organic compounds
1,3-Dimethoxy-2,3-dihydro-1H-isoindole-2-carbothioamide
aInstitute of Chemistry, University of the Punjab, Lahore-54590, Pakistan, bDepartment of Chemistry, University of Sargodha, Sargodha, Pakistan, cDepartment of Physics, University of Sargodha, Sargodha, Pakistan, and dDepartment of Chemistry, University of Sargodha, Sargodha, Pakistan
*Correspondence e-mail: dmntahir_uos@yahoo.com
In the molecule of the title compound, C11H14N2O2S, the five-membered ring adopts an and an intramolecular N—H⋯O hydrogen bond occurs. Intramolecular N—H⋯O, C—H⋯S and C—H⋯N hydrogen bonds result in the formation of two five- and one six-membered rings, having twisted conformations. In the intermolecular N—H⋯O, N—H⋯S and C—H⋯S hydrogen bonds link the molecules, forming polymeric sheets. The π–π contacts between the isoindole ring systems, [centroid–centroid distances = 3.5883 (8) and 4.0619 (8) Å] may further stabilize the structure. A C—H⋯π interactions also occur.
Related literature
For general background to isoindoles and their derivatives, see: Mancilla et al. (2007); Toru et al. (1986). For related structures, see: Maliha et al. (2007); Maliha, Hussain et al. (2008); Maliha, Tariq et al. (2008). For bond-length data, see: Allen et al. (1987).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2007); cell SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 2003); software used to prepare material for publication: WinGX publication routines (Farrugia, 1999) and PLATON.
Supporting information
10.1107/S1600536808040075/hk2586sup1.cif
contains datablocks text, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808040075/hk2586Isup2.hkl
For the preparation of the title conpound, ortho-phthaldehyde (1.34 g, 200 mmol) and thiourea (0.76 g, 200 mmol) were added to distilled water (250 ml), and aqueous NaOH (5 ml, 5%) was added dropwise with constant stirring. After 3 h, a colorless precipitate was obtained, which was washed with hexane, ethanol, acetone and methanol, respectively. Then, it was further refluxed in methanol for 2 h, and left to stand overnight. The deep red tiny crystals settled down, which were washed with ether, hexane and cold methanol, respectively. Crystals suitable for X-ray analysis were obtained from a solution of acetone/methanol mixture by slow evaporation at room temperature.
H1, H8 (for CH) and H1N, H2N (for NH2) atoms were located in difference syntheses and refined [C-H = 0.972 (17) and 0.979 (16) Å, N-H = 0.891 (17) and 0.826 (17) Å; Uiso(H) = 1.2Ueq(C,N). The remaining H atoms were positioned geometrically, with C-H = 0.95 and 0.98 Å for aromatic and methyl H, respectively, and constrained to ride on their parent atoms with Uiso(H) = xUeq(C), where x = 1.5 for methyl H and x = 1.2 for aromatic H atoms.
Data collection: APEX2 (Bruker, 2007); cell
SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 2003); software used to prepare material for publication: 'WinGX publication routines (Farrugia, 1999) and PLATON'.Fig. 1. The molecular structure of the title molecule, with the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. Hydrogen bonds are shown as dashed lines. | |
Fig. 2. A partial packing diagram of the title compound. Hydrogen bonds are shown as dashed lines. |
C11H14N2O2S | F(000) = 1008 |
Mr = 238.30 | Dx = 1.362 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 1295 reflections |
a = 15.4577 (8) Å | θ = 2.3–28.3° |
b = 8.6455 (5) Å | µ = 0.27 mm−1 |
c = 18.2184 (10) Å | T = 100 K |
β = 107.322 (2)° | Prismatic, red |
V = 2324.3 (2) Å3 | 0.20 × 0.16 × 0.12 mm |
Z = 8 |
Bruker Kappa APEXII CCD diffractometer | 2894 independent reflections |
Radiation source: fine-focus sealed tube | 2471 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.032 |
Detector resolution: 7.40 pixels mm-1 | θmax = 28.3°, θmin = 2.3° |
ω scans | h = −20→20 |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | k = −11→11 |
Tmin = 0.945, Tmax = 0.969 | l = −24→23 |
18083 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.032 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.110 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.01 | w = 1/[σ2(Fo2) + (0.0799P)2 + 0.660P] where P = (Fo2 + 2Fc2)/3 |
2894 reflections | (Δ/σ)max = 0.002 |
159 parameters | Δρmax = 0.44 e Å−3 |
0 restraints | Δρmin = −0.37 e Å−3 |
C11H14N2O2S | V = 2324.3 (2) Å3 |
Mr = 238.30 | Z = 8 |
Monoclinic, C2/c | Mo Kα radiation |
a = 15.4577 (8) Å | µ = 0.27 mm−1 |
b = 8.6455 (5) Å | T = 100 K |
c = 18.2184 (10) Å | 0.20 × 0.16 × 0.12 mm |
β = 107.322 (2)° |
Bruker Kappa APEXII CCD diffractometer | 2894 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | 2471 reflections with I > 2σ(I) |
Tmin = 0.945, Tmax = 0.969 | Rint = 0.032 |
18083 measured reflections |
R[F2 > 2σ(F2)] = 0.032 | 0 restraints |
wR(F2) = 0.110 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.01 | Δρmax = 0.44 e Å−3 |
2894 reflections | Δρmin = −0.37 e Å−3 |
159 parameters |
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.11517 (2) | 0.49877 (3) | 0.21266 (2) | 0.0204 (1) | |
O1 | 0.14785 (6) | −0.02891 (10) | 0.15401 (5) | 0.0138 (2) | |
O2 | −0.01835 (6) | 0.30468 (10) | 0.05803 (5) | 0.0171 (2) | |
N1 | 0.07220 (7) | 0.20405 (11) | 0.17484 (6) | 0.0120 (3) | |
N2 | 0.21825 (7) | 0.25081 (12) | 0.24928 (6) | 0.0148 (3) | |
C1 | 0.08273 (8) | 0.03577 (13) | 0.18556 (7) | 0.0110 (3) | |
C2 | −0.01336 (8) | −0.02006 (14) | 0.15260 (7) | 0.0117 (3) | |
C3 | −0.04573 (8) | −0.17035 (14) | 0.15157 (7) | 0.0154 (3) | |
C4 | −0.13922 (9) | −0.19328 (15) | 0.12533 (8) | 0.0174 (3) | |
C5 | −0.19841 (9) | −0.06902 (15) | 0.10138 (7) | 0.0167 (3) | |
C6 | −0.16516 (8) | 0.08113 (14) | 0.10175 (7) | 0.0141 (3) | |
