic Chemistry, Kyiv 03680, Ukraine
*Correspondence e-mail: bon@ionc.kiev.ua
The title compound, NH4+·C2H8NO6P2−·2H2O, was obtained by the reaction between 1-aminoethane-1,1-diyldiphosphonic acid and ammonium hydroxide (1:1) in an aqueous solution. The contains one anion with two H atoms transferred from the phosphonic acid groups to the amino group of the anion and to an ammonia molecule, giving an ammonium cation. The structure displays N—H⋯O and O—H⋯O hydrogen bonding, which creates a three-dimensional network.
Related literature
Diphosphonic acids are efficient drugs for the prevention of calcification and the inhibition bone resorption (Tromelin et al., 1986, Matczak-Jon & Videnova-Adrabinska, 2005) and are used in the treatment of Pagets disease, osteoporosis and tumoral osteolysis (Szabo et al., 2002). For related structures, see: Bruckmann et al. (1999); Olive et al. (2000); Coiro et al. (1989). For bond-length data, see: Allen et al. (1987).
Experimental
Crystal data
|
Refinement
|
Data collection: APEX2 (Bruker, 2005); cell SAINT (Bruker, 2005); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2003).
Supporting information
10.1107/S1600536808037045/rk2118sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808037045/rk2118Isup2.hkl
The title compound was obtained by the reaction of 1-aminoethane-1,1-diyldiphosphonic acid and ammonium hydroxide (1:1) in the aqueous solution. The solution was left at room temperature. Colourless crystals of the title compound were obtained after 1 day staying.
All H atoms bonded to O and N atoms were located in a difference map. Other H atoms bonded to C were positioned geometrically and refined using a riding model with C–H = 0.98 Å for CH3 with Uiso(H) = 1.5Ueq(C).
Data collection: APEX2 (Bruker, 2005); cell
SAINT (Bruker, 2005); data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2003).Fig. 1. The asymmetric unit of title compound with the atom numbering scheme. The displacement ellipsoids are shown at 50% probability level. H atoms are presented as a small spheres of arbitrary radius. | |
Fig. 2. Crystal packing of title compound, projection along b axis. Dashed lines indicate hydrogen bonds. |
H4N+·C2H8NO6P2−·2H2O | F(000) = 544 |
Mr = 258.11 | Dx = 1.659 Mg m−3 |
Monoclinic, P21/c | Melting point: 511 K |
Hall symbol: -P 2ybc | Mo Kα radiation, λ = 0.71073 Å |
a = 8.8922 (3) Å | Cell parameters from 4102 reflections |
b = 6.9390 (3) Å | θ = 2.4–26.4° |
c = 18.9576 (8) Å | µ = 0.45 mm−1 |
β = 117.957 (2)° | T = 173 K |
V = 1033.23 (7) Å3 | Needle, colourless |
Z = 4 | 0.23 × 0.19 × 0.09 mm |
Bruker SMART APEXII CCD area-detector diffractometer | 2126 independent reflections |
Radiation source: Fine-focus sealed tube | 1710 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.057 |
