organic compounds
2-Iodo-N-(6-methyl-2-pyridyl)benzamide
aX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, and bDepartment of Chemistry, Bengal Engineering and Science University, Shibpur, Howrah 711 103, India
*Correspondence e-mail: hkfun@usm.my
The 13H11IN2O, comprises two crystallographically independent molecules. The dihedral angles between the ring planes are 53.56 (9) and 72.14 (19)° in the two molecules. Pairs of intermolecular N—H⋯N hydrogen bonds and I⋯O interactions link neighbouring molecules into two different pairs of dimers, those involving N—H⋯N interactions having R22(8) ring motifs. Short intermolecular I⋯O [3.1458 (15) Å] and I⋯N [3.4834 (16) Å] contacts are present. The is further stabilized by intermolecular C—H⋯π interactions [3.565 (2) and 3.629 (2) Å].
of the title compound, CRelated literature
For details of hydrogen-bond motifs, see: Bernstein et al. (1995). For applications in supramolecular chemistry and molecular recognition, see, for example: Goswami & Dey (2006); Goswami et al. (2005a,b); Steed & Atwood (2001); Lehn (1995); Desiraju (2003).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2005); cell SAINT (Bruker, 2005); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2003).
Supporting information
10.1107/S1600536808041950/tk2344sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808041950/tk2344Isup2.hkl
To a magnetically stirred solution of the 2-amino-6-methylpyridine (108 mg, 1.0 mmol) in dry CH2Cl2 (20 ml) and freshly distilled triethylamine (1.2 equiv), was added 2-iodobenzoyl chloride (1.1 equiv). Stirring was continued for 12 h. The triethylamine hydrochloride was filtered off, the organic layer after washing with water was dried (anhydrous Na2SO4) and then the solvent was removed under reduced pressure. The residue was purified using
on silica-gel to afford (I) (310 mg, 92%).N-bound hydrogen atoms were located from a difference Fourier map and refined freely; see Table 1 for N—H distances. The remaining H atoms were positioned geometrically with C—H = 0.93 Å (aromatic) or 0.96 Å (methyl), and refined in the riding model approximation with Uiso(H) = 1.2 or 1.5 Ueq(C). A rotating group model was used for the methyl groups. The highest peak (2.34 e. Å-3) is located 0.70 Å from I1A and the deepest hole (-1.51 e. Å-3) is located 0.75 Å from I1A.
Data collection: APEX2 (Bruker, 2005); cell
SAINT (Bruker, 2005); data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2003).Fig. 1. The molecular structure of (I), showing 50% probability displacement ellipsoids and the atomic numbering. Dashed lines show intramolecular hydrogen bonds. | |