C7 | −0.07174 (8) | 0.10380 (13) | 0.12693 (7) | 0.0119 (3) | |
C8 | −0.01925 (8) | 0.25238 (13) | 0.13215 (7) | 0.0128 (3) | |
C9 | 0.12812 (10) | −0.01421 (17) | 0.07232 (8) | 0.0221 (4) | |
C10 | −0.08727 (10) | 0.41497 (17) | 0.02569 (9) | 0.0275 (4) | |
C11 | 0.13705 (8) | 0.30768 (14) | 0.21217 (7) | 0.0125 (3) | |
H1 | 0.1091 (11) | 0.0123 (16) | 0.2398 (10) | 0.0132* | |
H1N | 0.2602 (11) | 0.318 (2) | 0.2748 (9) | 0.0178* | |
H2N | 0.2325 (11) | 0.160 (2) | 0.2447 (9) | 0.0178* | |
H3 | −0.00537 | −0.25487 | 0.16825 | 0.0184* | |
H4 | −0.16291 | −0.29503 | 0.12374 | 0.0208* | |
H5 | −0.26194 | −0.08673 | 0.08467 | 0.0201* | |
H6 | −0.20533 | 0.16594 | 0.08519 | 0.0169* | |
H8 | −0.0393 (10) | 0.3344 (18) | 0.1604 (9) | 0.0153* | |
H9A | 0.07524 | −0.07779 | 0.04676 | 0.0265* | |
H9B | 0.18042 | −0.04909 | 0.05681 | 0.0265* | |
H9C | 0.11520 | 0.09429 | 0.05753 | 0.0265* | |
H10A | −0.14679 | 0.36807 | 0.01925 | 0.0330* | |
H10B | −0.08290 | 0.44837 | −0.02449 | 0.0330* | |
H10C | −0.07967 | 0.50456 | 0.05998 | 0.0330* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0134 (2) | 0.0095 (2) | 0.0347 (2) | 0.0004 (1) | 0.0018 (2) | −0.0017 (1) |
O1 | 0.0126 (4) | 0.0154 (4) | 0.0131 (4) | 0.0039 (3) | 0.0032 (3) | −0.0015 (3) |
O2 | 0.0180 (4) | 0.0163 (4) | 0.0155 (4) | 0.0019 (3) | 0.0025 (4) | 0.0062 (3) |
N1 | 0.0103 (5) | 0.0095 (4) | 0.0144 (5) | 0.0014 (3) | 0.0010 (4) | 0.0007 (4) |
N2 | 0.0121 (5) | 0.0107 (5) | 0.0195 (5) | 0.0001 (4) | 0.0013 (4) | −0.0006 (4) |
C1 | 0.0115 (5) | 0.0089 (5) | 0.0119 (5) | 0.0016 (4) | 0.0024 (4) | 0.0000 (4) |
C2 | 0.0105 (5) | 0.0133 (5) | 0.0109 (5) | 0.0006 (4) | 0.0025 (4) | −0.0007 (4) |
C3 | 0.0161 (6) | 0.0124 (5) | 0.0162 (6) | 0.0005 (4) | 0.0026 (5) | −0.0008 (4) |
C4 | 0.0182 (6) | 0.0145 (6) | 0.0184 (6) | −0.0043 (4) | 0.0040 (5) | −0.0014 (5) |
C5 | 0.0123 (5) | 0.0208 (6) | 0.0160 (6) | −0.0035 (5) | 0.0027 (5) | −0.0001 (5) |
C6 | 0.0126 (5) | 0.0160 (6) | 0.0130 (6) | 0.0016 (4) | 0.0027 (4) | 0.0011 (4) |
C7 | 0.0134 (5) | 0.0121 (5) | 0.0098 (5) | 0.0006 (4) | 0.0030 (4) | −0.0004 (4) |
C8 | 0.0113 (5) | 0.0116 (5) | 0.0138 (5) | 0.0013 (4) | 0.0013 (4) | 0.0011 (4) |
C9 | 0.0224 (7) | 0.0315 (8) | 0.0134 (6) | 0.0055 (5) | 0.0069 (5) | −0.0018 (5) |
C10 | 0.0194 (6) | 0.0282 (7) | 0.0313 (8) | 0.0045 (5) | 0.0021 (6) | 0.0163 (6) |
C11 | 0.0127 (5) | 0.0127 (5) | 0.0126 (5) | −0.0006 (4) | 0.0046 (4) | 0.0003 (4) |
S1—C11 | 1.6869 (12) | C5—C6 | 1.3954 (18) |
O1—C1 | 1.4145 (16) | C6—C7 | 1.3927 (18) |
O1—C9 | 1.4331 (16) | C7—C8 | 1.5072 (17) |
O2—C8 | 1.4280 (15) | C1—H1 | 0.972 (17) |
O2—C10 | 1.4204 (18) | C3—H3 | 0.9500 |
N1—C1 | 1.4705 (15) | C4—H4 | 0.9500 |
N1—C8 | 1.4571 (17) | C5—H5 | 0.9500 |
N1—C11 | 1.3653 (16) | C6—H6 | 0.9500 |
N2—C11 | 1.3300 (17) | C8—H8 | 0.979 (16) |
N2—H1N | 0.891 (17) | C9—H9A | 0.9800 |
N2—H2N | 0.826 (17) | C9—H9B | 0.9800 |