ϕ and ω scans | θmax = 26.5°, θmin = 2.4° |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | h = −11→11 |
Tmin = 0.906, Tmax = 0.963 | k = −8→8 |
14152 measured reflections | l = −23→23 |
Refinement on F2 | Primary atom site location: Direct |
Least-squares matrix: Full | Secondary atom site location: Difmap |
R[F2 > 2σ(F2)] = 0.033 | Hydrogen site location: Geom |
wR(F2) = 0.074 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.06 | w = 1/[σ2(Fo2) + (0.0326P)2 + 0.4969P] where P = (Fo2 + 2Fc2)/3 |
2126 reflections | (Δ/σ)max = 0.001 |
180 parameters | Δρmax = 0.50 e Å−3 |
2 restraints | Δρmin = −0.42 e Å−3 |
H4N+·C2H8NO6P2−·2H2O | V = 1033.23 (7) Å3 |
Mr = 258.11 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 8.8922 (3) Å | µ = 0.45 mm−1 |
b = 6.9390 (3) Å | T = 173 K |
c = 18.9576 (8) Å | 0.23 × 0.19 × 0.09 mm |
β = 117.957 (2)° |
Bruker SMART APEXII CCD area-detector diffractometer | 2126 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | 1710 reflections with I > 2σ(I) |
Tmin = 0.906, Tmax = 0.963 | Rint = 0.057 |
14152 measured reflections |
R[F2 > 2σ(F2)] = 0.033 | 2 restraints |
wR(F2) = 0.074 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.06 | Δρmax = 0.50 e Å−3 |
2126 reflections | Δρmin = −0.42 e Å−3 |
180 parameters |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
P1 | 0.45684 (7) | 0.78215 (7) | 0.83905 (3) | 0.00967 (14) | |
P2 | 0.75545 (7) | 0.49061 (7) | 0.90274 (3) | 0.00998 (14) | |
C1 | 0.6842 (3) | 0.7385 (3) | 0.86839 (12) | 0.0102 (4) | |
C2 | 0.7977 (3) | 0.8851 (3) | 0.93146 (13) | 0.0151 (5) | |
H2A | 0.9172 | 0.8604 | 0.9460 | 0.023* | |
H2B | 0.7816 | 0.8730 | 0.9790 | 0.023* | |
H2C | 0.7668 | 1.0157 | 0.9097 | 0.023* | |
N1 | 0.7091 (2) | 0.7652 (3) | 0.79539 (11) | 0.0110 (4) | |
N2 | 0.4118 (3) | 0.2940 (3) | 0.92879 (12) | 0.0156 (4) | |
O1 | 0.41873 (18) | 0.6941 (2) | 0.90108 (8) | 0.0136 (3) | |
O2 | 0.42601 (18) | 0.99358 (19) | 0.82470 (8) | 0.0138 (3) | |
O3 | 0.35764 (18) | 0.6661 (2) | 0.75879 (9) | 0.0118 (3) | |
O4 | 0.61946 (17) | 0.3541 (2) | 0.84970 (8) | 0.0127 (3) | |
O5 | 0.92422 (18) | 0.4672 (2) | 0.90282 (8) | 0.0137 (3) | |
O6 | 0.7742 (2) | 0.4803 (2) | 0.98869 (9) | 0.0142 (3) | |
H3O | 0.366 (3) | 0.724 (4) | 0.7255 (16) | 0.033 (8)* | |
H6O | 0.873 (4) | 0.492 (4) | 1.0228 (18) | 0.044 (9)* | |
H11N | 0.653 (3) | 0.669 (4) | 0.7568 (15) | 0.022 (6)* | |
H12N | 0.822 (3) | 0.761 (3) | 0.8110 (14) | 0.016 (6)* | |
H13N | 0.672 (3) | 0.878 (4) | 0.7751 (14) | 0.019 (7)* | |
H21N | 0.303 (4) | 0.265 (4) | 0.9075 (17) | 0.036 (8)* | |
H22N | 0.453 (3) | 0.222 (4) | 0.9061 (16) | 0.028 (8)* | |
H23N | 0.418 (3) | 0.422 (5) | 0.9160 (17) | 0.039 (8)* | |
H24N | 0.463 (3) | 0.275 (3) | 0.9819 (15) | 0.013 (6)* | |