Fig. 2. The crystal packing of (I), viewed down the b-axis, showing pairs of dimers with R22(8) motifs linked together through N—H···N interactions and other pairs of dimers linked together by I···O interactions. Intermolecular interactions are drawn as dashed lines. |
C13H11IN2O | Z = 4 |
Mr = 338.14 | F(000) = 656 |
Triclinic, P1 | Dx = 1.784 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 9.8687 (3) Å | Cell parameters from 9385 reflections |
b = 10.1276 (3) Å | θ = 2.5–35.9° |
c = 13.6366 (4) Å | µ = 2.53 mm−1 |
α = 97.521 (1)° | T = 100 K |
β = 93.113 (1)° | Plate, colourless |
γ = 110.380 (1)° | 0.49 × 0.32 × 0.12 mm |
V = 1259.28 (6) Å3 |
Bruker SMART APEXII CCD area-detector diffractometer | 11804 independent reflections |
Radiation source: fine-focus sealed tube | 9568 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.036 |
ϕ and ω scans | θmax = 36.0°, θmin = 2.2° |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | h = −16→16 |
Tmin = 0.374, Tmax = 0.746 | k = −16→16 |
47136 measured reflections | l = −22→21 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.034 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.090 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | w = 1/[σ2(Fo2) + (0.0498P)2] where P = (Fo2 + 2Fc2)/3 |
11804 reflections | (Δ/σ)max = 0.002 |
317 parameters | Δρmax = 2.34 e Å−3 |
0 restraints | Δρmin = −1.51 e Å−3 |
C13H11IN2O | γ = 110.380 (1)° |
Mr = 338.14 | V = 1259.28 (6) Å3 |
Triclinic, P1 | Z = 4 |
a = 9.8687 (3) Å | Mo Kα radiation |
b = 10.1276 (3) Å | µ = 2.53 mm−1 |
c = 13.6366 (4) Å | T = 100 K |
α = 97.521 (1)° | 0.49 × 0.32 × 0.12 mm |
β = 93.113 (1)° |
Bruker SMART APEXII CCD area-detector diffractometer | 11804 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | 9568 reflections with I > 2σ(I) |
Tmin = 0.374, Tmax = 0.746 | Rint = 0.036 |
47136 measured reflections |
R[F2 > 2σ(F2)] = 0.034 | 0 restraints |
wR(F2) = 0.090 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | Δρmax = 2.34 e Å−3 |
11804 reflections | Δρmin = −1.51 e Å−3 |
317 parameters |
Experimental. The low-temperature data was collected with the Oxford Cyrosystem Cobra low-temperature attachment. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
I1A | 0.600768 (13) | 0.719329 (12) | 0.055937 (8) | 0.02055 (4) | |
O1A | 0.73426 (15) | 0.40166 (14) | 0.01538 (10) | 0.0225 (3) | |
N1A | 0.71156 (17) | 0.46318 (15) | 0.17981 (11) | 0.0178 (3) | |
N2A | 0.53614 (17) | 0.34154 (15) | 0.27329 (11) | 0.0179 (3) | |
