organic compounds
Isopropyl 2-(5-chloro-3-methylsulfinyl-1-benzofuran-2-yl)acetate
aDepartment of Chemistry, Dongeui University, San 24 Kaya-dong Busanjin-gu, Busan 614-714, Republic of Korea, and bDepartment of Chemistry, Pukyong National University, 599-1 Daeyeon 3-dong Nam-gu, Busan 608-737, Republic of Korea
*Correspondence e-mail: uklee@pknu.ac.kr
In the title compound, C14H15ClO4S, the S atom has a distorted trigonal-pyramidal coordination. The O atom and the methyl group of the methylsulfinyl substituent lie on opposite sides of the benzofuran ring system. The is stabilized by intermolecular aromatic π–π interactions between the benzene rings of neighbouring molecules [centroid–centroid distance = 4.057 (3) Å], and by C—H⋯π interactions between a methyl H atom and the benzene ring of an adjacent molecule.
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 2001); cell SAINT (Bruker, 2001); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 1998); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536808039937/ng2521sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808039937/ng2521Isup2.hkl
77% 3-chloroperoxybenzoic acid (173 mg, 0.77 mmol) was added in small portions to a stirred solution of isopropyl 2-(5-chloro-3-methylsulfanyl-1-benzofuran-2-yl)acetate (209 mg, 0.7 mmol) in dichloromethane (30 ml) at 273 K. After being stirred for 3 h at room temperature, the mixture was washed with saturated sodium bicarbonate solution and the organic layer was separated, dried over magnesium sulfate, filtered and concentrated in vacuum. The residue was purified by δ 1.28 (d, J = 6.20 Hz, 6H), 3.08 (s, 3H), 4.0 (s, 2H), 5.02-5.08 (m, 1H), 7.35 (dd, J = 8.76 Hz and J = 1.84 Hz, 1H), 7.45 (d, J = 8.76 Hz, 1H), 7.95 (d, J = 1.84 Hz, 1H); EI-MS 316 [M+2], 314 [M+].
(hexane-ethyl acetate, 1:2 v/v) to afford the title compound as a colorless solid [yield 83%, m.p. 422–423 K; Rf = 0.52 (hexane-ethyl acetate, 1;2 v/v)]. Single crystals suitable for X-ray diffraction were prepared by evaporation of a solution of the title compound in acetone at room temperature. Spectroscopic analysis: 1H NMR (CDCl3, 400 MHz)All H atoms were geometrically positioned and refined using a riding model, with C—H = 0.93 Å for the aryl, 0.97 Å for the methylene, 0.98 Å for the methine, and 0.96 Å for the methyl H atoms. Uiso(H) = 1.2Ueq(C) for the aryl, methine and methylene H atoms, and 1.5Ueq(C) for methyl H atoms.
Data collection: SMART (Bruker, 2001); cell
SAINT (Bruker, 2001); data reduction: SAINT (Bruker, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 1998); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).C14H15ClO4S | Z = 2 |
Mr = 314.77 | F(000) = 328 |
Triclinic, P1 | Dx = 1.401 Mg m−3 |
Hall symbol: -P 1 | Melting point = 422–423 K |
a = 7.8824 (6) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 10.0352 (8) Å | Cell parameters from 4167 reflections |