C1—C2 | 1.5062 (18) | C9—H9C | 0.9800 |
C2—C7 | 1.3887 (17) | C10—H10A | 0.9800 |
C2—C3 | 1.3905 (17) | C10—H10B | 0.9800 |
C3—C4 | 1.3946 (19) | C10—H10C | 0.9800 |
C4—C5 | 1.3942 (19) | ||
S1···O2 | 3.3984 (10) | C6···H10A | 2.9600 |
S1···N2i | 3.2857 (11) | C6···H1vi | 2.819 (17) |
S1···H3ii | 2.7900 | C6···H9Biv | 2.8400 |
S1···H8 | 2.697 (16) | C7···H1vi | 2.773 (17) |
S1···H2Ni | 2.646 (17) | C7···H10A | 3.0100 |
O1···N2 | 2.9867 (14) | C10···H10Bv | 2.8900 |
O1···N2iii | 2.9738 (14) | C10···H5vii | 2.9800 |
O2···S1 | 3.3984 (10) | H1···N2 | 2.637 (16) |
O1···H1Niii | 2.087 (17) | H1···H2N | 2.28 (2) |
O1···H2N | 2.413 (17) | H1···C2vi | 2.800 (18) |
O2···H9C | 2.7500 | H1···C3vi | 2.920 (17) |
O2···H9Aiv | 2.7000 | H1···C4vi | 2.955 (16) |
O2···H10Bv | 2.8200 | H1···C5vi | 2.897 (17) |
N2···C6vi | 3.3938 (16) | H1···C6vi | 2.819 (17) |
N2···O1 | 2.9867 (14) | H1···C7vi | 2.773 (17) |
N2···O1i | 2.9738 (14) | H1N···O1i | 2.087 (17) |
N2···S1iii | 3.2857 (11) | H1N···C1i | 2.986 (17) |
N1···H9C | 2.6000 | H2N···O1 | 2.413 (17) |
N2···H1 | 2.637 (16) | H2N···C1 | 2.488 (17) |
C1···C2vi | 3.4582 (18) | H2N···H1 | 2.28 (2) |
C1···C7vi | 3.5200 (17) | H2N···S1iii | 2.646 (17) |
C2···C2vi | 3.4486 (17) | H3···S1viii | 2.7900 |
C2···C1vi | 3.4582 (18) | H5···C10vii | 2.9800 |
C3···C3vi | 3.4413 (17) | H6···H10A | 2.4400 |
C6···N2vi | 3.3938 (16) | H6···H10Avii | 2.5200 |
C6···C9iv | 3.4352 (19) | H8···S1 | 2.697 (16) |
C6···C10 | 3.563 (2) | H8···H10C | 2.2800 |
C7···C1vi | 3.5200 (17) | H9A···C2 | 2.7200 |
C7···C9iv | 3.5571 (19) | H9A···O2iv | 2.7000 |
C9···C7iv | 3.5571 (19) | H9B···C6iv | 2.8400 |
C9···C6iv | 3.4352 (19) | H9C···O2 | 2.7500 |
C10···C10v | 3.438 (2) | H9C···N1 | 2.6000 |
C10···C6 | 3.563 (2) | H10A···C6 | 2.9600 |
C1···H1Niii | 2.986 (17) | H10A···C7 | 3.0100 |
C1···H2N | 2.488 (17) | H10A···H6 | 2.4400 |
C2···H9A | 2.7200 | H10A···H6vii | 2.5200 |
C2···H1vi | 2.800 (18) | H10B···O2v | 2.8200 |
C3···H1vi | 2.920 (17) | H10B···C10v | 2.8900 |
C4···H1vi | 2.955 (16) | H10C···H8 | 2.2800 |
C5···H1vi | 2.897 (17) | ||
C1—O1—C9 | 115.45 (10) | O1—C1—H1 | 101.4 (10) |
C8—O2—C10 | 112.80 (10) | N1—C1—H1 | 109.8 (8) |
C1—N1—C8 | 113.96 (10) | C2—C1—H1 | 113.8 (10) |
C1—N1—C11 | 123.18 (10) | C2—C3—H3 | 121.00 |
C8—N1—C11 | 121.97 (10) | C4—C3—H3 | 121.00 |
H1N—N2—H2N | 119.8 (16) | C3—C4—H4 | 120.00 |
C11—N2—H1N | 117.0 (11) | C5—C4—H4 | 120.00 |
C11—N2—H2N | 122.7 (12) | C4—C5—H5 | 120.00 |
O1—C1—N1 | 113.65 (10) | C6—C5—H5 | 120.00 |
O1—C1—C2 | 116.61 (10) | C5—C6—H6 | 121.00 |
N1—C1—C2 | 101.95 (10) | C7—C6—H6 | 121.00 |
C1—C2—C3 | 127.81 (11) | O2—C8—H8 | 111.2 (9) |
C3—C2—C7 | 121.39 (12) | N1—C8—H8 | 109.6 (9) |
C1—C2—C7 | 110.61 (10) | C7—C8—H8 | 113.7 (9) |
C2—C3—C4 | 118.00 (12) | O1—C9—H9A | 109.00 |
C3—C4—C5 | 120.95 (12) | O1—C9—H9B | 109.00 |
C4—C5—C6 | 120.59 (13) | O1—C9—H9C | 109.00 |