C1A | 0.8221 (2) | 0.75540 (18) | 0.08834 (12) | 0.0181 (3) | |
C2A | 0.9243 (2) | 0.89336 (19) | 0.09553 (14) | 0.0229 (3) | |
H2AA | 0.8937 | 0.9700 | 0.0928 | 0.027* | |
C3A | 1.0713 (2) | 0.9156 (2) | 0.10670 (14) | 0.0246 (4) | |
H3AA | 1.1393 | 1.0077 | 0.1128 | 0.030* | |
C4A | 1.1178 (2) | 0.8017 (2) | 0.10882 (14) | 0.0245 (4) | |
H4AA | 1.2166 | 0.8169 | 0.1141 | 0.029* | |
C5A | 1.0165 (2) | 0.6648 (2) | 0.10306 (14) | 0.0228 (3) | |
H5AA | 1.0479 | 0.5885 | 0.1049 | 0.027* | |
C6A | 0.86799 (19) | 0.64057 (17) | 0.09455 (12) | 0.0176 (3) | |
C7A | 0.76383 (19) | 0.49040 (17) | 0.09119 (13) | 0.0174 (3) | |
C8A | 0.61757 (19) | 0.32996 (17) | 0.19928 (12) | 0.0170 (3) | |
C9A | 0.6157 (2) | 0.20087 (18) | 0.14923 (14) | 0.0218 (3) | |
H9AA | 0.6738 | 0.1973 | 0.0983 | 0.026* | |
C10A | 0.5238 (2) | 0.07761 (19) | 0.17815 (16) | 0.0260 (4) | |
H10A | 0.5191 | −0.0112 | 0.1464 | 0.031* | |
C11A | 0.4392 (2) | 0.08663 (19) | 0.25418 (15) | 0.0243 (4) | |
H11A | 0.3774 | 0.0043 | 0.2741 | 0.029* | |
C12A | 0.4472 (2) | 0.22025 (19) | 0.30064 (14) | 0.0206 (3) | |
C13A | 0.3562 (2) | 0.2346 (2) | 0.38233 (16) | 0.0267 (4) | |
H13A | 0.4006 | 0.3270 | 0.4226 | 0.040* | |
H13B | 0.3485 | 0.1620 | 0.4227 | 0.040* | |
H13C | 0.2610 | 0.2241 | 0.3543 | 0.040* | |
I1B | 0.755985 (14) | 0.434720 (13) | 0.498669 (9) | 0.02504 (4) | |
O1B | 0.64755 (17) | 0.24584 (15) | 0.71745 (14) | 0.0330 (4) | |
N1B | 0.49390 (17) | 0.36405 (15) | 0.68719 (11) | 0.0176 (3) | |
N2B | 0.24463 (17) | 0.28564 (15) | 0.66686 (11) | 0.0182 (3) | |
C1B | 0.8325 (2) | 0.53935 (18) | 0.64543 (13) | 0.0194 (3) | |
C2B | 0.9594 (2) | 0.65908 (19) | 0.66103 (14) | 0.0221 (3) | |
H2BA | 1.0122 | 0.6876 | 0.6082 | 0.027* | |
C3B | 1.0066 (2) | 0.7357 (2) | 0.75644 (14) | 0.0229 (3) | |
H3BA | 1.0923 | 0.8151 | 0.7677 | 0.027* | |
C4B | 0.9267 (2) | 0.6946 (2) | 0.83480 (14) | 0.0244 (4) | |
H4BA | 0.9578 | 0.7474 | 0.8983 | 0.029* | |
C5B | 0.7997 (2) | 0.57396 (19) | 0.81873 (14) | 0.0217 (3) | |
H5BA | 0.7461 | 0.5464 | 0.8714 | 0.026* | |
C6B | 0.75314 (19) | 0.49482 (17) | 0.72370 (12) | 0.0170 (3) | |
C7B | 0.6259 (2) | 0.35554 (18) | 0.70882 (13) | 0.0199 (3) | |
C8B | 0.3617 (2) | 0.24816 (17) | 0.66336 (12) | 0.0180 (3) | |
C9B | 0.3545 (2) | 0.10825 (18) | 0.63597 (14) | 0.0222 (3) | |
H9BA | 0.4381 | 0.0859 | 0.6336 | 0.027* | |
C10B | 0.2170 (2) | 0.0036 (2) | 0.61241 (15) | 0.0265 (4) | |
H10B | 0.2071 | −0.0914 | 0.5948 | 0.032* | |
C11B | 0.0950 (2) | 0.0406 (2) | 0.61509 (14) | 0.0257 (4) | |
H11B | 0.0027 | −0.0291 | 0.5998 | 0.031* | |