O7 | 0.0562 (2) | 0.2189 (3) | 0.83327 (12) | 0.0225 (4) | |
O8 | −0.0558 (2) | 0.3200 (3) | 0.67241 (11) | 0.0235 (4) | |
H71O | 0.019 (4) | 0.249 (4) | 0.786 (2) | 0.042 (9)* | |
H72O | 0.004 (3) | 0.278 (4) | 0.8504 (16) | 0.025 (8)* | |
H81O | −0.145 (3) | 0.279 (4) | 0.6455 (15) | 0.034 (9)* | |
H82O | −0.064 (4) | 0.431 (3) | 0.668 (2) | 0.063 (12)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
P1 | 0.0092 (3) | 0.0081 (3) | 0.0112 (3) | 0.0005 (2) | 0.0044 (2) | 0.0006 (2) |
P2 | 0.0099 (3) | 0.0091 (3) | 0.0099 (3) | 0.0006 (2) | 0.0038 (2) | 0.0007 (2) |
C1 | 0.0101 (10) | 0.0095 (10) | 0.0110 (10) | −0.0006 (8) | 0.0049 (8) | 0.0002 (8) |
C2 | 0.0152 (11) | 0.0123 (11) | 0.0167 (11) | −0.0028 (9) | 0.0065 (9) | −0.0034 (9) |
N1 | 0.0104 (10) | 0.0097 (9) | 0.0125 (9) | 0.0006 (8) | 0.0051 (8) | 0.0019 (8) |
N2 | 0.0169 (11) | 0.0169 (11) | 0.0144 (11) | −0.0005 (9) | 0.0084 (9) | −0.0014 (8) |
O1 | 0.0138 (8) | 0.0141 (8) | 0.0144 (8) | 0.0004 (6) | 0.0078 (6) | 0.0025 (6) |
O2 | 0.0155 (8) | 0.0104 (7) | 0.0152 (7) | 0.0010 (6) | 0.0069 (6) | 0.0004 (6) |
O3 | 0.0130 (8) | 0.0103 (7) | 0.0108 (7) | −0.0015 (6) | 0.0044 (6) | 0.0010 (6) |
O4 | 0.0131 (8) | 0.0100 (7) | 0.0142 (7) | −0.0009 (6) | 0.0058 (6) | −0.0007 (6) |
O5 | 0.0117 (8) | 0.0144 (8) | 0.0141 (7) | 0.0018 (6) | 0.0052 (6) | −0.0001 (6) |
O6 | 0.0107 (8) | 0.0194 (8) | 0.0114 (7) | 0.0008 (6) | 0.0042 (7) | 0.0014 (6) |
O7 | 0.0173 (9) | 0.0237 (9) | 0.0262 (10) | 0.0030 (7) | 0.0100 (8) | −0.0056 (8) |
O8 | 0.0164 (10) | 0.0216 (10) | 0.0324 (10) | 0.0009 (8) | 0.0115 (9) | −0.0013 (8) |
P1—O2 | 1.4939 (14) | N1—H11N | 0.94 (3) |
P1—O1 | 1.4982 (14) | N1—H12N | 0.90 (3) |
P1—O3 | 1.5760 (15) | N1—H13N | 0.87 (3) |
P1—C1 | 1.853 (2) | N2—H21N | 0.88 (3) |
P2—O4 | 1.4933 (15) | N2—H22N | 0.85 (3) |
P2—O5 | 1.5088 (15) | N2—H23N | 0.93 (3) |
P2—O6 | 1.5598 (15) | N2—H24N | 0.90 (2) |
P2—C1 | 1.843 (2) | O3—H3O | 0.78 (3) |
C1—N1 | 1.512 (3) | O6—H6O | 0.81 (3) |
C1—C2 | 1.534 (3) | O7—H71O | 0.83 (3) |
C2—H2A | 0.9800 | O7—H72O | 0.80 (3) |
C2—H2B | 0.9800 | O8—H81O | 0.768 (17) |
C2—H2C | 0.9800 | O8—H82O | 0.775 (18) |
O2—P1—O1 | 116.99 (8) | H2A—C2—H2B | 109.5 |
O2—P1—O3 | 110.75 (8) | C1—C2—H2C | 109.5 |
O1—P1—O3 | 108.61 (9) | H2A—C2—H2C | 109.5 |
O2—P1—C1 | 107.25 (9) | H2B—C2—H2C | 109.5 |
O1—P1—C1 | 108.31 (9) | C1—N1—H11N | 111.7 (15) |
O3—P1—C1 | 104.13 (9) | C1—N1—H12N | 108.2 (15) |
O4—P2—O5 | 115.05 (8) | H11N—N1—H12N | 110 (2) |
O4—P2—O6 | 109.31 (8) | C1—N1—H13N | 109.0 (15) |
O5—P2—O6 | 112.01 (8) | H11N—N1—H13N | 110 (2) |
O4—P2—C1 | 108.55 (9) | H12N—N1—H13N | 108 (2) |
O5—P2—C1 | 106.13 (9) | H21N—N2—H22N | 106 (3) |
O6—P2—C1 | 105.23 (9) | H21N—N2—H23N | 107 (2) |
N1—C1—C2 | 107.87 (16) | H22N—N2—H23N | 110 (3) |