c = 10.9004 (8) Å | θ = 2.5–28.3° |
α = 69.254 (1)° | µ = 0.41 mm−1 |
β = 81.662 (1)° | T = 298 K |
γ = 67.703 (1)° | Plate, colorless |
V = 745.98 (10) Å3 | 0.50 × 0.40 × 0.15 mm |
Bruker SMART CCD diffractometer | 2602 independent reflections |
Radiation source: fine-focus sealed tube | 2354 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.017 |
Detector resolution: 10.0 pixels mm-1 | θmax = 25.0°, θmin = 2.5° |
ϕ and ω scans | h = −9→9 |
Absorption correction: multi-scan (SADABS; Sheldrick, 1999) | k = −11→11 |
Tmin = 0.816, Tmax = 0.939 | l = −12→12 |
5508 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.048 | Hydrogen site location: difference Fourier map |
wR(F2) = 0.125 | H-atom parameters constrained |
S = 1.12 | w = 1/[σ2(Fo2) + (0.0534P)2 + 0.4971P] where P = (Fo2 + 2Fc2)/3 |
2602 reflections | (Δ/σ)max < 0.001 |
184 parameters | Δρmax = 0.49 e Å−3 |
0 restraints | Δρmin = −0.29 e Å−3 |
C14H15ClO4S | γ = 67.703 (1)° |
Mr = 314.77 | V = 745.98 (10) Å3 |
Triclinic, P1 | Z = 2 |
a = 7.8824 (6) Å | Mo Kα radiation |
b = 10.0352 (8) Å | µ = 0.41 mm−1 |
c = 10.9004 (8) Å | T = 298 K |
α = 69.254 (1)° | 0.50 × 0.40 × 0.15 mm |
β = 81.662 (1)° |
Bruker SMART CCD diffractometer | 2602 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1999) | 2354 reflections with I > 2σ(I) |
Tmin = 0.816, Tmax = 0.939 | Rint = 0.017 |
5508 measured reflections |
R[F2 > 2σ(F2)] = 0.048 | 0 restraints |
wR(F2) = 0.125 | H-atom parameters constrained |
S = 1.12 | Δρmax = 0.49 e Å−3 |
2602 reflections | Δρmin = −0.29 e Å−3 |
184 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S | 0.74726 (9) | 0.60225 (8) | 0.54010 (6) | 0.0480 (2) | |
Cl | 0.29574 (12) | 0.21443 (10) | 0.87346 (10) | 0.0816 (3) | |
O1 | 0.8348 (2) | 0.45903 (19) | 0.91914 (16) | 0.0435 (4) | |
O2 | 0.7488 (3) | 0.4832 (3) | 0.48756 (19) | 0.0637 (6) | |
O3 | 1.0254 (3) | 0.8446 (2) | 0.7284 (2) | 0.0582 (5) | |
O4 | 0.7414 (3) | 0.8557 (2) | 0.7070 (2) | 0.0674 (6) | |
C1 | 0.7475 (3) | 0.5246 (3) | 0.7125 (2) | 0.0393 (5) | |
C2 | 0.6447 (3) | 0.4337 (3) | 0.7973 (2) | 0.0378 (5) | |
C3 | 0.5137 (3) | 0.3799 (3) | 0.7797 (3) | 0.0462 (6) | |
H3 | 0.4686 | 0.4043 | 0.6972 | 0.055* | |
C4 | 0.4550 (4) | 0.2888 (3) | 0.8910 (3) | 0.0510 (7) | |
C5 | 0.5171 (4) | 0.2520 (3) | 1.0159 (3) | 0.0544 (7) | |
H5 | 0.4720 | 0.1905 | 1.0878 | 0.065* | |
C6 | 0.6450 (4) | 0.3061 (3) | 1.0341 (3) | 0.0486 (6) | |
H6 | 0.6878 | 0.2832 | 1.1170 | 0.058* | |
C7 | 0.7062 (3) | 0.3959 (3) | 0.9229 (2) | 0.0408 (5) | |
C8 | 0.8579 (3) | 0.5352 (3) | 0.7894 (2) | 0.0409 (5) | |
C9 | 0.9910 (3) | 0.6147 (3) | 0.7601 (3) | 0.0455 (6) | |
H9A | 1.0667 | 0.5947 | 0.6856 | 0.055* | |
H9B | 1.0708 | 0.5735 | 0.8347 | 0.055* | |
C10 | 0.9005 (4) | 0.7845 (3) | 0.7302 (2) | 0.0437 (6) | |
C11 | 0.9615 (5) | 1.0095 (3) | 0.7059 (4) | 0.0697 (9) | |