C12B | 0.1116 (2) | 0.18363 (19) | 0.64094 (13) | 0.0214 (3) | |
C13B | −0.0153 (2) | 0.2316 (2) | 0.63969 (16) | 0.0282 (4) | |
H13D | 0.0075 | 0.3177 | 0.6866 | 0.042* | |
H13E | −0.0983 | 0.1587 | 0.6574 | 0.042* | |
H13F | −0.0367 | 0.2494 | 0.5742 | 0.042* | |
H1NA | 0.728 (3) | 0.530 (3) | 0.2269 (19) | 0.030 (7)* | |
H1NB | 0.485 (3) | 0.444 (3) | 0.6892 (19) | 0.035 (7)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
I1A | 0.02262 (6) | 0.01832 (5) | 0.02205 (6) | 0.00989 (4) | 0.00152 (4) | 0.00112 (4) |
O1A | 0.0268 (7) | 0.0187 (6) | 0.0190 (6) | 0.0057 (5) | 0.0032 (5) | −0.0012 (5) |
N1A | 0.0217 (7) | 0.0118 (5) | 0.0179 (6) | 0.0038 (5) | 0.0027 (5) | 0.0008 (5) |
N2A | 0.0194 (7) | 0.0138 (6) | 0.0189 (6) | 0.0039 (5) | 0.0009 (5) | 0.0029 (5) |
C1A | 0.0212 (8) | 0.0158 (7) | 0.0170 (7) | 0.0062 (6) | 0.0022 (6) | 0.0022 (5) |
C2A | 0.0295 (10) | 0.0152 (7) | 0.0217 (8) | 0.0057 (7) | 0.0019 (7) | 0.0021 (6) |
C3A | 0.0274 (10) | 0.0179 (7) | 0.0231 (8) | 0.0018 (7) | −0.0004 (7) | 0.0034 (6) |
C4A | 0.0205 (9) | 0.0229 (8) | 0.0267 (9) | 0.0033 (7) | 0.0022 (7) | 0.0047 (7) |
C5A | 0.0220 (9) | 0.0209 (8) | 0.0259 (8) | 0.0076 (7) | 0.0028 (7) | 0.0051 (7) |
C6A | 0.0202 (8) | 0.0150 (6) | 0.0167 (7) | 0.0055 (6) | 0.0019 (6) | 0.0018 (5) |
C7A | 0.0187 (8) | 0.0151 (6) | 0.0189 (7) | 0.0067 (6) | 0.0026 (6) | 0.0027 (5) |
C8A | 0.0198 (8) | 0.0126 (6) | 0.0180 (7) | 0.0055 (6) | −0.0002 (6) | 0.0023 (5) |
C9A | 0.0269 (9) | 0.0141 (7) | 0.0255 (8) | 0.0093 (6) | 0.0020 (7) | 0.0013 (6) |
C10A | 0.0304 (10) | 0.0119 (7) | 0.0344 (10) | 0.0075 (7) | 0.0004 (8) | 0.0004 (7) |
C11A | 0.0249 (9) | 0.0140 (7) | 0.0322 (10) | 0.0045 (6) | −0.0003 (7) | 0.0054 (7) |
C12A | 0.0189 (8) | 0.0165 (7) | 0.0260 (8) | 0.0051 (6) | 0.0007 (6) | 0.0065 (6) |
C13A | 0.0278 (10) | 0.0204 (8) | 0.0317 (10) | 0.0062 (7) | 0.0077 (8) | 0.0085 (7) |
I1B | 0.02984 (7) | 0.02357 (6) | 0.01716 (6) | 0.00598 (5) | 0.00087 (4) | −0.00172 (4) |
O1B | 0.0255 (7) | 0.0141 (6) | 0.0585 (10) | 0.0062 (5) | −0.0030 (7) | 0.0086 (6) |
N1B | 0.0201 (7) | 0.0113 (5) | 0.0198 (6) | 0.0037 (5) | 0.0015 (5) | 0.0023 (5) |
N2B | 0.0196 (7) | 0.0167 (6) | 0.0161 (6) | 0.0040 (5) | 0.0008 (5) | 0.0026 (5) |
C1B | 0.0211 (8) | 0.0171 (7) | 0.0183 (7) | 0.0057 (6) | 0.0016 (6) | 0.0010 (6) |
C2B | 0.0214 (8) | 0.0192 (7) | 0.0219 (8) | 0.0029 (6) | 0.0045 (6) | 0.0016 (6) |
C3B | 0.0209 (9) | 0.0184 (7) | 0.0237 (8) | 0.0017 (6) | 0.0000 (6) | 0.0000 (6) |
C4B | 0.0308 (10) | 0.0172 (7) | 0.0187 (8) | 0.0024 (7) | −0.0008 (7) | −0.0004 (6) |