N1—C1—P2 | 105.33 (13) | H21N—N2—H24N | 110 (2) |
C2—C1—P2 | 110.63 (14) | H22N—N2—H24N | 112 (2) |
N1—C1—P1 | 108.22 (14) | H23N—N2—H24N | 112 (2) |
C2—C1—P1 | 110.60 (14) | P1—O3—H3O | 107 (2) |
P2—C1—P1 | 113.86 (10) | P2—O6—H6O | 112 (2) |
C1—C2—H2A | 109.5 | H71O—O7—H72O | 108 (3) |
C1—C2—H2B | 109.5 | H81O—O8—H82O | 106 (3) |
O4—P2—C1—N1 | −77.19 (14) | O2—P1—C1—N1 | −71.57 (14) |
O5—P2—C1—N1 | 47.00 (15) | O1—P1—C1—N1 | 161.33 (13) |
O6—P2—C1—N1 | 165.88 (13) | O3—P1—C1—N1 | 45.86 (15) |
O4—P2—C1—C2 | 166.50 (13) | O2—P1—C1—C2 | 46.40 (16) |
O5—P2—C1—C2 | −69.31 (15) | O1—P1—C1—C2 | −80.71 (15) |
O6—P2—C1—C2 | 49.58 (16) | O3—P1—C1—C2 | 163.82 (14) |
O4—P2—C1—P1 | 41.22 (13) | O2—P1—C1—P2 | 171.69 (10) |
O5—P2—C1—P1 | 165.41 (10) | O1—P1—C1—P2 | 44.58 (13) |
O6—P2—C1—P1 | −75.71 (12) | O3—P1—C1—P2 | −70.88 (12) |
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3O···O4i | 0.78 (3) | 1.74 (3) | 2.523 (2) | 179 (3) |
O6—H6O···O5ii | 0.81 (3) | 1.71 (3) | 2.526 (2) | 175 (3) |
N1—H11N···O2iii | 0.94 (3) | 1.83 (3) | 2.759 (2) | 169 (2) |
N1—H12N···O8i | 0.90 (3) | 2.00 (3) | 2.873 (3) | 164 (2) |
N1—H13N···O3i | 0.87 (3) | 2.08 (3) | 2.928 (2) | 167 (2) |
N2—H21N···O7 | 0.88 (3) | 2.00 (3) | 2.860 (3) | 165 (3) |
N2—H22N···O2iv | 0.85 (3) | 2.14 (3) | 2.914 (3) | 151 (2) |
N2—H23N···O1 | 0.93 (3) | 1.91 (3) | 2.832 (3) | 171 (3) |
N2—H24N···O1v | 0.90 (2) | 1.97 (3) | 2.850 (3) | 165 (2) |
O7—H71O···O8 | 0.83 (3) | 1.99 (3) | 2.817 (3) | 177 (3) |
O7—H72O···O5vi | 0.80 (3) | 1.97 (3) | 2.745 (2) | 165 (3) |
O8—H81O···O1vii | 0.77 (2) | 2.24 (2) | 2.984 (2) | 162 (3) |
O8—H82O···O7viii | 0.78 (2) | 2.00 (2) | 2.770 (3) | 173 (4) |
Symmetry codes: (i) −x+1, y+1/2, −z+3/2; (ii) −x+2, −y+1, −z+2; (iii) −x+1, y−1/2, −z+3/2; (iv) x, y−1, z; (v) −x+1, −y+1, −z+2; (vi) x−1, y, z; (vii) −x, y−1/2, −z+3/2; (viii) −x, y+1/2, −z+3/2. |
Experimental details
Crystal data | |
Chemical formula | H4N+·C2H8NO6P2−·2H2O |
Mr | 258.11 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 173 |
a, b, c (Å) | 8.8922 (3), 6.9390 (3), 18.9576 (8) |
β (°) | 117.957 (2) |
V (Å3) | 1033.23 (7) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.45 |
Crystal size (mm) | 0.23 × 0.19 × 0.09 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2005) |
Tmin, Tmax | 0.906, 0.963 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 14152, 2126, 1710 |
Rint | 0.057 |
(sin θ/λ)max (Å−1) | 0.627 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.033, 0.074, 1.06 |
No. of reflections | 2126 |
No. of parameters | 180 |
No. of restraints | 2 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.50, −0.42 |
Computer programs: APEX2 (Bruker, 2005), SAINT (Bruker, 2005), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2003).