H11 | 0.8528 | 1.0642 | 0.6503 | 0.084* | |
C12 | 1.1212 (8) | 1.0569 (5) | 0.6388 (5) | 0.1199 (18) | |
H12A | 1.0856 | 1.1656 | 0.6142 | 0.180* | |
H12B | 1.1570 | 1.0267 | 0.5619 | 0.180* | |
H12C | 1.2226 | 1.0085 | 0.6979 | 0.180* | |
C13 | 0.9213 (8) | 1.0315 (4) | 0.8347 (5) | 0.1195 (19) | |
H13A | 0.8255 | 0.9938 | 0.8777 | 0.179* | |
H13B | 0.8825 | 1.1381 | 0.8233 | 0.179* | |
H13C | 1.0296 | 0.9770 | 0.8872 | 0.179* | |
C14 | 0.5183 (4) | 0.7385 (4) | 0.5211 (3) | 0.0671 (8) | |
H14A | 0.4977 | 0.7998 | 0.4304 | 0.101* | |
H14B | 0.5018 | 0.8027 | 0.5728 | 0.101* | |
H14C | 0.4327 | 0.6861 | 0.5499 | 0.101* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S | 0.0489 (4) | 0.0589 (4) | 0.0385 (4) | −0.0261 (3) | −0.0038 (3) | −0.0100 (3) |
Cl | 0.0694 (5) | 0.0748 (6) | 0.1092 (7) | −0.0480 (5) | −0.0073 (5) | −0.0132 (5) |
O1 | 0.0486 (10) | 0.0464 (9) | 0.0398 (9) | −0.0184 (8) | −0.0057 (7) | −0.0154 (7) |
O2 | 0.0685 (13) | 0.0804 (14) | 0.0515 (12) | −0.0250 (11) | −0.0047 (9) | −0.0322 (11) |
O3 | 0.0622 (12) | 0.0429 (10) | 0.0740 (13) | −0.0240 (9) | −0.0176 (10) | −0.0120 (9) |
O4 | 0.0501 (12) | 0.0510 (11) | 0.0946 (16) | −0.0161 (10) | −0.0120 (11) | −0.0139 (11) |
C1 | 0.0427 (13) | 0.0388 (12) | 0.0383 (13) | −0.0157 (10) | −0.0035 (10) | −0.0124 (10) |
C2 | 0.0390 (12) | 0.0345 (12) | 0.0401 (13) | −0.0113 (10) | −0.0023 (10) | −0.0134 (10) |
C3 | 0.0438 (14) | 0.0438 (14) | 0.0532 (15) | −0.0174 (11) | −0.0051 (11) | −0.0146 (12) |
C4 | 0.0428 (14) | 0.0421 (14) | 0.0682 (18) | −0.0179 (11) | −0.0002 (12) | −0.0153 (13) |
C5 | 0.0541 (16) | 0.0437 (14) | 0.0553 (16) | −0.0172 (13) | 0.0089 (13) | −0.0084 (12) |
C6 | 0.0509 (15) | 0.0428 (14) | 0.0432 (14) | −0.0102 (12) | 0.0007 (11) | −0.0111 (11) |
C7 | 0.0404 (13) | 0.0353 (12) | 0.0457 (13) | −0.0099 (10) | −0.0016 (10) | −0.0155 (10) |
C8 | 0.0430 (13) | 0.0374 (12) | 0.0434 (13) | −0.0130 (10) | −0.0041 (10) | −0.0145 (10) |
C9 | 0.0443 (14) | 0.0476 (14) | 0.0509 (15) | −0.0201 (11) | −0.0050 (11) | −0.0176 (12) |
C10 | 0.0484 (15) | 0.0482 (14) | 0.0384 (13) | −0.0223 (12) | −0.0030 (11) | −0.0121 (11) |
C11 | 0.082 (2) | 0.0406 (15) | 0.085 (2) | −0.0242 (15) | −0.0304 (18) | −0.0055 (15) |
C12 | 0.181 (5) | 0.083 (3) | 0.115 (4) | −0.086 (3) | 0.035 (3) | −0.027 (3) |
C13 | 0.159 (5) | 0.056 (2) | 0.121 (4) | −0.018 (3) | 0.045 (3) | −0.042 (2) |
C14 | 0.0657 (19) | 0.0586 (18) | 0.0640 (19) | −0.0112 (15) | −0.0194 (15) | −0.0095 (15) |
S—O2 | 1.493 (2) | C6—C7 | 1.378 (4) |
S—C1 | 1.761 (2) | C6—H6 | 0.9300 |
S—C14 | 1.790 (3) | C8—C9 | 1.482 (3) |
Cl—C4 | 1.747 (3) | C9—C10 | 1.506 (4) |
O1—C8 | 1.372 (3) | C9—H9A | 0.9700 |
O1—C7 | 1.374 (3) | C9—H9B | 0.9700 |
O3—C10 | 1.331 (3) | C11—C13 | 1.469 (6) |
O3—C11 | 1.472 (3) | C11—C12 | 1.513 (6) |
O4—C10 | 1.196 (3) | C11—H11 | 0.9800 |
C1—C8 | 1.348 (3) | C12—H12A | 0.9600 |