C5B | 0.0279 (9) | 0.0169 (7) | 0.0184 (7) | 0.0054 (7) | 0.0037 (6) | 0.0032 (6) |
C6B | 0.0177 (8) | 0.0129 (6) | 0.0192 (7) | 0.0040 (6) | 0.0009 (6) | 0.0026 (5) |
C7B | 0.0221 (8) | 0.0142 (7) | 0.0226 (8) | 0.0053 (6) | 0.0030 (6) | 0.0034 (6) |
C8B | 0.0231 (8) | 0.0128 (6) | 0.0155 (7) | 0.0031 (6) | 0.0006 (6) | 0.0028 (5) |
C9B | 0.0246 (9) | 0.0132 (7) | 0.0253 (8) | 0.0037 (6) | −0.0006 (7) | 0.0005 (6) |
C10B | 0.0320 (11) | 0.0139 (7) | 0.0265 (9) | 0.0014 (7) | −0.0041 (8) | 0.0014 (6) |
C11B | 0.0241 (9) | 0.0190 (8) | 0.0252 (9) | −0.0023 (7) | −0.0029 (7) | 0.0036 (7) |
C12B | 0.0219 (9) | 0.0206 (8) | 0.0174 (7) | 0.0023 (6) | −0.0002 (6) | 0.0038 (6) |
C13B | 0.0203 (9) | 0.0316 (10) | 0.0284 (9) | 0.0053 (8) | −0.0006 (7) | 0.0023 (8) |
I1A—C1A | 2.0966 (18) | I1B—C1B | 2.1027 (17) |
O1A—C7A | 1.226 (2) | O1B—C7B | 1.221 (2) |
N1A—C7A | 1.363 (2) | N1B—C7B | 1.354 (2) |
N1A—C8A | 1.414 (2) | N1B—C8B | 1.404 (2) |
N1A—H1NA | 0.83 (3) | N1B—H1NB | 0.84 (3) |
N2A—C8A | 1.342 (2) | N2B—C8B | 1.337 (2) |
N2A—C12A | 1.350 (2) | N2B—C12B | 1.351 (2) |
C1A—C2A | 1.397 (2) | C1B—C6B | 1.388 (2) |
C1A—C6A | 1.398 (2) | C1B—C2B | 1.389 (3) |
C2A—C3A | 1.386 (3) | C2B—C3B | 1.389 (3) |
C2A—H2AA | 0.9300 | C2B—H2BA | 0.9300 |
C3A—C4A | 1.385 (3) | C3B—C4B | 1.384 (3) |
C3A—H3AA | 0.9300 | C3B—H3BA | 0.9300 |
C4A—C5A | 1.388 (3) | C4B—C5B | 1.395 (3) |
C4A—H4AA | 0.9300 | C4B—H4BA | 0.9300 |
C5A—C6A | 1.394 (3) | C5B—C6B | 1.393 (2) |
C5A—H5AA | 0.9300 | C5B—H5BA | 0.9300 |
C6A—C7A | 1.503 (2) | C6B—C7B | 1.507 (2) |
C8A—C9A | 1.387 (2) | C8B—C9B | 1.393 (2) |
C9A—C10A | 1.384 (3) | C9B—C10B | 1.389 (3) |
C9A—H9AA | 0.9300 | C9B—H9BA | 0.9300 |
C10A—C11A | 1.379 (3) | C10B—C11B | 1.381 (3) |
C10A—H10A | 0.9300 | C10B—H10B | 0.9300 |
C11A—C12A | 1.391 (3) | C11B—C12B | 1.394 (3) |
C11A—H11A | 0.9300 | C11B—H11B | 0.9300 |
C12A—C13A | 1.492 (3) | C12B—C13B | 1.493 (3) |
C13A—H13A | 0.9600 | C13B—H13D | 0.9600 |
C13A—H13B | 0.9600 | C13B—H13E | 0.9600 |
C13A—H13C | 0.9600 | C13B—H13F | 0.9600 |
C7A—N1A—C8A | 125.92 (15) | C7B—N1B—C8B | 125.89 (15) |
C7A—N1A—H1NA | 120.2 (18) | C7B—N1B—H1NB | 120.7 (19) |
C8A—N1A—H1NA | 113.6 (18) | C8B—N1B—H1NB | 113.4 (19) |
C8A—N2A—C12A | 117.99 (15) | C8B—N2B—C12B | 118.81 (16) |
C2A—C1A—C6A | 120.10 (17) | C6B—C1B—C2B | 121.01 (16) |
C2A—C1A—I1A | 119.55 (13) | C6B—C1B—I1B | 120.61 (13) |
C6A—C1A—I1A | 120.14 (13) | C2B—C1B—I1B | 118.26 (13) |
C3A—C2A—C1A | 119.77 (17) | C3B—C2B—C1B | 119.29 (17) |
C3A—C2A—H2AA | 120.1 | C3B—C2B—H2BA | 120.4 |
C1A—C2A—H2AA | 120.1 | C1B—C2B—H2BA | 120.4 |