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3O···O4i | 0.78 (3) | 1.74 (3) | 2.523 (2) | 179 (3) |
O6—H6O···O5ii | 0.81 (3) | 1.71 (3) | 2.526 (2) | 175 (3) |
N1—H11N···O2iii | 0.94 (3) | 1.83 (3) | 2.759 (2) | 169 (2) |
N1—H12N···O8i | 0.90 (3) | 2.00 (3) | 2.873 (3) | 164 (2) |
N1—H13N···O3i | 0.87 (3) | 2.08 (3) | 2.928 (2) | 167 (2) |
N2—H21N···O7 | 0.88 (3) | 2.00 (3) | 2.860 (3) | 165 (3) |
N2—H22N···O2iv | 0.85 (3) | 2.14 (3) | 2.914 (3) | 151 (2) |
N2—H23N···O1 | 0.93 (3) | 1.91 (3) | 2.832 (3) | 171 (3) |
N2—H24N···O1v | 0.90 (2) | 1.97 (3) | 2.850 (3) | 165 (2) |
O7—H71O···O8 | 0.83 (3) | 1.99 (3) | 2.817 (3) | 177 (3) |
O7—H72O···O5vi | 0.80 (3) | 1.97 (3) | 2.745 (2) | 165 (3) |
O8—H81O···O1vii | 0.768 (17) | 2.244 (19) | 2.984 (2) | 162 (3) |
O8—H82O···O7viii | 0.775 (18) | 1.999 (19) | 2.770 (3) | 173 (4) |
Symmetry codes: (i) −x+1, y+1/2, −z+3/2; (ii) −x+2, −y+1, −z+2; (iii) −x+1, y−1/2, −z+3/2; (iv) x, y−1, z; (v) −x+1, −y+1, −z+2; (vi) x−1, y, z; (vii) −x, y−1/2, −z+3/2; (viii) −x, y+1/2, −z+3/2. |
Acknowledgements
The authors offer special thanks to Dr E. B. Rusanov for his help with the article preparation.
References
Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19. CrossRef Web of Science Google Scholar
Bruckmann, J., Krüger, C., Lehmann, C. W., Leitner, W., Rust, J. & Six, C. (1999). Acta Cryst. C55, 695–696. Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
Bruker (2005). APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Coiro, V. M. & Lamba, D. (1989). Acta Cryst. C45, 446–448. CSD CrossRef CAS Web of Science IUCr Journals Google Scholar
Matczak-Jon, E. & Videnova-Adrabinska, V. (2005). Coord. Chem. Rev. 249, 2458–2488. Web of Science CrossRef CAS Google Scholar
Olive, G., Ellis, D. D., Siri, D., Le Moigne, F., Lutz, M., Spek, A. L., Tordo, P. & Reboul, J.-P. (2000). Acta Cryst. C56, 720–722. CSD CrossRef CAS IUCr Journals Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Spek, A. L. (2003). J. Appl. Cryst. 36, 7–13. Web of Science CrossRef CAS IUCr Journals Google Scholar
Szabo, Ch. M., Martin, M. B. & Oldfield, E. (2002). J. Med. Chem. 45, 2894–2903. Web of Science CSD CrossRef PubMed CAS Google Scholar
Tromelin, A., El Manouni, D. & Burgada, R. (1986). Phosphorus Sulfur Relat. Elem. 27, 301–312. CrossRef CAS Web of Science Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The organic diphosphonic acids are potentially very powerful chelating agents used in metal extractions and are tested by the pharmaceutical industry for use as efficient drugs preventing calcification and inhibiting bone resorption (Tromelin et al., 1986, Matczak-Jon & Videnova-Adrabinska, 2005). Diphosphonic acids are used in the treatment of Paget disease, osteoporosis and tumoral osteolysis (Szabo et al., 2002). The asymmetric unit of title compound (Fig. 1) contains one molecule, which exists as anion with two protons transferred from the phosphonic group to the amino group and from another phosphonic group to ammonium cation. In the crystal structure of the title compound the phosphorus atom displays a slightly distorted tetrahedral geometry provided by three oxygen atoms and one carbon atom (Bruckmann et al. (1999); Olive et al. (2000); Coiro et al. (1989)). Bond lengths and angles have normal values (Allen et al., 1987). One ammonium cation and two solvent water molecules are present in asymetric unit. The structure is stabilized by three-dimensional O–H···O and N–H···O hydrogen bonds network (Table 1, Fig.2).