C1—C2 | 1.445 (3) | C12—H12B | 0.9600 |
C2—C7 | 1.392 (3) | C12—H12C | 0.9600 |
C2—C3 | 1.396 (3) | C13—H13A | 0.9600 |
C3—C4 | 1.376 (4) | C13—H13B | 0.9600 |
C3—H3 | 0.9300 | C13—H13C | 0.9600 |
C4—C5 | 1.390 (4) | C14—H14A | 0.9600 |
C5—C6 | 1.378 (4) | C14—H14B | 0.9600 |
C5—H5 | 0.9300 | C14—H14C | 0.9600 |
O2—S—C1 | 107.34 (12) | C10—C9—H9A | 109.0 |
O2—S—C14 | 106.36 (14) | C8—C9—H9B | 109.0 |
C1—S—C14 | 98.16 (14) | C10—C9—H9B | 109.0 |
C8—O1—C7 | 106.25 (18) | H9A—C9—H9B | 107.8 |
C10—O3—C11 | 117.8 (2) | O4—C10—O3 | 124.9 (2) |
C8—C1—C2 | 107.3 (2) | O4—C10—C9 | 125.3 (2) |
C8—C1—S | 123.59 (19) | O3—C10—C9 | 109.8 (2) |
C2—C1—S | 129.04 (18) | C13—C11—O3 | 107.5 (3) |
C7—C2—C3 | 119.7 (2) | C13—C11—C12 | 111.2 (4) |
C7—C2—C1 | 104.6 (2) | O3—C11—C12 | 104.8 (3) |
C3—C2—C1 | 135.7 (2) | C13—C11—H11 | 111.0 |
C4—C3—C2 | 116.3 (2) | O3—C11—H11 | 111.0 |
C4—C3—H3 | 121.8 | C12—C11—H11 | 111.0 |
C2—C3—H3 | 121.8 | C11—C12—H12A | 109.5 |
C3—C4—C5 | 123.4 (2) | C11—C12—H12B | 109.5 |
C3—C4—Cl | 118.1 (2) | H12A—C12—H12B | 109.5 |
C5—C4—Cl | 118.5 (2) | C11—C12—H12C | 109.5 |
C6—C5—C4 | 120.5 (2) | H12A—C12—H12C | 109.5 |
C6—C5—H5 | 119.8 | H12B—C12—H12C | 109.5 |
C4—C5—H5 | 119.8 | C11—C13—H13A | 109.5 |
C5—C6—C7 | 116.4 (2) | C11—C13—H13B | 109.5 |
C5—C6—H6 | 121.8 | H13A—C13—H13B | 109.5 |
C7—C6—H6 | 121.8 | C11—C13—H13C | 109.5 |
O1—C7—C6 | 125.7 (2) | H13A—C13—H13C | 109.5 |
O1—C7—C2 | 110.7 (2) | H13B—C13—H13C | 109.5 |
C6—C7—C2 | 123.6 (2) | S—C14—H14A | 109.5 |
C1—C8—O1 | 111.2 (2) | S—C14—H14B | 109.5 |
C1—C8—C9 | 132.5 (2) | H14A—C14—H14B | 109.5 |
O1—C8—C9 | 116.3 (2) | S—C14—H14C | 109.5 |
C8—C9—C10 | 113.1 (2) | H14A—C14—H14C | 109.5 |
C8—C9—H9A | 109.0 | H14B—C14—H14C | 109.5 |
O2—S—C1—C8 | 133.8 (2) | C3—C2—C7—O1 | 179.7 (2) |
C14—S—C1—C8 | −116.2 (2) | C1—C2—C7—O1 | 0.9 (3) |
O2—S—C1—C2 | −42.4 (3) | C3—C2—C7—C6 | 0.1 (4) |
C14—S—C1—C2 | 67.7 (3) | C1—C2—C7—C6 | −178.6 (2) |
C8—C1—C2—C7 | −0.3 (3) | C2—C1—C8—O1 | −0.5 (3) |
S—C1—C2—C7 | 176.39 (19) | S—C1—C8—O1 | −177.37 (16) |
C8—C1—C2—C3 | −178.7 (3) | C2—C1—C8—C9 | −178.7 (2) |
S—C1—C2—C3 | −2.1 (4) | S—C1—C8—C9 | 4.4 (4) |
C7—C2—C3—C4 | −0.9 (4) | C7—O1—C8—C1 | 1.1 (3) |
C1—C2—C3—C4 | 177.4 (3) | C7—O1—C8—C9 | 179.6 (2) |
C2—C3—C4—C5 | 1.1 (4) | C1—C8—C9—C10 | 75.3 (4) |
C2—C3—C4—Cl | −178.30 (19) | O1—C8—C9—C10 | −102.9 (2) |
C3—C4—C5—C6 | −0.5 (4) | C11—O3—C10—O4 | 4.8 (4) |
Cl—C4—C5—C6 | 178.9 (2) | C11—O3—C10—C9 | −177.6 (2) |
C4—C5—C6—C7 | −0.3 (4) | C8—C9—C10—O4 | −13.6 (4) |
C8—O1—C7—C6 | 178.3 (2) | C8—C9—C10—O3 | 168.8 (2) |
C8—O1—C7—C2 | −1.2 (3) | C10—O3—C11—C13 | 91.0 (4) |
C5—C6—C7—O1 | −179.0 (2) | C10—O3—C11—C12 | −150.6 (3) |
C5—C6—C7—C2 | 0.5 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
C13—H13B···Cgi | 0.96 | 2.78 | 3.515 (3) | 134 |
Symmetry code: (i) x, y+1, z. |
Experimental details
Crystal data | |
Chemical formula | C14H15ClO4S |