C4A—C3A—C2A | 120.51 (18) | C4B—C3B—C2B | 120.32 (17) |
C4A—C3A—H3AA | 119.7 | C4B—C3B—H3BA | 119.8 |
C2A—C3A—H3AA | 119.7 | C2B—C3B—H3BA | 119.8 |
C3A—C4A—C5A | 119.77 (18) | C3B—C4B—C5B | 120.11 (17) |
C3A—C4A—H4AA | 120.1 | C3B—C4B—H4BA | 119.9 |
C5A—C4A—H4AA | 120.1 | C5B—C4B—H4BA | 119.9 |
C4A—C5A—C6A | 120.64 (17) | C6B—C5B—C4B | 119.94 (17) |
C4A—C5A—H5AA | 119.7 | C6B—C5B—H5BA | 120.0 |
C6A—C5A—H5AA | 119.7 | C4B—C5B—H5BA | 120.0 |
C5A—C6A—C1A | 119.12 (16) | C1B—C6B—C5B | 119.29 (16) |
C5A—C6A—C7A | 118.07 (15) | C1B—C6B—C7B | 120.77 (15) |
C1A—C6A—C7A | 122.80 (16) | C5B—C6B—C7B | 119.71 (15) |
O1A—C7A—N1A | 124.45 (16) | O1B—C7B—N1B | 125.15 (17) |
O1A—C7A—C6A | 121.70 (16) | O1B—C7B—C6B | 119.13 (17) |
N1A—C7A—C6A | 113.81 (14) | N1B—C7B—C6B | 115.71 (14) |
N2A—C8A—C9A | 123.90 (16) | N2B—C8B—C9B | 123.56 (16) |
N2A—C8A—N1A | 113.34 (14) | N2B—C8B—N1B | 113.63 (14) |
C9A—C8A—N1A | 122.70 (17) | C9B—C8B—N1B | 122.78 (17) |
C10A—C9A—C8A | 117.33 (18) | C10B—C9B—C8B | 117.12 (18) |
C10A—C9A—H9AA | 121.3 | C10B—C9B—H9BA | 121.4 |
C8A—C9A—H9AA | 121.3 | C8B—C9B—H9BA | 121.4 |
C11A—C10A—C9A | 119.90 (17) | C11B—C10B—C9B | 120.02 (18) |
C11A—C10A—H10A | 120.1 | C11B—C10B—H10B | 120.0 |
C9A—C10A—H10A | 120.1 | C9B—C10B—H10B | 120.0 |
C10A—C11A—C12A | 119.28 (18) | C10B—C11B—C12B | 119.32 (17) |
C10A—C11A—H11A | 120.4 | C10B—C11B—H11B | 120.3 |
C12A—C11A—H11A | 120.4 | C12B—C11B—H11B | 120.3 |
N2A—C12A—C11A | 121.60 (18) | N2B—C12B—C11B | 121.10 (18) |
N2A—C12A—C13A | 117.44 (16) | N2B—C12B—C13B | 116.96 (17) |
C11A—C12A—C13A | 120.95 (17) | C11B—C12B—C13B | 121.93 (17) |
C12A—C13A—H13A | 109.5 | C12B—C13B—H13D | 109.5 |
C12A—C13A—H13B | 109.5 | C12B—C13B—H13E | 109.5 |
H13A—C13A—H13B | 109.5 | H13D—C13B—H13E | 109.5 |
C12A—C13A—H13C | 109.5 | C12B—C13B—H13F | 109.5 |
H13A—C13A—H13C | 109.5 | H13D—C13B—H13F | 109.5 |
H13B—C13A—H13C | 109.5 | H13E—C13B—H13F | 109.5 |
C6A—C1A—C2A—C3A | 1.4 (3) | C6B—C1B—C2B—C3B | −0.5 (3) |
I1A—C1A—C2A—C3A | −173.36 (14) | I1B—C1B—C2B—C3B | 175.59 (14) |
C1A—C2A—C3A—C4A | 1.3 (3) | C1B—C2B—C3B—C4B | −1.1 (3) |
C2A—C3A—C4A—C5A | −2.2 (3) | C2B—C3B—C4B—C5B | 1.3 (3) |
C3A—C4A—C5A—C6A | 0.4 (3) | C3B—C4B—C5B—C6B | 0.0 (3) |
C4A—C5A—C6A—C1A | 2.2 (3) | C2B—C1B—C6B—C5B | 1.8 (3) |
C4A—C5A—C6A—C7A | −178.51 (17) | I1B—C1B—C6B—C5B | −174.20 (13) |
C2A—C1A—C6A—C5A | −3.1 (3) | C2B—C1B—C6B—C7B | −172.64 (17) |
I1A—C1A—C6A—C5A | 171.60 (13) | I1B—C1B—C6B—C7B | 11.3 (2) |
C2A—C1A—C6A—C7A | 177.67 (16) | C4B—C5B—C6B—C1B | −1.5 (3) |
I1A—C1A—C6A—C7A | −7.6 (2) | C4B—C5B—C6B—C7B | 172.96 (17) |