C5—C6—C7 | 118.48 (11) | H9A—C9—H9B | 109.00 |
C2—C7—C6 | 120.56 (11) | H9A—C9—H9C | 109.00 |
C2—C7—C8 | 110.63 (11) | H9B—C9—H9C | 109.00 |
C6—C7—C8 | 128.80 (11) | O2—C10—H10A | 109.00 |
N1—C8—C7 | 101.99 (9) | O2—C10—H10B | 109.00 |
O2—C8—N1 | 108.33 (10) | O2—C10—H10C | 109.00 |
O2—C8—C7 | 111.52 (10) | H10A—C10—H10B | 109.00 |
S1—C11—N1 | 121.78 (10) | H10A—C10—H10C | 109.00 |
S1—C11—N2 | 121.31 (10) | H10B—C10—H10C | 109.00 |
N1—C11—N2 | 116.90 (11) | ||
C9—O1—C1—N1 | −62.73 (14) | N1—C1—C2—C3 | −175.58 (12) |
C9—O1—C1—C2 | 55.45 (14) | N1—C1—C2—C7 | −0.62 (13) |
C10—O2—C8—N1 | −153.14 (10) | C1—C2—C3—C4 | 173.19 (12) |
C10—O2—C8—C7 | 95.39 (12) | C7—C2—C3—C4 | −1.28 (19) |
C8—N1—C1—O1 | 120.77 (11) | C1—C2—C7—C6 | −173.11 (11) |
C8—N1—C1—C2 | −5.57 (13) | C1—C2—C7—C8 | 6.27 (14) |
C11—N1—C1—O1 | −69.90 (15) | C3—C2—C7—C6 | 2.22 (19) |
C11—N1—C1—C2 | 163.77 (11) | C3—C2—C7—C8 | −178.40 (11) |
C1—N1—C8—O2 | −108.78 (11) | C2—C3—C4—C5 | −0.45 (19) |
C1—N1—C8—C7 | 8.96 (13) | C3—C4—C5—C6 | 1.3 (2) |
C11—N1—C8—O2 | 81.74 (13) | C4—C5—C6—C7 | −0.33 (19) |
C11—N1—C8—C7 | −160.52 (11) | C5—C6—C7—C2 | −1.37 (18) |
C1—N1—C11—S1 | −167.45 (9) | C5—C6—C7—C8 | 179.37 (12) |
C1—N1—C11—N2 | 11.57 (18) | C2—C7—C8—O2 | 106.35 (12) |
C8—N1—C11—S1 | 1.05 (17) | C2—C7—C8—N1 | −9.08 (13) |
C8—N1—C11—N2 | −179.93 (11) | C6—C7—C8—O2 | −74.34 (16) |
O1—C1—C2—C3 | 60.04 (17) | C6—C7—C8—N1 | 170.24 (12) |
O1—C1—C2—C7 | −125.00 (11) |
Symmetry codes: (i) −x+1/2, y+1/2, −z+1/2; (ii) x, y+1, z; (iii) −x+1/2, y−1/2, −z+1/2; (iv) −x, −y, −z; (v) −x, −y+1, −z; (vi) −x, y, −z+1/2; (vii) −x−1/2, −y+1/2, −z; (viii) x, y−1, z. |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H1N···O1i | 0.891 (17) | 2.087 (17) | 2.9738 (14) | 172.9 (15) |
N2—H2N···O1 | 0.826 (17) | 2.413 (17) | 2.9867 (14) | 127.3 (14) |
N2—H2N···S1iii | 0.826 (17) | 2.646 (17) | 3.2857 (11) | 135.4 (15) |
C3—H3···S1viii | 0.9500 | 2.7900 | 3.7362 (13) | 178.00 |
C8—H8···S1 | 0.979 (16) | 2.697 (16) | 3.0318 (12) | 100.5 (11) |
C9—H9C···N1 | 0.9800 | 2.6000 | 2.9593 (18) | 102.00 |
C1—H1···CgBvi | 0.9800 | 2.500 (17) | 3.4059 (13) | 155.1 (1) |
C9—H9C···CgA | 0.9800 | 2.74 | 2.9052 (16) | 90 |
Symmetry codes: (i) −x+1/2, y+1/2, −z+1/2; (iii) −x+1/2, y−1/2, −z+1/2; (vi) −x, y, −z+1/2; (viii) x, y−1, z. |
Experimental details
Crystal data | |
Chemical formula | C11H14N2O2S |
Mr | 238.30 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 100 |
a, b, c (Å) | 15.4577 (8), 8.6455 (5), 18.2184 (10) |
β (°) | 107.322 (2) |
V (Å3) | 2324.3 (2) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.27 |
Crystal size (mm) | 0.20 × 0.16 × 0.12 |
Data collection | |
Diffractometer | Bruker Kappa APEXII CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2005) |
Tmin, Tmax | 0.945, 0.969 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 18083, 2894, 2471 |