Mr | 314.77 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 298 |
a, b, c (Å) | 7.8824 (6), 10.0352 (8), 10.9004 (8) |
α, β, γ (°) | 69.254 (1), 81.662 (1), 67.703 (1) |
V (Å3) | 745.98 (10) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.41 |
Crystal size (mm) | 0.50 × 0.40 × 0.15 |
Data collection | |
Diffractometer | Bruker SMART CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1999) |
Tmin, Tmax | 0.816, 0.939 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5508, 2602, 2354 |
Rint | 0.017 |
(sin θ/λ)max (Å−1) | 0.594 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.048, 0.125, 1.12 |
No. of reflections | 2602 |
No. of parameters | 184 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.49, −0.29 |
Computer programs: SMART (Bruker, 2001), SAINT (Bruker, 2001), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 1998).
D—H···A | D—H | H···A | D···A | D—H···A |
C13—H13B···Cgi | 0.96 | 2.78 | 3.515 (3) | 134.4 |
Symmetry code: (i) x, y+1, z. |
References
Brandenburg, K. (1998). DIAMOND. Crystal Impact GbR, Bonn, Germany. Google Scholar
Bruker (2001). SAINT and SMART. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Choi, H. D., Seo, P. J., Son, B. W. & Lee, U. (2008a). Acta Cryst. E64, o2250. Web of Science CSD CrossRef IUCr Journals Google Scholar
Choi, H. D., Seo, P. J., Son, B. W. & Lee, U. (2008b). Acta Cryst. E64, o2384. Web of Science CSD CrossRef IUCr Journals Google Scholar
Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565. CrossRef IUCr Journals Google Scholar
Sheldrick, G. M. (1999). SADABS. University of Göttingen, Germany. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
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As a part of our ongoing research on the synthesis and structure of isopropyl 2-(5-halo-3-methylsulfinyl-1-benzofuran-2-yl)acetate analogues, we have recently described the crystal structures of isopropyl 2-(5-bromo-3-methylsulfinyl-1-benzofuran-2-yl)acetate (Choi et al., 2008a) and isopropyl 2-(5-iodo-3-methylsulfinyl-1-benzofuran-2-yl)acetate (Choi et al., 2008b). Here we report the crystal structure of the title compound, isopropyl 2-(5-chloro-3-methylsulfinyl-1-benzofuran-2-yl)acetate (Fig. 1).
The benzofuran unit is essentially planar, with a mean deviation of 0.012 (2) Å from the least-squares plane defined by the nine constituent atoms. The molecular packing is stabilized by aromatic π—π stacking interactions between the benzene rings of adjacent molecules. The Cg···Cgii distance is 4.057 (3) Å (Fig. 2; Cg is the centroid of C2—C7 benzene ring; symmetry code as in Fig. 2). The molecular packing is further stabilized by C—H···π interactions between a methyl H atom of isoproyl group and the benzene ring of the benzofuran uint, with a C13—H13B···Cgi separation of 2.78 Å (Fig. 2 and Table 1; Cg is the centroid of the C2-C7 benzene ring).