C8A—N1A—C7A—O1A | 0.8 (3) | C8B—N1B—C7B—O1B | −5.4 (3) |
C8A—N1A—C7A—C6A | −176.93 (15) | C8B—N1B—C7B—C6B | 175.15 (16) |
C5A—C6A—C7A—O1A | −77.9 (2) | C1B—C6B—C7B—O1B | 86.5 (2) |
C1A—C6A—C7A—O1A | 101.3 (2) | C5B—C6B—C7B—O1B | −87.9 (2) |
C5A—C6A—C7A—N1A | 99.94 (19) | C1B—C6B—C7B—N1B | −94.0 (2) |
C1A—C6A—C7A—N1A | −80.8 (2) | C5B—C6B—C7B—N1B | 91.6 (2) |
C12A—N2A—C8A—C9A | 0.1 (3) | C12B—N2B—C8B—C9B | −1.2 (3) |
C12A—N2A—C8A—N1A | −177.17 (15) | C12B—N2B—C8B—N1B | 177.04 (14) |
C7A—N1A—C8A—N2A | −153.70 (16) | C7B—N1B—C8B—N2B | 165.94 (16) |
C7A—N1A—C8A—C9A | 29.0 (3) | C7B—N1B—C8B—C9B | −15.8 (3) |
N2A—C8A—C9A—C10A | 0.0 (3) | N2B—C8B—C9B—C10B | −0.7 (3) |
N1A—C8A—C9A—C10A | 177.00 (17) | N1B—C8B—C9B—C10B | −178.83 (17) |
C8A—C9A—C10A—C11A | −0.2 (3) | C8B—C9B—C10B—C11B | 1.1 (3) |
C9A—C10A—C11A—C12A | 0.2 (3) | C9B—C10B—C11B—C12B | 0.4 (3) |
C8A—N2A—C12A—C11A | 0.0 (3) | C8B—N2B—C12B—C11B | 2.8 (3) |
C8A—N2A—C12A—C13A | −179.40 (16) | C8B—N2B—C12B—C13B | −176.19 (16) |
C10A—C11A—C12A—N2A | −0.1 (3) | C10B—C11B—C12B—N2B | −2.4 (3) |
C10A—C11A—C12A—C13A | 179.25 (17) | C10B—C11B—C12B—C13B | 176.50 (18) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1A—H1NA···N2Bi | 0.83 (3) | 2.14 (3) | 2.962 (2) | 172 (3) |
N1B—H1NB···N2Ai | 0.84 (3) | 2.25 (3) | 3.079 (2) | 169 (2) |
C9A—H9AA···O1A | 0.93 | 2.40 | 2.895 (2) | 113 |
C5B—H5BA···O1Aii | 0.93 | 2.58 | 3.359 (2) | 141 |
C9B—H9BA···O1B | 0.93 | 2.26 | 2.825 (3) | 118 |
C11A—H11A···O1Biii | 0.93 | 2.48 | 3.254 (2) | 141 |
C4B—H4BA···Cg1ii | 0.93 | 2.71 | 3.565 (2) | 153 |
C13A—H13C···Cg2i | 0.96 | 2.85 | 3.629 (2) | 139 |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) x, y, z+1; (iii) −x+1, −y, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C13H11IN2O |
Mr | 338.14 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 100 |
a, b, c (Å) | 9.8687 (3), 10.1276 (3), 13.6366 (4) |
α, β, γ (°) | 97.521 (1), 93.113 (1), 110.380 (1) |
V (Å3) | 1259.28 (6) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 2.53 |
Crystal size (mm) | 0.49 × 0.32 × 0.12 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2005) |
Tmin, Tmax | 0.374, 0.746 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 47136, 11804, 9568 |
Rint | 0.036 |
(sin θ/λ)max (Å−1) | 0.827 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.034, 0.090, 1.05 |
No. of reflections | 11804 |
No. of parameters | 317 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 2.34, −1.51 |
Computer programs: APEX2 (Bruker, 2005), SAINT (Bruker, 2005), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2003).