Rint | 0.032 |
(sin θ/λ)max (Å−1) | 0.667 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.032, 0.110, 1.01 |
No. of reflections | 2894 |
No. of parameters | 159 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.44, −0.37 |
Computer programs: APEX2 (Bruker, 2007), SAINT (Bruker, 2007), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 2003), 'WinGX publication routines (Farrugia, 1999) and PLATON'.
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H1N···O1i | 0.891 (17) | 2.087 (17) | 2.9738 (14) | 172.9 (15) |
N2—H2N···O1 | 0.826 (17) | 2.413 (17) | 2.9867 (14) | 127.3 (14) |
N2—H2N···S1ii | 0.826 (17) | 2.646 (17) | 3.2857 (11) | 135.4 (15) |
C3—H3···S1iii | 0.9500 | 2.7900 | 3.7362 (13) | 178.00 |
C8—H8···S1 | 0.979 (16) | 2.697 (16) | 3.0318 (12) | 100.5 (11) |
C9—H9C···N1 | 0.9800 | 2.6000 | 2.9593 (18) | 102.00 |
C1—H1···CgBiv | 0.9800 | 2.500 (17) | 3.4059 (13) | 155.1 (1) |
C9—H9C···CgA | 0.9800 | 2.74 | 2.9052 (16) | 90 |
Symmetry codes: (i) −x+1/2, y+1/2, −z+1/2; (ii) −x+1/2, y−1/2, −z+1/2; (iii) x, y−1, z; (iv) −x, y, −z+1/2. |
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Isoindoles and their derivatives are of great pharmaceutical importance (Mancilla et al., 2007). Certain derivatives of isoindoles have shown a wide range of herbicidal activities (Toru et al., 1986). The title compound is in continuation of the syntheses of isoindoles along with their derivatives and characterizations with the help of X-ray crystallography (Maliha et al., 2007; Maliha, Hussain et al., 2008; Maliha, Tariq et al., 2008).
In the molecule of title compound (Fig 1), the bond lengths (Allen et al., 1987) and angles are within normal ranges. Ring A (C2-C7) is, of course, planar, while the five-membered ring B (N1/C1/C2/C7/C8) adopts envelope conformation with C8 atom displaced by 0.141 (3) Å from the plane of the other ring atoms. The intramolecular N-H···O, C-H···S and C-H···N hydrogen bonds (Table 1) result in the formation of two five- and one six-membered rings: C (N1/S1/C8/C11/H8), D (O1/N1/N2/C1/C11/H2N) and E (O1/N1/C1/C9/H9C), respectively, having twisted conformations.
In the crystal structure, intermolecular N-H···O, N-H···S and C-H···S hydrogen bonds (Table 1) link the molecules to form polymeric sheets, in which the orientations of O—CH3 groups cause to the R and S-configurations at the carbon atoms, C1 and C8, respectively. The behaviour of the O—CH3 groups are not identical, because only opposite of S-atom is involved in intramolecular H-bonding. The π-π contacts between the isoindole ring systems, CgB—CgBi and CgB—CgAi [symmetry code: (i) -x, y, 1/2 - z, where CgA and CgB are centroids of the rings A (C2-C7) and B (N1/C1/C2/C7/C8)] may further stabilize the structure, with centroid-centroid distances of 3.5883 (8) Å and 4.0619 (8) Å. There also exist two C–H···π interactions (Table 1).