D—H···A | D—H | H···A | D···A | D—H···A |
N1A—H1NA···N2Bi | 0.83 (3) | 2.14 (3) | 2.962 (2) | 172 (3) |
N1B—H1NB···N2Ai | 0.84 (3) | 2.25 (3) | 3.079 (2) | 169 (2) |
C9A—H9AA···O1A | 0.9300 | 2.4000 | 2.895 (2) | 113.00 |
C5B—H5BA···O1Aii | 0.9300 | 2.5800 | 3.359 (2) | 141.00 |
C9B—H9BA···O1B | 0.9300 | 2.2600 | 2.825 (3) | 118.00 |
C11A—H11A···O1Biii | 0.9300 | 2.4800 | 3.254 (2) | 141.00 |
C4B—H4BA···Cg1ii | 0.9300 | 2.7100 | 3.565 (2) | 153 |
C13A—H13C···Cg2i | 0.9600 | 2.8500 | 3.629 (2) | 139 |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) x, y, z+1; (iii) −x+1, −y, −z+1. |
Acknowledgements
HKF and RK thank the Malaysian Government and Universiti Sains Malaysia for Science Fund grant No. 305/PFIZIK/613312. RK thanks Universiti Sains Malaysia for a post-doctoral research fellowship. We thank the DST [SR/S1/OC-13/2005], Government of India, for financial support. ACM thanks the UGC, Government of India, for a fellowship. HKF also thanks Universiti Sains Malaysia for the Research University Golden Goose grant No. 1001/PFIZIK/811012.
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The role of hydrogen bonds involving neutral amidic-type NH and carbonyl type O-atom in the controlled assembly of biologically relevant molecules giving outstanding architectures is an obvious entity in nature. Amide derivatives of heterocyclic compounds are important hydrogen bonding synthons as they are the very useful substrates which can be used for the synthesis of designed receptors in the field of molecular recognition (Goswami & Dey 2006 a; Goswami et al., 2005a) and supramolecular chemistry (Steed & Atwood 2001; Lehn 1995; Desiraju 2003). We have previously reported the design and synthesis of a series of symmetric diamido biaryls by direct homocoupling of iodoarylbenzamides (Goswmai et al. 2005b).
In the title compound (I), Fig. 1, intramolecular C—H···O hydrogen bonds generate six-membered rings, producing S(6) ring motifs. Pairs of intermolecular N—H···N hydrogen bonds and I···O interactions link neighbouring molecules into two different pairs of dimers, those involving N—H···N interactions having R22(8) ring motifs (Fig. 2). The interesting features of the crystal structure are the short intermolecular I···O [3.1458 (15) Å; symmetry: 1 - x, 1 - y, -z] and I···N [3.4834 (16) Å; symmetry: x, y, z] contacts which are significanlty shorter than the sum of the van der Waals radii of these atoms. The crystal structure is further stabilized by intermolecular C—H···π interactions (Table 1, Cg1 and Cg2 are the centroids of the C1A–C6A and C1B–C6B benzene rings).